Citrus Sinensis ID: 027292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHccHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHcEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccHHHHHHHcccccccccccccccccccEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
masgggygdpnqkiDYVFKVVLIGDSAVGKSQILARFArnefsldskatigveFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGnksdleeqravptedAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVnkknltagegqgngnpaslsgkkilvpgpaqeipakssmccrt
Flexible Loop (DISEMBL)
masgggygdpnqKIDYVFKVVLIGDSAVGKSQILARFarnefsldskATIGVEFQTRTLVIQHksvkaqiwdtagqERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEElrshadknIVIILIgnksdleeqRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKIlvpgpaqeipakssmccrt
Low Complexity Region (SEG)
MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT
Disordered region (IsUnstruct)
************KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK*****************AQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL**************************************
Disordered Region (DISOPRED)
**************DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF***************************************SSMCCR*
Disordered Region (DISEMBL)
MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL***********KEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEI**********
Disordered Region (DISPRO)
**********NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q40191	226	Ras-related protein Rab11	N/A	no	0.995	0.991	0.875	1e-115
Q9FJN8	226	Ras-related protein RABA4	yes	no	1.0	0.995	0.862	1e-113
Q40522	222	Ras-related protein Rab11	N/A	no	0.977	0.990	0.869	1e-112
Q40520	222	Ras-related protein Rab11	N/A	no	0.977	0.990	0.860	1e-111
Q9SMQ6	224	Ras-related protein RABA4	no	no	0.928	0.933	0.824	1e-102
P25766	226	Ras-related protein RGP1	no	no	0.986	0.982	0.767	1e-95
Q9LH50	222	Ras-related protein RABA4	no	no	0.955	0.968	0.737	1e-93
Q9FE79	223	Ras-related protein RABA4	no	no	0.946	0.955	0.745	1e-90
Q39434	214	Ras-related protein Rab2B	N/A	no	0.822	0.864	0.681	2e-72
Q9LNW1	214	Ras-related protein RABA2	no	no	0.902	0.948	0.597	2e-72

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/224 (87%), Positives = 211/224 (94%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD N KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK+TIGVEFQTRTLV
Sbjct: 1   MASGGGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 61  IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNK DL  QR VPTEDAKEFA+KEGLFFLETSALEATNVE+AF TVLTEI+N
Sbjct: 121 KNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224
           IVNKK+L A E QGNGN ASLSG+KI++PGPAQEIPAK +MCC+
Sbjct: 181 IVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQ 224

Lotus japonicus (taxid: 34305)

>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/226 (86%), Positives = 210/226 (92%), Gaps = 1/226 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M SGGGYGDP+QKIDYVFKVVLIGDSAVGKSQILAR+AR+EFSLDSKATIGVEFQTRTLV
Sbjct: 1   MTSGGGYGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI+RRQ+FDHIPRWLEELR+HAD
Sbjct: 61  IDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDL +QRA+PTEDAKEFA+KEGLFFLETSA  ATNVE+AF TVLTEIFN
Sbjct: 121 KNIVIILIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKI-LVPGPAQEIPAKSSMCCRT 225
           IVNKK+L A E Q NGNP SL+GKKI +VPGP Q IP KS+MCC +
Sbjct: 181 IVNKKSLAASEDQENGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS 226

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/222 (86%), Positives = 209/222 (94%), Gaps = 2/222 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASG  YGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL 
Sbjct: 1   MASG--YGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLA 58

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 59  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHAD 118

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           +NIVI+LIGNK+DLE+QRAVPTEDAKEFAQKEGLFFLETSA+EATN+E+AF+TVLTEIFN
Sbjct: 119 RNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFN 178

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
           IVNKKNL A + Q NGNPASL+GKKILVPGP Q IP K + C
Sbjct: 179 IVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACC 220

Nicotiana tabacum (taxid: 4097)

>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/222 (86%), Positives = 207/222 (93%), Gaps = 2/222 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASG  YGD +QKIDYVFKVVLIGDSAVGK+QILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASG--YGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLV 58

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 59  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHAD 118

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           +NIVI+L GNK+DLE+QRAVPTEDAKEFAQKEGLFFLETSA+EAT +E+AF+TVLTEIFN
Sbjct: 119 RNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFN 178

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
           IVNKKNL A E Q N NPASL+GKKILVPGP Q IP K + C
Sbjct: 179 IVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACC 220

Nicotiana tabacum (taxid: 4097)

>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2 SV=1

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 197/211 (93%), Gaps = 2/211 (0%)

Query: 13  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 72
           K+DYVFKVVLIGDSAVGKSQ+LARFAR+EFS+DSKATIGVEFQTRTL I+ KS+KAQIWD
Sbjct: 13  KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query: 73  TAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS 132
           TAGQERYRAVTSAYYRGAVGAMLVYD+++R++F+HIPRWLEELR+HADKNIVIILIGNKS
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEG 192
           DLE+QRAVPTEDAKEFA+KEGLFFLETSAL ATNVEN+F T++T+I+N VNKKNL A EG
Sbjct: 133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNL-ASEG 191

Query: 193 QGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             N NP SL+GKKIL+PG  QEIPAK+S CC
Sbjct: 192 DSN-NPGSLAGKKILIPGSGQEIPAKTSTCC 221

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  348 bits (894), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/224 (76%), Positives = 192/224 (85%), Gaps = 2/224 (0%)

Query: 1   MASGGG-YGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL 59
           M+ GGG YG+  QKIDYVFKVVLIGDSAVGKSQ+LARFARNEF+LDSKATIGVEFQTRTL
Sbjct: 1   MSRGGGSYGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTL 60

Query: 60  VIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA 119
            I  ++VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDH+ RWLEELR HA
Sbjct: 61  HIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHA 120

Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           DKNIVI+LIGNKSDL   R VPTEDAKEFA++E LFF+ETSALE+TNVENAFMTVLTEI+
Sbjct: 121 DKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIY 180

Query: 180 NIVNKKNLTAGEG-QGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
            IV+KKNL A E    +GN + L G KI+VPG     P K+S C
Sbjct: 181 RIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 224

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1

 Score =  342 bits (877), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 190/217 (87%), Gaps = 2/217 (0%)

Query: 7   YGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV 66
           YGD NQKIDYVFKVVLIGDSAVGK+Q+LARFARNEFS+DSKATIGVEFQT+TLVI +K+V
Sbjct: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTV 64

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII 126
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+++RQSFDH+ +WLEELR HADKNIVI+
Sbjct: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIM 124

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           LIGNK DL   RAVPTEDA+EFAQ+E LFF+ETSALEATNVE AF+T+LTEI+ I++KK+
Sbjct: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKS 184

Query: 187 LTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
           LTA +   +GN + L G +I++  P+++   K   CC
Sbjct: 185 LTADDDDADGNSSLLKGTRIII--PSEQESGKRGGCC 219

Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  332 bits (851), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/216 (74%), Positives = 186/216 (86%), Gaps = 3/216 (1%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           NQKIDYVFKVVLIGDSAVGKSQ+LARF+RNEFS++SKATIGVEFQTRTL I  K++KAQI
Sbjct: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQI 68

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDH+ RWLEELR HADKNIVI+LIGN
Sbjct: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGN 128

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           K+DL   RAVPTEDAKEFAQ+E LFF+ETSAL++ NVE +F+TVLTEI+ IV+KKNL A 
Sbjct: 129 KTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVAN 188

Query: 191 -EGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
            EG+  G+ + L G KI+V G  +E  +K   CC T
Sbjct: 189 EEGESGGDSSLLQGTKIVVAG--EETESKGKGCCGT 222

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 154/185 (83%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQI
Sbjct: 6   DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           KSDL+  RAV  ED +  A+KEGL FLETSALEA N+E AF T+LTEI++I++KK L A 
Sbjct: 126 KSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQ 185

Query: 191 EGQGN 195
           E   N
Sbjct: 186 EASSN 190

Beta vulgaris (taxid: 161934)

>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 163/221 (73%), Gaps = 18/221 (8%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQI
Sbjct: 6   DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+F+++ RWL ELR HAD NIVI++ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGN 125

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           KSDL   R+V  ED +  A+KEGL FLETSALEATN+E AF T+L+EI++I++KK L A 
Sbjct: 126 KSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKALAAQ 185

Query: 191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSM------CCRT 225
           E  GN            +PG    I    S       CC T
Sbjct: 186 EAAGN------------LPGQGTAINISDSSATNRKGCCST 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
225468180	226	PREDICTED: ras-related protein Rab11A [V	1.0	0.995	0.92	1e-121
449451415	226	PREDICTED: ras-related protein Rab11A-li	1.0	0.995	0.911	1e-119
224096151	223	predicted protein [Populus trichocarpa]	0.986	0.995	0.927	1e-118
224083598	223	predicted protein [Populus trichocarpa]	0.991	1.0	0.910	1e-117
351726222	223	uncharacterized protein LOC100527786 [Gl	0.991	1.0	0.910	1e-116
356567670	223	PREDICTED: ras-related protein Rab11A-li	0.991	1.0	0.897	1e-115
388522627	225	unknown [Medicago truncatula]	1.0	1.0	0.866	1e-115
357463299	222	GTP-binding protein [Medicago truncatula	0.986	1.0	0.906	1e-114
217071438	225	unknown [Medicago truncatula]	1.0	1.0	0.866	1e-114
1381676	222	small GTP-binding protein, partial [Glyc	0.982	0.995	0.882	1e-113

>gi|225468180|ref|XP_002273530.1| PREDICTED: ras-related protein Rab11A [Vitis vinifera] gi|147811153|emb|CAN70163.1| hypothetical protein VITISV_039255 [Vitis vinifera]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/225 (92%), Positives = 219/225 (97%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGGGYGDSSQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDHIPRWLEELR HAD
Sbjct: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRGHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNK+DLEEQRAVPTEDAKEFA+KEGLFFLETSALEATNVENAF+TVLTEIFN
Sbjct: 121 KNIVIILIGNKTDLEEQRAVPTEDAKEFAEKEGLFFLETSALEATNVENAFLTVLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
           IVNKKNL AGE Q NGNPASL+GK+I +PGPAQEIPAKS+MCC++
Sbjct: 181 IVNKKNLVAGEDQANGNPASLTGKRITIPGPAQEIPAKSNMCCKS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451415|ref|XP_004143457.1| PREDICTED: ras-related protein Rab11A-like [Cucumis sativus] gi|449496418|ref|XP_004160129.1| PREDICTED: ras-related protein Rab11A-like [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/226 (91%), Positives = 219/226 (96%), Gaps = 1/226 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGGGYGDANQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKSVKAQIWDTAGQERYRAVTSAYYRGA+GAMLVYDI++RQ+FDHIPRWLEELRSHAD
Sbjct: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHIPRWLEELRSHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLE+QRAVPTEDAKEFA+KEGLFFLETSALE+TNVENAFMTVLTEIF+
Sbjct: 121 KNIVIILIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALESTNVENAFMTVLTEIFS 180

Query: 181 IVNKKNLTAGEGQGNGNPASLS-GKKILVPGPAQEIPAKSSMCCRT 225
           I+N+KNL AGE QGNGN ASL+ GKKI++PGPAQEIPAKS MCC T
Sbjct: 181 IMNRKNLAAGENQGNGNSASLAGGKKIIIPGPAQEIPAKSKMCCST 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096151|ref|XP_002310552.1| predicted protein [Populus trichocarpa] gi|222853455|gb|EEE91002.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/222 (92%), Positives = 215/222 (96%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGGGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 61  IDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLE+QRAVPTEDAKEFAQKEGLFFLETSAL+ATNVENAFMTVLTEIFN
Sbjct: 121 KNIVIILIGNKSDLEDQRAVPTEDAKEFAQKEGLFFLETSALQATNVENAFMTVLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
           IVNKKNL AGE Q NGNPASLSGKKI++PGPAQEIPAKS  C
Sbjct: 181 IVNKKNLVAGEDQINGNPASLSGKKIIIPGPAQEIPAKSKCC 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083598|ref|XP_002307071.1| predicted protein [Populus trichocarpa] gi|118482292|gb|ABK93073.1| unknown [Populus trichocarpa] gi|222856520|gb|EEE94067.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/224 (91%), Positives = 215/224 (95%), Gaps = 1/224 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGGGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELRSHAD
Sbjct: 61  IDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRSHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLE+QRAVPTED  EFAQKEGLFFLETSAL+ATNVE+AFMT+LTEIFN
Sbjct: 121 KNIVIILIGNKSDLEDQRAVPTEDVNEFAQKEGLFFLETSALQATNVESAFMTLLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224
           IVNKKNL AGE Q NGNPASLSGKKI++PGPAQEIP+KS  CCR
Sbjct: 181 IVNKKNLIAGENQSNGNPASLSGKKIIIPGPAQEIPSKSK-CCR 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726222|ref|NP_001237375.1| uncharacterized protein LOC100527786 [Glycine max] gi|255633206|gb|ACU16959.1| unknown [Glycine max]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/224 (91%), Positives = 213/224 (95%), Gaps = 1/224 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGG YGD NQK+DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGGSYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDHIPRWLEELR+HAD
Sbjct: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLE QR VPTEDAKEFA+KEGLFFLETSALEATNVE AFMTVLTEIFN
Sbjct: 121 KNIVIILIGNKSDLENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224
           IVNKKNL AG+ QGNGN ASLSGK+I+VPG AQEIP K SMCC+
Sbjct: 181 IVNKKNLAAGDNQGNGNAASLSGKQIIVPGTAQEIP-KRSMCCQ 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567670|ref|XP_003552040.1| PREDICTED: ras-related protein Rab11A-like [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/224 (89%), Positives = 211/224 (94%), Gaps = 1/224 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASG  YGD NQK+DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV
Sbjct: 1   MASGRSYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           IQHKS+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDHIPRWLEELR+HAD
Sbjct: 61  IQHKSIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLE QR VPTEDAKEFA+KEGLFFLETSALEATNVE AFMTVLTEIFN
Sbjct: 121 KNIVIILIGNKSDLENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224
           I+NKKNL A + QGN N ASLSGKKI+VPGPAQEIP K SMCC+
Sbjct: 181 IINKKNLAASDNQGNDNSASLSGKKIIVPGPAQEIP-KRSMCCQ 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522627|gb|AFK49375.1| unknown [Medicago truncatula]

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 214/225 (95%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD NQ+IDYVFKVVLIGDSAVGKSQILARF+RNEFSLDSK+TIGVEFQTRTLV
Sbjct: 1   MASGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFSRNEFSLDSKSTIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 61  IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIIL+GNKSDLE QR VPTEDAKEFA+KEGLFFLETSAL+ATNVE +FMTVLTEI+N
Sbjct: 121 KNIVIILVGNKSDLENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
            VNKKNL A E QGNGN ASL G+KI++PGPAQEIPAKS+MCC++
Sbjct: 181 TVNKKNLAADESQGNGNSASLLGQKIIIPGPAQEIPAKSNMCCQS 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463299|ref|XP_003601931.1| GTP-binding protein [Medicago truncatula] gi|355490979|gb|AES72182.1| GTP-binding protein [Medicago truncatula] gi|388518511|gb|AFK47317.1| unknown [Medicago truncatula]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/224 (90%), Positives = 213/224 (95%), Gaps = 2/224 (0%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MAS G YGD NQKIDYVFKVVLIGDSAVGKSQILARFARN+FS+DSKATIGVEFQTRTLV
Sbjct: 1   MASAG-YGDANQKIDYVFKVVLIGDSAVGKSQILARFARNDFSMDSKATIGVEFQTRTLV 59

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I+HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++R SFDHIPRWLEELR+HAD
Sbjct: 60  IEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHAD 119

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIILIGNKSDLEEQRAVPTEDAKEFA+KEGLFFLETSAL+ATNVE AFMTVLTEIFN
Sbjct: 120 KNIVIILIGNKSDLEEQRAVPTEDAKEFAEKEGLFFLETSALQATNVETAFMTVLTEIFN 179

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224
           IVNKKNL A E QGNGN ASLSGKKI+VPGPAQEIP K SMCC+
Sbjct: 180 IVNKKNLAADENQGNGNSASLSGKKIIVPGPAQEIP-KKSMCCQ 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071438|gb|ACJ84079.1| unknown [Medicago truncatula]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 214/225 (95%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MASGGGYGD NQ+IDYVFKVVLIGDSAVGKSQILARF+ NEFSLDSK+TIGVEFQTRTLV
Sbjct: 1   MASGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFSGNEFSLDSKSTIGVEFQTRTLV 60

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           I HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HAD
Sbjct: 61  IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHAD 120

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           KNIVIIL+GNKSDLE QR VPTEDAKEFA+KEGLFFLETSAL+ATNVE +FMTVLTEI+N
Sbjct: 121 KNIVIILVGNKSDLENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYN 180

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
           IVNKKNL A E QGNGN ASL G+KI++PGPAQEIPAKS+MCC++
Sbjct: 181 IVNKKNLAADESQGNGNSASLLGQKIIIPGPAQEIPAKSNMCCQS 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1381676|gb|AAB97114.1| small GTP-binding protein, partial [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/221 (88%), Positives = 210/221 (95%)

Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           GGYGD NQ+IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK+TIGVEFQTRTLVI HK
Sbjct: 1   GGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHK 60

Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
           +VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHIPRWLEELR+HADKNIV
Sbjct: 61  TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIV 120

Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
           IIL GNK DLE QR VPTEDAKEFA+KEGLFFLETSALEATNVE AF+TVLTEI+NIVNK
Sbjct: 121 IILTGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNK 180

Query: 185 KNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
           KNLTA E QGNGN ASLSG+KI+VPGPAQEIPAK +MCC++
Sbjct: 181 KNLTADENQGNGNSASLSGQKIIVPGPAQEIPAKRNMCCQS 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2171790	226	RABA4a "RAB GTPase homolog A4A	1.0	0.995	0.862	7.9e-101
TAIR|locus:2140079	224	RABA4B "RAB GTPase homolog A4B	0.982	0.986	0.811	1.8e-94
TAIR|locus:2082269	222	RABA4D "RAB GTPase homolog A4D	0.955	0.968	0.746	5e-83
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.946	0.955	0.745	3.2e-81
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.897	0.943	0.631	2e-65
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.822	0.864	0.675	5.2e-65
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.933	0.967	0.598	5.2e-65
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.906	0.944	0.617	6.7e-65
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.933	0.967	0.615	6e-64
ASPGD|ASPL0000062894	210	srgE [Emericella nidulans (tax	0.924	0.990	0.591	7.6e-64

TAIR|locus:2171790 RABA4a "RAB GTPase homolog A4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 195/226 (86%), Positives = 210/226 (92%)

Query:     1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
             M SGGGYGDP+QKIDYVFKVVLIGDSAVGKSQILAR+AR+EFSLDSKATIGVEFQTRTLV
Sbjct:     1 MTSGGGYGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLV 60

Query:    61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
             I HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI+RRQ+FDHIPRWLEELR+HAD
Sbjct:    61 IDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHAD 120

Query:   121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
             KNIVIILIGNKSDL +QRA+PTEDAKEFA+KEGLFFLETSA  ATNVE+AF TVLTEIFN
Sbjct:   121 KNIVIILIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFN 180

Query:   181 IVNKKNLTAGEGQGNGNPASLSGKKI-LVPGPAQEIPAKSSMCCRT 225
             IVNKK+L A E Q NGNP SL+GKKI +VPGP Q IP KS+MCC +
Sbjct:   181 IVNKKSLAASEDQENGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS 226

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2140079 RABA4B "RAB GTPase homolog A4B" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 181/223 (81%), Positives = 205/223 (91%)

Query:     1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
             MA GGGYG  + K+DYVFKVVLIGDSAVGKSQ+LARFAR+EFS+DSKATIGVEFQTRTL 
Sbjct:     1 MAGGGGYGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLS 60

Query:    61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
             I+ KS+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+++R++F+HIPRWLEELR+HAD
Sbjct:    61 IEQKSIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHAD 120

Query:   121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
             KNIVIILIGNKSDLE+QRAVPTEDAKEFA+KEGLFFLETSAL ATNVEN+F T++T+I+N
Sbjct:   121 KNIVIILIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYN 180

Query:   181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
              VNKKNL A EG  N NP SL+GKKIL+PG  QEIPAK+S CC
Sbjct:   181 TVNKKNL-ASEGDSN-NPGSLAGKKILIPGSGQEIPAKTSTCC 221

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2082269 RABA4D "RAB GTPase homolog A4D" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 162/217 (74%), Positives = 189/217 (87%)

Query:     7 YGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV 66
             YGD NQKIDYVFKVVLIGDSAVGK+Q+LARFARNEFS+DSKATIGVEFQT+TLVI +K+V
Sbjct:     5 YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTV 64

Query:    67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII 126
             KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+++RQSFDH+ +WLEELR HADKNIVI+
Sbjct:    65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIM 124

Query:   127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
             LIGNK DL   RAVPTEDA+EFAQ+E LFF+ETSALEATNVE AF+T+LTEI+ I++KK+
Sbjct:   125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKS 184

Query:   187 LTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             LTA +   +GN + L G +I++P   QE   K   CC
Sbjct:   185 LTADDDDADGNSSLLKGTRIIIPSE-QE-SGKRGGCC 219

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0070382 "exocytic vesicle" evidence=IDA

GO:0048868 "pollen tube development" evidence=IGI;RCA

GO:0019900 "kinase binding" evidence=IPI

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/216 (74%), Positives = 186/216 (86%)

Query:    11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
             NQKIDYVFKVVLIGDSAVGKSQ+LARF+RNEFS++SKATIGVEFQTRTL I  K++KAQI
Sbjct:     9 NQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQI 68

Query:    71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
             WDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDH+ RWLEELR HADKNIVI+LIGN
Sbjct:    69 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGN 128

Query:   131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
             K+DL   RAVPTEDAKEFAQ+E LFF+ETSAL++ NVE +F+TVLTEI+ IV+KKNL A 
Sbjct:   129 KTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVAN 188

Query:   191 E-GQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225
             E G+  G+ + L G KI+V G  +E  +K   CC T
Sbjct:   189 EEGESGGDSSLLQGTKIVVAG--EETESKGKGCCGT 222

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 132/209 (63%), Positives = 164/209 (78%)

Query:    15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
             DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR+L +  K +KAQIWDTA
Sbjct:    11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIWDTA 70

Query:    75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
             GQERYRA+TSAYYRGAVGA+LVYD++R  +F+++ RWL ELR H D NIV++L+GNKSDL
Sbjct:    71 GQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNKSDL 130

Query:   135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
                 AV TEDAK FA+ E L+F+ETSALE+TNVENAF  VLT+I+++V+KK + AGE  G
Sbjct:   131 RHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAGEDSG 190

Query:   195 NGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             N  P+   G+KI V   A     K + CC
Sbjct:   191 NV-PSK--GEKIDVDVSA----VKKTGCC 212

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 125/185 (67%), Positives = 155/185 (83%)

Query:    11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
             + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQI
Sbjct:     6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query:    71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
             WDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+F+++ RWL ELR HAD NIVI++ GN
Sbjct:    66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGN 125

Query:   131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
             KSDL   R+V  ED +  A+KEGL FLETSALEATN+E AF T+L+EI++I++KK L A 
Sbjct:   126 KSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKALAAQ 185

Query:   191 EGQGN 195
             E  GN
Sbjct:   186 EAAGN 190

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 128/214 (59%), Positives = 171/214 (79%)

Query:    10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
             P+++ DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL ++ ++VKAQ
Sbjct:     5 PDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQ 64

Query:    70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129
             IWDTAGQERYRA+TSAYYRGA+GA+LVYD+++  +F+++ RWL+ELR HAD NIVI+LIG
Sbjct:    65 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIG 124

Query:   130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 189
             NK+DL+  RAV TEDA+ +A+KEGL F+ETSALEA NVE AF T+L+E++ I++KK++++
Sbjct:   125 NKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISS 184

Query:   190 GEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
              +   N N     G+ I V   + E  AK   CC
Sbjct:   185 DQTTANANIKE--GQTIDVAATS-ESNAKKP-CC 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 129/209 (61%), Positives = 164/209 (78%)

Query:    15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
             DY+FKVVLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF TRTL +  K VKAQIWDTA
Sbjct:    11 DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTA 70

Query:    75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
             GQERYRA+TSAYYRGAVGA+LVYD++RR +F+++ RWL+EL++H D NIV++L+GNKSDL
Sbjct:    71 GQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDL 130

Query:   135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
                 AVPTED K +A++E L F+ETSALEATNVE+AF  VLT+I+ I +KK + AGE   
Sbjct:   131 RHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGE--- 187

Query:   195 NGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             +GN +   G+KI V      +  K   CC
Sbjct:   188 DGNASVPKGEKIEVKNDVSAL--KKLGCC 214

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 131/213 (61%), Positives = 162/213 (76%)

Query:    11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
             +Q+ DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRT  ++ K++KAQI
Sbjct:     6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQI 65

Query:    71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
             WDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GN
Sbjct:    66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 125

Query:   131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
             KSDL   R+V  ED +  A+KEGL FLETSALEATNVE AF T+L EI++I++KK L A 
Sbjct:   126 KSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQ 185

Query:   191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             E     +     G  I V   +    AK + CC
Sbjct:   186 EAAAANSAIPGQGTTINVDDTSGG--AKRA-CC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ASPGD|ASPL0000062894 srgE [Emericella nidulans (taxid:162425)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 126/213 (59%), Positives = 164/213 (76%)

Query:    11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
             N + D++FKVVLIGDS  GKS +L+RF RNEF+LDSK+TIGVEF TR++ +  K++KAQI
Sbjct:     3 NDEYDFLFKVVLIGDSGTGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIKAQI 62

Query:    71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
             WDTAGQERYRA+TSAYYRGAVGA+LVYDIS+ Q++D++ RWL+ELR HAD NIVI+L+GN
Sbjct:    63 WDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLVGN 122

Query:   131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
             KSDL   RAVPTE+AK+FA +  L F+ETSAL+A+NVE AF  +LTEI+ IV+ K L   
Sbjct:   123 KSDLRHLRAVPTEEAKQFASENNLSFIETSALDASNVELAFQNILTEIYRIVSSKAL--- 179

Query:   191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             EG+  G  AS+  ++ ++     +       CC
Sbjct:   180 EGESGG--ASVGERRQIIDIEKTQDTENKGGCC 210

GO:0034498 "early endosome to Golgi transport" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0071852 "fungal-type cell wall organization or biogenesis" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40522	RB11D_TOBAC	No assigned EC number	0.8693	0.9777	0.9909	N/A	no
Q40520	RB11C_TOBAC	No assigned EC number	0.8603	0.9777	0.9909	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.5818	0.9511	0.9861	N/A	no
P25766	RLGP1_ORYSJ	No assigned EC number	0.7678	0.9866	0.9823	no	no
Q9FE79	RAA4C_ARATH	No assigned EC number	0.7453	0.9466	0.9551	no	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.5760	0.9466	0.9861	yes	no
Q40195	RB11E_LOTJA	No assigned EC number	0.6470	0.8266	0.8532	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.6036	0.96	0.9908	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.875	0.9955	0.9911	N/A	no
Q9FJN8	RAA4A_ARATH	No assigned EC number	0.8628	1.0	0.9955	yes	no
Q40193	RB11C_LOTJA	No assigned EC number	0.5972	0.9111	0.9490	N/A	no
P62494	RB11A_RAT	No assigned EC number	0.5760	0.9466	0.9861	yes	no
Q9SMQ6	RAA4B_ARATH	No assigned EC number	0.8246	0.9288	0.9330	no	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.5760	0.9466	0.9861	yes	no
P36412	RB11A_DICDI	No assigned EC number	0.5280	0.9111	0.9579	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.5760	0.9466	0.9861	yes	no
P17610	YPT3_SCHPO	No assigned EC number	0.5876	0.9111	0.9579	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5720	0.9422	0.9724	N/A	no
Q9LH50	RAA4D_ARATH	No assigned EC number	0.7373	0.9555	0.9684	no	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.5760	0.9466	0.9861	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5570	0.9466	0.9770	N/A	no
P38555	YPT31_YEAST	No assigned EC number	0.5586	0.9288	0.9372	yes	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.5860	0.9333	0.9722	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.5760	0.9466	0.9861	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6810	0.8222	0.8644	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.5760	0.9466	0.9861	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.5760	0.9466	0.9861	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.5760	0.9466	0.9861	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-120
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-101
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-101
pfam00071	162	pfam00071, Ras, Ras family	6e-90
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-88
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-76
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-74
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-72
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-72
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-70
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	7e-69
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-66
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-64
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-64
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-62
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-61
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-58
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-55
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-54
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-52
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-51
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-51
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-48
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-47
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-45
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-45
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-44
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-43
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-43
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-42
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-39
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-38
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-38
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-37
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-37
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-37
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-36
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-35
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-33
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-32
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-30
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	7e-30
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-29
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-29
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-29
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-28
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	8e-28
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-27
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-26
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-25
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-25
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-25
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-23
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-23
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-23
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-22
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-21
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-20
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-19
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-18
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-17
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-17
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-17
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-16
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	5e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-14
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-13
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-12
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	6e-11
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-10
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-10
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	7e-10
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	8e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-10
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	5e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-08
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-07
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	1e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	3e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	1e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	9e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.003
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.004
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.004

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  339 bits (871), Expect = e-120
 Identities = 117/165 (70%), Positives = 144/165 (87%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK+VLIGDS VGKS +L+RF RNEF+LDSK+TIGVEF TRT+ I  K++KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYRA+TSAYYRGAVGA+LVYDI+++ +F+++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
              RAVPTE+AK FA+K GL F+ETSAL+ TNVE AF  +LTEI+
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  291 bits (747), Expect = e-101
 Identities = 96/164 (58%), Positives = 127/164 (77%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK++LIGDS VGKS +L+RF   +FS   K+TIGV+F+T+T+ +  K VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++TS+YYRGAVGA+LVYDI+ R+SF+++  WL+ELR +A  N+VI+L+GNKSDLEEQ
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
           R V  E+A+ FA++ GL F ETSA   TNVE AF  +  EI   
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  292 bits (748), Expect = e-101
 Identities = 126/188 (67%), Positives = 153/188 (81%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQI
Sbjct: 6   DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           KSDL   R+V  ED +  A+KEGL FLETSALEATNVE AF T+L EI++I++KK L A 
Sbjct: 126 KSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQ 185

Query: 191 EGQGNGNP 198
           E   N   
Sbjct: 186 EAAANSGL 193

Length = 216

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  261 bits (669), Expect = 6e-90
 Identities = 86/162 (53%), Positives = 117/162 (72%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD  VGKS +L RF +N+F  +   TIGV+F T+T+ +  K+VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           +RA+   YYRGA G +LVYDI+ R SF+++ +WLEE+  HAD+N+ I+L+GNK DLE+QR
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            V TE+ +  A++ GL F+ETSA    NVE AF  +  EI  
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  256 bits (656), Expect = 5e-88
 Identities = 89/157 (56%), Positives = 126/157 (80%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VLIGDS VGK+ +L RF  N+FS + K+TIGV+F+++T+ +  K VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++TS+YYRGA GA+LVYD++ R+SF+++ +WL EL+ +A  NI IIL+GNKSDLE++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V TE+A++FA++ GL F ETSA    NV+ AF ++
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  226 bits (579), Expect = 4e-76
 Identities = 85/164 (51%), Positives = 117/164 (71%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R H++ N+ I+LIGNK DLE
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  220 bits (563), Expect = 9e-74
 Identities = 81/157 (51%), Positives = 112/157 (71%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GDS+VGKS I+ RF +NEFS + ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RYR++   YYRGA  A++VYDI+  +SF+    W++EL+ H   NIVI L GNK+DLE +
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V TE+A+E+A + GL F+ETSA    NV   F  +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  217 bits (554), Expect = 2e-72
 Identities = 79/164 (48%), Positives = 120/164 (73%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGKS +L RF+ + F+    +TIG++F+ RT+ +  K +K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T++YYRGA+G +LVYDI+  +SF++I  W+  +  HA +++  +L+GNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           EE+R V  E+ +  A++ G+ FLETSA    NVE AF+T+  +I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  217 bits (554), Expect = 2e-72
 Identities = 85/163 (52%), Positives = 125/163 (76%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K+VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +++ V   +AKEFA + G+ FLETSA  ATNVE AFMT+  EI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  211 bits (539), Expect = 4e-70
 Identities = 87/165 (52%), Positives = 118/165 (71%), Gaps = 1/165 (0%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK++LIGDS VGK+ ++ RF    FS     TIGV+F  +TL IQ K VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T +YYR A GA++ YDI+RR SF+ +P W+EE+  +   N+V++LIGNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFF-LETSALEATNVENAFMTVLTEI 178
           EEQR V  E+A   A+  G+   LETSA E++NVE AF+ + TE+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  208 bits (530), Expect = 7e-69
 Identities = 86/164 (52%), Positives = 116/164 (70%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VI LIGNK+DLE
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            QR V  E+AK+FA + GL FLE SA    NVE+AF+    +I+
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  201 bits (514), Expect = 2e-66
 Identities = 87/155 (56%), Positives = 112/155 (72%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK ++IG +  GKS +L +F  N+F  DS  TIGVEF +R + +  KSVK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R+VT +YYRGA GA+LVYDI+ R+SF+ +  WL + R+ A  +IVIIL+GNK DLE+ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           R V   +A  FAQ+ GL FLETSAL   NVE AF+
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  199 bits (506), Expect = 1e-64
 Identities = 93/214 (43%), Positives = 131/214 (61%), Gaps = 12/214 (5%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I +K +K QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+LIGNK DL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN-----IVNKKNLTA 189
             +RAV TE+ ++FA++ GL F+E SA  A NVE AF+    +I+      + +  N + 
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESY 183

Query: 190 GEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
           G   G G     S       G      ++   CC
Sbjct: 184 GIKVGYGAIPGAS-------GGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  195 bits (498), Expect = 6e-64
 Identities = 76/162 (46%), Positives = 112/162 (69%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K++LIGDS VGKS +L RF  + F  D  +TIGV+F+ +T+ +  K VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R+R +TS+YYRGA G +LVYD++RR +FD++  WL EL +++   + V +L+GNK D +E
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKID-KE 119

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V  E+ ++FA+K  + F+ETSA     V+ AF  ++ +I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  193 bits (492), Expect = 2e-62
 Identities = 90/212 (42%), Positives = 130/212 (61%), Gaps = 6/212 (2%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTA 74
           Y F++++IGDS VGKS +L RF    F+  S  T+GV+F +R + I+    +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSD 133
           GQER+R++T +YYR +VG +LV+DI+ R+SF+H+  WLEE RSH      V IL+G+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG--- 190
           LE QR V  E+A++ A+  G+ ++ETSA    NVE AF  +  EI+  + +  L A    
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
           +G  +G PA  +        P    P KS  C
Sbjct: 181 DGVKSGFPAGRAFSLEERS-PTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  187 bits (478), Expect = 7e-61
 Identities = 63/161 (39%), Positives = 110/161 (68%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+V +GD +VGK+ I+ RF  + F    +ATIG++F ++T+ +  K+V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++  +Y R +  A++VYDI+ RQSFD+  +W++++R     +++I+L+GNK+DL ++
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V TE+ ++ A++    F+ETSA    NV+  F  +   +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  180 bits (459), Expect = 5e-58
 Identities = 72/164 (43%), Positives = 113/164 (68%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK+VLIG++ VGK+ ++ RF +  F     ATIGV+F  +T+ I+ + +K QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R++T +YYR A   +L YDI+  +SF  +P WL E+  +A+  ++ IL+GNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            E+R V  + A+EF+  + +++LETSA E+ NVE  F+ +   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  175 bits (445), Expect = 2e-55
 Identities = 85/190 (44%), Positives = 122/190 (64%), Gaps = 3/190 (1%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS YYRG  G ++VYD++  +SF ++ RWL+E+  + D ++  +L+GNK+D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDD 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
            E++ V TEDA +FA + G+   ETSA E  NVE  F  +   +  +  KK+  A + Q 
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV--LRAKKDNLAKQQQQ 180

Query: 195 NGNPASLSGK 204
             N      K
Sbjct: 181 QQNDVVKLPK 190

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  171 bits (435), Expect = 2e-54
 Identities = 65/161 (40%), Positives = 99/161 (61%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FKVVL+G+  VGK+ ++ R+  N+F+   ++T    F  +T+ I  K +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY A+   YYR A GA+LVYDI+   SF  + +W++EL+     NI ++++GNK DLE Q
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V   +A+E+A+  G    ETSA     +E  F+++   +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  166 bits (423), Expect = 2e-52
 Identities = 66/164 (40%), Positives = 107/164 (65%), Gaps = 5/164 (3%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ + +  + V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSD 133
           R++++  A+YRGA   +LVYD++  +SF+ +  W +E    A     +N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 134 LEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLT 176
           LEE+R V T+ A+++ + +G + + ETSA EA NV+ AF T+  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  164 bits (416), Expect = 1e-51
 Identities = 66/155 (42%), Positives = 108/155 (69%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           ERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  +IL+GNK D+E+
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           +R V  E  ++ A + G  F E SA E  NV+  F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  163 bits (414), Expect = 5e-51
 Identities = 75/162 (46%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           FKV+L+GDS VGK+ +L RF    F   S  AT+G++F  + + +    VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           ER+R+VT AYYR A   +L+YD++ + SFD+I  WL E+  +A  ++VI+L+GNK+D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  ED +  A++ G+ F+ETSA    NVE AF  V  E+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  155 bits (394), Expect = 3e-48
 Identities = 72/164 (43%), Positives = 101/164 (61%), Gaps = 5/164 (3%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK+++IGDS VGK+ +  RF    F   ++ATIGV+F+ RT+ I  + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 77  ERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI-ILIGNKSDL 134
           ER+R ++   YYR     + VYD++   SF  +P W+EE   H+  N V  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSA---LEATNVENAFMTVL 175
            EQ  VPT+ A+ FA    +   ETSA    E  +VE  FMT+ 
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  153 bits (389), Expect = 1e-47
 Identities = 74/161 (45%), Positives = 108/161 (67%), Gaps = 1/161 (0%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           F+++LIGDS VGK+ +L RF  NEF     +TIGV+F+ +T+ +    V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY+ +T  YYR A G  LVYDIS  +S+ HI +W+ ++  +A + +  ILIGNK+D E++
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E   + A++ G+ F ETSA    N++ +F T LTE+
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF-TRLTEL 160

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  148 bits (376), Expect = 2e-45
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++G   VGKS +  RF   EF  +   TI  +   + +V+  ++    I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           + A+   Y R   G +LVY I+ R+SF+ I    E+ LR    +++ I+L+GNK DLE +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V TE+ +  A++ G  FLETSA    N++  F T++ EI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  148 bits (376), Expect = 3e-45
 Identities = 69/172 (40%), Positives = 111/172 (64%), Gaps = 11/172 (6%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS--------- 65
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 66  -VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNI 123
            V  Q+WDTAGQER+R++T+A++R A+G +L++D++  QSF ++  W+ +L++HA  +N 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
            I+LIGNK+DL +QR V    A+E A K G+ + ETSA    NVE A  T+L
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  147 bits (374), Expect = 1e-44
 Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 19/213 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQ 76
           FKV++IGD  VGK+ I+ R+    FS   KATIGV+F  + +       V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH----ADKNIVIILIGNKS 132
           ER+  +T  YY+GAVGA++V+D++R  +F+ + +W  +L S       + I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 133 DLEEQR-AVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           DL+++R A   E   +F ++ G + + ETSA E  N+E A M  L +  NI+        
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEA-MRFLVK--NIL----KNDK 173

Query: 191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
             Q                   +   +KS  CC
Sbjct: 174 GLQSPEPDEDNVIDLKQ-----ETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  144 bits (364), Expect = 5e-43
 Identities = 69/196 (35%), Positives = 96/196 (48%), Gaps = 18/196 (9%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
             FK+V++GD  VGK+ +L R   +EF      TIG     +T+    +++K Q+WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
           QE YR++   YYRGA G ++VYD + R+S D     WLEELR  A  ++ I+L+GNK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 135 E------------EQRAVPTEDAKEFAQKEGLF---FLETSA--LEATNVENAFMTVLTE 177
                          R V        A    +     LETSA  L   NV   F  +L +
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 178 IFNIVNKKNLTAGEGQ 193
           +   + K  L     Q
Sbjct: 184 LLEEIEKLVLKNELRQ 199

Length = 219

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  143 bits (362), Expect = 7e-43
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
              GY       D  FK++LIGDS VGKS +L  F  +    D   TIGV+F+ + L + 
Sbjct: 7   QSSGY-------DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVG 58

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHA-D 120
            K +K  IWDTAGQER+R +TS+YYR A G +LVYD++RR++F ++   W +E+  ++ +
Sbjct: 59  GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTN 118

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           ++ V +L+GNK D E +R V  E+    A++ G  FLE SA    NVE  F  +  +I  
Sbjct: 119 QDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
           + +       EG      ++   + IL   P  + P     C
Sbjct: 179 VPS----LLEEG------STAVKRNILKQKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  142 bits (359), Expect = 2e-42
 Identities = 63/162 (38%), Positives = 112/162 (69%), Gaps = 1/162 (0%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +V++IG   VGK+ ++ RF  + F    K+T+GV+F+ +T+ ++ K ++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           + ++TSAYYR A G +LVYDI+++++FD +P+W++ +  +A ++  ++L+GNK D E  R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 139 AVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEIF 179
            +  +  ++FAQ+  G+ F E SA +  NV+  F+ ++ +I 
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  133 bits (335), Expect = 4e-39
 Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+ K +L+GDS VGK +ILA              +G++++T T+++  + VK Q+WDT+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQ R+  +  +Y RGA G +LVYDI+ R SFD I RW++E+  HA   +  IL+GN+  L
Sbjct: 64  GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHL 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
             +R V TE A+ +A++ G+ F E S L   N+  +F    TE+  IV  ++
Sbjct: 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF----TELARIVLMRH 170

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  131 bits (330), Expect = 2e-38
 Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 6/167 (3%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD    ++   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
           D+  +R V TE+A+ + +  G + + ETSA +ATNV  AF   +  +
Sbjct: 125 DI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  130 bits (328), Expect = 2e-38
 Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 3/155 (1%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS--VKAQIWDTAGQ 76
           KV+++G+  VGKS ++ RF +  F+ D K TIGV+F  + + ++     V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           E + A+T AYYRGA   +LV+  + R+SF+ I  W E++ +    +I ++L+  K DL +
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           Q  +  E+A+  A++  L    TS  +  NV   F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  127 bits (322), Expect = 2e-37
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            K+V++GD  VGKS +L R   N+ S+   K      + T  +    K+ K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 77  ERYRAVTSAYYRGAVGAMLVYDI-SRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDL 134
           E Y A+   YYR    ++ V+DI       + I  +  +E+  HA+  + IIL+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176
                + T  A  FA+  G   +  SA    N+++AF  V  
Sbjct: 122 -RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  128 bits (323), Expect = 2e-37
 Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F  D   TI  +   + + I  +     I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            + A+   Y R   G +LVY I+ RQSF+ I ++ E+ LR     ++ I+L+GNK DLE 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V TE+ KE A++ G  FLETSA E  NV+ AF  ++ EI
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  127 bits (321), Expect = 3e-37
 Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F  +   TI  +   + + I  +     I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            + A+   Y R   G +LVY I+ RQSF+ I ++ E+ LR     ++ I+L+GNK DLE 
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V TE+ KE A++ G  FLETSA E  NV+ AF  ++ EI
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  125 bits (317), Expect = 1e-36
 Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 5/166 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+ +G+S VGKS I+ R+    F      TIG+++  + + +++K V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH-----ADKNIVIILIGNKSD 133
           Y  V + +Y+   G +LVYD++ RQSF+ +  WL+E++         +NIV+++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           L + RAV  ++ + +A+ +G  + ETSA     V   F T+ + I 
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  122 bits (308), Expect = 6e-35
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           KVV++G  +VGK+ ++ R+  + F +   + TIG  F  + +V+  + V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY A++  YYRGA  A++ YD++   SF+    W++EL++  +++  I L G KSDL EQ
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIEQ 120

Query: 138 ----RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
               R V   D ++FA +      ETS+    NV+  F  V  +  +  N
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  118 bits (299), Expect = 1e-33
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 6/179 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G  +VGKS +  +F    F      TI   F ++ +  + +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y  +   Y  G  G +LVY ++ R+SF+ +    ++ L     +++ I+L+GNKSDL  +
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
           R V  E+ K+ A+  G  FLE+SA E  NVE AF  ++ EI     K       GQ + 
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI----EKVENPLPPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  116 bits (292), Expect = 6e-33
 Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQLNILDTAGQE 59

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            Y A+   Y+R   G +LV+ I+  +SF  +  + E+ LR   D N+ ++L+GNK DLE+
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E+A   A++ G+ ++ETSA    NV+  F  ++ EI
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  114 bits (286), Expect = 5e-32
 Identities = 52/147 (35%), Positives = 95/147 (64%)

Query: 40  NEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 99
           + F  + ++TIG++F ++TL +    V+ Q+WDTAGQER+R++  +Y R +  A++VYDI
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 100 SRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLET 159
           + RQSF++  +W++++ +   K+++I L+GNK+DL + R V  E+  + AQ+    F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 160 SALEATNVENAFMTVLTEIFNIVNKKN 186
           SA    N++  F  +  ++ N+ N  +
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPNLDNSNS 149

Length = 176

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  114 bits (286), Expect = 6e-32
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            +K+V++G   VGKS +  +F ++ F  D   TI   + T+   I  +  +  I DTAGQ
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLE 135
           E + A+   Y R   G +LV+ ++ R SF+ + ++  + LR        +IL+GNK+DLE
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
            QR V  E+ +E A++  + ++ETSA +  NV+ AF 
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFH 157

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  113 bits (283), Expect = 2e-31
 Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++GD +VGK+ ++ RF ++ F  + KATIGV+F+     +       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLE-- 135
           ++ + S YYRGA   ++V+D++   S +H  +WLE+ L+ +   ++++ L+G K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            Q A+  +DA + A++    +   SAL   NV + F  V +  F
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTF 165

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 4/159 (2%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K++L+GDSAVGKS+++ RF  + +     +T  +         + K++    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           ++ + ++YY  A   +LV+D++R+ ++ ++ +W EELR +  + I  I++ NK DL+   
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKIDLDPS- 119

Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
              T+    FA+K  L     SA + TNV   F   +  
Sbjct: 120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  109 bits (273), Expect = 7e-30
 Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 3/180 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +N F  +   TI   ++ +  VI  ++    I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + VY I+ R SF+ I  + E++    DK+ V +IL+GNK DL+ 
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
           +R V T + +E A+  G+ FLETSA +  NV+ AF  ++ EI     K+++ + + +  G
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI-RKYLKEDMPSQKQKKKG 183

Length = 189

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  107 bits (269), Expect = 2e-29
 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+ R+SF+ I  + E+++   D + V ++L+GNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V T   ++ A+  G+ ++ETSA     VE AF T++ EI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  108 bits (272), Expect = 2e-29
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 5/210 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK-SVKAQIWDTAGQ 76
            K+V++GD A GK+ ++ RFA+  F    K TIG++F +R + +    +V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS---HADKNIVIILIGNKSD 133
           +    +   Y  GA    LVYDI+  QSF+++  WL  ++     ++    ++L+GNK+D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI-VNKKNLTAGEG 192
           LE  R V  E    FAQ+  +  +  SA     V   F  +  E+  + +++  L   + 
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQR 180

Query: 193 QGNGNPASLSGKKILVPGPAQEIPAKSSMC 222
               + +  S + +  P         +SMC
Sbjct: 181 VVKADVSRYSERTLREPVSRSVNKRSNSMC 210

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  106 bits (267), Expect = 4e-29
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            ++  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY     A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 119

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +  P      F +K+ L + E SA    N E  F+
Sbjct: 120 KVKPK--QITFHRKKNLQYYEISAKSNYNFEKPFL 152

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  106 bits (267), Expect = 4e-29
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +N F      TI   ++   + I  +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRK-QVEIDGRQCDLEILDTAGTE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G +LVY ++   S + +    E+ LR     N+ ++L+GNK+DLE+
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 137 QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIV 182
            R V  ED    +Q+ G   F ETSA + TNV+  F+ ++ +I  ++
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIICVI 167

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  105 bits (265), Expect = 1e-28
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD AVGK+ +L  +  N+F  +   T+  +  +  + +  K V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      +L + +    SF+++   W  E++ +   N+ IIL+G K DL + 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 137 ----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     Q+ +  E+ ++ A++ G   ++E SAL    ++  F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  104 bits (260), Expect = 8e-28
 Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD  VGK+ +  +   N F      TI   ++ + +V+  +    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR---SHADKNIVIILIGNKSDLE 135
           Y A+   + R   G +LVY I+ R +F+ + R+ E+++     +  ++ I+++GNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGN 195
            +R V TE+    A++ G  F+E SA    NVE AF T++     +  ++    G   G 
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA---LRQQRQGGQGPKGGP 176

Query: 196 GNPASLSGKKILV 208
                   +K ++
Sbjct: 177 TKKKEKKKRKCVI 189

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  101 bits (254), Expect = 3e-27
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTA 74
           +  ++GD AVGKS ++  F  +   F  +   T G +   +T+ +     SV+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSD 133
           GQE +  +    +       +VYD++   SF++  RW+  +R+H+   +   +L+GNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           L ++R V    A+  AQ   L F ETSA E    E  F
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 99.5 bits (248), Expect = 3e-26
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 4/164 (2%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            +K+V++G   VGKS +  +F  + F      TI   ++T+   I ++     I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQ 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL--RSHADKNIVIILIGNKSDL 134
             + A+   Y R   G ++ Y ++ R SF       +EL  R    ++I ++L+GNK DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSF-QEASEFKELITRVRLTEDIPLVLVGNKVDL 119

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           E+QR V TE+ +  A++    F ETSA     +++AF  ++ EI
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI   ++ + + +  +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G +LVY I+ + +F+ +    E+ LR    +++ +IL+GNK DLE+
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A++ G  FLETSA    NV   F  ++ +I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 97.5 bits (243), Expect = 2e-25
 Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 14/183 (7%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ L+GD+ +GK+ ++ ++   EF  +   T+GV F  +T+ I+   +   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL---- 134
           +  +     + AV  + ++D++R+ + + I  W  + R   +K  + IL+G K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKTAIPILVGTKYDLFADL 120

Query: 135 --EEQRAVPTEDAKEFAQ--KEGLFFLETSALEATNVENAFMTVLTEIFNIVNK--KNLT 188
             EEQ  + T+ A+++A+  K  L F   S   + NV+  F  VL ++F++     + LT
Sbjct: 121 PPEEQEEI-TKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVFDLPLTIPEILT 177

Query: 189 AGE 191
            GE
Sbjct: 178 VGE 180

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           +V++GD AVGK+ +L  +  N F  D   T+   +    + +  K V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 80  RAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDL---- 134
             +    Y      ++ + +    SF+++  +W  E++     N+ IIL+G K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDK 118

Query: 135 --------EEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                   ++Q  V  E  +  A++ G   +LE SAL    V   F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 96.2 bits (240), Expect = 5e-25
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G S VGKS +  RF    F  + +  +   + +R + I  + V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 79  YRAV--TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDL 134
                      R A G +LVY I+ R SFD + + L+ +R     D  I +IL+GNK+DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALE-ATNVENAFMTVLTEIF 179
              R V TE+ ++ A + G  F E SA E    V+N F  +  E+ 
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVR 165

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 21  VLIGDSAVGKSQILARFARNEFSLDSKATIG-VEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           V++G   VGKS +L      E    S       +       +    VK  + DT G + +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 80  -----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
                  +     RGA   +LV D + R+S +        LR    + I IIL+GNK DL
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNKIDL 118

Query: 135 EEQRAV-PTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176
            E+R V      +E A+  G+   E SA     V+  F  ++ 
Sbjct: 119 LEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 95.2 bits (237), Expect = 3e-24
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+V++GD   GK+  + R    EF    + TIGVE            ++   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY     A++++D++ R ++ ++P W  +L     +NI I+L GNK D++ +
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNR 132

Query: 138 RAVPTEDAKE--FAQKEGLFFLETSALEATNVENAFM 172
           +      AK+  F +K+ L + E SA    N E  F+
Sbjct: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 16/176 (9%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK++L+GD  VGK+  + R    EF      T+GVE            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-----KNIVIILIGNKS 132
           ++  +   YY     A++++D++ R ++ ++P W      H D     +NI I+L+GNK 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW------HRDIVRVCENIPIVLVGNKV 123

Query: 133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT 188
           D+++ R V       F +K+ L + + SA    N E  F+ +      + N  NL 
Sbjct: 124 DVKD-RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARR---LTNDPNLV 174

Length = 215

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 91.1 bits (226), Expect = 4e-23
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +KVV++G   VGKS +  +F    F      TI   ++    V    SV  +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSV-LEILDTAGTE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ ++   Y +   G ++VY +  +Q+F  I    ++ +R    + + IIL+GNK DLE 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V + + +  A++ G  F+ETSA   T V   F  ++ ++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 90.3 bits (224), Expect = 7e-23
 Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI  +   + + +  +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ +QSF+ +    E+ LR    +++ +IL+GNK DLE+
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 137 QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
           +R V  E+ +  A++ G   FLETSA    NV+  F  ++ +I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 40/213 (18%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KVVL+GD  VGK+ +L R+    F  D+ +T+G  F  +    Q       IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL---- 134
           +  + S Y RGA   +L YD+S  QS + +      L   A+++ +  ++GNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 135 ---------------EEQRAVPTEDAKEFAQK---------------EGLFFLETSALEA 164
                          E+QR V  EDAK F ++               E + F ETSA   
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETSAKTG 175

Query: 165 TNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGN 197
            NV+  F  +   +  ++  +   A   QG  N
Sbjct: 176 YNVDELFEYLFNLVLPLILAQRAEANRTQGTVN 208

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 87.0 bits (216), Expect = 3e-21
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 17/172 (9%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDT 73
           D   K+V++GD   GK+ +L  +A+  F  +   T+  E    TL + + K ++  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKS 132
           AGQE Y  +    Y      ++ Y +    S D++  +W  E+  H      I+L+G K+
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 133 DLEEQRA------------VPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           DL + +             V  E  +  A+  G   ++E SA    NV+  F
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 83.9 bits (207), Expect = 5e-20
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 23  IGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82
           +GD   GK+  + R    EF     AT+GVE            ++  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 83  TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142
              YY     A++++D++ R ++ ++P W  +L     +NI I+L GNK D+++++    
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKDRKV--- 116

Query: 143 EDAKE--FAQKEGLFFLETSALEATNVENAFM 172
             AK   F +K+ L + + SA    N E  F+
Sbjct: 117 -KAKSITFHRKKNLQYYDISAKSNYNFEKPFL 147

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 82.1 bits (203), Expect = 1e-19
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K VL+GD AVGK+ ++  +  N +  +   T    F    LV   K V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDE 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137
           +  +    Y      +L + +    SF +I  +W+ E+R H  K   IIL+G ++DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPK-APIILVGTQADLRTD 119

Query: 138 ------------RAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                       + V    AK  A+K G   ++E SAL   N++  F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KVV+IGD   GKS +L++    EF  +     G      TL +   +    IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR---WLEELRSHADKNIVIILIGNK 131
            +     + + A   +LVYD++ R+S + + R   WL  LR      I +IL+GNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 78.3 bits (193), Expect = 3e-18
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           ++VV+ G   VGKS ++ RF +  F      TI   ++ + +         QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRW--LEELRSHADKNIVIILIGNKSDL 134
           ++ A+           +LVY I+ +QS + + P +  + E++ +  + I I+L+GNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
              R V + +    A+     F+ETSA    NV+  F  +L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           ++VVL+GDS VGKS +   F    +   +    G +   RT+ +  +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLEE 136
               +  +  +     ++VY ++ R SF+       +LR +   ++I IIL+GNKSDL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 137 QRAVPTED----AKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V  ++    A  F  K    F+ETSA    NV+  F  ++ ++
Sbjct: 121 SREVSVQEGRACAVVFDCK----FIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT 173
                     +Q  V  E+ +  A+K G F +LE SA     V   F  
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEM 169

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (187), Expect = 4e-17
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F   EF  +   T+   + T   V   K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEE 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y  A   ++ + I    S +++  +W+EE+R +   N+ +IL+G K DL + 
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 137 ---------QRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAF 171
                       VP + AK  A+  G   ++E SAL    V++ F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KVV++GD A GK+ +L  F R  F    + T+  E     + +   +V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           +  + S  Y      ML + +    S +++  +WL E+R H    + ++L+  K DL E 
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLREP 119

Query: 138 RAVPTEDAKEFAQKEGLF---------FLETSALEATNVENAF 171
           R          + +EGL          +LE SA     V  AF
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQT-RTLVIQHKSVKAQIWDTAGQE 77
           K++L+G   VGK+ +  +    +F  D  +T G+  Q  +    + K ++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 78  RYRAV------TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK 131
            Y A       + + Y      +LV+D+        +P WL ++++    + V IL+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSPV-ILVGTH 115

Query: 132 SDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169
            D      +  +   +            S      +  
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 73.0 bits (179), Expect = 3e-16
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 14/167 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V +GD AVGK+ +L  +  N F  D   T+   F +  +V+   +V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +    YRGA   +L + +  + S++++  +W+ ELR +A   + I+L+G K DL + 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 138 RAV----PTEDAKEFAQKEGL-------FFLETSALEATNVENAFMT 173
           +      P       AQ E L        ++E S+    NV+  F  
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 70.3 bits (172), Expect = 5e-15
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           ++V +G + VGK+ ++ RF  + F    + T+  E  ++   +    V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           + A+     +      LVY +   +SF+ + R  EE L    DK + I+++GNK D   +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 138 RAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTVLTE 177
           R V   DA    + +    F+E SA +  NV   F  +L +
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +++V++G S VGK+ I++RF    F      TI  +F  +   I+ +  +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 78  RYRAVTS-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELR---------SHADKNIVIIL 127
            + A+   +   G V  +LV+ +  R+SF+ + R  E++          +  +  I +++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 128 IGNKSDLEEQRAVPTEDAKEF-AQKEGLFFLETSALEATNVENAFMTVLT 176
            GNK+D +  R V  ++ ++     E   + E SA + +N++  F  + +
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N F  +   T+   +  +T V   ++V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE 63

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSD---- 133
           Y  + +  Y      ++ + I+   S++++  +W  E+  H   N+ I+L+G K D    
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDLRND 122

Query: 134 ------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
                 L+EQ   P    +  A   Q   + +LE SAL    V+  F   +  + N    
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 185 KN 186
           K+
Sbjct: 183 KD 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GDS  GK+ +L  FA++ F  +   T+  E  T +  +  + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  V    Y  +   ++ +DISR ++ D +  +W  E+R     N  ++L+G KSDL   
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 138 RAVPTEDAKE 147
            +  TE + +
Sbjct: 121 LSTLTELSNK 130

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G    GK+ IL +    E    +  TIG  F   T  +++K+VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVV-TTIPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R +   YY    G + V D S R+  +     L +L +  + K   ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 138 RAVPTEDAKEF-----AQKEGLFFLETSALEATNVENAF 171
               +E  +         +        SA+    ++   
Sbjct: 116 L-TESELIELLGLESIKGRRWHIQ-PCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 22/165 (13%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLD-----SKATIGVEFQTRTLVIQHKSVKAQIWDT 73
           ++VLIGD  VGKS ++      EF  +      + TI  +          + V   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-------ERVPTTIVDT 56

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKS 132
           + + + RA  +A  R A    LVY + R  + + I  +WL  +R      + IIL+GNKS
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 133 DL-EEQRAVPTEDA-----KEFAQKEGLFFLETSALEATNVENAF 171
           DL +       E+       EF + E    +E SA    NV   F
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET--CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
           Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 134 ------LEEQRAVP--TEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                 L+E++  P         A++ G   +LE SAL    ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GDS  GK+ +L  FA++ F  +   T+  E  T +  I  + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDL 134
           Y  V    Y  +   ++ +DISR ++ D + + W  E++     N  ++L+G KSDL
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 11/137 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E S+ +  TIG   +T    + +K++   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R +   YY    G + V D + R   D     L  + +  + ++ VI++  NK DL + 
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD- 128

Query: 138 RAVPTEDAKEFAQKEGL 154
                  A E  +K GL
Sbjct: 129 ----AMKAAEITEKLGL 141

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL--- 134
           Y  V    Y  +   +L +DISR + FD  + +W  E+  +   +  I+LIG K+DL   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTD 132

Query: 135 ---------EEQRAVPTEDAKEFAQKEGL-FFLETSAL 162
                    ++Q  +  E     A++ G   +LE SA 
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAF 170

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +    E    +  TIG  F   T+   +K+VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--TYKNVKFTVWDVGGQE 69

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R +   Y+      + V D + R   +     L  L +  +  +  ++++ NK DL  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 65

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADK---NIVIILIGNKSDL 134
            R +   YY G  G + V D + R   D I    +EL R   D+   + ++++  NK DL
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADR---DRIDEARQELHRIINDREMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 19  KVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +V+L+G DSA GKS +L +    E  + +  T+G  F    L ++ K +   +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKLKHAEL-VTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQE 55

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDL 134
           + R V   Y     G + V D S     D   + L+  L++   K + ++L+ NK DL
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +A + F  +   T+   +   ++ +  K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LIG + DL +
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 137 ------------QRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAFMTVLTEIF 179
                       ++ +  E  ++ A++ G   ++E SAL    ++  F   +  I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 38/189 (20%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKAT--------------IGVEFQTRTL-VIQ 62
            K V++GD+AVGK++++   A N+     +                +  E   R+  V+ 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADK 121
             SV  ++WDT G +  +    AY R  V  +L + I+   S  ++   W  E+R     
Sbjct: 63  GVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFC-P 119

Query: 122 NIVIILIGNKSDL-------------------EEQRAVPTEDAKEFAQKEGLFFLETSAL 162
            + +IL+G K DL                   +    +P E  +  A++ G+ + ETS +
Sbjct: 120 RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVV 179

Query: 163 EATNVENAF 171
               V++ F
Sbjct: 180 TQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDL--- 134
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 120

Query: 135 ---------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAF 171
                     +Q+ +  E  ++ A+    + ++E SAL    ++N F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD+  GK+ +L  FA++ +      T+  E  T +  I    ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
           Y  V    Y  +   ++ +DISR ++ D +  +W  E +     N  ++L+G K D    
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVGCKLDMRTD 120

Query: 134 ------LEEQRAVP 141
                 L +QR +P
Sbjct: 121 LSTLRELSKQRLIP 134

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +VV +G    GK+ IL +  ++EF +    TIG   +T    +++K++K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R +   YY      + V D S R         L +L +  + ++ ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG- 114

Query: 138 RAVPTEDAKEF 148
            A+  E+  E 
Sbjct: 115 -ALSVEEMTEL 124

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 19/165 (11%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSK--------ATIGVEFQTRTLVIQHKSVKAQIW 71
           V+++G    GK+  L +  + +FS + K         T+G+   T    I+    +   W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT----IEVGKARLMFW 56

Query: 72  DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGN 130
           D  GQE  R++   YY  + G + V D + R+ F+      E+ + + A + + ++++ N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 131 KSDLEEQRAVPT-----EDAKEFAQKEGLFFLETSALEATNVENA 170
           K DL +  +V       +D      +        SALE   VE  
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIG--VEFQTRTLVIQHKSVKAQIWDTAG 75
           +KV+++G    GK+ IL +F   E  + +  TIG  VE       I +K+++  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
           QE  R+  + YY      +LV D + R+        L ++ +H D +  V++++ NK DL
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Query: 135 EE 136
           + 
Sbjct: 129 KG 130

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD----- 72
            +V ++G   VGK+ I+ +F   EF  +   T         +V+  +     I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 73  ----TAGQE----RYRAV--TSAYYRGAVGAMLVYDISRRQSFDHIP---RWLEELRSHA 119
               TAGQE    R+R +  + A+       +LVYDI    SF ++    + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 120 DKNIVIILIGNKSDLEEQRAVP 141
           +K   I+++GNK D +  R  P
Sbjct: 114 NKEPPIVVVGNKRDQQRHRFAP 135

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 34/176 (19%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-----QHKSVKAQIWDT 73
           KV+++GDS VGKS ++    +N+   +   T+G     R         + K+   ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 74  AGQ----ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRW-LEELRSH---------- 118
            G     E  ++  + +Y    G + V+D++ ++S  ++ RW LE L             
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 119 --------ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166
                   A   + +++IG K D         E  + +      F  E    E  N
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLD------QIPEAKRNWVLTRTAFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 12/154 (7%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           + L+G    GK+ ++   A  +FS D+  T+G  F  R +   + ++K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 80  RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL--RSHADKNIVIILIGNKSDLE-- 135
           R++   Y RG    + V D + R+  +     L +L  +   +  I ++++GNK+DL   
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEG-IPLLVLGNKNDLPGA 116

Query: 136 --EQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167
                 +   + K    +E   +   SA E TN+
Sbjct: 117 LSVDELIEQMNLKSITDREVSCY-SISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R +   Y++   G + V D + R+        L+ + +  + ++ V+++  NK DL   
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116

Query: 138 RAVPTEDAKEFAQKEGLFFL 157
            +     A E   K GL  L
Sbjct: 117 MS-----AAEVTDKLGLHSL 131

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
            R +   YY+   G + V D + R+        LE + S  + ++ V+++  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 24/172 (13%)

Query: 19  KVVLIGDSAVGKS------------QILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV 66
           K+V+IG    GK+               A  +          T+ ++F +  L       
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG-- 69

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII 126
              ++ T GQER++ +     RGAVGA+++ D SR  +F H    ++ L S   +N + +
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS---RNPIPV 124

Query: 127 LIG-NKSDLEEQRAVPTEDAKEFAQKE--GLFFLETSALEATNVENAFMTVL 175
           ++  NK DL +    P E  +E  + E   +  +E  A E     +    +L
Sbjct: 125 VVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 41/172 (23%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------KSVKA 68
           +V+++GDS VGKS ++    +         TIG      T+ ++H           S+K 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGC-----TVGVKHITYGSPGSSSNSIKG 77

Query: 69  --------QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
                   ++WD +G ERY+   S +Y    G + V+D+S+R++   + +W  E+ +   
Sbjct: 78  DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGT 137

Query: 121 KN------------IVIILIGNKSDL---EEQRAVP---TEDAKEFAQKEGL 154
            +            +  I+IGNK+D+   E  R       + A+++ +K+GL
Sbjct: 138 FSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189

Length = 334

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 21/142 (14%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 79  YRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWL--EELRSHADKNIVIILIGNKS 132
            R +   Y++   G + V D + R    ++ D + R L  +ELR     + V+++  NK 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANKQ 128

Query: 133 DLEEQRAVPTEDAKEFAQKEGL 154
           DL          A E   K GL
Sbjct: 129 DLPNAMN-----AAEITDKLGL 145

Length = 181

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI---QHKSVKAQIWDTA 74
             +V++G  + GK+ +L R   NEF +++  T G  F T  + +     K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADKNIVIILIGNKSD 133
           GQE+ R +  +Y R   G + V D    +  +     L ++ +   ++ + ++++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 134 L 134
           L
Sbjct: 121 L 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G    GK+ IL R    E  + +  TIG   +T    + +K++K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQTS 55

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDL 134
            R     YY      + V D + R   D +     EL +  +    K+ V+++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 135 E 135
            
Sbjct: 113 P 113

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 25/150 (16%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIG-------VEF--QTRTLVIQHKSV 66
           VF   ++G    GKS +L  F    FS ++   TI        VE   Q + L+++    
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGE 63

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH--ADKNIV 124
                + A       + +      V A LVYD S   SF +      E+         I 
Sbjct: 64  D----EEAILLNDAELAAC----DV-ACLVYDSSDPNSFSYCA----EVYKKYFMLGEIP 110

Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGL 154
            + +  K+DL+EQ+        EF +K GL
Sbjct: 111 CLFVAAKADLDEQQQRAEVQPDEFCRKLGL 140

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 14/123 (11%)

Query: 20  VVLIGDSAVGKSQILARFAR-NEFSLDSKATIG--VE-FQTRTLVIQHKSVKAQIWDTAG 75
           ++++G    GK+ I+ +    N  S +   T+G  VE F+         ++    +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKK-------GNLSFTAFDMSG 54

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKS 132
           Q +YR +   YY+   G + V D S R         LE L +H D   + I I+   NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 133 DLE 135
           DL 
Sbjct: 115 DLP 117

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++L+G    GK+ IL + A  + S     T G   +     +Q    K  +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDIS-HITPTQGFNIKN----VQADGFKLNVWDIGGQRK 71

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI-GNKSDLEEQ 137
            R     Y+      + V D + R+ F+   + L EL        V +L+  NK DL   
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT- 130

Query: 138 RAVPTEDAKE 147
            A P E+  E
Sbjct: 131 -AAPAEEVAE 139

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 33/186 (17%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLV---IQHKSVKAQIWD 72
            KVV+IG   VGKS +L      + ++  D   T      TR ++   I    +  ++ D
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT------TRDVIEEDINLNGIPVRLVD 271

Query: 73  TAGQ-------ERY---RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
           TAG        ER    RA  +     A   + V D S       + +    L     K 
Sbjct: 272 TAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDAS-----QPLDKEDLALIELLPKK 324

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182
             II++ NK+DL  +      + +      G   +  SA     ++     +       +
Sbjct: 325 KPIIVVLNKADLVSK-----IELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKGL 379

Query: 183 NKKNLT 188
             +   
Sbjct: 380 GNQEGL 385

Length = 454

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 42/170 (24%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLV---IQHKSVKAQIWD 72
            KVV+ G   VGKS +L   A  + ++  D   T      TR ++   I    +  ++ D
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGT------TRDVIEEEIDLGGIPVRLID 57

Query: 73  TAG------------QER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA 119
           TAG             ER   A+  A        +LV D S     +     LE L   A
Sbjct: 58  TAGLRETEDEIEKIGIERAREAIEEADLV-----LLVVDASEGLDEED----LEILELPA 108

Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169
            K +  I++ NKSDL         DA+  ++  G   +  SA     ++ 
Sbjct: 109 KKPV--IVVLNKSDL-------LSDAEGISELNGKPIIAISAKTGEGIDE 149

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 19/148 (12%)

Query: 19  KVVLIGDSAVGKSQ----ILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           KV+L+G    GKS     I + ++  + +L   ATI VE   ++ V    ++   +WD  
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRD-TLRLGATIDVE---QSHVRFLGNLTLNLWDCP 56

Query: 75  GQERYRAVTSAYYRGA----VGAML-VYDISRRQSFDHIPRW---LEELRSHADKNIVII 126
           GQ+ +        +      VG ++ V+D+  R+  + +      +E L  ++    V +
Sbjct: 57  GQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFV 116

Query: 127 LIGNKSDL--EEQRAVPTEDAKEFAQKE 152
           LI +K DL  E++R    ED KE   +E
Sbjct: 117 LI-HKMDLLSEDERKEIFEDRKEEIIEE 143

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   + S  S  T+G  F  +TL  ++   K  IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDISTIS-PTLG--FNIKTL--EYNGYKLNIWDVGGQK 69

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI-GNKSDL 134
             R+    Y+      + V D S R   +   R L++L          +LI  NK DL
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
           +VK   +D  G E+ R V   Y+    G + + D +  + F      L+ L +  +   V
Sbjct: 62  NVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANV 121

Query: 125 IILI-GNKSDLEEQRAVPTEDAKE 147
            ILI GNK D     AV  E+ +E
Sbjct: 122 PILILGNKIDKP--GAVSEEELRE 143

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
PTZ00099	176	rab6; Provisional	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.84
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.83
PRK05433	600	GTP-binding protein LepA; Provisional	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.8
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.8
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
COG2229	187	Predicted GTPase [General function prediction only	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.78
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
COG0486	454	ThdF Predicted GTPase [General function prediction	99.76
COG1160	444	Predicted GTPases [General function prediction onl	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.74
PRK12736	394	elongation factor Tu; Reviewed	99.74
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.74
COG0218	200	Predicted GTPase [General function prediction only	99.73
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.73
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.73
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.73
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
COG2262	411	HflX GTPases [General function prediction only]	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.71
CHL00071	409	tufA elongation factor Tu	99.71
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.7
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.7
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PRK00049	396	elongation factor Tu; Reviewed	99.68
PLN03126	478	Elongation factor Tu; Provisional	99.67
PTZ00141	446	elongation factor 1- alpha; Provisional	99.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
KOG1145	683	consensus Mitochondrial translation initiation fac	99.66
PLN03127	447	Elongation factor Tu; Provisional	99.65
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
PRK13351	687	elongation factor G; Reviewed	99.64
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.64
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.61
COG0536	369	Obg Predicted GTPase [General function prediction	99.61
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
COG1163	365	DRG Predicted GTPase [General function prediction	99.58
COG3596	296	Predicted GTPase [General function prediction only	99.58
PRK12739	691	elongation factor G; Reviewed	99.58
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.58
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.56
PRK09866	741	hypothetical protein; Provisional	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.56
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.56
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.56
PRK00007	693	elongation factor G; Reviewed	99.54
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.53
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.53
PRK09602	396	translation-associated GTPase; Reviewed	99.52
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.51
KOG0090	238	consensus Signal recognition particle receptor, be	99.48
PRK12740	668	elongation factor G; Reviewed	99.48
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.48
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.47
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.46
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.45
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
PRK14845	1049	translation initiation factor IF-2; Provisional	99.44
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.42
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.42
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.38
PRK13768	253	GTPase; Provisional	99.37
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.35
PTZ00416	836	elongation factor 2; Provisional	99.35
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.35
PRK07560	731	elongation factor EF-2; Reviewed	99.35
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.33
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.32
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.32
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.32
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.31
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.3
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.28
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.28
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.24
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.24
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
PRK09601	364	GTP-binding protein YchF; Reviewed	99.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.23
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.21
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.2
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.19
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.17
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.16
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.15
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.14
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.1
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.1
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.06
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.03
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.97
KOG0410	410	consensus Predicted GTP binding protein [General f	98.97
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.95
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.94
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.94
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.93
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.89
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.88
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.84
PRK12288	347	GTPase RsgA; Reviewed	98.83
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.81
PRK00098	298	GTPase RsgA; Reviewed	98.8
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.8
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.77
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.76
KOG0460	449	consensus Mitochondrial translation elongation fac	98.75
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.74
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.72
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.71
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.69
KOG2486	320	consensus Predicted GTPase [General function predi	98.67
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.66
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.65
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.65
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.63
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.63
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.58
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.58
KOG1143	591	consensus Predicted translation elongation factor	98.57
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.53
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.51
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.51
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.47
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.46
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.46
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.46
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.45
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.45
COG1161	322	Predicted GTPases [General function prediction onl	98.43
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.42
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.4
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.4
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.37
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.37
COG3523	1188	IcmF Type VI protein secretion system component Va	98.37
PRK10416	318	signal recognition particle-docking protein FtsY;	98.36
PRK13796	365	GTPase YqeH; Provisional	98.35
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.35
PRK14974	336	cell division protein FtsY; Provisional	98.35
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.34
PRK12288	347	GTPase RsgA; Reviewed	98.34
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.33
PRK01889	356	GTPase RsgA; Reviewed	98.32
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.31
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.29
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.27
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.27
cd03112	158	CobW_like The function of this protein family is u	98.26
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.23
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.2
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.19
COG1162	301	Predicted GTPases [General function prediction onl	98.18
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.17
PRK12289	352	GTPase RsgA; Reviewed	98.16
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.13
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.12
PRK13796	365	GTPase YqeH; Provisional	98.1
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.08
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.07
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.04
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.03
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
cd03110	179	Fer4_NifH_child This protein family's function is	98.01
PRK13695	174	putative NTPase; Provisional	98.0
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.0
COG1162	301	Predicted GTPases [General function prediction onl	97.97
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
COG0523	323	Putative GTPases (G3E family) [General function pr	97.94
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.94
PRK00098	298	GTPase RsgA; Reviewed	97.94
cd03114	148	ArgK-like The function of this protein family is u	97.9
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.89
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.85
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.84
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.82
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.81
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.8
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.8
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.79
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.75
TIGR00959	428	ffh signal recognition particle protein. This mode	97.75
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.75
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.75
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.73
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.71
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.71
PRK10867	433	signal recognition particle protein; Provisional	97.67
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.66
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.66
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.6
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.58
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.54
cd03111	106	CpaE_like This protein family consists of proteins	97.46
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.46
PF00004	132	AAA: ATPase family associated with various cellula	97.42
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.38
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.37
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.36
KOG2484	435	consensus GTPase [General function prediction only	97.33
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.29
cd02036	179	MinD Bacterial cell division requires the formatio	97.26
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.26
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.25
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.21
PRK08118	167	topology modulation protein; Reviewed	97.19
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.18
PRK07261	171	topology modulation protein; Provisional	97.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.14
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.07
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.04
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.04
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.04
PRK01889	356	GTPase RsgA; Reviewed	97.02
PF05729	166	NACHT: NACHT domain	97.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.99
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.93
PRK10646	153	ADP-binding protein; Provisional	96.92
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.92
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.92
KOG0781	587	consensus Signal recognition particle receptor, al	96.91
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.91
COG0802	149	Predicted ATPase or kinase [General function predi	96.9
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.89
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.88
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.87
PRK06217	183	hypothetical protein; Validated	96.87
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.86
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.84
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.83
PRK04195	482	replication factor C large subunit; Provisional	96.83
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	96.82
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.81
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.81
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.8
smart00382	148	AAA ATPases associated with a variety of cellular	96.79
PRK03839	180	putative kinase; Provisional	96.78
PRK14738	206	gmk guanylate kinase; Provisional	96.77
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.76
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.76
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.75
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.74
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.72
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.71
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.71
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.69
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.69
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.68
PRK14530	215	adenylate kinase; Provisional	96.66
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.65
KOG1533	290	consensus Predicted GTPase [General function predi	96.63
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.61
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.61
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.61
PRK14532	188	adenylate kinase; Provisional	96.61
PRK13949	169	shikimate kinase; Provisional	96.6
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.57
cd02032	267	Bchl_like This family of proteins contains bchL an	96.54
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.53
KOG4181	491	consensus Uncharacterized conserved protein [Funct	96.53
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.53
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.52
PLN03025	319	replication factor C subunit; Provisional	96.52
PRK04296	190	thymidine kinase; Provisional	96.51

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-42  Score=249.41  Aligned_cols=177  Identities=49%  Similarity=0.836  Sum_probs=169.3

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      +...++.+||+|+|+.|||||+|+.||..+.|...+..|.|.++..+.+.++++.+.+++|||+|+++|+++...+++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVEN  169 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  169 (225)
                      |++|+|||+++.+||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++++.++..++++ |+|+||+++.+|++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999989999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 027292          170 AFMTVLTEIFNIVNKKNL  187 (225)
Q Consensus       170 ~f~~l~~~~~~~~~~~~~  187 (225)
                      +|..+...+.+++.....
T Consensus       163 ~F~~la~~lk~~~~~~~~  180 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHVK  180 (205)
T ss_pred             HHHHHHHHHHHhcccCCC
Confidence            999999998887655443

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-40  Score=244.28  Aligned_cols=216  Identities=65%  Similarity=1.018  Sum_probs=195.3

Q ss_pred             CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292            8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY   87 (225)
Q Consensus         8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   87 (225)
                      .+.++..++.+||+++|++++|||-|+.+|..++|.....+|.+.++....+.++++.+..+||||+|+++|++....++
T Consensus         5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY   84 (222)
T KOG0087|consen    5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY   84 (222)
T ss_pred             cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      +.+.++++|||+++..+|+.+.+|+.+++.+...+++++||+||+||.+-+.+..++++.++...+..|+++||.+..+|
T Consensus        85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV  164 (222)
T KOG0087|consen   85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV  164 (222)
T ss_pred             cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence            99999999999999999999999999999999889999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCC--CCCCCCCCCCCcC
Q 027292          168 ENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGP--AQEIPAKSSMCCR  224 (225)
Q Consensus       168 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~cc~  224 (225)
                      ..+|+.++..+++...++..........+ +.+..++++.+.+.  .+....++++||+
T Consensus       165 e~aF~~~l~~I~~~vs~k~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  165 EKAFERVLTEIYKIVSKKQLDENNDPLES-SSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccc-CCCCCCcccccccCCccccccccCCCCCC
Confidence            99999999999999998888766543333 35556666666533  3346667788885

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-39  Score=237.39  Aligned_cols=172  Identities=43%  Similarity=0.756  Sum_probs=163.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|+.+||||||+.|+..+.|.....+|++..+....+..+...+.+.||||+|+++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++.+||..++.|+.++.+...++.-+.||+||+||.+.+++..++++.++...++.|+|+||+++.||+++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888899999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 027292          175 LTEIFNIVNKKN  186 (225)
Q Consensus       175 ~~~~~~~~~~~~  186 (225)
                      .+.+.....+..
T Consensus       163 a~~lp~~~~~~~  174 (200)
T KOG0092|consen  163 AEKLPCSDPQER  174 (200)
T ss_pred             HHhccCcccccc
Confidence            998877654433

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-39  Score=236.15  Aligned_cols=167  Identities=35%  Similarity=0.709  Sum_probs=158.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+|++|+|+.+|||||||++|+.+.+...|.+|+|+++...++.+.+..+.+++|||+|+|+|+++.+.|++++.++|+|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV  101 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV  101 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+|+....|++.++..... ++-++||+||.||.+++++..++....++++++.|+++||+.|.||.++|..|.
T Consensus       102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa  181 (221)
T KOG0094|consen  102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA  181 (221)
T ss_pred             EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence            9999999999999999999888765 488999999999999999999999999999999999999999999999999977


Q ss_pred             HHHHHHHh
Q 027292          176 TEIFNIVN  183 (225)
Q Consensus       176 ~~~~~~~~  183 (225)
                      ..+.....
T Consensus       182 a~l~~~~~  189 (221)
T KOG0094|consen  182 AALPGMEV  189 (221)
T ss_pred             HhccCccc
Confidence            76665543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-39  Score=237.25  Aligned_cols=173  Identities=45%  Similarity=0.839  Sum_probs=168.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +.++.+||+++|+++||||+|+.+|..+.+...+..|.++++...++..++..+.+++|||+|+++|..+...|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +++|||+++..+++.+..|+..+.++...++|.+||+||+|+.+.+++..+..++++.++|+.|+|+||++|.||.++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027292          173 TVLTEIFNIVNKK  185 (225)
Q Consensus       173 ~l~~~~~~~~~~~  185 (225)
                      .|.+.++..+.+.
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999999866554

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=224.66  Aligned_cols=170  Identities=42%  Similarity=0.726  Sum_probs=162.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...+.++||+++|.+|+|||||+.+|..+.+.+....+.+.++..+.+.+++..+++.||||+|+++|+.+.+.|++.+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++|+|||++..++|..+..|++++..++. +++-.++|+||+|....+.++.++..+|++++++.|+|+||++.++|...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999998885 56778999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          171 FMTVLTEIFNI  181 (225)
Q Consensus       171 f~~l~~~~~~~  181 (225)
                      |+.++..+++-
T Consensus       166 FeelveKIi~t  176 (209)
T KOG0080|consen  166 FEELVEKIIET  176 (209)
T ss_pred             HHHHHHHHhcC
Confidence            99999998865

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.3e-37  Score=241.29  Aligned_cols=209  Identities=63%  Similarity=0.970  Sum_probs=177.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            35678999999999999999999999999888888998888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++...+++++++||++|.|++++|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777788888999998999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcCC
Q 027292          173 TVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT  225 (225)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~  225 (225)
                      ++++.+.+....+........ +..++...++++.+.+   ..+.+++|||++
T Consensus       168 ~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~c~~  216 (216)
T PLN03110        168 TILLEIYHIISKKALAAQEAA-ANSGLPGQGTTINVAD---TSGNNKRGCCST  216 (216)
T ss_pred             HHHHHHHHHhhccccccccCc-ccccCcCcCCcccccC---ccCCCCCCCcCC
Confidence            999999987665554443322 2223334455555522   235577779986

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-38  Score=226.46  Aligned_cols=175  Identities=51%  Similarity=0.891  Sum_probs=167.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      +.+.+|++++|+.|||||+|+.+|+...|.+.+..|.|.++....+.+++..+++++|||+|++.|++....|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||+++.++|..+..|+..++++...|..++|++||+|+...+.++.++.+.|+++.++.|+++||+++++|+++|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 027292          174 VLTEIFNIVNKKNLT  188 (225)
Q Consensus       174 l~~~~~~~~~~~~~~  188 (225)
                      ....+++..+..-.+
T Consensus       163 ta~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVFD  177 (216)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999887755443

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.2e-36  Score=231.24  Aligned_cols=166  Identities=37%  Similarity=0.774  Sum_probs=152.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            35899999999999999999999999888899888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |++++++++.+..|+..+......+.|++||+||+|+.+.+.+..++..+++++. ++.|+++||++|.|++++|+++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776668999999999999877888888888888875 788999999999999999999999


Q ss_pred             HHHHHHh
Q 027292          177 EIFNIVN  183 (225)
Q Consensus       177 ~~~~~~~  183 (225)
                      .+.+...
T Consensus       161 ~~~~~~~  167 (202)
T cd04120         161 DILKKMP  167 (202)
T ss_pred             HHHHhCc
Confidence            8876543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-37  Score=215.60  Aligned_cols=213  Identities=44%  Similarity=0.707  Sum_probs=197.9

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG   89 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   89 (225)
                      +.++.++.+|++++|+.|+|||.|+++|+.+.+......+.+.++....+.+.++.++++||||+|+++|++....+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      +-++++|||+++.++++.+..|+...+-....++.+++++||.|+...+++...++..|+++..+.+.++|+.+|++|++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCC
Q 027292          170 AFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC  222 (225)
Q Consensus       170 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  222 (225)
                      .|-...+.++......++++++..+.-+=....-.++..+.+.+...++..+|
T Consensus       162 aFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C  214 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC  214 (214)
T ss_pred             HHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence            99999999999999999999888777666666666677777777777776555

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3e-36  Score=231.40  Aligned_cols=195  Identities=35%  Similarity=0.624  Sum_probs=164.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+..+ +..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888998888877777777 7889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA----DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAF  171 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f  171 (225)
                      ||++++.+++.+..|+..+....    ..+.|++||+||+|+.+.+....+++..+++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886543    2578999999999998656778888999999998 679999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292          172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC  223 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (225)
                      ++|++.+.+..+......+..         ...-+...+.+++++.+  +||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETPE---------DGSVIDLKQTTTKKKSK--GCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCCC---------cccccccccceeccccC--CCC
Confidence            999999987654444333322         13445555656655555  588

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.8e-36  Score=226.92  Aligned_cols=169  Identities=37%  Similarity=0.674  Sum_probs=155.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.+||+|+|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999988888888888888777788888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||++++.+++.+..|+..+..... +.|++||+||.|+.+.+.+..++++.+++..++.|+++||++|.||+++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999999999999977654 8999999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027292          174 VLTEIFNIVN  183 (225)
Q Consensus       174 l~~~~~~~~~  183 (225)
                      +++.+.....
T Consensus       162 l~~~i~~~~~  171 (189)
T cd04121         162 LARIVLMRHG  171 (189)
T ss_pred             HHHHHHHhcC
Confidence            9998876533

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=6.5e-37  Score=220.75  Aligned_cols=172  Identities=36%  Similarity=0.688  Sum_probs=160.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .+...+||+++|++|+|||||++++.+..|...+..+++.++..+.+.+++..+.++||||+|+++|.++...+++.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHHcC-CeEEEeccCCCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEE--QRAVPTEDAKEFAQKEG-LFFLETSALEAT  165 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  165 (225)
                      +++|||++++.+++.+..|..++..+..    ...|+||++||+|+.+  .++++...++.|++..| ++|||+||++..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999887775    4689999999999976  37889999999998876 889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027292          166 NVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~~~  184 (225)
                      ||.++|+.+.+.+++.-..
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999987543

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-36  Score=210.71  Aligned_cols=182  Identities=38%  Similarity=0.745  Sum_probs=172.0

Q ss_pred             CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292            4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT   83 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   83 (225)
                      ++...+..+.-++.+|++|+|...+|||||+.++++..+...+..+.|+++..+++......+.+++|||.|+|.|+.+.
T Consensus         8 ~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT   87 (193)
T KOG0093|consen    8 GASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT   87 (193)
T ss_pred             CCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH
Confidence            45566777788899999999999999999999999999999999999999999998888888999999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      ..++++++++|++||+++.+++..+..|...++.++-.+.|+|+|+||||+.+++.++.+..+.+++++|+.|||+||+.
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~  167 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKE  167 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccc
Confidence            99999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhc
Q 027292          164 ATNVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~~~~~  185 (225)
                      +.+|.++|+.++..+.+.+.+.
T Consensus       168 NinVk~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  168 NINVKQVFERLVDIICDKMSES  189 (193)
T ss_pred             cccHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999998887654

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=4.7e-35  Score=224.38  Aligned_cols=197  Identities=42%  Similarity=0.681  Sum_probs=166.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35689999999999999999999999998888888888888777777788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||++++++++.+..|+..+..... ..|++||+||+|+.+......++...++...+++++++||++|.|+.++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            999999999999999999999877654 7899999999999876667778888899888999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292          174 VLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC  223 (225)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (225)
                      |.+.++....+.....+...+            .-....++..+++.+||
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         162 ITELVLRAKKDNLAKQQQQQQ------------NDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHhhhccCcccccCCc------------cccCccchhccccccCC
Confidence            999998776555333332221            11234455556677798

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-36  Score=211.17  Aligned_cols=208  Identities=39%  Similarity=0.711  Sum_probs=183.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..+..+||+++|..|+|||.|+++|..+-|++....+.+.++..+++.++++.+++++|||+|+++|+++...+++.+|+
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||++...+|+-+.+|+.++.++.+.++--|+|+||+|+.+.+++.....++|+......|.++||++-.+|+.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999988888999999999999889998999999999889999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcC
Q 027292          173 TVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR  224 (225)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  224 (225)
                      .+.-.+....+..........+..+++ ..|++|.+.--.|.+   ..-||+
T Consensus       163 ~~a~rli~~ar~~d~v~~~~a~a~~~~-seg~si~l~s~aqt~---~~~cc~  210 (213)
T KOG0095|consen  163 DLACRLISEARQNDLVNNVSAPAPNSS-SEGKSIKLISYAQTQ---LLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHhccchhhccccCcccc-CCCCcccchhHHHHH---Hhcccc
Confidence            998888877776666554444444333 567777666544433   334664

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.2e-34  Score=223.81  Aligned_cols=207  Identities=41%  Similarity=0.722  Sum_probs=167.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999998888888888887777766 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||++++++++.+..|+..+.+... ...|++||+||+|+.+.+.+..++...+++.+++.++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876653 457889999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCCCCCceeec-CCCCCCCCCCCCCCc
Q 027292          175 LTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILV-PGPAQEIPAKSSMCC  223 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~cc  223 (225)
                      ++.+.+.....+.....+.........-+.-.-+ .-++.--.+.+++||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            9999888766654333333222222222221112 234444556677787

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.9e-35  Score=223.96  Aligned_cols=185  Identities=30%  Similarity=0.514  Sum_probs=156.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988877777766444 3455677888899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      +++..+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+...+..+++..++++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988876543   4789999999999977677777788888888999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292          176 TEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC  223 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (225)
                      +.+..++....                   .+...+++++++++++||
T Consensus       160 ~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQ-------------------GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccC-------------------CCcCCCCCcccccccCce
Confidence            98876654421                   113456677777887787

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=209.95  Aligned_cols=169  Identities=48%  Similarity=0.799  Sum_probs=162.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .+..++.+|+|++|+|||+|+.+|....|..+|..++|.++...++.+++..+.++||||+|++.|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      ++|||+++.++|....+|+.++.+.+. .+|-++|+||.|.++.+.+..++++.|+.+.++.+||+|+++..+++..|+-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999999999999887 7899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027292          174 VLTEIFNIVN  183 (225)
Q Consensus       174 l~~~~~~~~~  183 (225)
                      |.+++++...
T Consensus       164 it~qvl~~k~  173 (198)
T KOG0079|consen  164 ITKQVLQAKL  173 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999998873

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.1e-35  Score=225.75  Aligned_cols=187  Identities=33%  Similarity=0.537  Sum_probs=153.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|.+|||||||+++|..+.+.. +.++.+.++....    ...+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 4666665544332    25678999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE-------------------QRAVPTEDAKEFAQKEG-----  153 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  153 (225)
                      |++++++++.+..|+..+.+....+.|++||+||+|+.+                   .+.+..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888776556799999999999965                   46778889999998876     


Q ss_pred             ---------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292          154 ---------LFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC  223 (225)
Q Consensus       154 ---------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (225)
                               ++|+|+||++|.||+++|..+++.++....++.......+   .           ...-.+++.+|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQ---G-----------TVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh---c-----------cccCCCcccCCCCCC
Confidence                     6799999999999999999999999988776655332221   0           111223677888899

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.3e-34  Score=218.70  Aligned_cols=168  Identities=43%  Similarity=0.784  Sum_probs=152.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998778888888887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+....+++..+++++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766678999999999998767777888888888889999999999999999999999999


Q ss_pred             HHHHHhhc
Q 027292          178 IFNIVNKK  185 (225)
Q Consensus       178 ~~~~~~~~  185 (225)
                      +.++....
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            98764433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.7e-34  Score=221.58  Aligned_cols=168  Identities=26%  Similarity=0.459  Sum_probs=149.4

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+||+|+|+.|||||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3456799999999999999999999999999999899876654 456778899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 027292           93 AMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLE  158 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  158 (225)
                      +|+|||+++.++++. +..|+..+..... +.|++||+||+|+.+            .+.+..++++++++++++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 4899999987664 789999999999964            256788899999999998 5999


Q ss_pred             eccCCCC-CHHHHHHHHHHHHHHHH
Q 027292          159 TSALEAT-NVENAFMTVLTEIFNIV  182 (225)
Q Consensus       159 ~Sa~~~~-~v~~~f~~l~~~~~~~~  182 (225)
                      |||++|. +|+++|..++..+++..
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            9999997 89999999999887643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.7e-34  Score=214.06  Aligned_cols=164  Identities=52%  Similarity=0.903  Sum_probs=151.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888888888777778888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+...+....+++.++++..+++++++||++|.|+.++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776668999999999999877777888899999999999999999999999999999998


Q ss_pred             HHHH
Q 027292          177 EIFN  180 (225)
Q Consensus       177 ~~~~  180 (225)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=3.7e-34  Score=213.52  Aligned_cols=166  Identities=48%  Similarity=0.864  Sum_probs=152.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999999888999888887777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++..++++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766689999999999998766777888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      .+.++.
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.1e-35  Score=207.91  Aligned_cols=209  Identities=32%  Similarity=0.619  Sum_probs=183.4

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ..+...+||+++|..=+|||||+-+++.+.|......+....+..+.+.+.+....+.||||+|+++|.++-+.|++..|
T Consensus         8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn   87 (218)
T KOG0088|consen    8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN   87 (218)
T ss_pred             cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence            45678899999999999999999999999998888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++++|||+++.++|+.+..|..+++......+.+++|+||+|+.+++.+..+++...+..-|+.|+++||+++.|+.++|
T Consensus        88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF  167 (218)
T KOG0088|consen   88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELF  167 (218)
T ss_pred             ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecC-CCCCCCCCCCCCCcC
Q 027292          172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVP-GPAQEIPAKSSMCCR  224 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~cc~  224 (225)
                      +.+...++++..+.+....+.+....+...   .+.+. .+++-...++ +||+
T Consensus       168 e~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r---~~~~iD~e~~a~~sg~-~CC~  217 (218)
T KOG0088|consen  168 ESLTAKMIEHSSQRQRTRSPLSTQPPSTNR---SIRLIDNEAEAERSGK-RCCR  217 (218)
T ss_pred             HHHHHHHHHHhhhcccccCCcCCCCCCccc---chhccCCCcccccccC-CccC
Confidence            999999999998887777666544444443   34444 3334444443 4997

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=4.6e-34  Score=221.38  Aligned_cols=164  Identities=33%  Similarity=0.591  Sum_probs=149.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999988888877777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      ||++++++++.+..|+..+.+...   .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887653   35789999999999876778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027292          174 VLTEIFNI  181 (225)
Q Consensus       174 l~~~~~~~  181 (225)
                      +++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5.5e-34  Score=217.15  Aligned_cols=164  Identities=46%  Similarity=0.774  Sum_probs=147.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988764 5667766677666677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++|+++||++|.|++++|++|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877668999999999999766677778888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          177 EIFNI  181 (225)
Q Consensus       177 ~~~~~  181 (225)
                      .+...
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            98765

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9.8e-35  Score=205.46  Aligned_cols=179  Identities=42%  Similarity=0.784  Sum_probs=164.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      -.+-++.+|+|++-+|||+|+++|..+.+..-.+||.+.+++...+.. ++..+++++|||+|+++|+++...++++.-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            356799999999999999999999999999999999999999888775 5788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      +++|||+++.++|+.+..|+.+..-+..  .++.+.||++|+|+...+++..++++++++..|+.|+|+|+++|.||++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999988665543  34557899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccCCC
Q 027292          171 FMTVLTEIFNIVNKKNLTAGEG  192 (225)
Q Consensus       171 f~~l~~~~~~~~~~~~~~~~~~  192 (225)
                      |..+.+.+.....+.+.+...+
T Consensus       165 F~mlaqeIf~~i~qGeik~edg  186 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDG  186 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeec
Confidence            9999999999999877766553

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=216.36  Aligned_cols=170  Identities=50%  Similarity=0.908  Sum_probs=155.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999888888888888888777888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+++++.++++++++||+++.|++++|+++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766689999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027292          175 LTEIFNIVNK  184 (225)
Q Consensus       175 ~~~~~~~~~~  184 (225)
                      ++.+++...+
T Consensus       164 ~~~~~~~~~~  173 (210)
T PLN03108        164 AAKIYKKIQD  173 (210)
T ss_pred             HHHHHHHhhh
Confidence            9999876553

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.5e-34  Score=215.52  Aligned_cols=164  Identities=28%  Similarity=0.525  Sum_probs=146.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .+..+||+++|+.|||||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35678999999999999999999999999888888877555 35667788999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEe
Q 027292           94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLET  159 (225)
Q Consensus        94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  159 (225)
                      |+|||++++.+++.+ ..|+..+.+... +.|++||+||+|+.+            .+.+..++++++++++++ +|+||
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 899999988764 799999999999964            245888999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 027292          160 SALEATN-VENAFMTVLTEIF  179 (225)
Q Consensus       160 Sa~~~~~-v~~~f~~l~~~~~  179 (225)
                      ||++|.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4.5e-34  Score=214.32  Aligned_cols=161  Identities=31%  Similarity=0.582  Sum_probs=144.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus         1 ~~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           1 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            37999999999999999999999999888889887655 44566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292           97 YDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQR----------AVPTEDAKEFAQKEGL-FFLETSALEA  164 (225)
Q Consensus        97 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (225)
                      ||++++++++.+ ..|+..+..... +.|++||+||+|+.+.+          .+..++++.+++..++ .|+|+||++|
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            999999999998 689999987654 79999999999996532          4778889999999998 5999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEIF  179 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~  179 (225)
                      .||+++|+.+++.++
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=7.1e-34  Score=216.18  Aligned_cols=165  Identities=36%  Similarity=0.588  Sum_probs=146.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988877777766554 4566678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||+++.++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+.++|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999998877643 478999999999997766677777888888889999999999999999999999


Q ss_pred             HHHHHHH
Q 027292          175 LTEIFNI  181 (225)
Q Consensus       175 ~~~~~~~  181 (225)
                      ++.+.+.
T Consensus       163 ~~~l~~~  169 (189)
T PTZ00369        163 VREIRKY  169 (189)
T ss_pred             HHHHHHH
Confidence            9988754

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.8e-33  Score=216.66  Aligned_cols=164  Identities=23%  Similarity=0.472  Sum_probs=143.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|+.|||||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889998876654 46677889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |++++++++.+ ..|...+.... .+.|++||+||+|+.+.            ..+..++...++++.++ .|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999998 56877766554 47999999999999642            13667889999999996 799999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHh
Q 027292          164 ATN-VENAFMTVLTEIFNIVN  183 (225)
Q Consensus       164 ~~~-v~~~f~~l~~~~~~~~~  183 (225)
                      +.+ |+++|+.++..++....
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            985 99999999998776544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.6e-33  Score=208.56  Aligned_cols=163  Identities=42%  Similarity=0.779  Sum_probs=148.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777777788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++.++++.+..|+..+......+.|+++|+||+|+.+.+....++..+++..++++++++||+++.|+.++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766689999999999998766777788888888899999999999999999999999887


Q ss_pred             HHH
Q 027292          178 IFN  180 (225)
Q Consensus       178 ~~~  180 (225)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.9e-33  Score=208.51  Aligned_cols=160  Identities=44%  Similarity=0.765  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      ++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++.++++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++|+++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887766679999999999998777778888999999999999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.1e-33  Score=210.41  Aligned_cols=163  Identities=30%  Similarity=0.501  Sum_probs=146.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999888888876444 34566778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++...+++.++++|+++||++|.|++++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988887754 35799999999999987777888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      +.+.+
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            88776

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.6e-33  Score=207.89  Aligned_cols=163  Identities=51%  Similarity=0.861  Sum_probs=149.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      ++||+|+|++|||||||++++.++.+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888888888888877788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.....+..+++..++..++++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998776567999999999999876777778889999999999999999999999999999998


Q ss_pred             HHH
Q 027292          177 EIF  179 (225)
Q Consensus       177 ~~~  179 (225)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.3e-33  Score=210.74  Aligned_cols=167  Identities=41%  Similarity=0.738  Sum_probs=149.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------CEEEEEEEEeCCCchhhhhhhH
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------HKSVKAQIWDTAGQERYRAVTS   84 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   84 (225)
                      ++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+.          +..+.+.+|||||++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888877776666543          4568899999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      .+++.+|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987764 34789999999999987677788889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~  181 (225)
                      |.|++++|++|++.++++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=212.85  Aligned_cols=201  Identities=37%  Similarity=0.659  Sum_probs=159.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...+..+||+|+|.+|||||||+++|+++.+. .+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            34556899999999999999999999998774 56677777777777777788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           92 GAMLVYDISRRQSFDHIPR-WLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      ++|+|||+++.++++.+.. |...+.... ..+.|+++|+||+|+...+....++...++...++.|+++||+++.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999865 666655443 24689999999999987666777788888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcC
Q 027292          170 AFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR  224 (225)
Q Consensus       170 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  224 (225)
                      +|++|.+.+.+.....+.....           -+.-.+.....++++.+++|||
T Consensus       168 l~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T PLN03118        168 CFEELALKIMEVPSLLEEGSTA-----------VKRNILKQKPEHQPPPNGGCCS  211 (211)
T ss_pred             HHHHHHHHHHhhhhhhhccccc-----------ccccccccccccCCCCcCCCCC
Confidence            9999999997653221111111           0111223444556678888996

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.1e-33  Score=211.40  Aligned_cols=160  Identities=26%  Similarity=0.521  Sum_probs=143.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            79999999999999999999999998888888766553 56677889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |++++++++.+ ..|+..+.+... +.|++||+||+|+.+            .+.+..++++++++.+++ .|+++||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 899999988764 799999999999964            245788899999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q 027292          164 ATN-VENAFMTVLTEIF  179 (225)
Q Consensus       164 ~~~-v~~~f~~l~~~~~  179 (225)
                      |++ |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=4.2e-33  Score=206.63  Aligned_cols=161  Identities=37%  Similarity=0.733  Sum_probs=153.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+|+|+.|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.|..++..++..+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ++++++++.+..|+..+......+.|++|++||.|+.+.+.+..++++.++++++++|+++|++++.++.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988886799999999999988788999999999999999999999999999999999999987


Q ss_pred             H
Q 027292          179 F  179 (225)
Q Consensus       179 ~  179 (225)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            6

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=7.1e-33  Score=206.82  Aligned_cols=166  Identities=51%  Similarity=0.919  Sum_probs=152.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++++||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+|||+|++.+..+...+++.+|++|
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            56799999999999999999999999988888888888888778888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||.|+.+......++.+.++...++.++++||+++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766689999999999998666777888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      .+.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.9e-33  Score=211.84  Aligned_cols=162  Identities=27%  Similarity=0.527  Sum_probs=142.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|+.|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999998888888775543 4456778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEeccC
Q 027292           97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEG-LFFLETSAL  162 (225)
Q Consensus        97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  162 (225)
                      ||++++.+++.+. .|+..+..... +.|++||+||.|+.+..            .+..++++.+++.++ +.|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 68888876544 79999999999996532            356678889999998 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIFN  180 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~  180 (225)
                      +|.||+++|+++++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.8e-33  Score=206.66  Aligned_cols=162  Identities=33%  Similarity=0.676  Sum_probs=148.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998889999888888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD-----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++.+.++...+++++++||+++.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999887654     4699999999999976566778888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027292          173 TVLTEIF  179 (225)
Q Consensus       173 ~l~~~~~  179 (225)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=8.7e-33  Score=205.58  Aligned_cols=163  Identities=71%  Similarity=1.143  Sum_probs=149.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||++++.+++.+..|+..+.+....+.|+++|+||+|+...+....++...++...+++++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999888766799999999999987677778888888888899999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.2e-32  Score=205.01  Aligned_cols=163  Identities=53%  Similarity=0.886  Sum_probs=147.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.+||+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35799999999999999999999999988888888877777777878888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAFMT  173 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~f~~  173 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..++ .++++||++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999876666899999999999987777777888899988886 5899999999999999999


Q ss_pred             HHHH
Q 027292          174 VLTE  177 (225)
Q Consensus       174 l~~~  177 (225)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.8e-33  Score=208.23  Aligned_cols=160  Identities=24%  Similarity=0.479  Sum_probs=140.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      ++||+|+|.+|||||||+++|..+.+...+.|+.+..+. ..+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888766554 3566778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEeccC
Q 027292           97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEG-LFFLETSAL  162 (225)
Q Consensus        97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  162 (225)
                      ||++++++++.+. .|+..+..... +.|++||+||+|+.+.            +.+..+++++++++.+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986 59888876653 7999999999998643            4567778888998887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEI  178 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~  178 (225)
                      +|.|++++|+.+++.+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.2e-32  Score=207.72  Aligned_cols=164  Identities=36%  Similarity=0.637  Sum_probs=143.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+|+|++|+|||||+++|+++.+.. .+.++.+..+....+..++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998875 5777777777777788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ----RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.    ..+..+++..++...++.++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887754 37999999999998532    34455667788888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          173 TVLTEIFNIV  182 (225)
Q Consensus       173 ~l~~~~~~~~  182 (225)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.1e-32  Score=208.14  Aligned_cols=163  Identities=27%  Similarity=0.543  Sum_probs=143.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|+.|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999888888778888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE-----QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |++++.+++.+..|+..+........| ++|+||+|+..     ......++.+.+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555667 67899999952     111224567778888899999999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          173 TVLTEIFNI  181 (225)
Q Consensus       173 ~l~~~~~~~  181 (225)
                      ++.+.+++.
T Consensus       160 ~l~~~l~~~  168 (182)
T cd04128         160 IVLAKAFDL  168 (182)
T ss_pred             HHHHHHHhc
Confidence            999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.5e-32  Score=213.29  Aligned_cols=164  Identities=30%  Similarity=0.562  Sum_probs=146.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999999998888999888888777777778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++..+++.+..|+..+..... +.|++||+||+|+.. ..+..+++ .+++..++.|+++||++|.|++++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            99999999999999999999987654 799999999999964 34444545 6777788999999999999999999999


Q ss_pred             HHHHHHH
Q 027292          175 LTEIFNI  181 (225)
Q Consensus       175 ~~~~~~~  181 (225)
                      ++.+++.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988654

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.1e-32  Score=207.66  Aligned_cols=166  Identities=29%  Similarity=0.500  Sum_probs=142.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988887776655543 34444 6788999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027292           97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ----RAVPTEDAKEFAQKEGL-FFLETSALEATNVENA  170 (225)
Q Consensus        97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  170 (225)
                      ||+++..+++.+. .|+..+.... .+.|+++|+||.|+...    +.+..++.++++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5888776554 47999999999999653    24567788899999998 8999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027292          171 FMTVLTEIFNIVNKK  185 (225)
Q Consensus       171 f~~l~~~~~~~~~~~  185 (225)
                      |+.+++.++......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999998775544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3e-32  Score=201.91  Aligned_cols=160  Identities=56%  Similarity=0.914  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++..++..+..|+..+......+.|+++|+||.|+.+.+....+++..+++..++.++++||+++.|+.++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999887776789999999999998767778888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-32  Score=188.14  Aligned_cols=183  Identities=48%  Similarity=0.841  Sum_probs=171.8

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      -...+.+|.+++|+-|+|||.|++.|....|...-+.+.+.++....+.+.+..+.+++|||.|+++|+.....+++.+.
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa   85 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   85 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +.++|||++...++..+..|+...+...+++..+++++||.|+...+.+..+++.+|+.+.|+.|.++|+++|.+|++.|
T Consensus        86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCC
Q 027292          172 MTVLTEIFNIVNKKNLTAGEGQG  194 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~~~~~  194 (225)
                      -...+.+++..++.-.+.-...+
T Consensus       166 le~akkiyqniqdgsldlnaaes  188 (215)
T KOG0097|consen  166 LETAKKIYQNIQDGSLDLNAAES  188 (215)
T ss_pred             HHHHHHHHHhhhcCcccccchhc
Confidence            99999999998877766554443

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.8e-32  Score=203.25  Aligned_cols=160  Identities=32%  Similarity=0.556  Sum_probs=141.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.|..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765 444556677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....++...+++.++++++++||+++.|+.++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998877643 57999999999999766666777778888888899999999999999999999987


Q ss_pred             HH
Q 027292          177 EI  178 (225)
Q Consensus       177 ~~  178 (225)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            64

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=9.2e-32  Score=201.17  Aligned_cols=163  Identities=34%  Similarity=0.648  Sum_probs=144.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999998888887778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+...  ...+++..++++++++++++||++|.|+.++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999886554 34578999999999965432  345667788888899999999999999999999999


Q ss_pred             HHHHHH
Q 027292          176 TEIFNI  181 (225)
Q Consensus       176 ~~~~~~  181 (225)
                      +.+.+.
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            988664

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=8e-32  Score=199.67  Aligned_cols=159  Identities=35%  Similarity=0.667  Sum_probs=143.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ--HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +||+|+|.+|+|||||++++.++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888776666666  678899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||++++++++.+..|+..+..... +.|+++|+||+|+.....+..+++..+++..+++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999876554 799999999999987667777888899999999999999999999999999987


Q ss_pred             HH
Q 027292          176 TE  177 (225)
Q Consensus       176 ~~  177 (225)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=4.8e-32  Score=201.41  Aligned_cols=161  Identities=30%  Similarity=0.539  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6999999999999999999999888777777766544 355667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |+++..+++.+..|+..+.... ..+.|+++|+||+|+.+......++...+++.++++++++||+++.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999999887654 357999999999999876666667778888888999999999999999999999987


Q ss_pred             HHH
Q 027292          177 EIF  179 (225)
Q Consensus       177 ~~~  179 (225)
                      .+.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.2e-31  Score=198.91  Aligned_cols=163  Identities=59%  Similarity=0.967  Sum_probs=149.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++.+++.+..|+..+......+.|+++|+||+|+...+....+.+++++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776689999999999998766677788888999999999999999999999999999988


Q ss_pred             HHH
Q 027292          178 IFN  180 (225)
Q Consensus       178 ~~~  180 (225)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.3e-31  Score=200.15  Aligned_cols=163  Identities=39%  Similarity=0.688  Sum_probs=145.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      +...+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999998888888878777777777888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE  168 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  168 (225)
                      |+|||+++.++++.+..|+..+.....    .+.|+++|+||+|+.. +....+++++++++.+. +++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999988876542    4689999999999973 56677888999988884 79999999999999


Q ss_pred             HHHHHHHHH
Q 027292          169 NAFMTVLTE  177 (225)
Q Consensus       169 ~~f~~l~~~  177 (225)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9e-32  Score=200.50  Aligned_cols=161  Identities=32%  Similarity=0.615  Sum_probs=142.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888888887777777777788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++.++++.+..|+..+..... +.|+++|+||+|+.+ +... .....++...++.++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988776 899999999999974 3333 33456667778899999999999999999999999


Q ss_pred             HHHH
Q 027292          178 IFNI  181 (225)
Q Consensus       178 ~~~~  181 (225)
                      +++.
T Consensus       158 ~~~~  161 (166)
T cd00877         158 LLGN  161 (166)
T ss_pred             HHhc
Confidence            8753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=9.4e-32  Score=199.60  Aligned_cols=161  Identities=29%  Similarity=0.526  Sum_probs=141.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|.+|+|||||+++++.+.+...+.++.+ ++....+..++..+.+.+|||||++.|..++..+++.+|++|+|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999998877777654 45556677788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+...+...+...++..++++++++||+++.|+.++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877643 5799999999999976566666677888888889999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.5e-31  Score=198.38  Aligned_cols=160  Identities=32%  Similarity=0.584  Sum_probs=140.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|.+|||||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988887777666766666777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++.+++.+..|+..+..... +.|+++|+||+|+...   ...+...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999876543 7899999999998532   2344556677778999999999999999999999998


Q ss_pred             HHHH
Q 027292          178 IFNI  181 (225)
Q Consensus       178 ~~~~  181 (225)
                      ++++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.3e-31  Score=203.63  Aligned_cols=161  Identities=29%  Similarity=0.513  Sum_probs=138.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      .||+|+|++|||||||+++|..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998888888665543 44556778899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEeccCC
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEG-LFFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  163 (225)
                      |++++.+++.+. .|+..+..... +.|++||+||+|+.+..            .+..++...++...+ +.|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999885 69988887654 79999999999996533            245566777887777 6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFN  180 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~  180 (225)
                      |.|++++|.++++.++.
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.5e-31  Score=199.13  Aligned_cols=159  Identities=27%  Similarity=0.422  Sum_probs=138.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999998777777765443 344556678889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |+++.++++.+..|+..+.+...   .+.|+++|+||+|+.+.+.+..+++..++..+++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999888776542   479999999999997766677777888888889999999999999999999999


Q ss_pred             HHH
Q 027292          175 LTE  177 (225)
Q Consensus       175 ~~~  177 (225)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.3e-31  Score=201.05  Aligned_cols=158  Identities=28%  Similarity=0.504  Sum_probs=138.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|.+|||||||+.++..+.+...+.++... .....+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            69999999999999999999999998888888653 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |++++++++.+. .|+..+..... +.|++||+||+|+.+.            +.+..+++.++++.++. .|+++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 69888876654 7999999999999642            24677888999999985 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTE  177 (225)
Q Consensus       164 ~~~v~~~f~~l~~~  177 (225)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.9e-31  Score=196.15  Aligned_cols=162  Identities=49%  Similarity=0.865  Sum_probs=148.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|+|||||++++++..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998887888888778788888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      +|++++++++.+..|+..+......+.|+++++||+|+........++...++...++.++++||++|.|+.++|++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877668999999999999865667777888889888999999999999999999999988


Q ss_pred             HH
Q 027292          177 EI  178 (225)
Q Consensus       177 ~~  178 (225)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.1e-31  Score=196.33  Aligned_cols=160  Identities=39%  Similarity=0.772  Sum_probs=146.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++++++.+..|+..+......+.|+++++||+|+.+......++...+++..++.++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665579999999999996656677788888888889999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.2e-31  Score=197.77  Aligned_cols=161  Identities=40%  Similarity=0.623  Sum_probs=140.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999988777777655 333455667778899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |++++++++.+..|+..+.+... .+.|+++|+||+|+...+....+.+..+++..+++++++||+++.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888776543 47899999999999876666777888888889999999999999999999999988


Q ss_pred             HHH
Q 027292          177 EIF  179 (225)
Q Consensus       177 ~~~  179 (225)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.5e-31  Score=197.44  Aligned_cols=162  Identities=43%  Similarity=0.766  Sum_probs=146.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCCEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-AVTSAYYRGAVGAML   95 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~   95 (225)
                      .++|+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+. .++..+++.+|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999888888888888877778888888999999999999886 578889999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC---CCCHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE---ATNVENAF  171 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~f  171 (225)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887765 35799999999999987777788888899999999999999999   88999999


Q ss_pred             HHHHHHH
Q 027292          172 MTVLTEI  178 (225)
Q Consensus       172 ~~l~~~~  178 (225)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=4.3e-31  Score=195.39  Aligned_cols=160  Identities=34%  Similarity=0.594  Sum_probs=139.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999988777777765443 45566777888899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+ +.....++..+++..+++++++||++|.|++++|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988877653 5789999999999976 45566778888888899999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.2e-31  Score=196.10  Aligned_cols=161  Identities=34%  Similarity=0.541  Sum_probs=140.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|.+|+|||||++++++..+...+.++.+.. .......++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            5899999999999999999999988776666665533 344456778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+....++..++++..+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887654 35789999999999987666677778888888889999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.7e-31  Score=201.56  Aligned_cols=156  Identities=29%  Similarity=0.579  Sum_probs=140.3

Q ss_pred             EcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh
Q 027292           23 IGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR  102 (225)
Q Consensus        23 lG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  102 (225)
                      +|..|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999998888889988888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          103 QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       103 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      .+++.+..|+..+.+... +.|++||+||+|+.. +.+..+. ..+++..++.|+++||++|.|+.++|++|++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999988764 899999999999965 3444443 467788889999999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.5e-31  Score=202.44  Aligned_cols=164  Identities=23%  Similarity=0.300  Sum_probs=137.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYRG   89 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~   89 (225)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+|||||.+.+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888877666666677788889999999999654321        12345789


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEAT  165 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  165 (225)
                      +|++|+|||++++.+++.+..|+..+.+..   ..+.|+++|+||+|+...+....++.+.++. .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999999887764   3579999999999997666666666777654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++++|+.+++.++.+
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999888744

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-33  Score=197.03  Aligned_cols=175  Identities=38%  Similarity=0.689  Sum_probs=159.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC---------CEEEEEEEEeCCCchhhhhhhH
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ---------HKSVKAQIWDTAGQERYRAVTS   84 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~   84 (225)
                      .++.++.+.+|++|+|||+|+.++..+.|......+.++++..+.+.++         +..+.+++|||+|+++|+++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999888763         2457799999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      .|++.|-+++++||+++..+|..+..|+..+.-+. ..+.-+|+++||+|+.+.+.++.+++.+++.++++||||+||-+
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            99999999999999999999999999999887665 24666999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcccc
Q 027292          164 ATNVENAFMTVLTEIFNIVNKKNLT  188 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~~~~~~~~  188 (225)
                      |.+|.+..+.++..+++++++-...
T Consensus       166 g~Nv~kave~LldlvM~Rie~~v~~  190 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVMKRIEQCVEK  190 (219)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988854443

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.3e-30  Score=193.66  Aligned_cols=160  Identities=33%  Similarity=0.594  Sum_probs=140.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +||+|+|++|||||||++++..+  .+...+.++.+.++....+... +..+.+.+|||||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777888888877776666654 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.........+.+...++++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887765 479999999999997766667666777778888999999999999999999999


Q ss_pred             HHHH
Q 027292          175 LTEI  178 (225)
Q Consensus       175 ~~~~  178 (225)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=2e-30  Score=191.79  Aligned_cols=161  Identities=40%  Similarity=0.735  Sum_probs=144.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|+|||||+++|+++.+...+.++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777777666776666777778889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++.++++.+..|+..+......+.|+++++||+|+........++..++++..++.++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776689999999999998766677778888888899999999999999999999999886


Q ss_pred             H
Q 027292          178 I  178 (225)
Q Consensus       178 ~  178 (225)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=3.7e-30  Score=192.49  Aligned_cols=165  Identities=42%  Similarity=0.739  Sum_probs=145.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888788777777777778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFM  172 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |++++.+++.+..|...+.....    .+.|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999889887665543    379999999999998655666777888888887 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          173 TVLTEIFNIV  182 (225)
Q Consensus       173 ~l~~~~~~~~  182 (225)
                      ++.+.+++..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=1.2e-30  Score=195.63  Aligned_cols=159  Identities=30%  Similarity=0.549  Sum_probs=137.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI   99 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   99 (225)
                      |+|+|++|||||||+++|.++.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999999887777755443 34566778889999999999999999999999999999999999


Q ss_pred             CChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292          100 SRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALEAT  165 (225)
Q Consensus       100 ~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  165 (225)
                      ++.++++.+. .|+..+..... +.|+++|+||+|+...            ..+..+++..+++..++ .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 69998877654 8999999999999642            23667778889999986 89999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFN  180 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~  180 (225)
                      |++++|+.+++.+++
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1.7e-30  Score=198.06  Aligned_cols=158  Identities=25%  Similarity=0.427  Sum_probs=129.4

Q ss_pred             eeeEEEEcCCCCCHHHHHH-HHhcCc-----CCCCCCCccee-eeEEEE--------EEECCEEEEEEEEeCCCchhhhh
Q 027292           17 VFKVVLIGDSAVGKSQILA-RFARNE-----FSLDSKATIGV-EFQTRT--------LVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      .+||+++|+.|||||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 565443     34556677642 322222        24678899999999999875  3


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE-------------------QRAVP  141 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------~~~~~  141 (225)
                      +...+++.+|++|+|||++++.+++.+. .|+..+..... +.|++||+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999996 69998877654 789999999999964                   36778


Q ss_pred             HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          142 TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      .+++++++++++++|+||||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.3e-30  Score=189.77  Aligned_cols=159  Identities=48%  Similarity=0.855  Sum_probs=143.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887778888888887777777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |+++..+++.+..|+..+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999988775 35799999999999974 455677888889899999999999999999999999887


Q ss_pred             H
Q 027292          177 E  177 (225)
Q Consensus       177 ~  177 (225)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=1e-29  Score=189.70  Aligned_cols=164  Identities=44%  Similarity=0.820  Sum_probs=146.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988887777787777777777788888899999999999999999899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+.+..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.+.+.....++++|+++|.|++++|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998887766679999999999998766667666777777777889999999999999999999


Q ss_pred             HHHH
Q 027292          175 LTEI  178 (225)
Q Consensus       175 ~~~~  178 (225)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=4.1e-30  Score=202.43  Aligned_cols=160  Identities=24%  Similarity=0.445  Sum_probs=138.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|.+|||||||+++|+++.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999887777765 455566777888899999999999999988888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027292           98 DISRRQSFDHIPRWLEELRSH---------ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNV  167 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  167 (225)
                      |+++.++++.+..|+..+.+.         ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999888654         224799999999999976566777777777653 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          168 ENAFMTVLTEI  178 (225)
Q Consensus       168 ~~~f~~l~~~~  178 (225)
                      +++|++|++.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=7.6e-30  Score=198.32  Aligned_cols=167  Identities=26%  Similarity=0.361  Sum_probs=141.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-CCCEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR-GAVGAML   95 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~   95 (225)
                      +||+|+|++|||||||+++|..+.+. ..+.++.+.++....+.+++....+.+|||+|++.  .....++. .+|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 56666655567777778888889999999999982  33445666 9999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++|+++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877642 579999999999998767777777888888889999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 027292          175 LTEIFNIVNKKN  186 (225)
Q Consensus       175 ~~~~~~~~~~~~  186 (225)
                      ++.+.......+
T Consensus       159 ~~~~~~~~~~~~  170 (221)
T cd04148         159 VRQIRLRRDSKE  170 (221)
T ss_pred             HHHHHhhhcccc
Confidence            999876555433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.5e-30  Score=194.41  Aligned_cols=163  Identities=23%  Similarity=0.249  Sum_probs=140.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .+++||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            57899999999999999999999999988 78888888777777777788888999999999999998899999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFM  172 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~  172 (225)
                      |+|||++++.+++.+..|+..+...  .+.|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999988888765332  37999999999999754444344566777778874 79999999999999999


Q ss_pred             HHHHHHH
Q 027292          173 TVLTEIF  179 (225)
Q Consensus       173 ~l~~~~~  179 (225)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=6.4e-30  Score=190.84  Aligned_cols=162  Identities=31%  Similarity=0.545  Sum_probs=142.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+|||||++.|..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999998877777776543 3455667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |++++++++.+..|+..+.+.. ..+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|+++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999998887654 3579999999999998766777777888888888 7899999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      ..++.
T Consensus       161 ~~~~~  165 (168)
T cd04177         161 RQIIC  165 (168)
T ss_pred             HHHhh
Confidence            87754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=3e-30  Score=191.96  Aligned_cols=160  Identities=34%  Similarity=0.526  Sum_probs=136.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~   97 (225)
                      ||+|+|++|+|||||+++++.+.+...+.++....+ ...+..++..+.+.+||+||++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999999888766666654333 45566778889999999999885 3445677889999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC-CCHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA-TNVENAFMTV  174 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~f~~l  174 (225)
                      |+++..+++.+..|+..+....  ..+.|+++|+||+|+...+.+..+++..+++..+++|+++|++++ .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887764  347999999999999766677778888899999999999999999 5999999999


Q ss_pred             HHHHH
Q 027292          175 LTEIF  179 (225)
Q Consensus       175 ~~~~~  179 (225)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=99.97  E-value=1.4e-29  Score=186.19  Aligned_cols=159  Identities=55%  Similarity=0.945  Sum_probs=145.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |++++++++.+..|+..+......+.|+++++||+|+........++..+++...+++++++|++++.|+.++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999998887567999999999999755667788888999888999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=6.6e-30  Score=188.84  Aligned_cols=153  Identities=19%  Similarity=0.339  Sum_probs=129.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|+.|||||||+++++.+.+...+.++ ... +...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887665544 333 345677788889999999999874     34567899999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |++++++++.+..|+..+..... .+.|+++|+||.|+.  ..+.+..+++++++++. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987764 578999999999985  34677788888888876 488999999999999999999


Q ss_pred             HHHH
Q 027292          174 VLTE  177 (225)
Q Consensus       174 l~~~  177 (225)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=9.8e-30  Score=190.74  Aligned_cols=157  Identities=30%  Similarity=0.551  Sum_probs=136.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|++|+|||||++++.++.+...+.++. .+.....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888777764 4455556677788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |++++.+++.+ ..|+..+.... .+.|+++|+||+|+..            .+.+..+++..+++..+. .|+++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999997 46988887643 3799999999999863            346677788899999887 799999999


Q ss_pred             CCCHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLT  176 (225)
Q Consensus       164 ~~~v~~~f~~l~~  176 (225)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.3e-29  Score=190.14  Aligned_cols=159  Identities=26%  Similarity=0.484  Sum_probs=136.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.|..++..++..+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777766654 333445667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |+.++.+++.+. .|+..+... ..+.|+++|+||+|+.+.            ..+..+++..+++..++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 688888765 458999999999998542            24667778888888886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEI  178 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~  178 (225)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.8e-31  Score=183.02  Aligned_cols=161  Identities=42%  Similarity=0.746  Sum_probs=149.8

Q ss_pred             EEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292           21 VLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI   99 (225)
Q Consensus        21 ~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   99 (225)
                      +++|++++|||.|+-++..+-|.. ....+.++++..+.+..++..+.+++|||+|+++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            479999999999998887776643 4467889999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          100 SRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      .+..+|+..+.|+.+++++....+.+.+++||+|+..++.+..++.++++..+++||+++||++|.+|+..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999999888889999999999888888999999999999999999999999999999999998887


Q ss_pred             HH
Q 027292          180 NI  181 (225)
Q Consensus       180 ~~  181 (225)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            76

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=8.3e-29  Score=183.58  Aligned_cols=162  Identities=36%  Similarity=0.586  Sum_probs=140.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|++|+|||||++++....+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877777665443 3345567778899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |+.++.+++.+..|+..+..... .+.|+++|+||+|+.+...........++..++++++++|++++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999988877643 57999999999999764556667778888889999999999999999999999988


Q ss_pred             HHHH
Q 027292          177 EIFN  180 (225)
Q Consensus       177 ~~~~  180 (225)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=191.84  Aligned_cols=179  Identities=30%  Similarity=0.544  Sum_probs=168.8

Q ss_pred             CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292            6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA   85 (225)
Q Consensus         6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   85 (225)
                      ++.+.++..+..+|++|+|..++||||+|++++.+-|...+..+.+.++....+.+..+++.+.+|||+|+++|+.+...
T Consensus         9 ~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA   88 (246)
T KOG4252|consen    9 GMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA   88 (246)
T ss_pred             cCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH
Confidence            45666777889999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      +++++.+.++||+.++..+|+....|++.+....+ .+|.++|-||+|+.++..+...+++.+++.++..++.+|+++..
T Consensus        89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~  167 (246)
T KOG4252|consen   89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF  167 (246)
T ss_pred             HhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999987776 89999999999999988999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhc
Q 027292          166 NVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~~~~  185 (225)
                      ||..+|.+|+..+.+.+.+.
T Consensus       168 NV~~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  168 NVMHVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988873

>cd00876 Ras Ras family

Probab=99.97  E-value=9e-29  Score=182.57  Aligned_cols=158  Identities=37%  Similarity=0.610  Sum_probs=139.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+|+|++|||||||+++++...+...+.++.. +.....+...+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999887777777655 4555556667778899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      +++.++++.+..|+..+..... .+.|+++|+||+|+........+.+..++..++++++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988887765 589999999999998766777788888988888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.7e-28  Score=186.34  Aligned_cols=162  Identities=30%  Similarity=0.551  Sum_probs=135.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      .||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888766666644333 335556777888999999999988877777889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE----------QRAVPTEDAKEFAQKEGL-FFLETSALEAT  165 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  165 (225)
                      |+++.++++.+. .|+..+..... +.|+++|+||+|+..          .+.+..++...+++..++ .||++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 69998876654 699999999999853          234556778888999985 79999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++++|+++.+.++..
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999888655

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.3e-28  Score=183.41  Aligned_cols=159  Identities=30%  Similarity=0.532  Sum_probs=133.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      .||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999988777777654443 45567778889999999999999988888899999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      |+++.++++.+. .|+..+..... +.|+++|+||+|+.+.            ..+...+.++++...+. .++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998884 68888776543 7999999999998542            22345667778877775 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEI  178 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~  178 (225)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=186.88  Aligned_cols=167  Identities=35%  Similarity=0.515  Sum_probs=153.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+++|.+|+|||+|..+|..+.|...|.|+.. +.+...+.+++..+.+.|+||+|+++|..+...++...|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999976 6667778888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      ||++++..||+.+..++..+.+... ..+|+++|+||+|+...+.+..++.+.++..++++|+|+||+.+.+|+++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999855443 568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027292          175 LTEIFNIVN  183 (225)
Q Consensus       175 ~~~~~~~~~  183 (225)
                      ++.+...+.
T Consensus       161 ~r~~~~~~~  169 (196)
T KOG0395|consen  161 VREIRLPRE  169 (196)
T ss_pred             HHHHHhhhc
Confidence            999887443

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2.4e-28  Score=187.08  Aligned_cols=160  Identities=28%  Similarity=0.442  Sum_probs=134.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+|+|++|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||+||+..|..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988777666653 4455566677778899999999999999988999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQ-KEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... .+++.++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654 5799999999999965 34444444444433 4567899999999999999999999


Q ss_pred             HHHH
Q 027292          176 TEIF  179 (225)
Q Consensus       176 ~~~~  179 (225)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=3.5e-28  Score=183.93  Aligned_cols=165  Identities=19%  Similarity=0.364  Sum_probs=131.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      .++|+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877543 566555555544443 3467899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--H----cCCeEEEeccCCCCCHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ--K----EGLFFLETSALEATNVE  168 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~  168 (225)
                      |+|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++...+..  .    .+++++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999988888888776543 34799999999999864  234444444432  1    12468999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027292          169 NAFMTVLTEIFNIVNK  184 (225)
Q Consensus       169 ~~f~~l~~~~~~~~~~  184 (225)
                      ++|++|.+.+.+.+..
T Consensus       160 ~l~~~l~~~l~~~~~~  175 (183)
T cd04152         160 EGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999766543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=6.9e-28  Score=181.73  Aligned_cols=163  Identities=35%  Similarity=0.551  Sum_probs=140.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      .||+|+|.+|+|||||++++.+..+...+.++....+ ...+...+..+.+.+|||||++.+...+..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888766666654333 345566777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |.++..+++.+..|+..+.+.. ..+.|+++|+||+|+...+....++...+++.++.+++++||+++.|+.++|+++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999988877654 357899999999999765666666777788888899999999999999999999998


Q ss_pred             HHHHH
Q 027292          177 EIFNI  181 (225)
Q Consensus       177 ~~~~~  181 (225)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            88655

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=1.4e-28  Score=183.54  Aligned_cols=154  Identities=21%  Similarity=0.409  Sum_probs=123.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+++|++|||||||+++|..+.+. .+.++.+.+..  .+.  ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999887764 34566555443  222  356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----EGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  169 (225)
                      |||++++.+++.+..|+..+.... ..+.|++||+||+|+.+  ....+++..+...     ..+.++++||++|.|+.+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999998888777665432 34789999999999975  2455666655421     234689999999999999


Q ss_pred             HHHHHHH
Q 027292          170 AFMTVLT  176 (225)
Q Consensus       170 ~f~~l~~  176 (225)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=4.1e-29  Score=185.79  Aligned_cols=152  Identities=18%  Similarity=0.317  Sum_probs=125.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI   99 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   99 (225)
                      |+++|++|||||||+++|.+..+...+.++.+...    ..+++..+.+.+||++|++.+..++..+++.+|++|+|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999888777777766542    23345678899999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEeccCC------CCCHHH
Q 027292          100 SRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT----EDAKEFAQKEGLFFLETSALE------ATNVEN  169 (225)
Q Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~~  169 (225)
                      ++..++.....|+..+.... .+.|+++|+||+|+...+....    ..+..++++.++.++++||++      ++||.+
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999889988876544 4899999999999976443221    123455566678899999888      999999


Q ss_pred             HHHHHHH
Q 027292          170 AFMTVLT  176 (225)
Q Consensus       170 ~f~~l~~  176 (225)
                      +|+.+++
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=5.8e-28  Score=182.32  Aligned_cols=159  Identities=20%  Similarity=0.365  Sum_probs=123.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+++|..+||||||++++..+.+. .+.|+.+.+..  .+  +...+.+.+||+||++.+..++..+++.+|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999987775 45666665443  22  235678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~  168 (225)
                      +|||+++.++++....|+..+.... ..+.|++|++||+|+.+.  ...++..+...-.     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999988877776664332 247999999999999753  3334433332111     1236689999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFN  180 (225)
Q Consensus       169 ~~f~~l~~~~~~  180 (225)
                      ++|+||.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999888765

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=3.6e-28  Score=181.62  Aligned_cols=156  Identities=22%  Similarity=0.392  Sum_probs=126.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+....  .+  +...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987643 5666554443  22  2356789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG------LFFLETSALEATNVENAF  171 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++++.+++.+..|+..+.... ..+.|++||+||+|+.+  ....+++++++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999988876543 24689999999999964  355666666653222      258899999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          172 MTVLTEIFNI  181 (225)
Q Consensus       172 ~~l~~~~~~~  181 (225)
                      +||.+.+...
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998876654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=3.3e-28  Score=180.05  Aligned_cols=152  Identities=20%  Similarity=0.416  Sum_probs=118.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+++|.+|||||||++++..+.+. .+.|+.+....  .+.  ...+.+.+||+||++.+..++..+++.+|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999888775 46666665443  232  24688999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHH----HHcCCeEEEeccCCCCCHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDA-KEFA----QKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      |+++..+++.+..|+..+... ...+.|++|++||+|+.+.  ...+++ ..+.    ...++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877766433 2246899999999999652  223332 2221    1123457899999999999999


Q ss_pred             HHHHH
Q 027292          172 MTVLT  176 (225)
Q Consensus       172 ~~l~~  176 (225)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.7e-27  Score=181.99  Aligned_cols=148  Identities=22%  Similarity=0.394  Sum_probs=126.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-----HKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +||+++|+.|||||||+++++.+.+...+.+|.+.++....+.++     +..+.+.+|||+|++.|..++..+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877777666653     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-------------------DKNIVIILIGNKSDLEEQRAVPTED----AKEFA  149 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~  149 (225)
                      +|+|||+++..+++.+..|+..+....                   ..+.|++||+||+|+.+.+....+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   2468999999999997655555442    44678


Q ss_pred             HHcCCeEEEeccCCCC
Q 027292          150 QKEGLFFLETSALEAT  165 (225)
Q Consensus       150 ~~~~~~~~~~Sa~~~~  165 (225)
                      .+.+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899998888888643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=4e-27  Score=182.54  Aligned_cols=166  Identities=29%  Similarity=0.553  Sum_probs=145.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            45567999999999999999999999988888889998888888777778889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||+++..++..+..|+..+..... +.|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999876654 799999999999865 233333 3456777888999999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          173 TVLTEIFNI  181 (225)
Q Consensus       173 ~l~~~~~~~  181 (225)
                      +|++.+...
T Consensus       162 ~ia~~l~~~  170 (215)
T PTZ00132        162 WLARRLTND  170 (215)
T ss_pred             HHHHHHhhc
Confidence            999988753

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1e-27  Score=178.62  Aligned_cols=160  Identities=28%  Similarity=0.371  Sum_probs=125.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|.++.+...+.++ . ........+.+..+.+.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886554332 2 222233445667789999999999988877888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHH
Q 027292           98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEFAQKEG--LFFLETSALEATNVENAFM  172 (225)
Q Consensus        98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+....  ..+....+...++  ..++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999974 68888876654 8999999999999764432  1233334444443  3699999999999999999


Q ss_pred             HHHHHHHH
Q 027292          173 TVLTEIFN  180 (225)
Q Consensus       173 ~l~~~~~~  180 (225)
                      .+...+++
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.4e-27  Score=179.42  Aligned_cols=156  Identities=22%  Similarity=0.394  Sum_probs=122.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+++|.+|||||||++++..+.+. .+.|+.+.++.  .+..  ..+.+.+|||||++.+..++..+++.+|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4699999999999999999999887764 45666655543  2222  45789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |||++++.+++....|+..+.... ..+.|++||+||+|+.+..  ..+++.....     ...+.++++||++|.|+.+
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999888887765432 2478999999999997532  3333333221     1233477899999999999


Q ss_pred             HHHHHHHHH
Q 027292          170 AFMTVLTEI  178 (225)
Q Consensus       170 ~f~~l~~~~  178 (225)
                      +|+||.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.8e-27  Score=179.82  Aligned_cols=160  Identities=23%  Similarity=0.384  Sum_probs=123.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|++|||||||++++..+.+.. +.+|.+.++.  .+.  ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998877754 5566555443  222  356789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|+++.++++....|+..+... ...+.|++||+||.|+.+.  ...+++.....     ...+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999998887777665432 2246899999999998652  23333322211     1123467999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          170 AFMTVLTEIFNIV  182 (225)
Q Consensus       170 ~f~~l~~~~~~~~  182 (225)
                      +|++|.+.+.+.+
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998887654

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=3.3e-27  Score=176.33  Aligned_cols=157  Identities=29%  Similarity=0.567  Sum_probs=131.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988666666644 334445566788899999999999988888888889999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292           98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQR-----------AVPTEDAKEFAQKEGL-FFLETSALEA  164 (225)
Q Consensus        98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (225)
                      |+++..++... ..|+..+..... +.|+++|+||+|+.+..           .+..++...+...++. .++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            99999888876 568877776554 79999999999996543           2346677788888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027292          165 TNVENAFMTVLT  176 (225)
Q Consensus       165 ~~v~~~f~~l~~  176 (225)
                      .|+.++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.7e-27  Score=178.61  Aligned_cols=157  Identities=22%  Similarity=0.338  Sum_probs=124.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....++|+++|++|||||||+++|.+..+ ..+.++.+.  ....+.++  .+.+.+|||||++.+..++..++..+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            345678999999999999999999998754 344555443  23333343  5788999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATN  166 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  166 (225)
                      +++|||+++..+++....|+..+... ...+.|+++|+||+|+.+..  ..+++..+..     ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999998888888776543 23579999999999997532  4455555442     2456799999999999


Q ss_pred             HHHHHHHHHH
Q 027292          167 VENAFMTVLT  176 (225)
Q Consensus       167 v~~~f~~l~~  176 (225)
                      ++++|+++++
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=1.2e-28  Score=183.37  Aligned_cols=166  Identities=30%  Similarity=0.529  Sum_probs=149.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ...+|++|||+.++|||+|+..+..+.|+..|.||.. +.+...+.+ ++..+.+.+|||+|+++|+.++...++.+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999987 556666777 49999999999999999999998899999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEe
Q 027292           94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLET  159 (225)
Q Consensus        94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  159 (225)
                      +++|++.++++++.+ ..|+.++..++. +.|+|||++|.||.++            ..+..++..+++++.|+ .|+||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999996 779999999885 8999999999999742            35677889999999995 59999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHH
Q 027292          160 SALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      ||+++.|+.++|+..++.++...
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999999998764

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=7.2e-27  Score=172.96  Aligned_cols=152  Identities=20%  Similarity=0.363  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +|+++|++|||||||+++|.+..+ ...+.++.+.....  +  ....+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44556665543322  2  235678999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN  169 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+++..++.....|+..+....   ..+.|+++|+||+|+.+..  ..+++.....     ...+.++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999888888888775542   2479999999999997532  2233322211     1234589999999999999


Q ss_pred             HHHHHHH
Q 027292          170 AFMTVLT  176 (225)
Q Consensus       170 ~f~~l~~  176 (225)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=2.6e-26  Score=172.35  Aligned_cols=154  Identities=23%  Similarity=0.410  Sum_probs=120.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+++|++|+|||||++++..+.+.. +.++.+.++.  .+..  ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999887754 4555554432  2322  35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH----HHcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAK-EFA----QKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|+++.+++.....|+..+.... ..+.|+++++||+|+.+.  ...++.. .+.    +..+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999988888777776665433 246899999999998752  2334332 222    23456799999999999999


Q ss_pred             HHHHHHH
Q 027292          170 AFMTVLT  176 (225)
Q Consensus       170 ~f~~l~~  176 (225)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.4e-25  Score=179.54  Aligned_cols=142  Identities=25%  Similarity=0.506  Sum_probs=122.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-------------EEEEEEEEeCCCchhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-------------KSVKAQIWDTAGQERY   79 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~~   79 (225)
                      +....+||+|+|+.|||||||+++|.++.+...+.++.+.++....+.+++             ..+.+.||||+|++.|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            455679999999999999999999999999888889988888777666542             4688999999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCC---C---CC
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD------------KNIVIILIGNKSDLEEQR---A---VP  141 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~~---~---~~  141 (225)
                      ..++..+++.+|++|+|||+++..+++.+..|+..+.....            .++|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987631            258999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCC
Q 027292          142 TEDAKEFAQKEGL  154 (225)
Q Consensus       142 ~~~~~~~~~~~~~  154 (225)
                      .+++++++++.++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7889999999884

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.8e-26  Score=170.67  Aligned_cols=152  Identities=24%  Similarity=0.436  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      +|+|+|++|||||||+++|.+..+.. ..++.+....  .+.. +..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988754 3455554332  2332 345789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEeccCCCCCHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF------AQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +.+..++.....|+..+.... ..+.|+++|+||+|+...  ...+++...      +...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999988888888887765543 247999999999999642  223333222      11234568999999999999999


Q ss_pred             HHHHH
Q 027292          172 MTVLT  176 (225)
Q Consensus       172 ~~l~~  176 (225)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3e-26  Score=170.62  Aligned_cols=152  Identities=24%  Similarity=0.419  Sum_probs=117.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +|+|+|++|+|||||+++|.+...      ...+.++.+....  .+.+  ....+.+|||||++.+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999976422      2233444444432  3333  35789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEeccCCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EGLFFLETSALEA  164 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  164 (225)
                      +++|+|+.+..++.....|+..+.+.. ..+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888888776543 357999999999998652  334444444332       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 027292          165 TNVENAFMTVLT  176 (225)
Q Consensus       165 ~~v~~~f~~l~~  176 (225)
                      .|++++|+||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.1e-26  Score=173.18  Aligned_cols=151  Identities=20%  Similarity=0.339  Sum_probs=119.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      +|+++|.+|||||||+++|.+. +...+.++.+...  ..+..  ..+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999876 6566677766542  23333  45789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHH------HHHHHHcC--CeEEEeccCCC-----
Q 027292           99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDA------KEFAQKEG--LFFLETSALEA-----  164 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~-----  164 (225)
                      +++..+++.+..|+..+..... .+.|++||+||+|+.+.+.  ..++      ..++.+.+  +.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999988875532 4799999999999976432  2221      22232233  45788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 027292          165 -TNVENAFMTVLT  176 (225)
Q Consensus       165 -~~v~~~f~~l~~  176 (225)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=8e-26  Score=171.91  Aligned_cols=155  Identities=21%  Similarity=0.321  Sum_probs=123.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+++|++|||||||++++.+..+. .+.++.+...  ..+.++  ...+.+||+||++.+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999987764 4445544332  333333  4678999999999999889999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEEE
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----------------EGLFFLE  158 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~  158 (225)
                      |+|+.+..+++....|+..+.+... .+.|+++++||+|+.+  .+..++++.+...                ..+.+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999888888888887765443 5799999999999864  4455666665542                2245899


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTE  177 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~  177 (225)
                      +||+++.|+.++|+||.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=2.3e-25  Score=167.12  Aligned_cols=141  Identities=36%  Similarity=0.687  Sum_probs=127.5

Q ss_pred             CcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 027292           40 NEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA  119 (225)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  119 (225)
                      +.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677888999999988888888999999999999999999999999999999999999999999999999999987766


Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       120 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ..+.|++||+||+|+.+.+.+..+++..++..+++.|+++||++|.|++++|++|++.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999997666778888888888899999999999999999999999988754

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=1e-25  Score=166.36  Aligned_cols=151  Identities=23%  Similarity=0.371  Sum_probs=113.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+|+|++++|||||++++..+.+. .+.++.+.+..  .+.  ...+.+.+|||||++.+..++..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999887764 34455444332  222  345789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ++++.++.....|+..+.+ ....+.|+++|+||+|+.+..  ...++.....     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887776666554433 223479999999999997532  2233322211     1234699999999999999999


Q ss_pred             HHHH
Q 027292          173 TVLT  176 (225)
Q Consensus       173 ~l~~  176 (225)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=5.3e-26  Score=167.83  Aligned_cols=151  Identities=23%  Similarity=0.401  Sum_probs=119.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+++|.+|||||||++++++... ..+.++.+.....  +.+  ....+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999873 3445554444332  333  35789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 027292           99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ++++.++.....|+..+.... ..+.|+++|+||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887766543 3579999999999997533  3333433322     2346799999999999999999


Q ss_pred             HHHH
Q 027292          173 TVLT  176 (225)
Q Consensus       173 ~l~~  176 (225)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=5.2e-25  Score=166.70  Aligned_cols=156  Identities=18%  Similarity=0.256  Sum_probs=120.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..++|+++|.+|||||||++++.++.+.. +.++.+...  ..+..  .++.+.+||+||++.+...+..++..+|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            445899999999999999999999876542 344433322  22223  3578899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEecc
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK------------EGLFFLETSA  161 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  161 (225)
                      +|+|++++.++.....|+..+.+.. ..+.|+++|+||+|+..  ....+++.+....            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999988888888877765432 24789999999999864  3455555543311            1234899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTE  177 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~  177 (225)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=4.3e-25  Score=165.72  Aligned_cols=158  Identities=28%  Similarity=0.460  Sum_probs=125.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+++|..|||||||++++..+.... ..||.+.+..  .+.+  ..+.+.+||.+|+..++..|..++..+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence            4678999999999999999999998765433 4555444433  3444  446789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEeccCCCCC
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ------KEGLFFLETSALEATN  166 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  166 (225)
                      |||+|.++.+.+......+..+.... ..+.|+++++||.|+.+  ....+++.....      ...+.++.+||.+|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            99999999888888877777765543 25799999999999875  345565554432      2234589999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEI  178 (225)
Q Consensus       167 v~~~f~~l~~~~  178 (225)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=9.2e-25  Score=160.53  Aligned_cols=151  Identities=24%  Similarity=0.413  Sum_probs=120.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI   99 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   99 (225)
                      |+++|++|+|||||+++|.+..+...+.++.+.....  +...  .+.+.+||+||++.+..++..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888888877655543  2332  37899999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHH
Q 027292          100 SRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus       100 ~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      ++..++.....|+..+.... ..+.|+++|+||+|+.+..  .........     ....++++++|++++.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99888888877777765432 2478999999999987532  222222211     123357899999999999999999


Q ss_pred             HHH
Q 027292          174 VLT  176 (225)
Q Consensus       174 l~~  176 (225)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=1.1e-24  Score=162.23  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=109.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhhc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---------AVTSAYYR   88 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~   88 (225)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.+.....  .....+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            47999999999999999999998764332222122222222  22346789999999974210         11111123


Q ss_pred             CCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           89 GAVGAMLVYDISRRQS--FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      .+|++|+|+|+++..+  .+....|+..+.... .+.|+++|+||+|+.......  +..++....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            4689999999998654  355567888776554 378999999999997543322  24455555667899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIF  179 (225)
Q Consensus       167 v~~~f~~l~~~~~  179 (225)
                      ++++|+++.+.++
T Consensus       156 i~~l~~~l~~~~~  168 (168)
T cd01897         156 VDEVKNKACELLL  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=1.8e-24  Score=162.87  Aligned_cols=154  Identities=20%  Similarity=0.266  Sum_probs=113.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCC------cceeeeEEEEEE--E---CCEEEEEEEEeCCCchhhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNE-------FSLDSKA------TIGVEFQTRTLV--I---QHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~~~~~   80 (225)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.++......  +   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111111      112333333222  2   5567889999999999999


Q ss_pred             hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---EE
Q 027292           81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF---FL  157 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  157 (225)
                      ..+..++..+|++|+|+|+++..+......|....    ..+.|+++|+||+|+.+..  ......++++.+++.   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876666665564332    2378999999999986422  223345566666654   89


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 027292          158 ETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       158 ~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ++||++|.|++++|+++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=5.4e-24  Score=155.98  Aligned_cols=157  Identities=35%  Similarity=0.514  Sum_probs=128.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999987777777877777776677777678999999999999999998899999999999


Q ss_pred             EeCCCh-hhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           97 YDISRR-QSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        97 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|.... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 6666654 67777766655488999999999997633 33333344444445679999999999999999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.5e-24  Score=161.81  Aligned_cols=157  Identities=17%  Similarity=0.121  Sum_probs=111.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHh---hhcCCC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----RYRAVTSA---YYRGAV   91 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d   91 (225)
                      +|+|+|.+|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||..    .+..+...   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            699999999999999999987654322222222222222222222 2478999999963    22222233   344699


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027292           92 GAMLVYDISRR-QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNV  167 (225)
Q Consensus        92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  167 (225)
                      ++++|+|+++. .+++.+..|.+.+.....  .+.|+++|+||+|+.+... .......+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788889999988877642  3689999999999976433 23444455555 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          168 ENAFMTVLTE  177 (225)
Q Consensus       168 ~~~f~~l~~~  177 (225)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=3.2e-24  Score=164.97  Aligned_cols=157  Identities=19%  Similarity=0.176  Sum_probs=114.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhH
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTS   84 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~   84 (225)
                      .++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+ ...+.+|||||...         +...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            35568999999999999999999999865433333333333333333333 23789999999732         22222 


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      ..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+......     .......+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence            23668999999999999888877778887776665557899999999999653221     1344455677999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTE  177 (225)
Q Consensus       165 ~~v~~~f~~l~~~  177 (225)
                      .|+.++|++|.+.
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=9e-24  Score=172.65  Aligned_cols=164  Identities=14%  Similarity=0.069  Sum_probs=122.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   89 (225)
                      ...|.|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||.-+       ....+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            4789999999999999999999865443333433444444333332 345689999999532       22223345668


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      ++++|+|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+.+......+..+.+....+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988788889999999877643  47899999999999764433334455555666788999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      +++|++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887654

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=1.8e-23  Score=156.54  Aligned_cols=152  Identities=22%  Similarity=0.349  Sum_probs=115.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||++++.+..+. .+.++.+.+..  .+...  +..+.+||++|+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            44799999999999999999999987653 24444443332  33333  467899999999998888889999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEeccCCCC
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--------FFLETSALEAT  165 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~  165 (225)
                      +|+|+.+..++.....|+..+.... ..+.|+++++||+|+.+..  ..++   +....++        .++++||++|.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCCC
Confidence            9999999888887777776654432 3479999999999986532  2222   2222332        37899999999


Q ss_pred             CHHHHHHHHHH
Q 027292          166 NVENAFMTVLT  176 (225)
Q Consensus       166 ~v~~~f~~l~~  176 (225)
                      |++++|+||.+
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=8e-24  Score=156.76  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +.|+|+|.+|||||||+++|.+.   .+...+.++.+.+.....+.... ...+.+|||||++.|......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            46899999999999999999863   23333333434444443444332 468999999999999877777889999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEeccCCCCC
Q 027292           95 LVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQK---EGLFFLETSALEATN  166 (225)
Q Consensus        95 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  166 (225)
                      +|+|+++   .++.+.    +..+... . ..|+++++||+|+.....  ...++..+....   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~----~~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREH----LEILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHH----HHHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   333322    2222221 1 248999999999975321  112233344443   357899999999999


Q ss_pred             HHHHHHHHHH
Q 027292          167 VENAFMTVLT  176 (225)
Q Consensus       167 v~~~f~~l~~  176 (225)
                      ++++|+.+..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=5.6e-23  Score=159.63  Aligned_cols=173  Identities=37%  Similarity=0.566  Sum_probs=141.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|+.|||||||+++|....+...+.++.+..+...........+.+.+|||+|++.++.++..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            39999999999999999999999999999999988888877777666688999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEec
Q 027292           97 YDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKE---GLFFLETS  160 (225)
Q Consensus        97 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  160 (225)
                      +|..+ ....+....|+..+......+.|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 4455556889999988876679999999999997643            22222222222222   33389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhhccccc
Q 027292          161 AL--EATNVENAFMTVLTEIFNIVNKKNLTA  189 (225)
Q Consensus       161 a~--~~~~v~~~f~~l~~~~~~~~~~~~~~~  189 (225)
                      ++  .+.++.++|..+++.+.+.........
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  195 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKLVLKN  195 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhhhhhh
Confidence            99  999999999999999987765554433

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.92  E-value=4.5e-23  Score=146.44  Aligned_cols=161  Identities=22%  Similarity=0.367  Sum_probs=128.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ++..++|+++|..|+||||++++|.+.. .....|+.+  +...+..  ...+.+++||..|+...++.|..|+..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            5569999999999999999999998876 333445534  4444444  4678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEeccCCCCC
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTED------AKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      |+|+|.++...++.....+..+.. ....+.|++|++||.|+..  ....++      ..++++...++++.||+.+|++
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            999999998888877665555433 2235789999999999974  233333      3445566788999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFNI  181 (225)
Q Consensus       167 v~~~f~~l~~~~~~~  181 (225)
                      +.+.++|+.+.+.++
T Consensus       166 l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=6.5e-24  Score=154.00  Aligned_cols=134  Identities=25%  Similarity=0.265  Sum_probs=100.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-----hhhhhhHhhhcCCCEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-----RYRAVTSAYYRGAVGA   93 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~   93 (225)
                      ||+++|++|||||||+++|.+..+  .+.++.+.++       .     -.+|||||..     .+..+.. .++.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            899999999999999999998764  2333322221       1     1689999972     3444433 57899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAFM  172 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~f~  172 (225)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++..++++..+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999888654 3444322      249999999999975 33455667777777776 699999999999999999


Q ss_pred             HHH
Q 027292          173 TVL  175 (225)
Q Consensus       173 ~l~  175 (225)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=5.4e-24  Score=163.29  Aligned_cols=157  Identities=22%  Similarity=0.258  Sum_probs=108.4

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC-----------chhh
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG-----------QERY   79 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~   79 (225)
                      .+.+...++|+++|.+|+|||||+++|.+..+.....++  ++.....+...    .+.+|||||           .+.+
T Consensus         3 ~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~   76 (201)
T PRK04213          3 ETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKI   76 (201)
T ss_pred             cccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHH
Confidence            344556789999999999999999999988765555444  34433333332    589999999           5667


Q ss_pred             hhhhHhhhc----CCCEEEEEEeCCChhhH-Hh---------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292           80 RAVTSAYYR----GAVGAMLVYDISRRQSF-DH---------IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA  145 (225)
Q Consensus        80 ~~~~~~~~~----~~d~~i~v~d~~~~~s~-~~---------~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (225)
                      ...+..++.    .++++++|+|....... +.         -..++..+.   ..+.|+++|+||+|+.+..   .+..
T Consensus        77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~  150 (201)
T PRK04213         77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVL  150 (201)
T ss_pred             HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHH
Confidence            666666553    45788889987643211 00         011122222   2379999999999996532   3445


Q ss_pred             HHHHHHcCC---------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          146 KEFAQKEGL---------FFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       146 ~~~~~~~~~---------~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      .++...+++         +++++||++| |++++|++|.+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            566666664         4799999999 999999999887643

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=1.5e-22  Score=146.97  Aligned_cols=153  Identities=45%  Similarity=0.779  Sum_probs=122.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC
Q 027292           22 LIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        22 vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 44455554 6666666666677899999999999988888888999999999999999


Q ss_pred             ChhhHHhHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292          101 RRQSFDHIPRWL-EELRSHADKNIVIILIGNKSDLEEQRAVPTED-AKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       101 ~~~s~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      +..+...+..|+ .........+.|+++++||+|+.......... ..........+++++|+..+.|+.++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988887773 33333444689999999999997643332222 3445556678899999999999999999886

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.2e-23  Score=152.70  Aligned_cols=157  Identities=16%  Similarity=0.155  Sum_probs=109.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      .|+|+|.+|+|||||+++|....+...+.+..+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999987766544443443333333332 24678999999999999988888999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH----Hc--CCeEEEeccCCCCCHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFAQ----KE--GLFFLETSALEATNVENA  170 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~----~~--~~~~~~~Sa~~~~~v~~~  170 (225)
                      |+++....+... .+..+..   .+.|+++|+||+|+.+..... .+....+..    .+  .++++++|++++.|+.++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743222111 1222222   378999999999987422111 111111111    11  356999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          171 FMTVLTEIF  179 (225)
Q Consensus       171 f~~l~~~~~  179 (225)
                      |++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=7.6e-23  Score=150.67  Aligned_cols=147  Identities=16%  Similarity=0.172  Sum_probs=110.2

Q ss_pred             EEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhhc--CCCEE
Q 027292           22 LIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYYR--GAVGA   93 (225)
Q Consensus        22 vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~   93 (225)
                      |+|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||++.+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998865555555555555555555543  5789999999876653      3455554  99999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|+|+.+.+..   ..|+..+..   .+.|+++|+||+|+.+..... .....+...++++++++|+.++.|+.++|++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999875432   234444433   378999999999997644333 3345677778899999999999999999999


Q ss_pred             HHHH
Q 027292          174 VLTE  177 (225)
Q Consensus       174 l~~~  177 (225)
                      +.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=4.8e-23  Score=157.22  Aligned_cols=149  Identities=17%  Similarity=0.201  Sum_probs=106.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CcCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFAR--NEFSLDS------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT   83 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   83 (225)
                      -+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+.+..+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322            1223445555555555667889999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCe
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEGLF  155 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~  155 (225)
                      ..+++.+|++++|+|+.+.. ......|+..+..   .+.|+++|+||+|+.+.... ..+++.++..       +.+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2223334444332   37899999999999653221 1233444442       23678


Q ss_pred             EEEeccCCCCCHHHH
Q 027292          156 FLETSALEATNVENA  170 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~  170 (225)
                      ++++||++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=3.5e-23  Score=150.50  Aligned_cols=148  Identities=17%  Similarity=0.247  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--cC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAVTSAYY--RG   89 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~~   89 (225)
                      ++|+++|.|++|||||+|+|++........|..+.+.....+.+.+  ..+.++|+||.-..      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999887777777777776666666655  67889999994221      22233333  68


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      .|++|+|+|+++.+.-..   +...+.+.   +.|+++++||+|......... ...++.+.++++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLY---LTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHH---HHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHH---HHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987543222   23333333   899999999999976444332 37788888999999999999999999


Q ss_pred             HHHHH
Q 027292          170 AFMTV  174 (225)
Q Consensus       170 ~f~~l  174 (225)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=2.6e-22  Score=163.95  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=116.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   89 (225)
                      ...|+|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||...       ....+...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            5789999999999999999999875433333333333333334332 246789999999642       11223334557


Q ss_pred             CCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           90 AVGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        90 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      +|++|+|+|+++.   ++++.+..|.+++..+..  .+.|++||+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999986   678888888888876642  4789999999999975422 233445566667788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      .|++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=2.9e-22  Score=165.02  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=113.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSA   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~   85 (225)
                      +..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+ +..+.+|||+|.         +.|.+.+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            3568999999999999999999999875444433334555555555532 357899999996         2344433 2


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      .+..+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+..     ...... ....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCCC
Confidence            47899999999999998888777777777666554578999999999996421     122111 122458999999999


Q ss_pred             CHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTE  177 (225)
Q Consensus       166 ~v~~~f~~l~~~  177 (225)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.9e-22  Score=146.82  Aligned_cols=161  Identities=20%  Similarity=0.358  Sum_probs=131.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+++|-.++||||++++|..++.... .||.+.......+    .++.+.+||..|+++++.+|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            45689999999999999999999998887655 7787766665444    378899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFFLETSALEATNV  167 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v  167 (225)
                      |||+|.++.+-+......+..+..... .+.|+++.+||.|+++  ..+..++.......     ...+-.++|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999988888776666655543 6899999999999986  34555544443322     234778999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      .+.++|+.+.+..+
T Consensus       167 ~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  167 YEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887653

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=6.7e-22  Score=158.22  Aligned_cols=153  Identities=18%  Similarity=0.141  Sum_probs=104.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhcCC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------RAVTSAYYRGA   90 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~   90 (225)
                      +|+|+|.+|||||||+|+|++......+....++......+.. .....+.+|||||....        ......++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998765433322222222222222 23356899999996432        11234467899


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVEN  169 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  169 (225)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.. ...+....+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999865543  334444433   378999999999996422 122334444444454 699999999999999


Q ss_pred             HHHHHHHHH
Q 027292          170 AFMTVLTEI  178 (225)
Q Consensus       170 ~f~~l~~~~  178 (225)
                      +++++.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999887654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=4.4e-22  Score=140.04  Aligned_cols=114  Identities=34%  Similarity=0.645  Sum_probs=88.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCC--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFS--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      ||+|+|+.|||||||+++|++..+.  .......+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22233334455555566667777799999999999988888889999999999


Q ss_pred             EeCCChhhHHhHHH---HHHHHHhhcCCCCcEEEEEeCCC
Q 027292           97 YDISRRQSFDHIPR---WLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        97 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      ||++++.+++.+..   |+..+..... +.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            99999999988754   4555554433 699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.88  E-value=4.2e-22  Score=149.24  Aligned_cols=155  Identities=21%  Similarity=0.216  Sum_probs=107.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----hhh---hHhhhcCCCEEE
Q 027292           22 LIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----RAV---TSAYYRGAVGAM   94 (225)
Q Consensus        22 vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~~i   94 (225)
                      |+|++|||||||+++|.+........+.++.+.....+.+. ....+.+|||||....    ..+   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999986522222222223322223222 1567899999996321    122   233567899999


Q ss_pred             EEEeCCCh------hhHHhHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292           95 LVYDISRR------QSFDHIPRWLEELRSHAD-------KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        95 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      +|+|+.+.      .+++.+..|...+.....       .+.|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      577777778777765432       37899999999999754332222223344445677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTE  177 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~  177 (225)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=5.2e-22  Score=139.86  Aligned_cols=167  Identities=26%  Similarity=0.516  Sum_probs=144.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ..-.++|.++|++..|||||+-++.++++...+..+.|.++..+++.+.+..+.+.+||..|++++..+.+..-..+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            33469999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----CCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA-----VPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+||++++.++..+..|++..+......+| |+|++|.|+--.-.     .....++..++-.++++|.+|+....+|.
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999998877665667 55799999732111     11223566677788999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      .+|..+...++..
T Consensus       176 KIFK~vlAklFnL  188 (205)
T KOG1673|consen  176 KIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999888877665

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=2e-21  Score=159.74  Aligned_cols=154  Identities=26%  Similarity=0.361  Sum_probs=104.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhh-------Hh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVT-------SA   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~   85 (225)
                      ...++|+++|.+|||||||+|+|.+..+..... +.++.......+..  .+..+.||||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999887653222 11122222223333  345789999999742 22211       22


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSAL  162 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  162 (225)
                      .+..+|++|+|+|..+  ++... ..|+..+...   +.|.++|+||+|+.+.   ....+.+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4679999999999765  33344 3355555433   5677889999999642   2344555555443  569999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEI  178 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~  178 (225)
                      +|.|++++|++|.+.+
T Consensus       200 tg~gv~eL~~~L~~~l  215 (339)
T PRK15494        200 SGKNIDGLLEYITSKA  215 (339)
T ss_pred             CccCHHHHHHHHHHhC
Confidence            9999999999988764

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-21  Score=134.78  Aligned_cols=170  Identities=24%  Similarity=0.351  Sum_probs=138.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-hhhhHhhhcCCC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-RAVTSAYYRGAV   91 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d   91 (225)
                      ....||+|+|..++|||++++.++.+.-.  ....+|+...+....-...+..-.+.|+||.|-... ..+-.+++.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            45689999999999999999999876543  344566544444433334455667999999996655 566778899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++++||+..+++||+.+..+...+..... ..+|+++.+||.|+.+.+++..+.++.|++.-+++++++++++...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999988776666766554 57999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027292          171 FMTVLTEIFNIVNK  184 (225)
Q Consensus       171 f~~l~~~~~~~~~~  184 (225)
                      |.++...+.....+
T Consensus       167 f~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  167 FTYLASRLHQPQSK  180 (198)
T ss_pred             HHHHHHhccCCccc
Confidence            99998887665443

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=2e-21  Score=142.66  Aligned_cols=146  Identities=22%  Similarity=0.239  Sum_probs=105.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYR   88 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   88 (225)
                      ++|+++|++|+|||||++++.+..... ...+..+.+.....+..  ....+.+|||||...+..        ....++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 22333333333333333  346789999999654422        1234677


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      .+|++++|+|+++..+......|..      ..+.|+++|+||+|+.+....       .......+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998776665544332      337899999999999764332       334456779999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=4.7e-21  Score=162.11  Aligned_cols=156  Identities=19%  Similarity=0.223  Sum_probs=116.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hH
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV--------TS   84 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~   84 (225)
                      ....++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.++  +..+.+|||||...+...        ..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            345689999999999999999999987542 2334444455555555554  456789999997554322        23


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      .+++.+|++++|||++++.+.+..  |+..+..   .+.|+++|+||+|+.+.      ....+++.++.+++++|+++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            567899999999999988776654  6655532   37899999999999643      12345566778899999998 


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027292          165 TNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~~  183 (225)
                      .|+.++|+.+.+.+.+...
T Consensus       346 ~gI~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFYS  364 (442)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            6999999999998887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=3.3e-21  Score=145.92  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=109.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc--------------eeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATI--------------GVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS   84 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   84 (225)
                      +|+|+|.+|+|||||+++|++...........              +.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999876654432211              1122222222233356799999999999888888


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHH-----------
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQK-----------  151 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~-----------  151 (225)
                      .++..+|++++|+|+.+..... ...++..+..   .+.|+++++||+|+.......  .+.+++....           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            8999999999999998755433 2334444433   479999999999997522211  2223333333           


Q ss_pred             ---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          152 ---EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       152 ---~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                         ...+++++||+++.|++++|+++.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               346699999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=1.8e-21  Score=148.24  Aligned_cols=158  Identities=13%  Similarity=0.107  Sum_probs=102.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC----cCC---CCCCCcceeeeEEEEEEEC------------CEEEEEEEEeCCCchh
Q 027292           18 FKVVLIGDSAVGKSQILARFARN----EFS---LDSKATIGVEFQTRTLVIQ------------HKSVKAQIWDTAGQER   78 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~   78 (225)
                      +||+++|++++|||||+++|+..    .+.   .+..+..+.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111   1112222233322222222            3367899999999876


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEFA-Q-----  150 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~-~-----  150 (225)
                      +........+.+|++++|+|+.+.........|.  +...  .+.|+++++||+|+......  ..+++++.. .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6544445567889999999998754333322222  1121  25799999999998642211  122222211 1     


Q ss_pred             -HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          151 -KEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       151 -~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                       ..+++++++||+++.|++++++++.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13567999999999999999999987763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=7.4e-21  Score=166.22  Aligned_cols=156  Identities=19%  Similarity=0.256  Sum_probs=116.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCC------CcceeeeEEEEEEE-----CCEEEEEEEEeCCCchh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNE-------FSLDSK------ATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQER   78 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~   78 (225)
                      .-||+++|+.++|||||+++|+...       +...+.      ...++++....+..     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998742       111111      12244444433322     45668999999999999


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF---  155 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  155 (225)
                      |...+..++..+|++|+|+|+++..+.+....|+..+.    .+.|+++|+||+|+.+..  ......++...+++.   
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666654432    368999999999986422  223334555556653   


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 027292          156 FLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ++++||++|.|++++|++|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.5e-21  Score=164.45  Aligned_cols=162  Identities=24%  Similarity=0.189  Sum_probs=112.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhhh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAVT   83 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   83 (225)
                      ...++|+|+|.+++|||||+++|++.... ....++++.+.....+..++.  .+.+|||||.          +.|..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            34699999999999999999999988653 333444445444445555444  4679999994          3344333


Q ss_pred             -HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHHcCCeEEEe
Q 027292           84 -SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKE-FAQKEGLFFLET  159 (225)
Q Consensus        84 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~  159 (225)
                       ..+++.+|++|+|+|+++..+...+. ++..+..   .+.|+|+|+||+|+.+....  ...++.. +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             34678999999999999877766553 4444433   47899999999999752210  0111211 122233679999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHH
Q 027292          160 SALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      ||++|.|++++|+.+.+.+....
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999987765443

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=2e-21  Score=142.72  Aligned_cols=146  Identities=16%  Similarity=0.113  Sum_probs=98.9

Q ss_pred             EEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcCCC
Q 027292           21 VLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYRGAV   91 (225)
Q Consensus        21 ~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   91 (225)
                      +++|.+|+|||||+++|++..... ...+..+.+........  .+..+.+|||||...+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999865321 12222222333333333  346789999999877443        3345678899


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENA  170 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  170 (225)
                      ++++|+|..+..+.... .+...+..   .+.|+++|+||+|+.+....     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875433321 12222322   26899999999999753221     233334565 6899999999999999


Q ss_pred             HHHHHHH
Q 027292          171 FMTVLTE  177 (225)
Q Consensus       171 f~~l~~~  177 (225)
                      |+++++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=8e-21  Score=165.32  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+++|+.++|||||+++|.+..+...+.+..+.+.....+..++. ..+.||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            446689999999999999999999988776655554444444434433222 2789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cC--CeEEEeccCCC
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EG--LFFLETSALEA  164 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~  164 (225)
                      |+|+|+++....+...    .+......+.|+++++||+|+.+.   ..+.+......       ++  .+++++||++|
T Consensus       163 ILVVda~dgv~~qT~e----~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       163 VLVVAADDGVMPQTIE----AISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEECCCCCCHhHHH----HHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            9999998743222221    122222347999999999998642   23333333322       22  46999999999


Q ss_pred             CCHHHHHHHHHH
Q 027292          165 TNVENAFMTVLT  176 (225)
Q Consensus       165 ~~v~~~f~~l~~  176 (225)
                      .|++++|+++..
T Consensus       236 eGI~eLl~~I~~  247 (587)
T TIGR00487       236 DGIDELLDMILL  247 (587)
T ss_pred             CChHHHHHhhhh
Confidence            999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.87  E-value=3.7e-21  Score=141.99  Aligned_cols=140  Identities=16%  Similarity=0.233  Sum_probs=99.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc-----hhhhhhhHhhhcCCCEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ-----ERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~~~~~~~~~~~d~~   93 (225)
                      +|+++|.+|+|||||+++|.+... . ...+.+.       .+...    .+|||||.     +.+..+. ..+..+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-CccceEE-------EECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence            799999999999999999876431 1 1112111       12121    26999996     2233322 347899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEeccCCCCCHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--FFLETSALEATNVENAF  171 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|+++..++  +..|+..+    ..+.|+++++||+|+.+   ...+.+.+++...++  +++++||+++.|++++|
T Consensus        69 l~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            999999987654  23444433    13678999999999865   234566777777775  79999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          172 MTVLTEIFNI  181 (225)
Q Consensus       172 ~~l~~~~~~~  181 (225)
                      +++.+.+.+.
T Consensus       140 ~~l~~~~~~~  149 (158)
T PRK15467        140 DYLASLTKQE  149 (158)
T ss_pred             HHHHHhchhh
Confidence            9988776543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=2.1e-20  Score=156.57  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhH---hhhcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVTS---AYYRGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~   90 (225)
                      ..|+|+|.++||||||+++|.+........+.++.......+.+. ....+.+||+||...    ...+..   ..+..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            489999999999999999999876443333333333333233322 245789999999532    122223   335569


Q ss_pred             CEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           91 VGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        91 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      +++|+|+|+++.   ++++.+..|..++..+..  .+.|++||+||+|+.+    ..+....+.+.++.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   677777888888877643  4789999999999843    2344566666677789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++++++++.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998877654

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=8.9e-21  Score=159.63  Aligned_cols=159  Identities=18%  Similarity=0.137  Sum_probs=112.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--hhhh------Hhhhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--RAVT------SAYYR   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------~~~~~   88 (225)
                      .++|+|+|.+|+|||||+|+|.+........+..+.+.....+...+ ...+.+|||+|..+.  ...+      ...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            46899999999999999999998765544444444555444444433 226789999997331  1222      23467


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  167 (225)
                      .+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+...   ....  ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            899999999999988777776666655555445799999999999964211   1111  1123445 588999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      +++++++.+.+...
T Consensus       351 deL~e~I~~~l~~~  364 (426)
T PRK11058        351 PLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999887543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.87  E-value=2e-21  Score=135.70  Aligned_cols=156  Identities=21%  Similarity=0.367  Sum_probs=124.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+.+.++|-.++|||||++.++.+.+.....|+.|.....    +....+.+.+||.+|+..|+++|+.|.+.++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            5789999999999999999999999988888887766554    445778899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      +|+.+++.++..+..+..+.... -.+.|+++.+||.|+.+.  .....+..-.     ....+..|.+|+++..+++.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            99999888777665555544333 368999999999999762  3332222211     112244799999999999999


Q ss_pred             HHHHHHHH
Q 027292          171 FMTVLTEI  178 (225)
Q Consensus       171 f~~l~~~~  178 (225)
                      .+||++.-
T Consensus       174 ~~Wli~hs  181 (186)
T KOG0075|consen  174 LDWLIEHS  181 (186)
T ss_pred             HHHHHHHh
Confidence            99998754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=5.9e-21  Score=146.62  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=100.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEEC---------------------------C------
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQ---------------------------H------   63 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------~------   63 (225)
                      ++|+++|+.|+|||||+..+.+..... ......+.........+.                           .      
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            579999999999999999997542111 111011111111100000                           0      


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--C
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--P  141 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~  141 (225)
                      ....+.||||||++.|...+...+..+|++++|+|+.++.........+..+... . ..|+++|+||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence            1267899999999999888888888999999999998731111111122222222 1 2478999999999752211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          142 TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       142 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+.++++....   +++++++||++|.|++++|+++.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            12233333332   56799999999999999999987643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=7.1e-21  Score=163.25  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=106.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   86 (225)
                      ..++|+|+|.+|||||||+|+|++..... ...+..+.+.....+..  .+..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~--~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW--NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE--CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            45799999999999999999999876432 33333333333333333  344688999999652        34445667


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEAT  165 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  165 (225)
                      ++.+|++|+|+|+++..+... ..|...+..   .+.|+++|+||+|+....   .+....+  ..++ .++++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            889999999999998655432 334444433   379999999999986421   1222222  2333 35799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFN  180 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~  180 (225)
                      |++++|+++++.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988744

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.86  E-value=7.4e-21  Score=161.72  Aligned_cols=149  Identities=21%  Similarity=0.214  Sum_probs=109.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV--------TSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~   86 (225)
                      ..++|+++|.+|+|||||+|+|++.... ....+.++.++....+..+  +..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999987643 2333444444444445444  456899999997654322        2336


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      +..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999998877665544433      3378999999999997532211        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFN  180 (225)
Q Consensus       167 v~~~f~~l~~~~~~  180 (225)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.2e-20  Score=160.59  Aligned_cols=161  Identities=22%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV----------   82 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------   82 (225)
                      ....++|+++|.+++|||||+++|++..... ...+.++.+.....+..+  +..+.+|||||..++...          
T Consensus       169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~e~~~~~  246 (429)
T TIGR03594       169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--GKKYLLIDTAGIRRKGKVTEGVEKYSVL  246 (429)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--CcEEEEEECCCccccccchhhHHHHHHH
Confidence            3456999999999999999999999875432 223333333333333333  347889999996443211          


Q ss_pred             -hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeE
Q 027292           83 -TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFAQK----EGLFF  156 (225)
Q Consensus        83 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~  156 (225)
                       ....++.+|++|+|+|+.+..+.... .++..+..   .+.|+++|+||+|+.+ .....++.. .+...    ..+++
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence             13467899999999999987665543 23333332   3789999999999973 111122222 22222    24679


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +++||++|.|+.++|+++.+.+...
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999876544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.3e-20  Score=158.34  Aligned_cols=164  Identities=15%  Similarity=0.089  Sum_probs=114.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhh---hhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRA---VTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~---~~~~~~~~   89 (225)
                      ...|+|+|.++||||||+++|.+........+.++.......+.+  ....+.+|||||...    ...   .....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~--~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA--GDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE--CCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            578999999999999999999987554433343333333333433  335799999999421    111   12334678


Q ss_pred             CCEEEEEEeCCCh----hhHHhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292           90 AVGAMLVYDISRR----QSFDHIPRWLEELRSHA-----------DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL  154 (225)
Q Consensus        90 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  154 (225)
                      +|++|+|+|+++.    +.++.+..|..++..+.           ..+.|++||+||+|+.+... ..+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCC
Confidence            9999999999853    35555666666665443           13689999999999975322 12233333445578


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          155 FFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       155 ~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      +++++||+++.|+++++++|.+.+...+.
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            89999999999999999999998876543

>cd04163 Era Era subfamily

Probab=99.86  E-value=3.8e-20  Score=136.85  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=104.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AVTSAYYR   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~   88 (225)
                      ..+|+++|.+|+|||||++++.+................ ...........+.+|||||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999987654333222112211 122233345788999999964322        23344678


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  167 (225)
                      .+|++++|+|+.+..+. ....+...+...   +.|+++|+||+|+........+....+....+ .+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            99999999999976221 122333334332   68999999999997433323333444444443 57999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          168 ENAFMTVLTE  177 (225)
Q Consensus       168 ~~~f~~l~~~  177 (225)
                      +++|++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=2.2e-20  Score=163.11  Aligned_cols=155  Identities=16%  Similarity=0.189  Sum_probs=114.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +.|+++|+.++|||||+++|.+.   .++.++.++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999999863   33444455555665555555544  78999999999999988888999999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEeccCCC
Q 027292           95 LVYDISR---RQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV--PTEDAKEFAQKE----GLFFLETSALEA  164 (225)
Q Consensus        95 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  164 (225)
                      +|+|+++   +++.+.+    ..+..   .+.| +++|+||+|+.+....  ..+++..+....    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999997   3344332    22222   2677 9999999999753321  123445555544    467999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEIFNI  181 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~  181 (225)
                      .|++++++++...+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999887765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=2.3e-20  Score=164.87  Aligned_cols=158  Identities=21%  Similarity=0.213  Sum_probs=113.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceee--eEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVE--FQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ....++|+|+|+.++|||||+++|....+.....+..+.+  .+...+...+....+.||||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4567899999999999999999999877655444333322  22223333345688999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEeccC
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF-------AQKEG--LFFLETSAL  162 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~  162 (225)
                      ++|+|+|+++....+....|    ......+.|+|+++||+|+....   .+.+...       ...++  ++++++||+
T Consensus       321 iaILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             EEEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            99999999874322222222    12223479999999999997522   2222221       22233  679999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEI  178 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~  178 (225)
                      +|.|++++|+++....
T Consensus       394 tG~GIdeLle~I~~l~  409 (742)
T CHL00189        394 QGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCHHHHHHhhhhhh
Confidence            9999999999887753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=4.4e-20  Score=140.91  Aligned_cols=157  Identities=16%  Similarity=0.208  Sum_probs=104.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~   82 (225)
                      ..+..++|+|+|.+|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          +.+..+
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4557799999999999999999999987644444444444333322222   367899999993          344445


Q ss_pred             hHhhhcCC---CEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHcCCe
Q 027292           83 TSAYYRGA---VGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQKEGLF  155 (225)
Q Consensus        83 ~~~~~~~~---d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~  155 (225)
                      ...++..+   +++++|+|..+..+...  +..|+   ..   .+.|+++++||+|+.+.....  .+.+..........
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            55555544   67888899876433222  22222   21   368899999999986532211  12233444434578


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 027292          156 FLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ++++|++++.|++++++.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.85  E-value=2.4e-20  Score=140.59  Aligned_cols=150  Identities=19%  Similarity=0.245  Sum_probs=98.7

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhh
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRA   81 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~   81 (225)
                      .+++..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||.          +.+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3567789999999999999999999998764333333333333333333332   6899999994          23444


Q ss_pred             hhHhhhc---CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--C
Q 027292           82 VTSAYYR---GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG--L  154 (225)
Q Consensus        82 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~  154 (225)
                      +...+++   .+|++++|+|+++..+.... .++..+..   .+.|+++++||+|+.+...  ...+++++.....+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            4445554   35899999999875443333 22333332   3789999999999864211  12333445555543  4


Q ss_pred             eEEEeccCCCCCHH
Q 027292          155 FFLETSALEATNVE  168 (225)
Q Consensus       155 ~~~~~Sa~~~~~v~  168 (225)
                      .+|++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            69999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=4.5e-20  Score=164.31  Aligned_cols=156  Identities=17%  Similarity=0.207  Sum_probs=112.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+.|+|+|+.++|||||+++|....+.....+..+.+.....+..+  +..+.||||||++.|..++...+..+|+
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence            35678999999999999999999998877655444433333333333333  4678999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-------HHHHcC--CeEEEeccCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-------FAQKEG--LFFLETSALE  163 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~  163 (225)
                      +|||||+++....+..    ..+......++|+||++||+|+.+.   ..+.+..       +...++  ++++++||++
T Consensus       364 aILVVdAddGv~~qT~----e~i~~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        364 VVLVVAADDGVMPQTI----EAINHAKAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEEEECCCCCCHhHH----HHHHHHHhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            9999999874222221    2222222347999999999999652   1222211       123333  6799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTE  177 (225)
Q Consensus       164 ~~~v~~~f~~l~~~  177 (225)
                      |.|++++|++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999998753

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=8.8e-20  Score=135.96  Aligned_cols=155  Identities=21%  Similarity=0.209  Sum_probs=102.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----------hh-hhH
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----------RA-VTS   84 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~-~~~   84 (225)
                      .++|+++|.+|+|||||+++|++..... ...+..+.......+..+  +..+.+|||||....          .. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999875432 222222223322333333  345789999996432          11 112


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHc----CCeEEEe
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED-AKEFAQKE----GLFFLET  159 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~  159 (225)
                      ..+..+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+.+......+. ...+.+.+    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999987664432 23333322   368999999999997643222222 22233333    3679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027292          160 SALEATNVENAFMTVLTE  177 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++.|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.9e-21  Score=139.33  Aligned_cols=164  Identities=30%  Similarity=0.551  Sum_probs=144.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++++++|+.|.|||+++++.+.+++...+.++.+.+.....+.-+...+.+..|||.|++.+..+.-.++-+...+|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            57899999999999999999999999999999999999998877766555799999999999999998888888999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      ++||+....++..+.+|...+...+. ++|+++++||.|.... . .....-.+-+..++.||++|++.+-++..-|.|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchHHH
Confidence            99999999999999999999988887 6999999999998652 2 2233444556678889999999999999999999


Q ss_pred             HHHHHHH
Q 027292          175 LTEIFNI  181 (225)
Q Consensus       175 ~~~~~~~  181 (225)
                      .+.+.-.
T Consensus       165 arKl~G~  171 (216)
T KOG0096|consen  165 ARKLTGD  171 (216)
T ss_pred             hhhhcCC
Confidence            9887543

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=6.8e-20  Score=148.40  Aligned_cols=157  Identities=20%  Similarity=0.204  Sum_probs=104.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------RAVTSAYYR   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   88 (225)
                      .-.|+|+|.+|||||||+|+|++...........++......+.. .....+.+|||||....        .......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            456999999999999999999988765444333222222222222 23478999999995332        223344678


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  167 (225)
                      .+|++++|+|+++..+. ....++..+.   ..+.|+++|+||+|+.............+....+ ..++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            99999999999872221 1122223332   2368999999999997422222333444544444 56999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          168 ENAFMTVLTEI  178 (225)
Q Consensus       168 ~~~f~~l~~~~  178 (225)
                      +++++++.+.+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99999988765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=1.2e-19  Score=151.15  Aligned_cols=163  Identities=16%  Similarity=0.087  Sum_probs=114.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   89 (225)
                      ...|.|+|.|+||||||+|+|.+........+.++.......+.. .....+.++||||...       ........+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            348999999999999999999987654443343333333333333 2234689999999532       11112235778


Q ss_pred             CCEEEEEEeCC---ChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292           90 AVGAMLVYDIS---RRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSAL  162 (225)
Q Consensus        90 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  162 (225)
                      +|++++|+|++   +...++.+..|++.+..+..  .+.|+++|+||+|+..... ..+.++++....+  .+++++||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999988   45567777788888776542  3689999999999965322 2233444555544  368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~~  181 (225)
                      ++.++++++++|.+.+.+.
T Consensus       317 tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhC
Confidence            9999999999998877543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.84  E-value=1.8e-19  Score=138.31  Aligned_cols=117  Identities=19%  Similarity=0.328  Sum_probs=87.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC-CEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVY   97 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~   97 (225)
                      +|+++|++|||||+|+++|....+...+.++ ............+....+.+||+||++++...+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998765554332 2222221111123467799999999999998888899998 9999999


Q ss_pred             eCCCh-hhHHhHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027292           98 DISRR-QSFDHIPRWLEELRSH---ADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        98 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~  136 (225)
                      |+.+. .++.....|+..+...   ...+.|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6677766665544322   225899999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=1.5e-20  Score=142.83  Aligned_cols=159  Identities=21%  Similarity=0.256  Sum_probs=106.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC------------------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS------------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      +..+|+++|+.++|||||+.+|+........                  ....+................+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999864321111                  1122222222222223567789999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHH-HHHHHc---
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAK-EFAQKE---  152 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~-~~~~~~---  152 (225)
                      .|.......+..+|++|+|+|+.+...... .+.+..+..   .+.|+++++||+|+...+.. ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            999888888999999999999997533322 222333333   37889999999998721100 011111 232332   


Q ss_pred             ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          153 ---GLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       153 ---~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                         .++++++||.+|.|+.++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25699999999999999999887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=7.5e-20  Score=159.93  Aligned_cols=146  Identities=21%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             cCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh------hHhhh--cCCCEEEE
Q 027292           24 GDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV------TSAYY--RGAVGAML   95 (225)
Q Consensus        24 G~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~   95 (225)
                      |.+|+|||||+|++.+........+..+.+.....+.+++  ..+.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999877666666655555555555544  45789999998776543      33333  37899999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |+|.++.+.   ...+...+   ...+.|+++|+||+|+.+..... .+.+.+.+.++++++++||++|.|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql---~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQL---LELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHH---HhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   12223333   23479999999999997644443 346788888999999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=2.3e-19  Score=152.98  Aligned_cols=146  Identities=22%  Similarity=0.192  Sum_probs=103.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhhc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAYYR   88 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   88 (225)
                      ++|+|+|.+|||||||+++|.+.... ....+..+.+.....+..++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 22233333444444444433  7899999999876        2333455788


Q ss_pred             CCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCC
Q 027292           89 GAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEAT  165 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  165 (225)
                      .+|++|+|+|+.+..+..  .+..|+...      +.|+++|+||+|+.+.    .....++ ..+++. ++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998743322  234444322      7899999999997541    1222233 345664 8999999999


Q ss_pred             CHHHHHHHHHH
Q 027292          166 NVENAFMTVLT  176 (225)
Q Consensus       166 ~v~~~f~~l~~  176 (225)
                      |+.++|+++..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999887

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.1e-19  Score=123.77  Aligned_cols=156  Identities=22%  Similarity=0.447  Sum_probs=122.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+.+|-.++||||++..|.-+.. ....||.|......+    ...+.+.+||..|++..+..|.+|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            378999999999999999999987654 455566565555433    367789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|..+.+.++..+..+..+.+.. ..+.|+++.+||.|+++  ...+.++.....     .....+.++++.+|.++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999998877777655444444333 25789999999999986  345566555432     2234578999999999999


Q ss_pred             HHHHHHHHH
Q 027292          170 AFMTVLTEI  178 (225)
Q Consensus       170 ~f~~l~~~~  178 (225)
                      -|.|+.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.83  E-value=2.4e-19  Score=156.94  Aligned_cols=159  Identities=19%  Similarity=0.254  Sum_probs=114.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc--CCC-----CC------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE--FSL-----DS------KATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQ   76 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~   76 (225)
                      ++.-+|+|+|+.++|||||+.+|+...  +..     ..      ....+++.....+.+     ++..+.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            345689999999999999999998632  110     00      112233333322222     455789999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-  155 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  155 (225)
                      ..|...+..++..+|++|+|+|+++....+....|....    ..+.|+++|+||+|+....  ......++...+++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence            999999999999999999999999865555555554432    2378999999999986422  122234454555654 


Q ss_pred             --EEEeccCCCCCHHHHHHHHHHHHH
Q 027292          156 --FLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       156 --~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                        ++++||++|.|+.+++++|.+.+-
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999987764

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=140.48  Aligned_cols=158  Identities=20%  Similarity=0.182  Sum_probs=110.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAYY   87 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~   87 (225)
                      ..--|+++|.|+||||||+|++++......+....++......+.. ....++.|+||||.-.        ........+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            3456899999999999999999999988777766655555555544 3478999999999322        222334467


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATN  166 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  166 (225)
                      ..+|+++||+|+++.-... ....++.+..   .+.|+++++||+|..............+.....+ .++++||+.|.+
T Consensus        84 ~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            8999999999999733221 1222333433   3689999999999876433222223333333333 499999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEI  178 (225)
Q Consensus       167 v~~~f~~l~~~~  178 (225)
                      ++.+.+.+...+
T Consensus       160 ~~~L~~~i~~~L  171 (298)
T COG1159         160 VDTLLEIIKEYL  171 (298)
T ss_pred             HHHHHHHHHHhC
Confidence            999988776654

>cd00880 Era_like Era (E

Probab=99.83  E-value=1.6e-19  Score=132.29  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=102.2

Q ss_pred             EEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCCEE
Q 027292           22 LIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAYYRGAVGA   93 (225)
Q Consensus        22 vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~~   93 (225)
                      |+|.+|+|||||++++++.... ....+..+.......... .....+.+||+||...+.       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL-GPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe-cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986554 233333222322222222 125689999999966543       2344578899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE---DAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++|+|..+........ |.....   ..+.|+++|+||+|+.........   .........+.+++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876655443 333332   247899999999998753322211   112223334577999999999999999


Q ss_pred             HHHHHHH
Q 027292          171 FMTVLTE  177 (225)
Q Consensus       171 f~~l~~~  177 (225)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=3e-19  Score=151.96  Aligned_cols=149  Identities=19%  Similarity=0.192  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ--------ERYRAVTSAYYRG   89 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~   89 (225)
                      +|+|+|.+|||||||+|+|.+...... ..+..+.+.....+..  .+..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE--CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998764322 2233233333333333  3456999999995        3445556677899


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE  168 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  168 (225)
                      +|++++|+|+.+..+... ..+...+++   .+.|+++|+||+|+.+....    ..+ ...+++ .++++||..|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987433222 122222332   27899999999998753321    122 345666 59999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      ++++++.+.+
T Consensus       150 ~ll~~i~~~l  159 (429)
T TIGR03594       150 DLLDAILELL  159 (429)
T ss_pred             HHHHHHHHhc
Confidence            9999988765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=7.3e-19  Score=157.25  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=114.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------hHhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV----------TSAY   86 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   86 (225)
                      .++|+++|.+|+|||||+|+|.+........+  +++.......+...+..+.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            46899999999999999999998765444443  34555555555667788999999998765421          1223


Q ss_pred             h--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           87 Y--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      +  ..+|++++|+|+++.+..   .+|...+.+.   +.|+++++||+|+.+.+.. ....+++.+.++++++++|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  478999999999875432   2344444443   7999999999999764443 34567888889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=7.5e-19  Score=157.37  Aligned_cols=165  Identities=23%  Similarity=0.178  Sum_probs=110.5

Q ss_pred             CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 027292            6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------   78 (225)
Q Consensus         6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   78 (225)
                      +++...-......+|+|+|.++||||||+|+|++........ ..+.+...........+..+.+|||||.+.       
T Consensus       264 ~~~~~~~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~  342 (712)
T PRK09518        264 VAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDS  342 (712)
T ss_pred             ccCccccccccCcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHH
Confidence            344554555667899999999999999999999875432221 223333333333333456789999999653       


Q ss_pred             -hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eE
Q 027292           79 -YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FF  156 (225)
Q Consensus        79 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  156 (225)
                       +......++..+|++|+|+|+.+..+.. -..|...++.   .+.|+++|+||+|+....    .....+ ...+. ..
T Consensus       343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~  413 (712)
T PRK09518        343 AIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEP  413 (712)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCe
Confidence             3344556788999999999998632211 1244455543   379999999999986421    112222 12333 26


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      +++||++|.|++++|+++++.+..
T Consensus       414 ~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        414 YPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEEECCCCCCchHHHHHHHHhccc
Confidence            799999999999999999987743

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=9.9e-19  Score=149.05  Aligned_cols=160  Identities=22%  Similarity=0.234  Sum_probs=105.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhhh-
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRAV-   82 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-   82 (225)
                      ...++|+|+|.+|+|||||+++|++.... ....+.  ++.......+...+..+.+|||||...          |... 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            45799999999999999999999986532 222333  233332322323445678999999532          2211 


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEE
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----EGLFFLE  158 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~  158 (225)
                      ...++..+|++|+|+|+.+..+.... .++..+.+   .+.|+++|+||+|+.+... ..+....+...    ..+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence            22467899999999999987665443 23333332   3689999999999874211 11111122222    2467999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +||+++.|+.++|+.+.+.....
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988766544

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=8.5e-19  Score=124.82  Aligned_cols=135  Identities=24%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----chhhhhhhHhhhcCCCEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----QERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i   94 (225)
                      ||+|+|+.|+|||||+++|.+.+.  .+..|..+.+..            .++||||    +..|..........+|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988654  444443333221            3589999    3344444555667999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT  173 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~~  173 (225)
                      +|.|++++.+.-. ..    +...  .+.|+|-|+||+|+... ....+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-P~----fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PG----FASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-ch----hhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643221 11    1111  26899999999999842 33566778888888886 899999999999999988


Q ss_pred             HH
Q 027292          174 VL  175 (225)
Q Consensus       174 l~  175 (225)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=2.1e-21  Score=140.80  Aligned_cols=170  Identities=34%  Similarity=0.610  Sum_probs=145.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ..+..++++|+|..|+|||+++.++....+...|..+++.++..+...-+. .-+++++||+.|+++|..+..-+++.++
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            367889999999999999999999999999999999988888877765433 4567899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcCCe-EEEeccCCCC
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVP-TEDAKEFAQKEGLF-FLETSALEAT  165 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~Sa~~~~  165 (225)
                      +.++|||+++.-+++....|.+.+.....    ...|+++..||+|........ ...+..+.+++|+. ++++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999998765442    346789999999997633222 35677888889876 9999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNIV  182 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~  182 (225)
                      ++.++-..+++.++..-
T Consensus       181 ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVND  197 (229)
T ss_pred             ChhHHHHHHHHHHHhhc
Confidence            99999999998887663

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=5.2e-19  Score=150.13  Aligned_cols=157  Identities=18%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   64 (225)
                      ....++|+++|++++|||||+++|+...-...                             .....+++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            45679999999999999999999984321110                             0112344444455555667


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC----
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRA----  139 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----  139 (225)
                      .+.+.+|||||++.|.......+..+|++|+|+|+++....... ..++..+... . ..|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence            78899999999998876666667899999999999863222221 2222222222 2 246899999999975211    


Q ss_pred             CCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292          140 VPTEDAKEFAQKEG-----LFFLETSALEATNVENAFM  172 (225)
Q Consensus       140 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ...+++..+....+     ++++++||++|.|+.+.++
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            11234455555555     4699999999999987553

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=3.2e-18  Score=153.30  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhh-
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAVT-   83 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~-   83 (225)
                      ..++|+|+|.+|||||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||||..          .|..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999998753 233333344444444444443  46699999942          232222 


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHHc----CCeEEE
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQKE----GLFFLE  158 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~  158 (225)
                      ...++.+|++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.+...  .+.... +...+    .+++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            23478999999999999877766554 3333333   3789999999999975211  122222 22221    245799


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +||++|.|++++|+.+.+.+.+.
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998877653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.80  E-value=9.2e-19  Score=152.85  Aligned_cols=156  Identities=15%  Similarity=0.227  Sum_probs=112.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC--cCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292           19 KVVLIGDSAVGKSQILARFARN--EFSLDS------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS   84 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   84 (225)
                      +|+|+|+.++|||||+++|+..  .+....            ....+++.......+.+.++.+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221111            12234555555555566778999999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCeE
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEGLFF  156 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~  156 (225)
                      .++..+|++++|+|+.+.. ..+...|+..+...   +.|+++|+||+|+.+.+.. ..+++..+..       +..+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998632 23345566655543   7899999999998653321 1233333332       235679


Q ss_pred             EEeccCCCC----------CHHHHHHHHHHHH
Q 027292          157 LETSALEAT----------NVENAFMTVLTEI  178 (225)
Q Consensus       157 ~~~Sa~~~~----------~v~~~f~~l~~~~  178 (225)
                      +.+||++|.          ++..+|+.+++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999995          7888888877665

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=1.9e-18  Score=150.32  Aligned_cols=157  Identities=16%  Similarity=0.137  Sum_probs=103.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc----eeeeEEEEEEE------------CCEEEEEEEEeCCCchhhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI----GVEFQTRTLVI------------QHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~l~Dt~G~~~~~   80 (225)
                      ..-|+++|++++|||||+++|.+..+......+.    +..+.......            ......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3569999999999999999999876644332211    11111111100            0011238899999999999


Q ss_pred             hhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC------------CHHH-
Q 027292           81 AVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV------------PTED-  144 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------------~~~~-  144 (225)
                      .++..+++.+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+...+..            .... 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   34443322    2222   37899999999999642110            0000 


Q ss_pred             -----------HHHHHH------------Hc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          145 -----------AKEFAQ------------KE--GLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       145 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                                 ...+..            .+  .++++++||++|+|+++++.++.....+
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                       001111            11  2579999999999999999988765544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=4.5e-19  Score=127.38  Aligned_cols=160  Identities=21%  Similarity=0.356  Sum_probs=120.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC------cCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN------EFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      ..+.|+|+|..++|||||+.++-..      ..+ ..-.++.+....  ++.+  ....+.+||..|++..+++|..++.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v--~~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEV--CNAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceee--ccceeEEEEcCChHHHHHHHHHHHH
Confidence            3578999999999999999887431      111 112233333332  2323  2567899999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEecc
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ------KEGLFFLETSA  161 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa  161 (225)
                      .+|++|++||+++++-++.....++.+.... ..+.|+++.+||.|+.+  ....+++.....      ....++.++||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence            9999999999999988888776666654443 36899999999999975  333444443332      23466999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~~  181 (225)
                      .+|+||++-.+|++..+.++
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988776

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.80  E-value=1.4e-18  Score=147.43  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC---------------------------CCCCcceeeeEEEEEEECCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSL---------------------------DSKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   64 (225)
                      ....++|+++|+.++|||||+.+|+..  ....                           ......+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            456799999999999999999999852  1110                           00111233444444445566


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC---
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAV---  140 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---  140 (225)
                      .+.+.+|||||++.|.......+..+|++|+|+|+++.++..... .+...+..... ..|+++++||+|+.+....   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHHH
Confidence            788999999999998777777788999999999999874321111 11111222222 3579999999999642111   


Q ss_pred             -CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHH
Q 027292          141 -PTEDAKEFAQKEG-----LFFLETSALEATNVENAF  171 (225)
Q Consensus       141 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f  171 (225)
                       ..++++.+++..+     ++++++||++|.|+.+++
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             1234556666655     569999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=3.3e-18  Score=126.77  Aligned_cols=150  Identities=17%  Similarity=0.243  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHhhhc
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAVTSAYYR   88 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~   88 (225)
                      .|+++|.+|+|||||++.+.+..+.....++.+.+.....+..+.   .+.+|||||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996555444444444444443333332   88999999942          23444444444


Q ss_pred             ---CCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHH--HcCCeEEEe
Q 027292           89 ---GAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQ--KEGLFFLET  159 (225)
Q Consensus        89 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~  159 (225)
                         ..+++++++|..+..  ....+..|+...      +.|+++++||+|+.......  ........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999987653  222334444332      58999999999985422111  111222222  234569999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027292          160 SALEATNVENAFMTVLTE  177 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~  177 (225)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=121.00  Aligned_cols=159  Identities=25%  Similarity=0.393  Sum_probs=117.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------CCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS--------LDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      .+-...+|+|.|+.++||||+++++......        ..+..  .++.......+.+ ..+..+++++||||++|.-+
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~-~~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL-DEDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE-cCcceEEEecCCCcHHHHHH
Confidence            3456789999999999999999999875431        11111  1122222222222 23467899999999999999


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEec
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE--GLFFLETS  160 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S  160 (225)
                      |..+.+.++++|+++|.+.+.++ .....+..+... . ..|++|++||.|+.+.  ...+.++++....  ..+.++.+
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~-~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-N-PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-c-CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeee
Confidence            99999999999999999998887 444444444333 2 2999999999999863  4566666665544  78899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTE  177 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~  177 (225)
                      +.++++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988877654

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.1e-18  Score=134.55  Aligned_cols=148  Identities=24%  Similarity=0.212  Sum_probs=95.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------------------CCcceeeeEEEEEEECCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDS-----------------------------KATIGVEFQTRTLVIQHKSVKAQ   69 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   69 (225)
                      ||+|+|++++|||||+++|+...-....                             ....+++.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999763221110                             00122333333344445667889


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC----CHHHH
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV----PTEDA  145 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~  145 (225)
                      +|||||++.|.......+..+|++|+|+|+.+...... ......+... . ..++|+|+||+|+.+....    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999999887666777899999999999986432111 1112222221 1 2457888999998642211    11234


Q ss_pred             HHHHHHcCC---eEEEeccCCCCCHHH
Q 027292          146 KEFAQKEGL---FFLETSALEATNVEN  169 (225)
Q Consensus       146 ~~~~~~~~~---~~~~~Sa~~~~~v~~  169 (225)
                      +.+...++.   +++++||++|.|+.+
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            455555663   489999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=7.9e-18  Score=146.94  Aligned_cols=159  Identities=13%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR--NEFSLD------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      ..-+|+|+|+.++|||||+++|+.  +.+...            ...+.+++.......+.+.++.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457899999999999999999987  332221            123456667766667777889999999999999999


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcC
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEG  153 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~  153 (225)
                      .+..+++.+|++|+|+|+.+..... ...++..+..   .+.|.++++||+|+...+.. ..+++..+..       +..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998743322 2233333333   37889999999998653221 1233333332       234


Q ss_pred             CeEEEeccCCCC----------CHHHHHHHHHHHH
Q 027292          154 LFFLETSALEAT----------NVENAFMTVLTEI  178 (225)
Q Consensus       154 ~~~~~~Sa~~~~----------~v~~~f~~l~~~~  178 (225)
                      ++++.+||.+|.          ++..+|+.+++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            679999999998          4677776655544

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=9.2e-18  Score=127.77  Aligned_cols=148  Identities=19%  Similarity=0.182  Sum_probs=99.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCC------C--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFS------L--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      .++|+++|+.++|||||+++|++....      .        ......+++.......+......+.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            479999999999999999999863100      0        01112334444455556666778899999999988887


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-----
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG-----  153 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----  153 (225)
                      ....+..+|++++|+|+....... ....+..+...   +.| +|+++||+|+......   ..+++..+....+     
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            788889999999999998643222 22233333332   566 7788999998632211   1123444444443     


Q ss_pred             CeEEEeccCCCCCHH
Q 027292          154 LFFLETSALEATNVE  168 (225)
Q Consensus       154 ~~~~~~Sa~~~~~v~  168 (225)
                      ++++++||.+|.+..
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=3.6e-18  Score=140.73  Aligned_cols=148  Identities=19%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhh---------hhhhHhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY---------RAVTSAYY   87 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~   87 (225)
                      ..|+++|.|+||||||+|+|++........ |..+-+...  -.....+..+.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y--~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIY--GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcc--ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            679999999999999999999987665443 333333333  333345566999999995531         22345567


Q ss_pred             cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCC
Q 027292           88 RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEA  164 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  164 (225)
                      ..||++|||+|....-+.+  .+..|+.      ..+.|+++|+||+|-..     .+........+|+. ++.+||..|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence            8999999999998743322  2333332      22799999999999652     23333334455654 999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      .|+.++++.++..+
T Consensus       151 ~Gi~dLld~v~~~l  164 (444)
T COG1160         151 RGIGDLLDAVLELL  164 (444)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999999888876

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.78  E-value=3e-17  Score=128.41  Aligned_cols=151  Identities=23%  Similarity=0.225  Sum_probs=100.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAYYRGAV   91 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d   91 (225)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+  .+..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999987643333333233333333333  34678999999964322       22345788999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHH-----------------------------------------HHhh-----------
Q 027292           92 GAMLVYDISRRQ-SFDHIPRWLEE-----------------------------------------LRSH-----------  118 (225)
Q Consensus        92 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~-----------  118 (225)
                      ++++|+|+++.. ..+.+...+..                                         +.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 33333222211                                         1111           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          119 -----------A--DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       119 -----------~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                                 .  ..-.|+++|+||+|+..     .++...++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  01268999999999853     3444455443  3589999999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.78  E-value=1e-17  Score=147.00  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=104.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      -|.++|+.++|||||+++|.+.   .+..+..+..+++.....+.. ..+..+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-CCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            5889999999999999999863   333344344444443333322 123458999999999998877888999999999


Q ss_pred             EEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC--HHHHHHHHHHcC---CeEEEeccCCCCC
Q 027292           96 VYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP--TEDAKEFAQKEG---LFFLETSALEATN  166 (225)
Q Consensus        96 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~  166 (225)
                      |+|+++.   .+.+.    +..+...   +.| +++|+||+|+.+.....  .+++.++....+   ++++++|+++|.|
T Consensus        81 VVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999873   33322    2222222   455 57899999997532211  233444544444   6799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEI  178 (225)
Q Consensus       167 v~~~f~~l~~~~  178 (225)
                      ++++++.|.+..
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999887654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=4.7e-18  Score=143.23  Aligned_cols=162  Identities=19%  Similarity=0.173  Sum_probs=104.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEE------------------EEECC------EEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRT------------------LVIQH------KSVK   67 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~------------------~~~~~------~~~~   67 (225)
                      ...++|+++|+.++|||||+++|.+....   .+.....+.......                  ...+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45789999999999999999999753211   111111111111000                  00011      1467


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027292           68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDA  145 (225)
Q Consensus        68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~  145 (225)
                      +.+|||||+++|...+......+|++++|+|+++.....+..+.+..+.. .. ..|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IG-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            89999999999988888888899999999999964311222222333322 22 3568999999999753211  12333


Q ss_pred             HHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          146 KEFAQKE---GLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       146 ~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ..+....   +++++++||++|.|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            3443332   57799999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=6e-18  Score=142.55  Aligned_cols=164  Identities=19%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEEEE------------------EC------CE
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRTLV------------------IQ------HK   64 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~------------------~~------~~   64 (225)
                      +...+.++|+++|+.++|||||+.+|.+.-..   .+.....+.........                  .+      ..
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            45667799999999999999999999653111   11111222221110000                  00      01


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--  141 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--  141 (225)
                      ...+.+|||||++.|..........+|++++|+|+.++. ..+.... +..+... . ..|+++|+||+|+.+.....  
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII-G-IKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc-C-CCcEEEEEEeeccccchhHHHH
Confidence            367899999999998877777777889999999999643 1111122 2222221 1 24689999999997532211  


Q ss_pred             HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          142 TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       142 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+++..+....   +.+++++||+++.|+++++++|.+.+
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            23344444332   46799999999999999999987765

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.7e-17  Score=130.09  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      +|+++|+.|+|||||+++|+...-...                .....+.+.......+.+.+..+.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            689999999999999999976321100                0112233344444455566788999999999999888


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      +..+++.+|++++|+|+.+.... ....|+..+...   +.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            88999999999999999975432 334555555443   78999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.77  E-value=1.3e-18  Score=146.06  Aligned_cols=164  Identities=24%  Similarity=0.305  Sum_probs=127.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+++|+.|+||||||-.++..++....++...  ............+...+.|++..+.-+.....-+++||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3569999999999999999999999998777654422  11111333445667899999977766666677899999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHI-PRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTED-AKEFAQKEG-LF-FLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~v~  168 (225)
                      +||+.+++++++.+ ..|+..+++...  .++|+|||+||+|..+....+.+. +..++.++. +. -++|||++..++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999998 679999988873  589999999999997655543333 444555544 22 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFN  180 (225)
Q Consensus       169 ~~f~~l~~~~~~  180 (225)
                      ++|.+..+.++.
T Consensus       165 e~fYyaqKaVih  176 (625)
T KOG1707|consen  165 ELFYYAQKAVIH  176 (625)
T ss_pred             hhhhhhhheeec
Confidence            999988777654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=3.3e-17  Score=143.08  Aligned_cols=158  Identities=17%  Similarity=0.164  Sum_probs=101.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc----ceeeeEEEEEEE--CCEE-----E-----EEEEEeCCCchhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKAT----IGVEFQTRTLVI--QHKS-----V-----KAQIWDTAGQERY   79 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~-----~-----~~~l~Dt~G~~~~   79 (225)
                      +.+.|+++|++++|||||+++|.+..........    .+..+.......  .+..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4557999999999999999999765443222211    111111111000  0111     1     2789999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--C----------HHH
Q 027292           80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--P----------TED  144 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~----------~~~  144 (225)
                      ..++...+..+|++|+|+|+++   +.+++.+.    .+..   .+.|+++++||+|+...+..  .          ...
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9999888999999999999997   44444332    2222   37899999999998532110  0          000


Q ss_pred             -----------HHHHHHH---------------cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          145 -----------AKEFAQK---------------EGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       145 -----------~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                                 +......               ..++++++||.+|.|++++++.+...+.+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence                       0001111               12569999999999999999888755433

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.4e-17  Score=137.70  Aligned_cols=157  Identities=20%  Similarity=0.194  Sum_probs=112.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT--------SA   85 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~   85 (225)
                      ...-++|+++|.|+||||||+|.|++.+.....+-. |++....+..++-.++.+.+.||+|........        ..
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            345689999999999999999999998776555433 355555555555677889999999965543332        23


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      .+..||.+++|+|.+.+.+-...     .+......+.|+++|.||.|+.......  ..   ....+.+++.+|+++++
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~-----~~~~~~~~~~~~i~v~NK~DL~~~~~~~--~~---~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDL-----ALIELLPKKKPIIVVLNKADLVSKIELE--SE---KLANGDAIISISAKTGE  362 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhH-----HHHHhcccCCCEEEEEechhcccccccc--hh---hccCCCceEEEEecCcc
Confidence            57799999999999985222221     1111334579999999999998643311  11   11233468999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++.+.+.|.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999998888777665

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=2.1e-17  Score=136.21  Aligned_cols=163  Identities=23%  Similarity=0.205  Sum_probs=114.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhhh-hH
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRAV-TS   84 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~   84 (225)
                      ..++|+|+|.|++|||||+|+|++.+-...+... |++.......+...+..+.++||+|..+          |... ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            5799999999999999999999997655444332 4666666666666777889999999432          2221 23


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-HH---c-CCeEEEe
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA-QK---E-GLFFLET  159 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~---~-~~~~~~~  159 (225)
                      ..+..+|++++|+|+..+-+-+. ......+.+   .+.++++++||+|+.+.+....++.++.. ..   . .++++.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            35778999999999997655433 222233333   37889999999999775434444433222 22   2 3569999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          160 SALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ||+++.++..+|+.+.........
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~~~~  355 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYECATR  355 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHHhcc
Confidence            999999999999987766554433

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=1.9e-17  Score=128.13  Aligned_cols=113  Identities=22%  Similarity=0.309  Sum_probs=80.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDS-----------------KATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQ   76 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~   76 (225)
                      +|+|+|+.++|||||+++|+........                 ....+.+.....+.+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432210                 011122222222221     345688999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ..|......++..+|++|+|+|+.+..+.. ...|+.....   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence            999888888999999999999998765443 2344444332   258999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.75  E-value=1e-17  Score=130.12  Aligned_cols=148  Identities=20%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHKSVKAQ   69 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (225)
                      +|+++|+.++|||||+.+|+...-.                             .......+++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999642100                             00111223444444444555678899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh------HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--CCCC
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS------FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ--RAVP  141 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~  141 (225)
                      +|||||+..|...+...+..+|++|+|+|+.+...      .......+..... .. ..|+++++||+|+...  ....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccHHH
Confidence            99999998888777777889999999999987421      1112222222222 11 3689999999999732  1111


Q ss_pred             ----HHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027292          142 ----TEDAKEFAQKEG-----LFFLETSALEATNVE  168 (225)
Q Consensus       142 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~  168 (225)
                          .+++..+....+     ++++++||++|.|+.
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                112223334443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.74  E-value=7.6e-17  Score=135.51  Aligned_cols=149  Identities=18%  Similarity=0.169  Sum_probs=99.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC-------cC-------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN-------EF-------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ..+.++|+++|++++|||||+++|++.       .+       ........+++.......+......+.|+||||++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            456799999999999999999999862       10       0011112344444445555556678899999999988


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAV---PTEDAKEFAQKEG--  153 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  153 (225)
                      .......+..+|++++|+|+.+....+ ..+++..+..   .+.|.+ +++||+|+.+....   ..+++..+...++  
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            877777888999999999998643222 2222333332   267755 57999999742211   1124555555543  


Q ss_pred             ---CeEEEeccCCCCC
Q 027292          154 ---LFFLETSALEATN  166 (225)
Q Consensus       154 ---~~~~~~Sa~~~~~  166 (225)
                         ++++++|+.++.+
T Consensus       165 ~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        165 GDDTPIIRGSALKALE  180 (396)
T ss_pred             cCceeEEecchhcccc
Confidence               5699999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=99.74  E-value=5.2e-17  Score=136.42  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=99.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------------CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS--------------LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ....++|+++|+.++|||||+++|++....              .......+++.......+......+.+|||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            456799999999999999999999863110              001112344444555556556678899999999998


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC--
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKEG--  153 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--  153 (225)
                      .......+..+|++++|+|+.+...... ..++..+...   +.| +|+++||+|+.+.....   .+++..+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            8777777889999999999986322221 2223333332   677 67889999987422211   124445555554  


Q ss_pred             ---CeEEEeccCCCC
Q 027292          154 ---LFFLETSALEAT  165 (225)
Q Consensus       154 ---~~~~~~Sa~~~~  165 (225)
                         ++++++||.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T PRK12736        165 GDDIPVIRGSALKAL  179 (394)
T ss_pred             cCCccEEEeeccccc
Confidence               579999999983

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.6e-18  Score=119.78  Aligned_cols=158  Identities=22%  Similarity=0.352  Sum_probs=117.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ...+|+++|-.|+|||+++.++.-++. ....|+.+.....    +..++.++++||..|+-..+..|.-|+.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            678999999999999999988876654 2334454444333    33478899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|.+|........ .++..+.+-...+..+++++||.|....  ....++...     .+..-+.+|++||.+|+|++.
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            99999977655543 3444444444456789999999998752  222222211     122235699999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          170 AFMTVLTEIFN  180 (225)
Q Consensus       170 ~f~~l~~~~~~  180 (225)
                      +++|+.+-+.+
T Consensus       170 ~~DWL~~~l~~  180 (182)
T KOG0072|consen  170 AMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.1e-16  Score=117.56  Aligned_cols=159  Identities=17%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRA   81 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   81 (225)
                      -+.+..+.|+++|.++||||||||+|++.........+.|.+.....+.+++.   +.+.|.||          .+.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            35567889999999999999999999997643344444455555555555443   78999999          455666


Q ss_pred             hhHhhhc---CCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc----
Q 027292           82 VTSAYYR---GAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE----  152 (225)
Q Consensus        82 ~~~~~~~---~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----  152 (225)
                      +...|+.   +..++++++|+.+.....  .+.+|+...      +.|+++++||+|.....+.. ..........    
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~  168 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCC
Confidence            6666665   347889999998754432  234444433      89999999999987632221 1122233222    


Q ss_pred             CCe--EEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          153 GLF--FLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       153 ~~~--~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ...  ++..|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222  7788999999999988887766543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=2e-16  Score=122.93  Aligned_cols=153  Identities=19%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-----------------------ceeeeEEEE-------------EEEC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKAT-----------------------IGVEFQTRT-------------LVIQ   62 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~   62 (225)
                      ||+++|+.++|||||+.+|..+.+.......                       .+.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999875553321100                       000000000             0011


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .....+.++||||++.|.......+.  .+|++++|+|+.....- ....++..+...   +.|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            23457899999999998765555554  78999999998864332 223333333333   7899999999998642211


Q ss_pred             C--HHHHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 027292          141 P--TEDAKEFAQ--------------------------KEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       141 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      .  .+++.++..                          ...+++|.+|+.+|+|+++++..|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  111222221                          0124799999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.73  E-value=9.6e-17  Score=134.90  Aligned_cols=150  Identities=16%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcC------------CC--CCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEF------------SL--DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      +...+.++|+++|+.++|||||+++|++...            ..  ......+++.....+.++.....+.||||||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            3456789999999999999999999974200            00  011112344444555565667789999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAVP---TEDAKEFAQKEG  153 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~---~~~~~~~~~~~~  153 (225)
                      .|..........+|++++|+|+.+...... .+.+..+...   +.|.+ +++||+|+.+.....   .++++.+....+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            998777777789999999999987322221 1222333322   56654 689999987532211   234556666654


Q ss_pred             -----CeEEEeccCCCC
Q 027292          154 -----LFFLETSALEAT  165 (225)
Q Consensus       154 -----~~~~~~Sa~~~~  165 (225)
                           ++++++|+.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 679999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.4e-16  Score=137.05  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=114.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--c
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAVTSAYY--R   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~   88 (225)
                      ..+|+++|.||+|||||+|+|++........|..+.+........  .+..++++|.||.-..      .....+++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~--~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY--KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe--cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            356999999999999999999998888888888666665555554  4445889999994322      12233333  3


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      ..|++|-|+|+++.+-.-.+.      .+..+.+.|+++++|++|...... ..-+.+++.+.+|+++++++|++|+|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLylt------lQLlE~g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLT------LQLLELGIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHH------HHHHHcCCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            679999999999765433322      222233899999999999987444 3355788999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      ++...+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9888877543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.73  E-value=4.5e-17  Score=113.28  Aligned_cols=156  Identities=23%  Similarity=0.357  Sum_probs=115.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..+||+++|-.++|||||+..|..... ..-.|+.+  +....+.+ ...+.+.+||..|+...+..|..|+.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            7789999999999999999999977543 33344434  33333333 35688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHH-HHHH----HHHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTED-AKEF----AQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|.++..-++.+..-+.++.+- ....+|+.+..||.|+...  ...++ +.++    .+..-.-+-++|+..++++.
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            999999988888876655555443 3467999999999998642  12222 2211    11122347889999999999


Q ss_pred             HHHHHHHH
Q 027292          169 NAFMTVLT  176 (225)
Q Consensus       169 ~~f~~l~~  176 (225)
                      .-.+|+..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            88887754

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=3.8e-16  Score=130.89  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=115.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ..+=|.++|+...|||||+..+-.........-..+-......+..+. ....+.|+|||||+.|..++.....-+|++|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            345689999999999999999988776555554444444444444432 3467899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cC--CeEEEeccCCCC
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EG--LFFLETSALEAT  165 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~~  165 (225)
                      +|+++++.--.+.    ...+......++|+++++||+|..+.   .++....-..+       |+  ..++++||++|+
T Consensus        84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999998322111    33344444459999999999999853   22333222222       32  459999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++++++.+.-....+
T Consensus       157 Gi~eLL~~ill~aev~  172 (509)
T COG0532         157 GIDELLELILLLAEVL  172 (509)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999877666555

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=3e-16  Score=125.02  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=81.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------------------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDS--------------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      -+|+|+|++|+|||||+++|+...-....                    ....+.+.......+.+.++.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999752111000                    0011334444455566778899999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      +|.......++.+|++|+|+|+.+.... ....|+.....   .+.|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            9888777788999999999999864322 22334433322   3789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.72  E-value=4.4e-16  Score=126.75  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=118.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhH
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTS   84 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~   84 (225)
                      ....+.|.++|.+++|||||+|.|.+........-..+.+.....+...+ +..+.+-||.|.         +.|.++.+
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence            45689999999999999999999997665444433334444555555543 667889999992         33555444


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                       -...+|+++.|+|++++...+.+..-...+.+....+.|+|+|.||+|+..+..    .......... ..+.+||+++
T Consensus       268 -E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~  341 (411)
T COG2262         268 -EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTG  341 (411)
T ss_pred             -HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccC
Confidence             356899999999999997777777766777777656799999999999765322    1111111122 4899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027292          165 TNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~~  183 (225)
                      .|++.+++.|...+.....
T Consensus       342 ~gl~~L~~~i~~~l~~~~~  360 (411)
T COG2262         342 EGLDLLRERIIELLSGLRT  360 (411)
T ss_pred             cCHHHHHHHHHHHhhhccc
Confidence            9999999999888875544

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=3.9e-16  Score=123.57  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=115.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--h-------hhhhHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--Y-------RAVTSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~-------~~~~~~~   86 (225)
                      ..+.|+|.|.|+||||||++.+.+.+......|.++.......+.  ....+++++||||.-+  .       .......
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            678999999999999999999999888777777655555554443  3556789999999211  1       1112223


Q ss_pred             hcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHHcCCeEEEeccCC
Q 027292           87 YRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQKEGLFFLETSALE  163 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~  163 (225)
                      -+-.++++|+||.+.  ..+.+.-..++..++....  .|+++|+||+|+.+.+..  +++.. +....+.....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeee
Confidence            345788999999986  4567777777888887765  899999999999863332  22333 3333344477888888


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~~  182 (225)
                      +.+.+.+-..+...+.+..
T Consensus       321 ~~~~d~~~~~v~~~a~~~~  339 (346)
T COG1084         321 GCGLDKLREEVRKTALEPL  339 (346)
T ss_pred             hhhHHHHHHHHHHHhhchh
Confidence            8889888888777765543

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=3.7e-16  Score=131.89  Aligned_cols=151  Identities=16%  Similarity=0.143  Sum_probs=101.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC--------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL--------------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      .....++|+++|++++|||||+++|++.....              ......+++.......+......+.|+||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            35567999999999999999999998641110              0111234444444455555667888999999998


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG-  153 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  153 (225)
                      |.......+..+|++++|+|+.....-. ....+..+...   +.| +|+++||+|+.+....   ..+++..+.+..+ 
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            8877777888999999999998643222 22223333322   677 7788999999752221   1123445555443 


Q ss_pred             ----CeEEEeccCCCCCH
Q 027292          154 ----LFFLETSALEATNV  167 (225)
Q Consensus       154 ----~~~~~~Sa~~~~~v  167 (225)
                          ++++++|+.+|.++
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence                57999999998743

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.70  E-value=9.3e-16  Score=120.10  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh------------hhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER------------YRA   81 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------~~~   81 (225)
                      ..+.++|+|+|.|++|||||.|.+++......+....++..... -.+.....++.|+||||.-.            +..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~il-gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL-GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeee-EEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            45689999999999999999999999888777665544444433 33445667899999999321            111


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-------------CCC--HHHHH
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR-------------AVP--TEDAK  146 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~--~~~~~  146 (225)
                      .....+..||.+++|+|+.+....- -.+.+..+..+.  +.|-++|+||.|.....             ...  ..+++
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            2344567899999999999622211 123344455553  68889999999975321             111  11111


Q ss_pred             -HHHHH---------cCC----eEEEeccCCCCCHHHHHHHHHHHH
Q 027292          147 -EFAQK---------EGL----FFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       147 -~~~~~---------~~~----~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                       ++...         .+.    .+|.+||.+|+|++++-++|+..+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence             11111         112    289999999999999999988654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.70  E-value=5e-16  Score=122.17  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhh---hhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRA---VTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~---~~~~~~~~   89 (225)
                      ...|.+||.|++|||||+++|.........++.++......++.+++.. .+.+-|+||.-+    -+.   .....+..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            5678999999999999999999877655555554555555555554333 388999999432    111   23334668


Q ss_pred             CCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCC
Q 027292           90 AVGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALE  163 (225)
Q Consensus        90 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  163 (225)
                      ++.++||+|++..   ..++++..+..++..+..  .+.|.++|+||+|+.+.   ....+.++++.+.-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence            8999999999998   888888777777655543  57899999999998632   122246677776655 99999999


Q ss_pred             CCCHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLT  176 (225)
Q Consensus       164 ~~~v~~~f~~l~~  176 (225)
                      ++++.++++.+.+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999999887654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=1.3e-15  Score=116.49  Aligned_cols=158  Identities=13%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccee---eeEEEEEEECCEEEEEEEEeCCCchhhhhh-----hHhhhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGV---EFQTRTLVIQHKSVKAQIWDTAGQERYRAV-----TSAYYRG   89 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~   89 (225)
                      ++|+|+|.+|+|||||+|.|++.........+.+.   +.....+.. .....+.+|||||.......     ....+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            78999999999999999999986554333222221   111111111 12346899999996432211     2223567


Q ss_pred             CCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-------CH----HHHHHHHH----HcC
Q 027292           90 AVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAV-------PT----EDAKEFAQ----KEG  153 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~----~~~~~~~~----~~~  153 (225)
                      +|+++++.+. +   +... ..|+..+...   +.|+++|+||+|+......       ..    ++.++.+.    ..+
T Consensus        81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8988888542 2   2222 3455555544   6789999999999431110       01    11222221    212


Q ss_pred             ---CeEEEeccC--CCCCHHHHHHHHHHHHHHHHh
Q 027292          154 ---LFFLETSAL--EATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       154 ---~~~~~~Sa~--~~~~v~~~f~~l~~~~~~~~~  183 (225)
                         .++|.+|+.  .+.++..+.+.++..+-++..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence               248999998  578999999999988876654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=1e-15  Score=130.12  Aligned_cols=152  Identities=16%  Similarity=0.198  Sum_probs=104.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   64 (225)
                      ..+.++|+++|+.++|||||+.+|+...-.                             .......+++.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            456799999999999999999988741100                             001122344444555556677


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-cEEEEEeCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD-------HIPRWLEELRSHADKNI-VIILIGNKSDLEE  136 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~  136 (225)
                      ...+.++|+||+++|.......+..+|++|+|+|+.+. .++       +..+.+..+..   .++ ++|+++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence            88999999999999999889999999999999999862 121       22222222222   256 4788999999862


Q ss_pred             CCC--C----CHHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292          137 QRA--V----PTEDAKEFAQKEG-----LFFLETSALEATNVEN  169 (225)
Q Consensus       137 ~~~--~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  169 (225)
                      ...  .    ..++++.++++.+     ++|+++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            111  0    1344666666665     5699999999999853

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=6.1e-16  Score=119.78  Aligned_cols=113  Identities=15%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEEC--------CEEEEEEEEeCC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQ--------HKSVKAQIWDTA   74 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   74 (225)
                      +|+++|+.++|||||+.+|+...-...                .....++........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999976321100                01111122222222232        347889999999


Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      |++.|......++..+|++|+|+|+.+....+....| ....   ..+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999976544432222 2222   2368999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=5e-16  Score=132.97  Aligned_cols=154  Identities=19%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------------------------CCcceeeeEEEEEEEC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-------------------------------KATIGVEFQTRTLVIQ   62 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   62 (225)
                      ....++|+++|+.++|||||+.+|+...-....                               ....+++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            456799999999999999999999763211110                               0111223333344455


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  142 (225)
                      .....+.||||||++.|.......+..+|++++|+|+.....-.....|. .+... . ..|+++++||+|+.+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHHH
Confidence            56678999999999998766666689999999999998643221111221 12111 1 247889999999974222112


Q ss_pred             HH----HHHHHHHc----CCeEEEeccCCCCCHHHH
Q 027292          143 ED----AKEFAQKE----GLFFLETSALEATNVENA  170 (225)
Q Consensus       143 ~~----~~~~~~~~----~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++    +..+....    .++++++||++|.|+.++
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            22    22233333    366999999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=4e-16  Score=124.85  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCC------C----------cceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSK------A----------TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      +|+++|++|+|||||+++|+.........      .          ..+.........+.+....+.+|||||+..|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532111100      0          0011222222233345678899999999988888


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE--EEec
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFF--LETS  160 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~S  160 (225)
                      +..++..+|++++|+|+.+.........| ..+..   .+.|.++++||+|+...  ...+....+...++..+  +.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeEEEEec
Confidence            88899999999999999976544333333 22322   37899999999998753  12233444444555543  3444


Q ss_pred             cCCCCCHHHHHHHH
Q 027292          161 ALEATNVENAFMTV  174 (225)
Q Consensus       161 a~~~~~v~~~f~~l  174 (225)
                      ..++.++..+.+.+
T Consensus       155 ~~~~~~~~~~vd~~  168 (268)
T cd04170         155 IGEGDDFKGVVDLL  168 (268)
T ss_pred             ccCCCceeEEEEcc
Confidence            56655555444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=5.2e-16  Score=123.75  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      +|+++|++++|||||+++|+...-..                ......+++.......+.+.+..+.+|||||+..|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            68999999999999999997421100                00112234444444445556788999999999988888


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      +...++.+|++|+|+|+.+...... ..++..+..   .+.|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8899999999999999987432222 223333332   3789999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=4.5e-16  Score=130.08  Aligned_cols=162  Identities=19%  Similarity=0.243  Sum_probs=118.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCc---------------CCCCCCCcceeeeEEEEEE-ECCEEEEEEEEeCCCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNE---------------FSLDSKATIGVEFQTRTLV-IQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~   76 (225)
                      +.++.-|+.|+.+...|||||..+|+...               ...+.....++......+. .++..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            45677899999999999999999997521               1122233333333333322 2356699999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCe
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKEGLF  155 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~  155 (225)
                      .+|.......+..+|++|+|+|++.....+.+..++..+..    +.-+|.|+||+|++..+.. ...++..+......+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999987666666665555533    6779999999999763321 122233344344456


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 027292          156 FLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+.+||++|.++.++|+.+++.+
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhC
Confidence            99999999999999999998875

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=8.3e-16  Score=129.58  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=96.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------------------------CCcceeeeEEEEEEECCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDS-------------------------------KATIGVEFQTRTLVIQHKSV   66 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   66 (225)
                      +||+++|+.++|||||+.+|+...-....                               ....+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999752211100                               01112233333444455667


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH----
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT----  142 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----  142 (225)
                      .+.||||||++.|.......+..+|++|+|+|+......+....|. .+... . ..++++++||+|+.+......    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~-~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-G-IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-C-CCcEEEEEEecccccchHHHHHHHH
Confidence            8999999999999777777889999999999998643222222222 22222 1 346888999999975222111    


Q ss_pred             HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 027292          143 EDAKEFAQKEG---LFFLETSALEATNVEN  169 (225)
Q Consensus       143 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  169 (225)
                      ++...+.+..+   ++++++||.+|.|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            22233334444   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.68  E-value=2.8e-15  Score=125.98  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=98.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------------CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS--------------LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ....++|+++|+.++|||||+++|++....              .......+++.......+......+.++||||+..|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            456799999999999999999999873110              001112344444455555556678899999999988


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAV---PTEDAKEFAQKE---  152 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~---~~~~~~~~~~~~---  152 (225)
                      .......+..+|++++|+|+....... ...++..+...   +.|.+ +++||+|+.+....   ...++..+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            777777889999999999998643222 22333333332   67865 58999999642211   112344444443   


Q ss_pred             --CCeEEEeccCCCCC
Q 027292          153 --GLFFLETSALEATN  166 (225)
Q Consensus       153 --~~~~~~~Sa~~~~~  166 (225)
                        +++++++|+.++.+
T Consensus       165 ~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        165 GDDTPIIRGSALKALE  180 (396)
T ss_pred             ccCCcEEEeecccccC
Confidence              35799999998753

>PLN03126 Elongation factor Tu; Provisional

Probab=99.67  E-value=1.2e-15  Score=130.35  Aligned_cols=150  Identities=15%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCc------CCC--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNE------FSL--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      .....++|+++|+.++|||||+++|++..      ...        ......+++.......+......+.+||+||++.
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            45678999999999999999999998521      110        1122234444444444555667889999999999


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc--
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKE--  152 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~--  152 (225)
                      |.......+..+|++++|+|+.+..... ..+++..+...   ++| +|+++||+|+.+....   ..+++..+....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            9888888888999999999998643222 23333333333   677 7889999999652211   112344454443  


Q ss_pred             ---CCeEEEeccCCCCC
Q 027292          153 ---GLFFLETSALEATN  166 (225)
Q Consensus       153 ---~~~~~~~Sa~~~~~  166 (225)
                         +++++++|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               46799999988753

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.66  E-value=2.6e-15  Score=127.69  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=101.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcC--C---------------------------CCCCCcceeeeEEEEEEECCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEF--S---------------------------LDSKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~   64 (225)
                      ..+.++|+++|+.++|||||+.+|+...-  .                           .......+.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            45678999999999999999999976110  0                           001112234444455556677


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC-
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SF---DHIPRWLEELRSHADKNIV-IILIGNKSDLEE-  136 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~-  136 (225)
                      ...+.|+||||+.+|.......+..+|++|+|+|+....   .+   .+..+.+..+...   ++| +|+++||+|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence            889999999999999888888899999999999998642   01   1222222223222   665 678999999532 


Q ss_pred             -CCCCC----HHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292          137 -QRAVP----TEDAKEFAQKEG-----LFFLETSALEATNVEN  169 (225)
Q Consensus       137 -~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  169 (225)
                       ..+..    .+++..+....+     ++++++|+.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             11111    223334444333     5699999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=2.2e-15  Score=120.65  Aligned_cols=143  Identities=13%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD----------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------   79 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------   79 (225)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+.+.+|||||...+      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999776543          2333344444455556677789999999993221      


Q ss_pred             ------------hh--------hhHhhhc--CCCEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           80 ------------RA--------VTSAYYR--GAVGAMLVYDISRRQSFDHIPRW-LEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        80 ------------~~--------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                                  ..        .+...+.  .+|+++++++..... +   ..| +..+..... ++|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l---~~~D~~~lk~l~~-~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-L---KPLDIEFMKRLSK-RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-C---CHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence                        00        0101222  468888888876421 1   111 222333333 689999999999854


Q ss_pred             CC--CCCHHHHHHHHHHcCCeEEEeccCC
Q 027292          137 QR--AVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      ..  ......+++.+..+++.+|......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            22  2234456677788889888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=6.4e-15  Score=123.28  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...+..+=|-|+|+...|||||+.+|-+...........+.......+..+ .+-.++|.|||||..|.+|+......+|
T Consensus       148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence            334456778899999999999999998876654444433333333334444 4478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH------HHcC--CeEEEeccC
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFA------QKEG--LFFLETSAL  162 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~------~~~~--~~~~~~Sa~  162 (225)
                      ++++|+.++|.---+    ..+.+......+.|+|+.+||+|.++.   .++.+. ++.      .++|  +.++++||+
T Consensus       227 IvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl  299 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISAL  299 (683)
T ss_pred             EEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence            999999999842212    134445555569999999999997642   334333 332      2333  458999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEI  178 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~  178 (225)
                      +|+|++.+-+.++-.+
T Consensus       300 ~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  300 TGENLDLLEEAILLLA  315 (683)
T ss_pred             cCCChHHHHHHHHHHH
Confidence            9999999877665443

>PLN03127 Elongation factor Tu; Provisional

Probab=99.65  E-value=5.2e-15  Score=125.66  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC------cCCC--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN------EFSL--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ....++|+++|+.++|||||+++|.+.      ....        ......+++.......+......+.|+||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            456799999999999999999999631      1000        01112334445555566666778999999999988


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc---
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKE---  152 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~---  152 (225)
                      .......+..+|++++|+|+.+....+ ..+.+..+..   .+.| +|+++||+|+.+.....   ..++.++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            776666777899999999998643221 1222222322   2678 57889999997522211   11233333332   


Q ss_pred             --CCeEEEeccC
Q 027292          153 --GLFFLETSAL  162 (225)
Q Consensus       153 --~~~~~~~Sa~  162 (225)
                        .++++++|+.
T Consensus       214 ~~~vpiip~Sa~  225 (447)
T PLN03127        214 GDEIPIIRGSAL  225 (447)
T ss_pred             CCcceEEEeccc
Confidence              3568888875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=4.1e-15  Score=131.98  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------C------------------CcceeeeEEEEEEEC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-------------K------------------ATIGVEFQTRTLVIQ   62 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~   62 (225)
                      ....++|+++|++++|||||+++|+...-....             .                  ...+++.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999864321110             0                  001222223333344


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  142 (225)
                      .....+.|+||||++.|.......+..+|++++|+|+......+.... +..+... . ..+++|++||+|+.+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~-~-~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL-G-IRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh-C-CCeEEEEEEecccccchhHHH
Confidence            556678899999999887666667889999999999976432221111 1222222 1 357889999999964221111


Q ss_pred             ----HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 027292          143 ----EDAKEFAQKEG---LFFLETSALEATNVEN  169 (225)
Q Consensus       143 ----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  169 (225)
                          .++.++....+   ++++++||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                22333344445   3599999999999874

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=7.7e-15  Score=131.49  Aligned_cols=120  Identities=15%  Similarity=0.180  Sum_probs=84.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------CCCC---CcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS-------------LDSK---ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      +.+...+|+|+|+.++|||||+++|+...-.             ..+.   ...+.+.......+.+....+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            3456789999999999999999999853210             0000   01122222222333445778999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .+|...+..+++.+|++|+|+|+.+.........| ..+..   .+.|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99998899999999999999999986655544444 33332   3789999999999863

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.64  E-value=3.7e-15  Score=115.50  Aligned_cols=162  Identities=17%  Similarity=0.283  Sum_probs=99.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCCCE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-----VTSAYYRGAVG   92 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~   92 (225)
                      ||+++|+.++||||+.+.++.+-.+.+... ..+.+.....+. ....+.+.+||+||+..+..     .....++.+++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999998887644322211 112222322222 24556899999999875433     35678899999


Q ss_pred             EEEEEeCCChh---hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CC----CHHHHHHHHHHcC---CeEEEec
Q 027292           93 AMLVYDISRRQ---SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AV----PTEDAKEFAQKEG---LFFLETS  160 (225)
Q Consensus        93 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~~S  160 (225)
                      +|||+|+...+   .+..+...+..+.+..+ +..+-+.++|+|+..+.  ..    ..+.+.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999999543   33344445555555544 88899999999985411  10    1112333344445   6799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 027292          161 ALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ..+. .+-++|..+++.+.-+..
T Consensus       159 I~D~-Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  159 IWDE-SLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             TTST-HHHHHHHHHHHTTSTTHC
T ss_pred             CcCc-HHHHHHHHHHHHHcccHH
Confidence            9984 688888888887764433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.63  E-value=6.5e-15  Score=125.01  Aligned_cols=164  Identities=16%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcC---CCCCCCcceeeeEEEEE---------------EEC------------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEF---SLDSKATIGVEFQTRTL---------------VIQ------------   62 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------   62 (225)
                      .....++|.++|+...|||||+.+|.+...   ..+.....+++......               .+.            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346679999999999999999999986322   11221221111111100               000            


Q ss_pred             ----CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           63 ----HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        63 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                          .....+.|+|+||++.|.......+..+|++++|+|+.+.-...+..+.+..+ .... -.++|+++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lg-i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMK-LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcC-CCcEEEEEecccccCHH
Confidence                01246889999999999888788888999999999998631111122222222 2222 24688999999997522


Q ss_pred             CC--CHHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          139 AV--PTEDAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       139 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ..  ..++++++...   .+++++++||++|.|++.+++.|.+.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            11  11223333322   356799999999999999998887643

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=1.9e-14  Score=100.59  Aligned_cols=106  Identities=21%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhhc
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTSAYYR   88 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   88 (225)
                      +|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++..  +.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999985432 2222222233333334444444  46999999432         1112333458


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK  131 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  131 (225)
                      .+|++++|+|..+... +....+++.+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877322 22333344442    47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=2.3e-14  Score=109.45  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=94.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC--CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hh---hH
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSK--ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AV---TS   84 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~---~~   84 (225)
                      ++|+|+|.+|+|||||+|.|++........  +..+.........  ..+..+.++||||.....        .+   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~--~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV--WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE--ECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543332  1112222222222  245678999999943321        11   11


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeE
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK--NIVIILIGNKSDLEEQRAV------PTEDAKEFAQKEGLFF  156 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~  156 (225)
                      .....+|++|+|+++.+ .+.+ ....++.+.+....  -.++++++|+.|.......      .....+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22467899999999987 2222 12233444443321  2568888899986543211      1234556666666666


Q ss_pred             EEecc-----CCCCCHHHHHHHHHHHHHH
Q 027292          157 LETSA-----LEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       157 ~~~Sa-----~~~~~v~~~f~~l~~~~~~  180 (225)
                      +..+.     ..+.++.++++.+-+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            55554     3456677777766666554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=1.2e-14  Score=118.15  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE---------------------EC-CEEEEEEEEeCCCc-
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV---------------------IQ-HKSVKAQIWDTAGQ-   76 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~Dt~G~-   76 (225)
                      |+++|.++||||||+++|++........|.++.+.......                     .+ ...+.+++|||||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998765433222222222221111                     11 24478999999996 


Q ss_pred             ---hhhhhhhHh---hhcCCCEEEEEEeCC
Q 027292           77 ---ERYRAVTSA---YYRGAVGAMLVYDIS  100 (225)
Q Consensus        77 ---~~~~~~~~~---~~~~~d~~i~v~d~~  100 (225)
                         +++..+...   .++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               445544444   488999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1.9e-14  Score=118.82  Aligned_cols=160  Identities=21%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcC---------------cCCCCCCCcceeeeEEEEEEE---CCEEEEEEEEeCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARN---------------EFSLDSKATIGVEFQTRTLVI---QHKSVKAQIWDTA   74 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~   74 (225)
                      +..+.-|..++.+-..|||||..+|+..               .-..+..+..++......+.+   ++..+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            3455667889999999999999999752               112233344444444444443   4588999999999


Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL  154 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  154 (225)
                      ||-.|.-...+.+..+.++++|+|++..-..+.+...|..+.+    +.-+|-|+||+||+...  .....++...-.|+
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~eIe~~iGi  158 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGI  158 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHHHHHHHhCC
Confidence            9999988888889999999999999987666666666666644    66799999999997532  22334455566676


Q ss_pred             e---EEEeccCCCCCHHHHHHHHHHHH
Q 027292          155 F---FLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       155 ~---~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +   .+.+||++|.|+.++++.|++.+
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhC
Confidence            5   79999999999999999998875

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.61  E-value=2.2e-14  Score=114.23  Aligned_cols=166  Identities=16%  Similarity=0.096  Sum_probs=113.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   89 (225)
                      ..-|.+||.|++|||||++.+.........++-++....-..+.. ...-.+.+=|+||.-+       ...-....+..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            456789999999999999999987665555555444444444444 4445688899999321       11112334567


Q ss_pred             CCEEEEEEeCCChh---hHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCC
Q 027292           90 AVGAMLVYDISRRQ---SFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALE  163 (225)
Q Consensus        90 ~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  163 (225)
                      +-++++|+|++..+   ..+.......++..+..  .+.|.+||+||+|+....+........+.+..+.. ++.+|+.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            89999999998644   35555555666665542  57999999999997653333333344455555544 22299999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 027292          164 ATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~~~  183 (225)
                      +.|++++...+.+.+.+...
T Consensus       318 ~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         318 REGLDELLRALAELLEETKA  337 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhhh
Confidence            99999999998888877754

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.60  E-value=1.7e-14  Score=124.67  Aligned_cols=119  Identities=15%  Similarity=0.214  Sum_probs=84.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR--NEFSLD------------------SKATIGVEFQTRTLVIQHKSVKAQIWDT   73 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   73 (225)
                      ....-+|+|+|+.++|||||+++|+.  +.....                  .....+++.......+...++.+.+|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            34567999999999999999999974  111000                  0111233444444455566788999999


Q ss_pred             CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ||+..|.......++.+|++|+|+|+.+.... ....++.....   .+.|+++++||+|+..
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            99999988778889999999999999874322 22333433332   3799999999999865

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=4.2e-14  Score=126.63  Aligned_cols=146  Identities=15%  Similarity=0.101  Sum_probs=95.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-----CCC-----------CcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL-----DSK-----------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      ..+...+|.|+|++++|||||+++|+...-..     ...           ...+++.......+...+..+.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            45567799999999999999999997521110     000           01233333334444456678999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-  155 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  155 (225)
                      ..|...+...+..+|++|+|+|+.+....... .++..+..   .+.|+++++||+|+....  .......+...++.. 
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~  159 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA  159 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence            98888888899999999999999875444332 22333332   368999999999997532  122233444443321 


Q ss_pred             ---EEEeccCCC
Q 027292          156 ---FLETSALEA  164 (225)
Q Consensus       156 ---~~~~Sa~~~  164 (225)
                         .+++|+..+
T Consensus       160 ~~~~ipis~~~~  171 (689)
T TIGR00484       160 VPIQLPIGAEDN  171 (689)
T ss_pred             eeEEeccccCCC
Confidence               455555444

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.2e-13  Score=109.25  Aligned_cols=161  Identities=22%  Similarity=0.171  Sum_probs=110.7

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hh
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RA   81 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~   81 (225)
                      ...-.+..-..++++|.|++|||||++.|.+........+.++.+.....+.  ..+..+++.|+||.-.=       ..
T Consensus        55 gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~--Y~ga~IQild~Pgii~gas~g~grG~  132 (365)
T COG1163          55 GFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE--YKGAQIQLLDLPGIIEGASSGRGRGR  132 (365)
T ss_pred             cceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe--ecCceEEEEcCcccccCcccCCCCcc
Confidence            4444566778999999999999999999999877666665544444444444  46678899999983221       12


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhh-HHhHHHHHH-----------------------------------------HHHhhc
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLE-----------------------------------------ELRSHA  119 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~  119 (225)
                      ......++||++|+|+|+....+ .+.+.+.+.                                         .+.++.
T Consensus       133 ~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~  212 (365)
T COG1163         133 QVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYR  212 (365)
T ss_pred             eeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhC
Confidence            24456789999999999986544 444432221                                         111111


Q ss_pred             ---------------------C---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292          120 ---------------------D---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       120 ---------------------~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                                           .   .=+|.+.|.||.|+..     .++...+.+..  ..+.+||+.+.|++++.+.+.
T Consensus       213 I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~  285 (365)
T COG1163         213 IHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIW  285 (365)
T ss_pred             cccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHH
Confidence                                 0   0278899999999874     34455555444  689999999999999888776


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       286 ~~L  288 (365)
T COG1163         286 DVL  288 (365)
T ss_pred             Hhh
Confidence            655

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.5e-14  Score=112.09  Aligned_cols=163  Identities=15%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSA   85 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~   85 (225)
                      .....++|+++|.+|+|||||||+|+.++..+......+.+........ ...-.+.+||+||-++       |+.....
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~-~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS-YDGENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh-ccccceEEecCCCcccchhhhHHHHHHHHH
Confidence            3456799999999999999999999976665544333233332222221 2235688999999443       7778888


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--------CCCCHHHH----------HH
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ--------RAVPTEDA----------KE  147 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~----------~~  147 (225)
                      ++...|.++++.++.++.---. .++++.+..... +.++++++|.+|...+        .....+..          .+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999987642211 233444433332 5889999999998653        11222211          11


Q ss_pred             HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          148 FAQKEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      ++++ --+++..+...+-|++.+...+++.+-
T Consensus       192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1111 124777888999999999998888764

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=9.5e-14  Score=124.36  Aligned_cols=119  Identities=15%  Similarity=0.119  Sum_probs=82.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-----CC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL-----DS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .+...+|.|+|+.++|||||+++|+...-..     ..           ....+++.......+...+..+.+|||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            4567899999999999999999997521100     00           0112233333333344466789999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .|...+...+..+|++|+|+|+.+....... ..+..+..   .+.|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8888888899999999999999875433222 22233332   3689999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=99.58  E-value=5.1e-14  Score=121.79  Aligned_cols=119  Identities=17%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC------------------CCCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSL------------------DSKATIGVEFQTRTLVIQHKSVKAQIWDT   73 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   73 (225)
                      .....+|+|+|++++|||||+++|+..  ....                  ......+++.......+++.++.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            456789999999999999999998641  1100                  00112244555555556677889999999


Q ss_pred             CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ||+..|.......+..+|++|+|+|+.+... .....++.....   .+.|+++++||+|+..
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            9999888777778899999999999986421 122334443332   3789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.2e-14  Score=118.84  Aligned_cols=169  Identities=22%  Similarity=0.218  Sum_probs=112.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhh--------hh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRA--------VT   83 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~--------~~   83 (225)
                      ..+.-+.|+|+|.|++|||||+|.|.+.+.....+.. |++.......++-.++++.+.||+|..+ -..        -.
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            3445599999999999999999999998765554333 5777777777778889999999999554 111        12


Q ss_pred             HhhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHc--
Q 027292           84 SAYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHAD------KNIVIILIGNKSDLEEQ-RAVPTEDAKEFAQKE--  152 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~--  152 (225)
                      ...+..+|++++|+|+..  -++-..+.+.+......+.      ...|++++.||.|+..+ ++....-+.......  
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~  422 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS  422 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc
Confidence            335678999999999943  2222222333333322221      24789999999999753 222221122222211  


Q ss_pred             CCe-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          153 GLF-FLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       153 ~~~-~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      ..+ +.++|+++++|++.+.+.+.+.+.+..
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            223 566999999999999988888777663

>PRK09866 hypothetical protein; Provisional

Probab=99.56  E-value=3.7e-13  Score=115.96  Aligned_cols=108  Identities=13%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             EEEEEeCCCchh-----hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292           67 KAQIWDTAGQER-----YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP  141 (225)
Q Consensus        67 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  141 (225)
                      .+.|+||||...     ........+..+|+++||+|..+..+... ...++.+... ..+.|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            478899999543     23334457899999999999987433222 1223334332 2136999999999986533333


Q ss_pred             HHHHHHHHH----HcC---CeEEEeccCCCCCHHHHHHHHHH
Q 027292          142 TEDAKEFAQ----KEG---LFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       142 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      .+.+..+..    ..+   ..+|++||+.|.|++.+++.|.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            455555432    222   24999999999999999998877

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.56  E-value=3.1e-14  Score=118.13  Aligned_cols=175  Identities=17%  Similarity=0.163  Sum_probs=125.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----hhh-----hH
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----RAV-----TS   84 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~-----~~   84 (225)
                      .+++-.++|+|.|++|||||++.+..........+.++...+...+.  ..-...+++||||.-..    ..+     ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            34567899999999999999999998887766665544444443332  34456778899994321    001     11


Q ss_pred             hhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHHcCCeEEEe
Q 027292           85 AYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED---AKEFAQKEGLFFLET  159 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  159 (225)
                      ...+--.+|+|+.|++.  ..|.+.-..++..++.... +.|+|+|+||+|+......+.+.   .+.+....+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            12233456899999986  4566666777888877776 89999999999997755555433   334445556899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhcccccCC
Q 027292          160 SALEATNVENAFMTVLTEIFNIVNKKNLTAGE  191 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~  191 (225)
                      |+.+.+||.++.......++..+-++......
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~  353 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAARVEQKLKSES  353 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999888776665544

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.56  E-value=6.2e-15  Score=109.64  Aligned_cols=115  Identities=21%  Similarity=0.323  Sum_probs=70.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHh---hhcCCCEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSA---YYRGAVGA   93 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~   93 (225)
                      ..|+++|+.|+|||+|+..|..+......... ....   .... ......+.++|+|||++.+.....   +...+-++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998543322211 1111   1111 234456889999999987764444   47889999


Q ss_pred             EEEEeCCC-hhhHHhHHH-HHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 027292           94 MLVYDISR-RQSFDHIPR-WLEELRSHA--DKNIVIILIGNKSDLEE  136 (225)
Q Consensus        94 i~v~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~piilv~nK~Dl~~  136 (225)
                      |||+|... ........+ ++..+....  ....|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999985 334444433 333333222  35799999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.56  E-value=2.8e-14  Score=97.47  Aligned_cols=136  Identities=22%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----hhhhhhhHhhhcCCCEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----ERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~~~~~~~~~~~~~~d~~i   94 (225)
                      ||+++|..|+|||||.+.+.+...  -+..|...++..       .    -.+||||.    ..+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            799999999999999999987643  233332233221       1    14799993    333334445567899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT  173 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~~  173 (225)
                      +|-+++++.+.-.     ..+...  ...|+|-|++|.|+++  ....+..++|..+-|.. +|++|+.++.|+++++.+
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999998765321     111111  1466899999999985  23456678888888875 999999999999999988


Q ss_pred             HHH
Q 027292          174 VLT  176 (225)
Q Consensus       174 l~~  176 (225)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            754

>PRK00007 elongation factor G; Reviewed

Probab=99.54  E-value=2.1e-13  Score=122.15  Aligned_cols=146  Identities=15%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhc--CcCCC---CC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFAR--NEFSL---DS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      +.+...+|.|+|++++|||||+++|+.  +....   ..           ....+++.......+.+.+..+.++||||+
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~   85 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH   85 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence            355678999999999999999999974  11100   00           012223333333334445678999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--  154 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  154 (225)
                      ..|.......+..+|++|+|+|+......+....| ..+..   .+.|+++++||+|+.+..  ......++...++.  
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~  159 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANP  159 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCe
Confidence            88877777788999999999998865433332222 22332   368899999999997532  22333444444443  


Q ss_pred             --eEEEeccCCC
Q 027292          155 --FFLETSALEA  164 (225)
Q Consensus       155 --~~~~~Sa~~~  164 (225)
                        ..+++|+..+
T Consensus       160 ~~~~ipisa~~~  171 (693)
T PRK00007        160 VPIQLPIGAEDD  171 (693)
T ss_pred             eeEEecCccCCc
Confidence              2455665554

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=5.9e-14  Score=100.44  Aligned_cols=155  Identities=15%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..-|++++|-.++|||||++.|...... ...||.-.+.....    -.++.++.+|..|+-.-+..|..++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            3468999999999999999999776543 23333222222211    256778899999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH---HHHc-----------C---CeEE
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF---AQKE-----------G---LFFL  157 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~-----------~---~~~~  157 (225)
                      .+|+.+.+-+.+.+.-+..+.... -.+.|+++.+||+|....  .+.++.+..   ....           +   +.+|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999998888877777765554 258999999999998753  244443321   1111           1   2367


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 027292          158 ETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       158 ~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      .||...+.+..+.|.|+.+.
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            88988888888888877654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.5e-13  Score=112.11  Aligned_cols=155  Identities=19%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   64 (225)
                      ....++++|+|+..+|||||+-+|+...-.                             ....+..+.+.......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            346789999999999999999998762110                             111233355666666666777


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      .+.+.|+|+||+..|-........+||++|||+|+.+.+   .+.  ...+....+..... -..+|+++||+|+.+-++
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence            788999999999999988888899999999999998753   221  11122222333333 345888999999986333


Q ss_pred             CCHHH----HHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292          140 VPTED----AKEFAQKEG-----LFFLETSALEATNVEN  169 (225)
Q Consensus       140 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~v~~  169 (225)
                      ...++    +..+.+..|     ++|+++|+..|.|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            33333    233333333     5699999999999764

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.52  E-value=6.7e-13  Score=111.06  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI---------------------Q-HKSVKAQIWDTAG   75 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G   75 (225)
                      ++|+++|.++||||||+|+|++........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987765433333232222222111                     1 2346789999999


Q ss_pred             c----hhhhhhhHhh---hcCCCEEEEEEeCC
Q 027292           76 Q----ERYRAVTSAY---YRGAVGAMLVYDIS  100 (225)
Q Consensus        76 ~----~~~~~~~~~~---~~~~d~~i~v~d~~  100 (225)
                      .    .....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2333344444   88999999999996

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.51  E-value=8.3e-13  Score=104.51  Aligned_cols=162  Identities=17%  Similarity=0.327  Sum_probs=119.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGA---   90 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~---   90 (225)
                      .--+|+|+|+.|+||||||.+|.+.+   .+.+..+.+|....++.+.  ...++.+|-..|+.-+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34689999999999999999998865   4555556777766665433  345678898889877777766665533   


Q ss_pred             -CEEEEEEeCCCh-hhHHhHHHHHHHHHhhcC------------------------------------------------
Q 027292           91 -VGAMLVYDISRR-QSFDHIPRWLEELRSHAD------------------------------------------------  120 (225)
Q Consensus        91 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~------------------------------------------------  120 (225)
                       -++|++.|++++ .-++.+..|...+.++..                                                
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             468889999987 556667777543322110                                                


Q ss_pred             -------------CCCcEEEEEeCCCCC----CCCCCC-------HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292          121 -------------KNIVIILIGNKSDLE----EQRAVP-------TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       121 -------------~~~piilv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                                   .++|++||++|+|..    .+-+..       ...+++||..+|+.+|.+|+++..|++-+..+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         158999999999983    222222       22367889999999999999999999999999998


Q ss_pred             HHHH
Q 027292          177 EIFN  180 (225)
Q Consensus       177 ~~~~  180 (225)
                      +++-
T Consensus       288 r~yG  291 (473)
T KOG3905|consen  288 RSYG  291 (473)
T ss_pred             HhcC
Confidence            8754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=9.1e-13  Score=98.40  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc---CCCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR---GAVGAM   94 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i   94 (225)
                      -.|+++|..++|||+|+-.|..+.......   .++.....+.+  ..-.++++|.|||++.+.-...+++   .+-++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            579999999999999999999884433221   12222222222  2223789999999998876666666   789999


Q ss_pred             EEEeCCC-hhhHHhH-HHHHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027292           95 LVYDISR-RQSFDHI-PRWLEELRSH--ADKNIVIILIGNKSDLE  135 (225)
Q Consensus        95 ~v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~piilv~nK~Dl~  135 (225)
                      ||+|..- ......+ ..++..+...  +....|++++.||.|+.
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            9999875 2223333 3344444444  35679999999999984

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=1e-12  Score=117.75  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             EcCCCCCHHHHHHHHhcCcCCCCC----------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh
Q 027292           23 IGDSAVGKSQILARFARNEFSLDS----------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAY   86 (225)
Q Consensus        23 lG~~g~GKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   86 (225)
                      +|+.++|||||+++|+...-....                ....+++.......+...++.+.+|||||+..|...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653211000                0011222333333344456889999999999888888888


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      +..+|++++|+|++..........| ..+..   .+.|+++|+||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            9999999999999876554433333 23322   378999999999985

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.48  E-value=7.5e-13  Score=105.81  Aligned_cols=152  Identities=23%  Similarity=0.223  Sum_probs=109.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCcceeeeEEEEEEEC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-------------------------------LDSKATIGVEFQTRTLVIQ   62 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   62 (225)
                      ....+|++.+|...=||||||-+|++..-.                               .......|++.......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            345789999999999999999999762110                               0112444666666666667


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  142 (225)
                      ....+|.+-|||||++|..........+|++|+++|+...  ...-.+-...+..... -..++|.+||+||.+..+...
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            7888999999999999998888888899999999999642  1111111222333332 356899999999988655444


Q ss_pred             HH----HHHHHHHcCCe---EEEeccCCCCCHH
Q 027292          143 ED----AKEFAQKEGLF---FLETSALEATNVE  168 (225)
Q Consensus       143 ~~----~~~~~~~~~~~---~~~~Sa~~~~~v~  168 (225)
                      +.    -..|+.++++.   ++++||..|.||-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            43    34577788764   9999999999875

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.47  E-value=2.7e-13  Score=121.84  Aligned_cols=119  Identities=14%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC---------------cCCCC---CCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN---------------EFSLD---SKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      .+...||+|+|+.++|||||+++|+..               .+...   +..+.........+.+++..+.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            345789999999999999999999752               11111   111222222222233567788999999999


Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      +..|.......+..+|++|+|+|+...-..+....|. .+.   ..+.|+++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence            9998888888999999999999998743322222222 222   23678889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.46  E-value=1.3e-12  Score=100.90  Aligned_cols=161  Identities=16%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhh----H
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVT----S   84 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~----~   84 (225)
                      ++|+|+|.+|+||||++|.+++.........  ..+..........  .+..+.++||||-..       .....    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~--~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV--DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE--TTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee--cceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999999776544421  1122233323333  346688999999221       11111    1


Q ss_pred             hhhcCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-------HHHHHHHHHHcCCeE
Q 027292           85 AYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-------TEDAKEFAQKEGLFF  156 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~  156 (225)
                      ...+..|++|||+...+... -..+..++..+....- -..++||.|..|........       ....+.+.+..+-.|
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~  157 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY  157 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence            23457899999999984321 1122233333322211 13477777888765433311       122455666677778


Q ss_pred             EEeccC------CCCCHHHHHHHHHHHHHHH
Q 027292          157 LETSAL------EATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       157 ~~~Sa~------~~~~v~~~f~~l~~~~~~~  181 (225)
                      ...+.+      ....+.++|+.+-+.+.+.
T Consensus       158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            877766      2345677777666665554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.45  E-value=2.7e-12  Score=101.17  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=73.5

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCchhhh------h---
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------A---   81 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~---   81 (225)
                      +..+..++|+|+|.+|+|||||+|+|++......... ..+.....  ......+..+.+|||||.....      .   
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence            3456789999999999999999999999765333221 11222222  2222344678999999954331      0   


Q ss_pred             -hhHhhhc--CCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 027292           82 -VTSAYYR--GAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADK--NIVIILIGNKSDLEE  136 (225)
Q Consensus        82 -~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  136 (225)
                       ....++.  ..|++++|..++... ... -...++.+.+....  -.++++|.||+|...
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence             0122332  578888887666422 211 12334444443331  146999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=3.5e-12  Score=102.26  Aligned_cols=122  Identities=10%  Similarity=0.070  Sum_probs=72.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------hH
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-------TS   84 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~   84 (225)
                      .....++|+|+|.+|+||||++|+|++........ ...+.........  ..+..+.+|||||.......       ..
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            34578999999999999999999999876533221 1111222122222  24578999999996543211       11


Q ss_pred             hhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCC
Q 027292           85 AYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEE  136 (225)
Q Consensus        85 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  136 (225)
                      .++  ...|+++||..++...-.+.-...++.+.....  .-.++||+.|+.|...
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            122  268999999765532111111223344444332  1246899999999764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.44  E-value=5.7e-12  Score=115.45  Aligned_cols=144  Identities=18%  Similarity=0.175  Sum_probs=95.1

Q ss_pred             CHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE----------------EEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           29 GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK----------------SVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        29 GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +||||+.+|-+...........+.......+..+..                ...+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            399999999887765554444443333333332210                1138999999999999888888889999


Q ss_pred             EEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH------------HH-HHHH--------
Q 027292           93 AMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT------------ED-AKEF--------  148 (225)
Q Consensus        93 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~------------~~-~~~~--------  148 (225)
                      +++|+|+++   +.+.+.+    ..+..   .+.|+++|+||+|+...+....            +. ..++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   3343332    22222   2689999999999964322110            00 1111        


Q ss_pred             --HHH-------------c--CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          149 --AQK-------------E--GLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       149 --~~~-------------~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                        ..+             +  .++++++||++|+|+++++.+|.....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              011             1  356999999999999999988765543

>cd00066 G-alpha G protein alpha subunit

Probab=99.42  E-value=9.4e-12  Score=101.72  Aligned_cols=119  Identities=23%  Similarity=0.261  Sum_probs=83.8

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEELRSHA-DKNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~  132 (225)
                      ..+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+.+.. -.+.|++|++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            456788999999999999999999999999999999874          22333333333333322 2579999999999


Q ss_pred             CCCC----------------CCCCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          133 DLEE----------------QRAVPTEDAKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       133 Dl~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      |+..                ......+.+..+...          ..+....++|.+..++..+|+.+.+.+++..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9621                102233444333221          2244677899999999999999999888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.42  E-value=5e-12  Score=106.88  Aligned_cols=169  Identities=20%  Similarity=0.241  Sum_probs=128.0

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      .+++.....+.+.|+|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+.+.- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            34566778999999999999999999999999888877677666777777777777777888887754 222222222 6


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  167 (225)
                      .+|+++++||.+++.+++.+...++.-...  ...|+++|++|+|+.+..+...-.-.+++++++++ .+.+|.+.... 
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence            789999999999999999877666554333  48999999999999875433323338899999987 67777775333 


Q ss_pred             HHHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNIV  182 (225)
Q Consensus       168 ~~~f~~l~~~~~~~~  182 (225)
                      ..+|..|...+.--+
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            888988888776555

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.7e-12  Score=110.93  Aligned_cols=163  Identities=18%  Similarity=0.185  Sum_probs=110.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------------HKSVKAQIWDTAGQERY   79 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~   79 (225)
                      ..+-++|+|+..+|||-|+..+-+.........+.+.......+...                .....+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            45779999999999999999998765554443332222222111110                11234789999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-------------CHH
Q 027292           80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-------------PTE  143 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------~~~  143 (225)
                      ..++......+|.+|+|+|+.+   +.+.+.    ++.+   ...+.|+||.+||+|..-.|..             ..+
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHH----HHHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            9999999999999999999997   334333    2333   3348999999999997422210             000


Q ss_pred             H-----------HHHHHHH-cC-------------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhc
Q 027292          144 D-----------AKEFAQK-EG-------------LFFLETSALEATNVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       144 ~-----------~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~  185 (225)
                      .           +.+|+.+ ++             +.++++||..|+||.+++-+|++.....+.++
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            0           1122211 11             24788999999999999999999988777644

>PTZ00258 GTP-binding protein; Provisional

Probab=99.39  E-value=1.2e-11  Score=102.58  Aligned_cols=87  Identities=16%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER   78 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   78 (225)
                      ....++|.|+|.|++|||||+|+|.+........|.++.+.....+.+.+.               ..++.++||||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            456789999999999999999999887765555555555555544443322               23589999999431


Q ss_pred             -------hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 -------YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 -------~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                             ........++.+|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1112233567899999999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.38  E-value=1.7e-12  Score=102.33  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF  155 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  155 (225)
                      +++..+...++.++|++++|||+.++. +++.+.+|+..+..   .+.|+++|+||+|+.+.+....+....+ ..++..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            577778888999999999999999877 89999999987654   3799999999999975443333334333 457889


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 027292          156 FLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ++++||+++.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.38  E-value=3.4e-12  Score=116.48  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=81.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEEEE--------------C
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTLVI--------------Q   62 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~   62 (225)
                      ..+...+|+|+|+.++|||||+++|+...-..                +.....++......+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            45667899999999999999999998633110                00111111111111211              1


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ...+.+.++||||+..|.......++.+|++|+|+|+...-.......|.. +.   ..+.|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HH---HCCCCEEEEEECCccc
Confidence            236788999999999999888889999999999999997544333333332 22   2378999999999986

>PRK13768 GTPase; Provisional

Probab=99.37  E-value=5.4e-12  Score=99.94  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             EEEEEeCCCchhh---hhhhHhh---hcC--CCEEEEEEeCCChhhHHhH--HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           67 KAQIWDTAGQERY---RAVTSAY---YRG--AVGAMLVYDISRRQSFDHI--PRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        67 ~~~l~Dt~G~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .+.+||+||+.+.   ...+..+   +..  .+++++|+|+.........  ..|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5899999997663   2333222   222  8999999999764432222  2333322222 23799999999999975


Q ss_pred             CCCCCHHHHHH----------------------------HHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          137 QRAVPTEDAKE----------------------------FAQKEG--LFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       137 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ..+.  +...+                            ..+..+  .+++++|++++.|+++++++|.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3221  11111                            122333  4689999999999999999987765

>TIGR00101 ureG urease accessory protein UreG

Probab=99.35  E-value=2.3e-11  Score=92.93  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=64.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA  145 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (225)
                      ..+.++++.|.........   .-+|.+|.|+|+.+..+...  .+...+      ...-++++||+|+.+......+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            4566788888422111111   12688999999987655321  111111      122378889999985322334444


Q ss_pred             HHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          146 KEFAQK--EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       146 ~~~~~~--~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+..+.  .+++++++|+++|.|++++|+++.+..
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444444  457799999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=7.6e-12  Score=114.02  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEEC--------CEEEEEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQ--------HKSVKAQ   69 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~   69 (225)
                      .+...+|+|+|+.++|||||+++|+...-...                .....++......+.+.        .....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45566999999999999999999986321110                01111111111122222        2267799


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ++||||+..|.......++.+|++|+|+|+...-......-| ..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999999988888889999999999999875433332223 33332   368999999999986

>smart00275 G_alpha G protein alpha subunit

Probab=99.35  E-value=6.1e-11  Score=97.77  Aligned_cols=119  Identities=20%  Similarity=0.222  Sum_probs=82.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh----------hHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ----------SFDHIPRWLEELRSHA-DKNIVIILIGNKSD  133 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  133 (225)
                      ...+.+||.+|+...+..|..++.+++++|||+|+++.+          .+......+..+.+.. -.+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            356889999999999999999999999999999999732          2333333334433322 25799999999999


Q ss_pred             CCC--------------CC-CCCHHHHHHHHHH-----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          134 LEE--------------QR-AVPTEDAKEFAQK-----------EGLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       134 l~~--------------~~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      +..              .. ..+.+.+..+...           ..+..+.++|.+-.++..+|+.+.+.+++...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            831              00 1233333332211           12346778899999999999998888887643

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=2.8e-11  Score=109.15  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----------------CCcceeeeEEEE--EEECCEEEEEEEEeCCC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS----------------KATIGVEFQTRT--LVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G   75 (225)
                      .++.-+|+|+|+.++|||||+.+|+...-....                ....++......  +...+.+..+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            456778999999999999999999763211000                011111111111  12344578899999999


Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      +..|.......++.+|++|+|+|+...........|... ...   +.|.|+++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc---CCCeEEEEECchhh
Confidence            999988888899999999999999875433333333322 222   56788999999985

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.34  E-value=2e-11  Score=100.93  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=100.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC--------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD--------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      ..-+|.|+.+...|||||+..|+.++-...              -....+++...+..-+.+.+..+.++|||||..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            345899999999999999999987432111              123345666666666677889999999999999999


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHH-------HHcC
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFA-------QKEG  153 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-------~~~~  153 (225)
                      ..+..+.-.|++++++|+.+..--+. +--+   ......+.+.|+|+||+|.++.+... .+++..+.       .+++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch-hhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            99999999999999999987322111 1111   22222366778888999997643211 22333333       3456


Q ss_pred             CeEEEeccCCC
Q 027292          154 LFFLETSALEA  164 (225)
Q Consensus       154 ~~~~~~Sa~~~  164 (225)
                      ++++..|+..|
T Consensus       160 FPivYAS~~~G  170 (603)
T COG1217         160 FPIVYASARNG  170 (603)
T ss_pred             CcEEEeeccCc
Confidence            78888888765

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=2.1e-11  Score=85.75  Aligned_cols=114  Identities=35%  Similarity=0.421  Sum_probs=81.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997776643333 2222                           222334456778999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      |+..+..+++.+  |...+......+.|.++++||.|+.+......+..        ..++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999888765  87777665556788999999999854333332222        234567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.33  E-value=3.8e-11  Score=102.06  Aligned_cols=164  Identities=20%  Similarity=0.354  Sum_probs=114.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGA---   90 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~---   90 (225)
                      ..-.|+|+|..++|||||+.+|.+.+   ...++.+.+|....+..++  ...++.+|...|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999997653   3445666777666655332  335689999988777777666555432   


Q ss_pred             -CEEEEEEeCCChhh-HHhHHHHHHHH-------------------------Hhhc------------------------
Q 027292           91 -VGAMLVYDISRRQS-FDHIPRWLEEL-------------------------RSHA------------------------  119 (225)
Q Consensus        91 -d~~i~v~d~~~~~s-~~~~~~~~~~~-------------------------~~~~------------------------  119 (225)
                       -++|+|.|.+.+-. ++.+..|+..+                         .++.                        
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             47888999998643 44556664322                         1100                        


Q ss_pred             -------------CCCCcEEEEEeCCCCCC----CCC-------CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292          120 -------------DKNIVIILIGNKSDLEE----QRA-------VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       120 -------------~~~~piilv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                                   +.++|++||++|+|...    ...       .....++.+|..+|+.+|.+|++...+++.++.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                         00379999999999732    111       112336778889999999999999999999999988


Q ss_pred             HHHHHHH
Q 027292          176 TEIFNIV  182 (225)
Q Consensus       176 ~~~~~~~  182 (225)
                      +.++...
T Consensus       261 h~l~~~~  267 (472)
T PF05783_consen  261 HRLYGFP  267 (472)
T ss_pred             HHhccCC
Confidence            8876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.8e-11  Score=103.68  Aligned_cols=153  Identities=22%  Similarity=0.235  Sum_probs=106.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--------------------cC---------CCCCCCcceeeeEEEEEEECCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN--------------------EF---------SLDSKATIGVEFQTRTLVIQHKSV   66 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~   66 (225)
                      ..++.+|+|+..+|||||+-+++..                    ..         .....+..|.+......+++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            5789999999999999999998651                    11         112234445666666667777788


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHh---HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDH---IPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .+.|+|.||+..|-.........+|++|+|+|++..   ..|+.   .++ ...+.+..+ -..+||++||+|+.+=.+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeecccccCccHH
Confidence            899999999999998888889999999999999852   23332   122 222333333 4568999999999863333


Q ss_pred             CHHHH----HHHH-HHcC-----CeEEEeccCCCCCHHHH
Q 027292          141 PTEDA----KEFA-QKEG-----LFFLETSALEATNVENA  170 (225)
Q Consensus       141 ~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~v~~~  170 (225)
                      ..+++    ..|. +..|     +.|+++|+..|+|+-..
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            33332    2333 3334     45999999999997643

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=6.6e-12  Score=99.35  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=109.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeE------------------EEEEEEC------CEEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQ------------------TRTLVIQ------HKSVK   67 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~~   67 (225)
                      +..++|.++|+...|||||..+|.+--..   .+-....++...                  ...-.+.      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            67899999999999999999999762110   000000000000                  0000011      12356


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027292           68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDA  145 (225)
Q Consensus        68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~  145 (225)
                      +.|.|.|||+-.-+.......-.|++++|++++.+-.-.+..+-+..+.-..  -..+|++-||+|+......  ..+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8899999999887777777777899999999998544444444444443332  2348899999999753221  23445


Q ss_pred             HHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          146 KEFAQKE---GLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       146 ~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ++|.+-.   +++++++||..+.|++.+++.|.+.+-....
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            5555432   5789999999999999999998887744433

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.32  E-value=2.5e-11  Score=93.49  Aligned_cols=150  Identities=11%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC------------CCCCCcc--eeeeEEEEEEECC------------------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS------------LDSKATI--GVEFQTRTLVIQH------------------   63 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~------------~~~~~~~--~~~~~~~~~~~~~------------------   63 (225)
                      ....|.|+|+.|+|||||+++++.....            .......  ........+ .++                  
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l-~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQI-NTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEE-cCCCcccCChHHHHHHHHHhc
Confidence            5789999999999999999998753110            0000000  000000000 000                  


Q ss_pred             -EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292           64 -KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        64 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  142 (225)
                       ....+.++||.|.-...   ..+....+..+.|+|..+.+...     ......   .+.|.++++||+|+.+......
T Consensus       100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~-----~~~~~~---~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP-----LKYPGM---FKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh-----hhhHhH---HhhCCEEEEEHHHccccchhhH
Confidence             12346666776621000   01111234455667766433211     111111   1467799999999975322223


Q ss_pred             HHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 027292          143 EDAKEFAQKEG--LFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       143 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      +......++.+  ++++++|++++.|++++|+++.+.
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34444444433  789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.31  E-value=2.3e-11  Score=94.44  Aligned_cols=118  Identities=16%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCchh-hh-----hhhHhhhc--CCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           66 VKAQIWDTAGQER-YR-----AVTSAYYR--GAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        66 ~~~~l~Dt~G~~~-~~-----~~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ..+.++||||+-+ |.     +..-..+.  ..-++++|+|..+..+ .-.+...+-...-....+.|.|++.||+|+.+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d  195 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD  195 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence            4588999999543 21     11222222  3457778888765322 22232222222223345899999999999975


Q ss_pred             CC-----CCCHHHHHHHHHH---------------------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          137 QR-----AVPTEDAKEFAQK---------------------EGLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       137 ~~-----~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ..     ..+.+..++...+                     .++..+-+|+.+|.|++++|..+-..+.+...
T Consensus       196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            21     1122222221111                     24568889999999999999988877755544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=5.6e-11  Score=88.35  Aligned_cols=62  Identities=19%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             EEEEeCCCchh----hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           68 AQIWDTAGQER----YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        68 ~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      +.|+||||-..    ...++..+++.+|++|+|.++.+..+......|.+.....   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            88999999543    3456778889999999999999865555555554444433   34488898984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01882 BMS1 Bms1

Probab=99.30  E-value=7.9e-11  Score=91.81  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=82.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ....|+|+|.+|+|||||++.+.............+.    ..+ .......+.++||||..  .. .....+.+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence            4577999999999999999999864221111111111    111 12346678899999854  22 2334678999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCCCCCH---HHHHH-HHHH--cCCeEEEeccCCCCCH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVI-ILIGNKSDLEEQRAVPT---EDAKE-FAQK--EGLFFLETSALEATNV  167 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~~v  167 (225)
                      |+|+........ ..++..+...   +.|. ++|+||+|+.+......   ..+++ +..+  .+.+++.+||+++-.+
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            999986433222 2233333332   5674 55999999864221111   11222 2211  2357999999987544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.28  E-value=2.6e-11  Score=101.83  Aligned_cols=180  Identities=20%  Similarity=0.349  Sum_probs=136.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+|+.|||..++|||+|+++++.+.|.....+.  -..+.+++..++....+.+.|..|..     ...|-..+|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            4689999999999999999999999987777666  34556667777888888899988843     2345667899999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF  171 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ||.+.+..+++.+..+...+..+.. ..+|+++++++.-..  ..+....+..++++.+ ..+.+|++++.+|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            9999999999988776666554443 468888888776442  2344555566665544 45779999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCCCCCCCCC
Q 027292          172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLS  202 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (225)
                      +.+...+...+...........+...+.++.
T Consensus       182 ~~~~~k~i~~~~~qq~~~~~~~s~~~s~~~s  212 (749)
T KOG0705|consen  182 QEVAQKIVQLRKYQQLPASSSKSLPESPSHS  212 (749)
T ss_pred             HHHHHHHHHHHhhhhcccccccccccCCccc
Confidence            9999999988777766665555444444444

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.6e-10  Score=92.51  Aligned_cols=163  Identities=14%  Similarity=0.136  Sum_probs=96.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCCcceeeeEEEEEE-------ECCEEEEEEEEeCCCchhhh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE-------FSLDSKATIGVEFQTRTLV-------IQHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~   80 (225)
                      +..+++.++|+..+|||+|.++|..-.       -+.+..+..+.+.....+.       ..++..++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            445999999999999999999996521       1122222223333332222       23556789999999997655


Q ss_pred             hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CCCHHH-HHHHHHHc-----
Q 027292           81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AVPTED-AKEFAQKE-----  152 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~-~~~~~~~~-----  152 (225)
                      ........-.|..++|+|+......+...-+  .+-+...  ...|+|+||+|...+.  .-..+. ..++.+.+     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            5555555667999999999864333332221  1222222  2256777888874321  111111 22222221     


Q ss_pred             --CCeEEEeccCCC----CCHHHHHHHHHHHHHHH
Q 027292          153 --GLFFLETSALEA----TNVENAFMTVLTEIFNI  181 (225)
Q Consensus       153 --~~~~~~~Sa~~~----~~v~~~f~~l~~~~~~~  181 (225)
                        +.+++++|+..|    +++.++.+.|-.++.+.
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence              368999999999    56666666655555443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.24  E-value=1.8e-10  Score=94.08  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CH
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PT  142 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~  142 (225)
                      ++.+.|+||+|...-...   ....+|.+++|.+....+....+.   ..+.+     ..-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence            467899999996632221   466799999997744444433322   11222     223788999998753211  11


Q ss_pred             HHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          143 EDAKEFAQK-------EGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       143 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      .+.+.....       +..+++.+|++++.|++++++.+.+..-
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            122222221       3357999999999999999998887654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.24  E-value=3.9e-12  Score=99.64  Aligned_cols=111  Identities=16%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             EEEEEeCCCchhhhhhhHhhh--------cCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      .+.++|||||.++...+....        ...-++++++|+....+ ...+..++..+.-....+.|.|.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            589999999988665544433        34568889999876433 333444444443333348999999999999752


Q ss_pred             C-------CCC------------HHHHHHHHH---HcC-C-eEEEeccCCCCCHHHHHHHHHHH
Q 027292          138 R-------AVP------------TEDAKEFAQ---KEG-L-FFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       138 ~-------~~~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      .       ...            ....++++.   ..+ + .++++|+.+++++.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            1       000            000111111   123 3 59999999999999998866543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.4e-10  Score=102.71  Aligned_cols=119  Identities=16%  Similarity=0.195  Sum_probs=89.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEECCE-EEEEEEEeCCCc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQHK-SVKAQIWDTAGQ   76 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~   76 (225)
                      ....-||.|+|+..+|||||..+|+...-...                .....+++.....+...+. .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            56778999999999999999999975211100                0122345555555555566 599999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      -+|.......++..|++|+|+|+...-..+.-..|.+..    ..++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence            999999999999999999999999755544444554443    23799999999999864

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.23  E-value=7.6e-10  Score=91.07  Aligned_cols=83  Identities=16%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEE---------------EEEEEEeCCCchh----
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS---------------VKAQIWDTAGQER----   78 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~----   78 (225)
                      ++|.++|.|++|||||+|+|.+........|.++.+.....+.+....               ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999977544444444444444444433321               2589999999432    


Q ss_pred             ---hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 ---YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 ---~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112233467899999999984

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.23  E-value=7.3e-10  Score=91.46  Aligned_cols=145  Identities=19%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC----cCC------------CCCCCc---ceee--e---EEEEEE-ECCEEEEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN----EFS------------LDSKAT---IGVE--F---QTRTLV-IQHKSVKA   68 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~----~~~------------~~~~~~---~~~~--~---~~~~~~-~~~~~~~~   68 (225)
                      -...+-|.|+|+.++||||||++|.+.    ...            ++..+.   ++++  +   ....+. .++...++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            345688999999999999999999886    222            111111   1111  2   122222 24556789


Q ss_pred             EEEeCCCchh--------hhh-----------------h----hHhhhc-CCCEEEEEE-eCC-----ChhhHHhHHHHH
Q 027292           69 QIWDTAGQER--------YRA-----------------V----TSAYYR-GAVGAMLVY-DIS-----RRQSFDHIPRWL  112 (225)
Q Consensus        69 ~l~Dt~G~~~--------~~~-----------------~----~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~  112 (225)
                      .++||+|-..        -..                 .    ....+. .+|+.|+|. |.+     .....+.-.+|+
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            9999999221        011                 0    223344 899999998 764     111222234566


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292          113 EELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus       113 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      ..+++.   ++|+++++|+.|.....  ..+...++..+++++++.+|+.+
T Consensus       174 ~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       174 EELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             HHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence            666655   89999999999943211  33445566677888877777654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.8e-10  Score=93.86  Aligned_cols=153  Identities=16%  Similarity=0.111  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcC---CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEF---SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +.|+..|+-..|||||+..+.+...   +......++++..  ....+..+..+.|+|.||++++-......+...|.++
T Consensus         1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg--~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al   78 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLG--FYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL   78 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeee--eEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence            3578899999999999999987533   2333344344444  3444445558999999999999988888889999999


Q ss_pred             EEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc---CCeEEEeccCCCCCHH
Q 027292           95 LVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~  168 (225)
                      +|++.++.   ++.+.    +..+ .... ....++|+||+|..+... ..+..++.....   .+++|.+|+++|.|++
T Consensus        79 LvV~~deGl~~qtgEh----L~iL-dllg-i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          79 LVVAADEGLMAQTGEH----LLIL-DLLG-IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             EEEeCccCcchhhHHH----HHHH-HhcC-CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHH
Confidence            99999753   33332    2222 2222 234688999999886331 222233333222   4668999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          169 NAFMTVLTEIF  179 (225)
Q Consensus       169 ~~f~~l~~~~~  179 (225)
                      ++.+.|.+..-
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999999884

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.20  E-value=2.1e-10  Score=91.97  Aligned_cols=114  Identities=16%  Similarity=0.281  Sum_probs=68.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch--------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------   77 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------   77 (225)
                      -.++|+|+|.+|+|||||||.|++.......          ..+..+......+..++..+.+.++||||-.        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999985443331          1222334444445556788899999999911        


Q ss_pred             ----------hhhhhhHh---------hhcCCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           78 ----------RYRAVTSA---------YYRGAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        78 ----------~~~~~~~~---------~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                                +|......         .=...|+++++++.+..  ..++     +..+++... .+++|-|+.|+|..
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-----i~~mk~Ls~-~vNvIPvIaKaD~l  155 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-----IEFMKRLSK-RVNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-----HHHHHHHTT-TSEEEEEESTGGGS
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-----HHHHHHhcc-cccEEeEEeccccc
Confidence                      11111110         11256999999998642  1222     223333333 57899999999974

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.3e-10  Score=88.88  Aligned_cols=143  Identities=19%  Similarity=0.225  Sum_probs=101.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCc----------CC----CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNE----------FS----LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ...-+||..+|+...|||||..++..--          |.    .......+++.....+.++.....+...|+||+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            4457999999999999999998876411          10    112234467777777778788888999999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKE  152 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~  152 (225)
                      -.+......+.|++|+|+++++.   ++.+.    +...++   -+.| +++++||+|+.++++..   ..+++++...+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEH----iLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhh----hhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            88887788899999999999983   33332    111122   2564 78889999998754322   34577788888


Q ss_pred             CCe-----EEEeccCC
Q 027292          153 GLF-----FLETSALE  163 (225)
Q Consensus       153 ~~~-----~~~~Sa~~  163 (225)
                      +++     ++.-|+..
T Consensus       162 ~f~gd~~Pii~gSal~  177 (394)
T COG0050         162 GFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCCcceeechhhh
Confidence            764     56656543

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.17  E-value=6.1e-10  Score=96.76  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=74.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hh--
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AV--   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~--   82 (225)
                      +.+..++|+|+|.+|+||||++|.|++........ ...++.........  .+..+.++||||.....       .+  
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHH
Confidence            45567899999999999999999999976433322 12122222222222  34678999999954321       11  


Q ss_pred             -hHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 027292           83 -TSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN--IVIILIGNKSDLEE  136 (225)
Q Consensus        83 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  136 (225)
                       ...++.  .+|++|+|..++.......-..+++.+...+..+  ..+|||.|..|...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence             122333  5899999998764322112224555555555422  44788889998864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.16  E-value=2.2e-09  Score=87.40  Aligned_cols=120  Identities=23%  Similarity=0.285  Sum_probs=83.9

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-------hHHhHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-------SFDHIPRWLEELRSHAD----KNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~piilv~nK~  132 (225)
                      ....+.++|++|+...+.-|.+.+.+++++|||+++++.+       ...++.+=+..+...++    .+.++||++||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            4477889999999999999999999999999999998632       23344443344444443    479999999999


Q ss_pred             CCCC--------------C-CCCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          133 DLEE--------------Q-RAVPTEDAKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       133 Dl~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      |+-+              . .....+++..+...          ..+....+.|.+-.+|+.+|..+.+.+...-.
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            9831              0 11233333332211          12446667899999999999999988877643

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.15  E-value=3.7e-10  Score=92.98  Aligned_cols=161  Identities=13%  Similarity=0.162  Sum_probs=78.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcce---eeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh-----h
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIG---VEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA-----Y   86 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~   86 (225)
                      ...++|+|.|.+|+|||||||+|.+-.-.......+|   ++.....+.. ..--.+.+||.||..........     -
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999976322221111111   1122222221 12235889999995432222222     3


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCcEEEEEeCCCCC-------CCCCCCHHH----HHHHHHH---
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRW-LEELRSHADKNIVIILIGNKSDLE-------EQRAVPTED----AKEFAQK---  151 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~----~~~~~~~---  151 (225)
                      +...|.+|++.+..    +.....| ...+.+.   +.|+.+|-+|+|..       .++....+.    +++-+.+   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            45679887776633    2222222 3334433   78999999999961       122223222    3333222   


Q ss_pred             -cCC---eEEEeccCCCC--CHHHHHHHHHHHHHHHHh
Q 027292          152 -EGL---FFLETSALEAT--NVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       152 -~~~---~~~~~Sa~~~~--~v~~~f~~l~~~~~~~~~  183 (225)
                       .++   ++|-+|..+-.  ++..+.+.+.+.+-.+..
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence             233   48999988765  466677777766655544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=1e-09  Score=85.76  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             EEEEEEeCCCchh-------------hhhhhHhhhc-CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292           66 VKAQIWDTAGQER-------------YRAVTSAYYR-GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK  131 (225)
Q Consensus        66 ~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  131 (225)
                      ..+.++||||-..             ...+...++. ..+++++|+|+...-.......+.+.+.   ..+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4588999999531             2234556777 4569999998865322212122222222   237899999999


Q ss_pred             CCCCC
Q 027292          132 SDLEE  136 (225)
Q Consensus       132 ~Dl~~  136 (225)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.14  E-value=5.3e-10  Score=83.04  Aligned_cols=150  Identities=13%  Similarity=0.089  Sum_probs=87.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEE-------------EEEEE----------------------
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQT-------------RTLVI----------------------   61 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~----------------------   61 (225)
                      .++|.|.|++|||||+|+.+++..-.........+.+.+.             ..+..                      
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            6899999999999999999987632111110000001000             00000                      


Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCC-CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           62 QHKSVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      ......+.|++..|.-    .......-. +.-|+|+|....+....        +.+...-.-=++|+||.|+...-..
T Consensus        93 ~~~~~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~~P~--------K~gP~i~~aDllVInK~DLa~~v~~  160 (202)
T COG0378          93 DFPDLDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGEDIPR--------KGGPGIFKADLLVINKTDLAPYVGA  160 (202)
T ss_pred             cCCcCCEEEEecCcce----ecccCcchhhceEEEEEECCCCCCCcc--------cCCCceeEeeEEEEehHHhHHHhCc
Confidence            0011345566666611    011111223 37888888886543221        0000001124788899999876666


Q ss_pred             CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          141 PTEDAKEFAQKEG--LFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       141 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +.+.+.+-+++.+  .+++++|.++|+|++++++|+...+
T Consensus       161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            6677776666654  7799999999999999999987654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.10  E-value=8.3e-10  Score=89.73  Aligned_cols=104  Identities=19%  Similarity=0.103  Sum_probs=64.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH-
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE-  143 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-  143 (225)
                      ++.+.|+||+|.....   ......+|.++++......   +.+......+     .+.|.++++||+|+......... 
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678999999954222   2346678888888544322   3332222222     25677999999998753211100 


Q ss_pred             -----HHHHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          144 -----DAKEFAQ---KEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       144 -----~~~~~~~---~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                           ....+..   .+..+++++|++++.|++++++++.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 0011111   13346899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.3e-09  Score=89.75  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=93.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc--C--------------cCCCC----CCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR--N--------------EFSLD----SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~--~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      .-...|+-+|.+|||||-.+|+-  +              ....+    -....|+.......+++..+..+.+.|||||
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            34568899999999999999853  1              00000    0123357777777777788899999999999


Q ss_pred             hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292           77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF  155 (225)
Q Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  155 (225)
                      +.|..-...-+..+|.+|+|+|+...-.... ..+++-.+   ..++||+=++||.|...  ....+.+.+..+.+++.
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR~~--rdP~ELLdEiE~~L~i~  164 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDREG--RDPLELLDEIEEELGIQ  164 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeecccccc--CChHHHHHHHHHHhCcc
Confidence            9999888888999999999999986322221 12222222   24899999999999764  23445566666666543

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=2e-09  Score=82.16  Aligned_cols=155  Identities=14%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CCCcceeeeEEEEEEECCEEEEEEEEeCCCch---------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD---------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE---------   77 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------   77 (225)
                      ..++|+|+|.+|.|||||+|.++.......         ...|+.+......+..++-...+.++||||-.         
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            369999999999999999999987433221         11222222222333345667789999999921         


Q ss_pred             ---------hh--------hhhhHhhhc--CCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 027292           78 ---------RY--------RAVTSAYYR--GAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE-  136 (225)
Q Consensus        78 ---------~~--------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~-  136 (225)
                               +|        ...++..+.  ..|++++.+..+.. ++..+ .++++.+.+.    +-+|-|+-|+|-.- 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence                     11        112223333  35777777776642 22222 2333334333    33666778999632 


Q ss_pred             -CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292          137 -QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                       ++..-.+.+++-...+++.+|+-.+.+-..-+..++.-+
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv  239 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV  239 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence             121122334455566788877776665444444444333

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=8.9e-10  Score=94.72  Aligned_cols=119  Identities=23%  Similarity=0.287  Sum_probs=85.0

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------CCcceeeeEEEEEE---ECCEEEEEEEE
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-----------------KATIGVEFQTRTLV---IQHKSVKAQIW   71 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~l~   71 (225)
                      +..+...+|.++|+-+.|||+|+.-|....-+.-+                 .+..++.....++.   ..+..+-++++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            34567899999999999999999988764322111                 12222222222322   24567789999


Q ss_pred             eCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292           72 DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL  134 (225)
Q Consensus        72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (225)
                      |||||-.|.......++.+|++++|+|+.+.-.+.. .+.   ++..-..+.|+++|+||+|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~---ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERI---IKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHH---HHHHHhccCcEEEEEehhHH
Confidence            999999999888899999999999999997665543 122   22223347999999999996

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.06  E-value=2.5e-09  Score=86.57  Aligned_cols=115  Identities=12%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD----------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------   78 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   78 (225)
                      ..++|+++|+.|.|||||+|.|++......          ..++..+......+..++..+.+.++||||-..       
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            479999999999999999999998633222          224444555555555677788899999999211       


Q ss_pred             -----------hhhh--------hH-hh-hcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           79 -----------YRAV--------TS-AY-YRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        79 -----------~~~~--------~~-~~-~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                                 |+..        +. .+ =..+|++++.+..+.. .+..+ ...+..+..    .+-+|-|+.|+|..
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l  175 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTL  175 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence                       1110        00 01 1246899999887642 11111 122333333    34477888999974

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=6e-10  Score=84.51  Aligned_cols=146  Identities=19%  Similarity=0.290  Sum_probs=86.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-----VTSAYYRGA   90 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~   90 (225)
                      .-||+++|.+|+|||++--.++.+-.... ..++-++++.-....+ -....+.+||..|++.+-.     .....+.+.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999998766654322111 1222223333222211 1346789999999986432     344567899


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCCC--CCHH----HHHHHHHHcCCeEEEecc
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLE---ELRSHADKNIVIILIGNKSDLEEQRA--VPTE----DAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~Sa  161 (225)
                      +++|+|||+...+-...+..+-.   .+.+.. +...+...++|.|+.....  ....    ..+.+.....+.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999987654444444433   333333 3566888889999965221  1111    122233334455777776


Q ss_pred             CCC
Q 027292          162 LEA  164 (225)
Q Consensus       162 ~~~  164 (225)
                      .+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            653

>cd01855 YqeH YqeH

Probab=98.99  E-value=4.8e-09  Score=79.67  Aligned_cols=96  Identities=22%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----H
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----Q  150 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~  150 (225)
                      .+.+..++..++..+|++++|+|+.+...     .|...+.... .+.|+++|+||+|+... ....+....+.     .
T Consensus        21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~   93 (190)
T cd01855          21 EDFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAA   93 (190)
T ss_pred             HHHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHh
Confidence            44467888899999999999999987532     1222222222 36899999999999753 23333344333     2


Q ss_pred             HcCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027292          151 KEGL---FFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ..+.   .++++||+++.|++++++++.+.+
T Consensus        94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          94 GLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3333   589999999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.97  E-value=7.6e-10  Score=88.27  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=39.3

Q ss_pred             CcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKE--GLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ..-++|+||+|+........+...+..+..  .++++++|+++|+|++++++||..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456888999999753222333333334333  4779999999999999999999763

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.97  E-value=1.3e-09  Score=86.64  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSA   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~   85 (225)
                      ....-|.|+|.+++|||||+++|......+...-.-+.+......+. ..+..+.+.||.|.         ..|.++.+ 
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L-psg~~vlltDTvGFisdLP~~LvaAF~ATLe-  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL-PSGNFVLLTDTVGFISDLPIQLVAAFQATLE-  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC-CCCcEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence            34567999999999999999999865443333211122222222222 23446778899993         23444333 


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV----IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      ....+|.++-|.|++++..-++...-+..+.+..-...|    ++=|-||+|...... .       ...++  -+.+|+
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isa  323 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISA  323 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--cccccc
Confidence            367899999999999987666555555555554322223    455677888754211 1       11122  467999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccc
Q 027292          162 LEATNVENAFMTVLTEIFNIVNKKNL  187 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~~~~~~~~  187 (225)
                      .+|.|++++.+.+-..+.....-.+.
T Consensus       324 ltgdgl~el~~a~~~kv~~~t~~~e~  349 (410)
T KOG0410|consen  324 LTGDGLEELLKAEETKVASETTVDED  349 (410)
T ss_pred             ccCccHHHHHHHHHHHhhhhheeeeE
Confidence            99999999998887777666554433

>cd01900 YchF YchF subfamily

Probab=98.95  E-value=7.2e-09  Score=82.62  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh------
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER------   78 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~------   78 (225)
                      |+++|.|+||||||+|+|++........|.++.+.....+.+.+.               ...+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998775554555454555544444332               12589999999432      


Q ss_pred             -hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 -YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 -~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112233467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.8e-08  Score=82.10  Aligned_cols=156  Identities=12%  Similarity=0.225  Sum_probs=90.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD---------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------   78 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------   78 (225)
                      -.++++++|+.|.|||||||.|+...+...         ...+..+......+..++..+.++++||||...        
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            369999999999999999999987644322         122334444444455567788899999999211        


Q ss_pred             ----------hhh-------hhHhhhc--CCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           79 ----------YRA-------VTSAYYR--GAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        79 ----------~~~-------~~~~~~~--~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                                |..       +.+..+.  .+|++++.+.....  ..++  ...+..+..    .+.+|-|+.|+|..-.
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~~----~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLSK----KVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHhc----cccccceeeccccCCH
Confidence                      111       0111122  67899999987642  2222  122233322    5667888899997542


Q ss_pred             CC--CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          138 RA--VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       138 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      .+  .....+.+.....++++|.......   +..+....+.+..
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~  215 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS  215 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence            21  1123344555667777666554443   3344333444433

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=9e-09  Score=83.27  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEE---------------------------
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKS---------------------------   65 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------------   65 (225)
                      .+...-|+++|.-..||||||+.|+.++++.-. .+..+++++....+-+...                           
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            455678999999999999999999999887443 3444466665555422111                           


Q ss_pred             ------------EEEEEEeCCCch-----------hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 027292           66 ------------VKAQIWDTAGQE-----------RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN  122 (225)
Q Consensus        66 ------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  122 (225)
                                  -.+.++||||.-           .|....+-|...+|.+|++||....+--++....+..++.+   .
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence                        238899999932           24556666888999999999987655444444444444443   5


Q ss_pred             CcEEEEEeCCCCCC
Q 027292          123 IVIILIGNKSDLEE  136 (225)
Q Consensus       123 ~piilv~nK~Dl~~  136 (225)
                      -.+-||+||+|..+
T Consensus       212 dkiRVVLNKADqVd  225 (532)
T KOG1954|consen  212 DKIRVVLNKADQVD  225 (532)
T ss_pred             ceeEEEeccccccC
Confidence            56888999999775

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.9e-08  Score=81.98  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC----------------EEEEEEEEeCCCch---
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------------KSVKAQIWDTAGQE---   77 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~~---   77 (225)
                      .+++.|+|-|+||||||+|+++.........|-.+++.......+..                ....+.++|++|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998876655555556665555544211                23468899999821   


Q ss_pred             ----hhhhhhHhhhcCCCEEEEEEeCC
Q 027292           78 ----RYRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        78 ----~~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                          -.......-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                12223344577899999999975

>cd01859 MJ1464 MJ1464

Probab=98.89  E-value=7.5e-09  Score=76.06  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLE  158 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
                      ++.+..+.+..+|++|+|+|+.++..... ..+...+.   ..+.|+++|+||+|+.+...  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            34567778889999999999987543222 12222222   23689999999999854211  11122233445677999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      +||+++.|++++++.+.+.+-
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999998877653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.89  E-value=6.8e-09  Score=85.71  Aligned_cols=91  Identities=19%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             hhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                      +....+.++|.+++|+|+.++. ....+.+|+..+..   .+.|++||+||+|+.....  .+........+++.++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence            3444588999999999998765 44456777776533   3789999999999964211  1223334456788899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTE  177 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~  177 (225)
                      |.++.|++++++.+...
T Consensus       157 A~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        157 VETGIGLEALLEQLRNK  173 (352)
T ss_pred             cCCCCCHHHHhhhhccc
Confidence            99999999999988654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-07  Score=73.29  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAY   86 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~   86 (225)
                      +..-.||+++|.|.+|||||+..+..-.........++.+.-+..+.+++  -.+++.|.||.-.=.       ......
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEE
Confidence            44568999999999999999999987554443333334444444555544  457799999943211       122334


Q ss_pred             hcCCCEEEEEEeCCChhh
Q 027292           87 YRGAVGAMLVYDISRRQS  104 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s  104 (225)
                      .+.+|.+++|.|+...+.
T Consensus       137 ArtaDlilMvLDatk~e~  154 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSED  154 (364)
T ss_pred             eecccEEEEEecCCcchh
Confidence            567899999999987544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.88  E-value=9.5e-09  Score=82.97  Aligned_cols=88  Identities=15%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             HhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292           84 SAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL  162 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (225)
                      ...+.++|++++|+|+.++. ++..+.+|+..+...   +.|+++|+||+|+.+..  ............+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999887 778888888876543   78999999999997531  1122233445578889999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLT  176 (225)
Q Consensus       163 ~~~~v~~~f~~l~~  176 (225)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.84  E-value=3.6e-08  Score=83.12  Aligned_cols=115  Identities=24%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-------hHHhHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-------SFDHIPRWLEELRSHAD----KNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~piilv~nK~  132 (225)
                      ....+.++|++|+...+.-|..++..++++|||+++++.+       ....+.+-+..+...+.    .+.|+||++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4456889999999988999999999999999999987522       22334333333333332    479999999999


Q ss_pred             CCCC-----CC-------------CCCHHHHHHHHHH------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          133 DLEE-----QR-------------AVPTEDAKEFAQK------------EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       133 Dl~~-----~~-------------~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      |+-.     ..             ....+.+..+...            ..+.+..++|.+..++..+|+.+.+.+
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9721     00             1234444444332            122467889999999999999887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.83  E-value=2.6e-08  Score=82.23  Aligned_cols=88  Identities=16%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      ..++|.+++|++.....++..+..|+.....   .++|++||+||+|+.+.... ......+.....+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888889999999876543   36899999999999753210 1122233345678899999999999


Q ss_pred             CHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTE  177 (225)
Q Consensus       166 ~v~~~f~~l~~~  177 (225)
                      |++++++++...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.81  E-value=2.4e-08  Score=79.00  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=86.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCc-----------CCCCCCCcce---------------eeeEEEEEE---------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNE-----------FSLDSKATIG---------------VEFQTRTLV---------   60 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~---------   60 (225)
                      +...|.|-|.||+|||||+..|...-           ..++++.+.|               ...+.....         
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            45789999999999999999885411           1112221111               111111111         


Q ss_pred             ---------ECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292           61 ---------IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK  131 (225)
Q Consensus        61 ---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  131 (225)
                               ++-.++.+.|++|.|--+-.   -....-+|.+++|.-..-.+..+-++.-   +.+..     =++|+||
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEia-----Di~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IMEIA-----DIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hhhhh-----heeeEec
Confidence                     11123668899998844322   2244568988888876655555544332   33332     2678899


Q ss_pred             CCCCCCCCCCHHHHH---HHH------HHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          132 SDLEEQRAVPTEDAK---EFA------QKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       132 ~Dl~~~~~~~~~~~~---~~~------~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      .|...... ...+.+   .+.      ..|..+++.+||.+|+|++++++.+.+-
T Consensus       199 aD~~~A~~-a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h  252 (323)
T COG1703         199 ADRKGAEK-AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH  252 (323)
T ss_pred             cChhhHHH-HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence            99543110 111111   111      1234669999999999999999876554

>PRK00098 GTPase RsgA; Reviewed

Probab=98.80  E-value=2e-08  Score=81.54  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             hhcCCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      ...++|++++|+|+.++..... +.+|+..+..   .+.|+++|+||+|+.+... ...........++.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765444 5778776654   3789999999999963221 122344455667888999999999


Q ss_pred             CCHHHHHHHHHH
Q 027292          165 TNVENAFMTVLT  176 (225)
Q Consensus       165 ~~v~~~f~~l~~  176 (225)
                      .|++++++.+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999987643

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=6.7e-09  Score=85.24  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=110.6

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcC--------cCCCC--------CCCcceeeeEEEEEEECCEEEEEEEEe
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARN--------EFSLD--------SKATIGVEFQTRTLVIQHKSVKAQIWD   72 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D   72 (225)
                      .++......-+|.++.+..+||||--.+++.-        .....        .....+++.+..-+.+++++.++.++|
T Consensus        29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid  108 (753)
T KOG0464|consen   29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID  108 (753)
T ss_pred             CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence            44445566789999999999999999998751        11111        123346788888888999999999999


Q ss_pred             CCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027292           73 TAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE  152 (225)
Q Consensus        73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  152 (225)
                      |||+-.|+-..+..++.-|+++.|||.+-.-..+.+..|.+.    ...++|...++||+|......  ...+.....++
T Consensus       109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl  182 (753)
T KOG0464|consen  109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKL  182 (753)
T ss_pred             CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHh
Confidence            999999999999999999999999999976666667777443    345899999999999854221  22344455556


Q ss_pred             CCe--EEEeccCCCCCHH
Q 027292          153 GLF--FLETSALEATNVE  168 (225)
Q Consensus       153 ~~~--~~~~Sa~~~~~v~  168 (225)
                      +++  ...+-.-+..++.
T Consensus       183 ~ak~l~l~lpi~eak~fn  200 (753)
T KOG0464|consen  183 GAKALKLQLPIGEAKGFN  200 (753)
T ss_pred             CCceEEEEeccccccccc
Confidence            655  2333334444443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.77  E-value=5.1e-08  Score=81.18  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=71.1

Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHH
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK----EFAQ  150 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~  150 (225)
                      .++.|..+...+.+.++++++|+|+.+..     ..|...+.+... +.|+++|+||+|+... ....+.+.    ++++
T Consensus        49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAK  121 (360)
T ss_pred             CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHH
Confidence            36678888888889999999999987643     234455554443 6799999999999753 33334444    3456


Q ss_pred             HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292          151 KEGL---FFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ..++   .++.+||+++.|++++|+.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6676   38999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.76  E-value=8.8e-09  Score=80.22  Aligned_cols=151  Identities=19%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcC-----------CCCCCCc---------------ceeeeEEEEEEECC------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEF-----------SLDSKAT---------------IGVEFQTRTLVIQH------   63 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------   63 (225)
                      +.+.|.|-|+||+|||||++.|...-.           .++++.+               .....+....--.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            568999999999999999999864100           0111100               01122222221111      


Q ss_pred             ------------EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292           64 ------------KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK  131 (225)
Q Consensus        64 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  131 (225)
                                  .++.+.|++|.|--+-.   -....-+|.+++|....-.+..+.++.-+.++   .     =++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---a-----Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---A-----DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---c-----cEEEEeC
Confidence                        12668899998743222   23456789999999988766665543333332   2     2678899


Q ss_pred             CCCCCCCCCCHHHHHHHHH-------HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          132 SDLEEQRAVPTEDAKEFAQ-------KEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       132 ~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +|...... ...+.+....       .|..+++.+||.++.|++++++.|.+.-
T Consensus       177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            99643111 1112222221       1346799999999999999998776643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=4.6e-08  Score=78.42  Aligned_cols=150  Identities=18%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc----------CcCC----CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR----------NEFS----LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ..+-+||.-+|+...|||||-.++..          ..|.    .......+++.....+.++.....+--.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            44568999999999999999888754          1111    011233457777777777777788888999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC---CHHHHHHHHHHcCC--
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV---PTEDAKEFAQKEGL--  154 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~--  154 (225)
                      -........+.|++|+|++++|..--+ .++-+...++. . -..+++++||.|+.++.+.   .+.+++++...+++  
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            888877788899999999999843211 11112222222 2 2348888999999854432   23457788888774  


Q ss_pred             ---eEEEec---cCCCCC
Q 027292          155 ---FFLETS---ALEATN  166 (225)
Q Consensus       155 ---~~~~~S---a~~~~~  166 (225)
                         |++.-|   |.++.+
T Consensus       208 d~~PvI~GSAL~ALeg~~  225 (449)
T KOG0460|consen  208 DNTPVIRGSALCALEGRQ  225 (449)
T ss_pred             CCCCeeecchhhhhcCCC
Confidence               466655   455543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.1e-07  Score=73.02  Aligned_cols=158  Identities=19%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE-----EECCEEEEEEEEeCCCchhhhh---hhHhhhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL-----VIQHKSVKAQIWDTAGQERYRA---VTSAYYR   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~   88 (225)
                      ..+|+++|...+||||+-...++.-.+.+.      -+...+.     .+.+.-+.+.+||.||+-.+-.   -.+..++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT------lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~  100 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET------LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR  100 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCce------eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh
Confidence            477999999999999987766654332221      1111111     1223557799999999765422   2456788


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHHHHH-------HHHHHc-----CC
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTEDAK-------EFAQKE-----GL  154 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~-------~~~~~~-----~~  154 (225)
                      .+.++|||+|+.+. -.+.+.++...+....  +++..+-+.++|.|-..+.. ..+..+       .-....     .+
T Consensus       101 ~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~v  178 (347)
T KOG3887|consen  101 GVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQV  178 (347)
T ss_pred             ccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceE
Confidence            99999999998753 2223333333332222  35777888999999743211 111111       111122     23


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          155 FFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       155 ~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      .|+-+|..+. .+-++|..+++.+.-...
T Consensus       179 sf~LTSIyDH-SIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  179 SFYLTSIYDH-SIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             EEEEeeecch-HHHHHHHHHHHHHhhhch
Confidence            4666776654 478888888887754443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.72  E-value=3.2e-07  Score=74.87  Aligned_cols=158  Identities=15%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC--------------CcceeeeEEEEEEECCE--------------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK--------------ATIGVEFQTRTLVIQHK--------------   64 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--------------   64 (225)
                      ..+..+.|.+.|+...|||||.-.|..+.......              ...+.+.....+-+++.              
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34567899999999999999998877654332211              11122223233322221              


Q ss_pred             -------EEEEEEEeCCCchhhhhhhHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           65 -------SVKAQIWDTAGQERYRAVTSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        65 -------~~~~~l~Dt~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                             +.-+.|.||.|++.|..+...  +-.+.|..++++.+++..+.-.    .+.+--....+.|++++++|+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t----kEHLgi~~a~~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT----KEHLGIALAMELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh----hHhhhhhhhhcCCEEEEEEecccC
Confidence                   134789999999998765444  4457899999999997543211    111111222489999999999996


Q ss_pred             CCCCCC--HHHHH----------------------HHHHHc-C--CeEEEeccCCCCCHHHHHHHH
Q 027292          136 EQRAVP--TEDAK----------------------EFAQKE-G--LFFLETSALEATNVENAFMTV  174 (225)
Q Consensus       136 ~~~~~~--~~~~~----------------------~~~~~~-~--~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      ++....  .+++.                      ..+.+. +  +|+|.+|+.+|+|.+-+.+.+
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            432110  11111                      111112 2  579999999999987655433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.71  E-value=3.9e-08  Score=71.04  Aligned_cols=54  Identities=22%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      +++|+|.+|+|||||+|++.+........ ..+.+.....+..+.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876543222 222333344444433   5789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.69  E-value=2.4e-07  Score=87.82  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=73.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCch--------hhhhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------RYRAV   82 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~   82 (225)
                      .+=.+|+|++|+||||||.+. +..++....      ...+.+..+.+. +   .-...++||+|.-        .....
T Consensus       111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCCcccccHHH
Confidence            355799999999999999977 444433211      111112222222 1   1245589999921        12233


Q ss_pred             hHhhh---------cCCCEEEEEEeCCChh---------hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           83 TSAYY---------RGAVGAMLVYDISRRQ---------SFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        83 ~~~~~---------~~~d~~i~v~d~~~~~---------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      |..++         ...|++|+++|+.+.-         ....++..+.++.+......||.|++||+|+..
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            44443         3579999999987621         123455566777777788999999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.67  E-value=4.5e-08  Score=76.51  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCC---------
Q 027292            6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAG---------   75 (225)
Q Consensus         6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G---------   75 (225)
                      +.....-+.+..++++++|.+++|||+|++-++.......... ..+.+.   .+..-+.+-.+.+.|.||         
T Consensus       125 s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~  201 (320)
T KOG2486|consen  125 SVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFE  201 (320)
T ss_pred             cceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCcc
Confidence            4445556678889999999999999999999987543222211 222222   222223444677889999         


Q ss_pred             -chhhhhhhHhhhcCCC---EEEEEEeCCCh-hhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--C--CHHHH
Q 027292           76 -QERYRAVTSAYYRGAV---GAMLVYDISRR-QSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQRA--V--PTEDA  145 (225)
Q Consensus        76 -~~~~~~~~~~~~~~~d---~~i~v~d~~~~-~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~--~~~~~  145 (225)
                       ...+..+...|+..-+   -+++++|++-+ ...+. ...|+.+      .++|..+|.||+|....-.  -  ....+
T Consensus       202 ~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i  275 (320)
T KOG2486|consen  202 LPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNI  275 (320)
T ss_pred             CcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccc
Confidence             2234444555544332   34445555532 22222 2334332      3899999999999853111  0  01111


Q ss_pred             HH-------HHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292          146 KE-------FAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       146 ~~-------~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ..       .......+++.+|+.++.|.++++-.+.+
T Consensus       276 ~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  276 KINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            11       11122345778999999999988765543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=9e-08  Score=83.75  Aligned_cols=118  Identities=16%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcC------------C--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEF------------S--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      .....-+|+++.+...|||||+..|....-            .  .....+.+++.....+..-..++.+.++|+|||-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            345677899999999999999998876321            1  12234445666666666667888999999999999


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL  134 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (225)
                      |.+......+-+|++++++|+...-..+......+.+.+    +...++|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence            999999999999999999999874433332222222222    4557888999994

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.1e-07  Score=76.90  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE---------------------------------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ---------------------------------------   55 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~---------------------------------------   55 (225)
                      +...||+|.|..++||||++|+++....-++....++..+.                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            35689999999999999999999774443332211110000                                       


Q ss_pred             -----EEEEEECC-E---EEEEEEEeCCCch---hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 027292           56 -----TRTLVIQH-K---SVKAQIWDTAGQE---RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI  123 (225)
Q Consensus        56 -----~~~~~~~~-~---~~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  123 (225)
                           .+.++.++ .   .-.+.++|.||-+   ...+-.-.+...+|++|||.++.+..+... ..++..+   ...+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v---s~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV---SEEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh---hccCC
Confidence                 00001000 0   0136788999943   344445556779999999999987655443 2233332   22234


Q ss_pred             cEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEeccCC
Q 027292          124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--------FFLETSALE  163 (225)
Q Consensus       124 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~  163 (225)
                      .+.++.||.|.....+--.+.+.+-..++++        .+|.+|+++
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            4777778999865322222233332223322        277888664

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.65  E-value=2.1e-06  Score=73.10  Aligned_cols=143  Identities=17%  Similarity=0.229  Sum_probs=88.0

Q ss_pred             CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-C-----------------------------------
Q 027292            5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-A-----------------------------------   48 (225)
Q Consensus         5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~-----------------------------------   48 (225)
                      ++|...=++.++.++|+|||+..+||||.+..+......+... .                                   
T Consensus       296 s~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~D  375 (980)
T KOG0447|consen  296 SDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEED  375 (980)
T ss_pred             hcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhH
Confidence            3444555678899999999999999999999886422111110 0                                   


Q ss_pred             ------------------cceeeeEEEEEEECC-EEEEEEEEeCCCc-------------hhhhhhhHhhhcCCCEEEEE
Q 027292           49 ------------------TIGVEFQTRTLVIQH-KSVKAQIWDTAGQ-------------ERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        49 ------------------~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v   96 (225)
                                        ..+.........+.+ ......+.|.||.             +....+..++..+.+++|+|
T Consensus       376 Lq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILC  455 (980)
T KOG0447|consen  376 LAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILC  455 (980)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEE
Confidence                              001111111111222 2235778899992             23345677889999999999


Q ss_pred             EeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027292           97 YDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ  150 (225)
Q Consensus        97 ~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  150 (225)
                      +---..+ .-..+..+   +.+.-+.+...|+|++|.|+++....++..+++...
T Consensus       456 IQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  456 IQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             eccCCcchhhhhHHHH---HHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            9532211 11122222   223334578899999999999877778888877654

>cd01858 NGP_1 NGP-1

Probab=98.63  E-value=1.1e-07  Score=69.85  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=37.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      .++|+++|.+|+|||||+|+|.+......... .+++.....+...   ..+.++||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~~~---~~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYITLM---KRIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEEcC---CCEEEEECcC
Confidence            57899999999999999999998654333322 2233333333322   2367999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.63  E-value=1.1e-07  Score=71.01  Aligned_cols=56  Identities=25%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      ..++++|+|.+++|||||+|+|.+....... +..+++....++..+   ..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence            3589999999999999999999986553222 222344444444432   2578999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=4e-08  Score=77.74  Aligned_cols=165  Identities=17%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeee--EEEEEE----------------------------
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEF--QTRTLV----------------------------   60 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~--~~~~~~----------------------------   60 (225)
                      ++-+++|.-+|+...||||++.++.+-   .|..+-....++..  .-..+.                            
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            456899999999999999999988651   11111111101100  000000                            


Q ss_pred             --ECC---EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           61 --IQH---KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        61 --~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                        ..+   -...+.|.|+||++..-+.......-.|++++++..+..-...+..+-+..+.-..  =..++++-||+|+.
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli  192 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhh
Confidence              000   11347789999999877766666667799999998886222222222222222211  13478889999997


Q ss_pred             CCCCCC--HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          136 EQRAVP--TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      .+.+..  .+.+++|.+..   +++++++||.-+.+++.+.++|.+.+--
T Consensus       193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            643322  33455565543   5689999999999999999999988743

>cd01856 YlqF YlqF

Probab=98.58  E-value=1.7e-07  Score=69.90  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=40.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      +..++++++|.+|+|||||++++.+..+... ....+++.....+..+   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999998765322 2222344444444443   45789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=4.2e-07  Score=73.96  Aligned_cols=157  Identities=20%  Similarity=0.211  Sum_probs=94.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEE-------EEEE-------
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTR-------TLVI-------   61 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~-------~~~~-------   61 (225)
                      ...-..+|+.|+|...+|||||+-.|..++....                ...+..+.....       .+.+       
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            3344579999999999999999977754332211                111111111111       1111       


Q ss_pred             ---CCEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           62 ---QHKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        62 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                         +...--+.|+|.+|+.+|.......+.  -.|.+++|++++..-.+.. ++-+..+..   .+.|+.++++|+|+.+
T Consensus       242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeecccc
Confidence               111234889999999999877665554  4588999999887543322 111222222   2899999999999965


Q ss_pred             CCC------------------------CCHHHHHHHHHHc----CCeEEEeccCCCCCHHHHHH
Q 027292          137 QRA------------------------VPTEDAKEFAQKE----GLFFLETSALEATNVENAFM  172 (225)
Q Consensus       137 ~~~------------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ...                        -..+++-..+++.    =+++|-+|..+|++++-+..
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            311                        1222233333332    24689999999999876543

>cd01858 NGP_1 NGP-1

Probab=98.53  E-value=3.9e-07  Score=66.99  Aligned_cols=90  Identities=12%  Similarity=0.006  Sum_probs=56.3

Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      .+..+|++++|+|+.++.... ...+...+... ..+.|+++|+||+|+.+... .......+...+....+.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence            467899999999998763211 12222223222 33589999999999964211 1111222222222335789999999


Q ss_pred             CHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEI  178 (225)
Q Consensus       166 ~v~~~f~~l~~~~  178 (225)
                      |++++++.+.+..
T Consensus        82 ~~~~L~~~l~~~~   94 (157)
T cd01858          82 GKGSLIQLLRQFS   94 (157)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999886643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.51  E-value=2.2e-07  Score=70.52  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      .+++++|.+|+|||||+|.|.+.....       ......+++.....+....   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            589999999999999999999754311       1122223445555554433   478999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.51  E-value=4.2e-07  Score=66.73  Aligned_cols=56  Identities=25%  Similarity=0.265  Sum_probs=38.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      ...+++++|.+++|||||++++.+... ....++.+.+.....+..+   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence            457899999999999999999987543 2233343444333222222   2688999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.47  E-value=4.9e-06  Score=64.82  Aligned_cols=88  Identities=16%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCC---CcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSLDSK---ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAV   82 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~   82 (225)
                      ..+..-|.|+|++++|||+|+|.|++.  .+.....   .|.++-.....+. .+....+.++||+|....      ...
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence            345678999999999999999999998  5543332   1111111111111 124578999999995432      112


Q ss_pred             hHhhhc--CCCEEEEEEeCCCh
Q 027292           83 TSAYYR--GAVGAMLVYDISRR  102 (225)
Q Consensus        83 ~~~~~~--~~d~~i~v~d~~~~  102 (225)
                      ....+.  -+|++|+..+....
T Consensus        83 ~~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCccc
Confidence            222333  37888888887653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.46  E-value=9.5e-07  Score=64.82  Aligned_cols=85  Identities=15%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      |++++|+|+.++.+...  .|+.. ......+.|+++|+||+|+..... ..+....+....+..++.+||.++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999987654432  23331 112223789999999999964211 011112232333556899999999999999


Q ss_pred             HHHHHHHHH
Q 027292          171 FMTVLTEIF  179 (225)
Q Consensus       171 f~~l~~~~~  179 (225)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            998877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.46  E-value=8.7e-07  Score=73.25  Aligned_cols=83  Identities=16%  Similarity=0.016  Sum_probs=58.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh---
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER---   78 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   78 (225)
                      +++.|+|.|++|||||++.|..... .....|..+.+.....+.+.+.               ...+.+.|+||.-.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 5444444444555444444332               13578999999432   


Q ss_pred             ----hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 ----YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 ----~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                          ........++.+|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1223444678999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.46  E-value=3.3e-05  Score=56.02  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCC-Cch----------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA-GQE----------------   77 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~----------------   77 (225)
                      ...+||+|-|+||+|||||+.++...--...+. .  --+...++..++...-|.+.|+. |..                
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            457999999999999999999987633222221 1  22344445556677778888876 311                


Q ss_pred             -----hhh----hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027292           78 -----RYR----AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF  148 (225)
Q Consensus        78 -----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  148 (225)
                           .+.    ......+..||++|  +|--.+..+ ....+...+.+....+.|++.++++-+..       -.++++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence                 111    12233345567554  453332221 12455666666666688988888877631       123333


Q ss_pred             HHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          149 AQKEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      -...++.+|    .+.+|-+.+++.++..+
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence            222333343    34445556666665543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.45  E-value=6.3e-07  Score=72.07  Aligned_cols=57  Identities=21%  Similarity=0.339  Sum_probs=39.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      ..++++|+|.+|+|||||+|+|.+........ ..+++.....+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence            46899999999999999999999865433322 223344444444422   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.45  E-value=8.4e-07  Score=71.74  Aligned_cols=59  Identities=22%  Similarity=0.338  Sum_probs=41.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      ...++|+|+|.+|||||||+|+|.+....... ...+++.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            35689999999999999999999987653222 2223444444444332   47899999953

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.43  E-value=5.1e-07  Score=74.01  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      ..++++|+|.|+||||||||+|.+....... +..|++....++..+..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence            3578999999999999999999997663333 22266777777765543   789999994

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=3.3e-06  Score=72.27  Aligned_cols=138  Identities=15%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .++.+-+.|+|++|+||||||+.|...-.... ......++.      ..+....++|+++|.+  ... .....+-+|+
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv------vsgK~RRiTflEcp~D--l~~-miDvaKIaDL  136 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV------VSGKTRRITFLECPSD--LHQ-MIDVAKIADL  136 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE------eecceeEEEEEeChHH--HHH-HHhHHHhhhe
Confidence            34567788999999999999998865311100 111111111      3467788999999942  222 3345667899


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCCHHHHH-----HHHHH-cCCeEEEeccCCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAK-----EFAQK-EGLFFLETSALEA  164 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-----~~~~~-~~~~~~~~Sa~~~  164 (225)
                      +++++|.+-.-.++.+ ++++.+..+   +.| ++-|++..|+........+.-.     .|..- .|+++|.+|-..+
T Consensus       137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            9999999854333322 334544444   455 6778899999764332222211     12221 3678888886643

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.40  E-value=4e-06  Score=65.24  Aligned_cols=120  Identities=20%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh-------hhHHhHHHHHHHHHhhc----CCCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR-------QSFDHIPRWLEELRSHA----DKNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~piilv~nK~  132 (225)
                      ..+.++++|.+|+...+.-|...+....++|||++.+..       .+..++.+-+..++..-    .....+|+++||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            345699999999999898999999999999999998752       12333333232222211    1246799999999


Q ss_pred             CCCC----------------------------CCCCCHH--HHHHHHHH-------------cCCeEEEeccCCCCCHHH
Q 027292          133 DLEE----------------------------QRAVPTE--DAKEFAQK-------------EGLFFLETSALEATNVEN  169 (225)
Q Consensus       133 Dl~~----------------------------~~~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+..                            +...++.  .++.+.+.             .-+.+..+.|.+-+++..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            9731                            0000111  11112111             114466788999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027292          170 AFMTVLTEIFNIVN  183 (225)
Q Consensus       170 ~f~~l~~~~~~~~~  183 (225)
                      +|+...+.+.+.+-
T Consensus       360 VFnDcrdiIqr~hl  373 (379)
T KOG0099|consen  360 VFNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888776654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.40  E-value=3.7e-07  Score=66.84  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      -.++|+|++|||||||+|.|.......      ......-++.....+..+..   ..++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            468999999999999999998853211      11111112222333333222   368999996543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=7.9e-07  Score=76.32  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcC-----CCCC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEF-----SLDS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .+..-+|.+.-+-.+||||+-++++...-     ....           ....+++....-..+.+.++.+.++|||||-
T Consensus        36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV  115 (721)
T ss_pred             hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence            44667899999999999999998865211     0000           1122344444445566778999999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .|.-..+..++.-|++|+|++....-.-+....|.+. ..+   ++|.|.++||+|...
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry---~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY---NVPRICFINKMDRMG  170 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc---CCCeEEEEehhhhcC
Confidence            9998889999999999999998875554555566443 333   899999999999865

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.37  E-value=1.6e-06  Score=62.61  Aligned_cols=76  Identities=22%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             HhhhcCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      ...+..+|++++|+|+.++.+..  .+..|+...   . .+.|+++|+||+|+.++.  ......+.....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence            34678899999999998865533  334444332   2 368999999999986422  122334455556678999999


Q ss_pred             CCCC
Q 027292          162 LEAT  165 (225)
Q Consensus       162 ~~~~  165 (225)
                      .++.
T Consensus        80 ~~~~   83 (141)
T cd01857          80 LKEN   83 (141)
T ss_pred             cCCC
Confidence            8765

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=2.3e-06  Score=79.74  Aligned_cols=163  Identities=21%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-ceeeeEEEEEEEC-CEEEEEEEEeCCCch--------hhhhhhHhh-
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKAT-IGVEFQTRTLVIQ-HKSVKAQIWDTAGQE--------RYRAVTSAY-   86 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~--------~~~~~~~~~-   86 (225)
                      +=.+|+|++|+||||++... +..|+....-. .+.... .+..++ +..-...++||.|..        .-...|..+ 
T Consensus       126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~-gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGP-GTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCC-CCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            34689999999999998754 33332221100 000000 011111 233356789999821        223344433 


Q ss_pred             --------hcCCCEEEEEEeCCChhh---------HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH--HHH
Q 027292           87 --------YRGAVGAMLVYDISRRQS---------FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED--AKE  147 (225)
Q Consensus        87 --------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~  147 (225)
                              .+..|++|+.+|+.+.-+         ...++.-+.++.+......|++|++||.|+......-...  -.+
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~  283 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEE  283 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHH
Confidence                    346799999999876211         1123334566777777789999999999997522110111  112


Q ss_pred             HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          148 FAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ..+-+|+ -|...+....+....++.-.+.+..+.+
T Consensus       284 r~qvwG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~  318 (1188)
T COG3523         284 REQVWGV-TFPLDARRNANLAAELEQEFRLLLDRLN  318 (1188)
T ss_pred             Hhhhcee-ccccccccccchHHHHHHHHHHHHHHHH
Confidence            2222443 3666666664555555444444444433

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.36  E-value=6.3e-07  Score=73.26  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------C--------------CcceeeeEEEEEE-------------EC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDS-------K--------------ATIGVEFQTRTLV-------------IQ   62 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------~--------------~~~~~~~~~~~~~-------------~~   62 (225)
                      .--|+|+|++|+||||++..|...-.....       +              ...+..+......             ..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            457889999999999999988652110000       0              0001111111000             01


Q ss_pred             CEEEEEEEEeCCCchhhhhh----hHhh--------hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292           63 HKSVKAQIWDTAGQERYRAV----TSAY--------YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN  130 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n  130 (225)
                      ...+.+.++||||.......    ...+        -...+..++|+|++...  +.+.. ...+.+..   -+.-+|+|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEE
Confidence            23467999999996432211    1111        12467889999998532  22222 22222221   23457789


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292          131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus       131 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |.|....    .-.+..++...+.|+..++  +|++++++-.
T Consensus       268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            9996532    2334555666799988886  6777776544

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=4.4e-06  Score=69.77  Aligned_cols=95  Identities=20%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF----AQK  151 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~  151 (225)
                      .+.|...........+.+++|+|+.+..     ..|...+.+... +.|+++|+||+|+... ....+.+..+    ++.
T Consensus        56 ~~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         56 DDDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence            3455554444433344899999998743     234445554443 6789999999999752 3333344333    555


Q ss_pred             cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292          152 EGL---FFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       152 ~~~---~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      .++   .++.+||+++.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            565   48999999999999999988653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.35  E-value=3.4e-06  Score=67.56  Aligned_cols=97  Identities=12%  Similarity=0.084  Sum_probs=57.0

Q ss_pred             EEEEEEEEeCCCchhhhhhhH----h---hh-----cCCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292           64 KSVKAQIWDTAGQERYRAVTS----A---YY-----RGAVGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGN  130 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~n  130 (225)
                      .++.+.++||||.........    .   ..     ...|..++|+|+... +.+..    ...+.+..+   +.-+|+|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~----~~~f~~~~~---~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ----AKVFNEAVG---LTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH----HHHHHhhCC---CCEEEEE
Confidence            346789999999654332211    1   11     237999999999743 22322    233332221   3457789


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292          131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus       131 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |.|....    .-.+..+....+.|+..++  +|++++++-..
T Consensus       226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            9997642    2234455556688877776  66667765443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.35  E-value=7e-07  Score=73.32  Aligned_cols=95  Identities=17%  Similarity=0.083  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      +.+.++||+|......    ....+  .-..|.+++|+|+..... .+.+    ..+....  +. --+|+||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~--~~-~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV--GI-DGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC--CC-CEEEEeeecCCCC-
Confidence            5689999999653221    11222  225788999999875432 2222    2222221  22 3567799998642 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292          139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                         .-.+..++...+.|+..++  +|.+++++..+
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence               1234444555788877775  68888776543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.34  E-value=1.3e-06  Score=64.03  Aligned_cols=56  Identities=20%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      ....+++++|.+|+|||||+|.+.+... .....+.  ++.....+...   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence            3468899999999999999999998653 2222233  22222333332   3588999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.34  E-value=1.2e-06  Score=72.55  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   80 (225)
                      ++|+|.+|||||||||+|++........      ...-++.....+.+.+.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            7899999999999999999754322111      11112333333444322   2489999965443

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.33  E-value=1.6e-06  Score=69.70  Aligned_cols=85  Identities=13%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC---------------EEEEEEEEeCCCchh--
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH---------------KSVKAQIWDTAGQER--   78 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~~--   78 (225)
                      +.++|.|||.|++|||||+|.|..........|-.+++.....+.+..               ....+.++|++|--.  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            568999999999999999999999888877777777777766655322               234688999998221  


Q ss_pred             -----hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 -----YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 -----~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                           ........++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence                 2222334567889999988864

>PRK01889 GTPase RsgA; Reviewed

Probab=98.32  E-value=2.4e-06  Score=71.12  Aligned_cols=83  Identities=18%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEAT  165 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  165 (225)
                      ..++|.+++|+++...-....+.+++..+...   +.+.+||+||+|+.+.   ..+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~---~~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCED---AEEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC---HHHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997544555666766666554   6778889999999753   1112222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 027292          166 NVENAFMTVL  175 (225)
Q Consensus       166 ~v~~~f~~l~  175 (225)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888774

>cd01856 YlqF YlqF

Probab=98.31  E-value=3.1e-06  Score=63.13  Aligned_cols=98  Identities=15%  Similarity=0.040  Sum_probs=62.4

Q ss_pred             CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292           73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK  151 (225)
Q Consensus        73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  151 (225)
                      .||+.. .-......+..+|++++|+|+.++...... .+..    .. .+.|+++|+||+|+.+...  .....+..+.
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKK--TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence            355432 233445678899999999999865432221 1222    11 2578999999999964211  1112222233


Q ss_pred             cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          152 EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+..++.+|++++.|++++.+.+...+
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            345689999999999999999888765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.29  E-value=1.5e-05  Score=67.31  Aligned_cols=133  Identities=14%  Similarity=0.037  Sum_probs=69.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc------CcCC---C-CC-----------CCcceeeeEEEEEEEC-------------
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR------NEFS---L-DS-----------KATIGVEFQTRTLVIQ-------------   62 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~------~~~~---~-~~-----------~~~~~~~~~~~~~~~~-------------   62 (225)
                      .--|+++|.+|+||||++..|..      ....   . .+           ....+..+.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            45789999999999999998863      1100   0 00           0001111111000000             


Q ss_pred             CEEEEEEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           63 HKSVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ...+.+.|+||+|.......    ...+  ....|-++||+|+.-.....   .....+.+.   -.+.-+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence            12568899999995433221    1111  22568899999987543221   122333332   124567789999753


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEe
Q 027292          137 QRAVPTEDAKEFAQKEGLFFLET  159 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                      .    .-.+..+....+.|+..+
T Consensus       254 r----gG~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       254 K----GGGALSAVAATKSPIIFI  272 (429)
T ss_pred             C----ccHHhhhHHHHCCCeEEE
Confidence            1    122334444556664444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.27  E-value=5.5e-06  Score=66.63  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292           73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK  151 (225)
Q Consensus        73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  151 (225)
                      .|||-. ........+..+|++++|+|+..+.+...  .++....   . +.|+++|+||+|+.+...  .....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G-NKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C-CCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            366542 22345567889999999999986544322  1111111   2 679999999999964211  1112222233


Q ss_pred             cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          152 EGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      .+..++.+|++++.|+.++.+.+.+.+-+
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45678999999999999999888776644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=1.4e-05  Score=61.95  Aligned_cols=159  Identities=21%  Similarity=0.332  Sum_probs=98.1

Q ss_pred             eeeEEEEcCCCC--CHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           17 VFKVVLIGDSAV--GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        17 ~~~I~vlG~~g~--GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .+-++|+|.+|+  ||-+|+.+|....+.........+.+...++....  .++.+.+.-.. ++.+.. .........+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence            356889999999  99999999999888777666655666555543221  22233332111 222221 1223344578


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---------------------------CCC------
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE---------------------------QRA------  139 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---------------------------~~~------  139 (225)
                      +++|||++....+..+..|+...... ..+ -++.++||.|...                           +..      
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdin-sfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDIN-SFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccc-cch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            99999999999999999997643211 111 2455789988631                           000      


Q ss_pred             -----------CCHHHHHHHHHHcCCeEEEeccCC------------CCCHHHHHHHHHHHHH
Q 027292          140 -----------VPTEDAKEFAQKEGLFFLETSALE------------ATNVENAFMTVLTEIF  179 (225)
Q Consensus       140 -----------~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~f~~l~~~~~  179 (225)
                                 .......+|+.+.++.|++.++.+            ..||..+|..+-..+.
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                       111235678888999999998843            3466676665544443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.26  E-value=7.5e-06  Score=60.28  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+++.|..|+|||||+++++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3679999999999999998764

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.23  E-value=3.5e-06  Score=64.48  Aligned_cols=121  Identities=19%  Similarity=0.237  Sum_probs=79.1

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeC
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNK  131 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK  131 (225)
                      ...+.+.+.|.+|+...+..|.+.+.+.-.++|++.++.          ...++...-++..+..+. -.+.++|+++||
T Consensus       196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence            345567789999988888888888888777777766553          222233333444444332 147899999999


Q ss_pred             CCCCC----------------CCCCCHHHHHHHHHH----cC-----C-eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          132 SDLEE----------------QRAVPTEDAKEFAQK----EG-----L-FFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       132 ~Dl~~----------------~~~~~~~~~~~~~~~----~~-----~-~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      .|+.+                .+..+.+.+++|..+    .+     + .-..+.|.+.+|++-+|..+.+.++++.-
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99843                123344445555433    22     1 13457788889999999999998887644

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.20  E-value=3.3e-06  Score=66.65  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDS------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      .++|+|.+|||||||+|+|.+.......      .....++.....+...+    ..++||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            6899999999999999999875332211      11111223333333322    26999999643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.19  E-value=1.5e-05  Score=62.01  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~   90 (225)
                      .+|.++|.|.+|||||+..+.+-..+......++.......+.  ...-.+++.|.||.-+       -........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~--y~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIR--YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEe--ccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999987544333222211222222222  2445688999999422       111223345678


Q ss_pred             CEEEEEEeCCChhhHHh
Q 027292           91 VGAMLVYDISRRQSFDH  107 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~  107 (225)
                      +.+++|.|+..+-+...
T Consensus       138 nli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             cEEEEEeeccCcccHHH
Confidence            89999999877655444

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.18  E-value=3e-06  Score=67.76  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC------cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           19 KVVLIGDSAVGKSQILARFARN------EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ..+++|++|||||||+|+|...      +.........-++.....+.+++.+   .++||||...+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            5789999999999999999873      2222222222334444444453222   37899996543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.17  E-value=5.5e-05  Score=63.10  Aligned_cols=143  Identities=18%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc-----------------CcCCCCCCCcceeee-------EEEEEEE-CCEEEEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR-----------------NEFSLDSKATIGVEF-------QTRTLVI-QHKSVKAQI   70 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~-----------------~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~l   70 (225)
                      .-+=|.|||+..+||||||.+|..                 .+.+.+....+-.+.       ....+.. ++-.+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            356799999999999999999965                 122222211111111       1112222 466788999


Q ss_pred             EeCCC--------c-----hh------------hhhhhHh----hh--cCCCEEEEEEeCCC----hhhHHhH-HHHHHH
Q 027292           71 WDTAG--------Q-----ER------------YRAVTSA----YY--RGAVGAMLVYDISR----RQSFDHI-PRWLEE  114 (225)
Q Consensus        71 ~Dt~G--------~-----~~------------~~~~~~~----~~--~~~d~~i~v~d~~~----~~s~~~~-~~~~~~  114 (225)
                      +|+.|        +     ++            |....+.    .+  +..=++++.-|.+-    ++.+... .+-..+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99988        0     00            1111110    11  12235666666542    2233222 333444


Q ss_pred             HHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292          115 LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus       115 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      +++.   ++|+++++|-.+...  .-..+...++..+++++++++++.+
T Consensus       176 Lk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  176 LKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence            4444   899999999988543  2234556677888899988887664

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.16  E-value=4.1e-06  Score=69.35  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      ++|+|.+|||||||||.|++........      ...-++.....+......   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            7999999999999999999754322111      111122333333333222   6899999643

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.13  E-value=1.8e-05  Score=64.75  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEE--------------------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTL--------------------   59 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~--------------------   59 (225)
                      ..++|.|+|...+|||||+-.|.+++...                ++..+........-+                    
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            46999999999999999997765533211                111111111111001                    


Q ss_pred             E-ECCEEEEEEEEeCCCchhhhhhhHhh--hcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           60 V-IQHKSVKAQIWDTAGQERYRAVTSAY--YRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        60 ~-~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      . .++..-.+.|+|.+|+++|....-..  -+..|...+++-++-.   .+-+.    +.   -....++|+.+|++|+|
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEH----Lg---LALaL~VPVfvVVTKID  284 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEH----LG---LALALHVPVFVVVTKID  284 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHh----hh---hhhhhcCcEEEEEEeec
Confidence            0 12223458899999999987654332  2356777777766531   11111    11   11123789999999999


Q ss_pred             CCCCCCCCHHHHHH---H--------------------------HHHcCCeEEEeccCCCCCHHHHHH
Q 027292          134 LEEQRAVPTEDAKE---F--------------------------AQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus       134 l~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +-... +..+.+..   +                          ..+.-+++|.+|..+|.++.-+..
T Consensus       285 MCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  285 MCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             cCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence            74311 11111111   1                          112235789999999999876543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=0.00014  Score=62.86  Aligned_cols=157  Identities=14%  Similarity=0.185  Sum_probs=79.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CC--C------------cceeeeEEEEEE-------ECCEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLD---------SK--A------------TIGVEFQTRTLV-------IQHKSV   66 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~--~------------~~~~~~~~~~~~-------~~~~~~   66 (225)
                      --.|+|+|++|+||||++..|...-....         .+  .            ..+..+....-.       .....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            45788999999999999998865211000         00  0            000101100000       011246


Q ss_pred             EEEEEeCCCchhhhhhhHh---hhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSA---YYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP  141 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  141 (225)
                      .+.|+||+|..........   .+.  .....++|++...  +...+...+..+..    ..+.-+|+||.|...    .
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----R  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence            7899999995433221110   010  1234667777663  23333333333332    235668889999753    2


Q ss_pred             HHHHHHHHHHcCCeEEEeccCCCCCH-HHHH----HHHHHHHHHHHhhc
Q 027292          142 TEDAKEFAQKEGLFFLETSALEATNV-ENAF----MTVLTEIFNIVNKK  185 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~f----~~l~~~~~~~~~~~  185 (225)
                      .-.+..+....+.++..++  +|..| +++.    ..+++.+.......
T Consensus       500 lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~  546 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAA  546 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhc
Confidence            3456666677788866664  34444 2222    24555555544433

>PRK13796 GTPase YqeH; Provisional

Probab=98.10  E-value=5.3e-06  Score=69.33  Aligned_cols=57  Identities=19%  Similarity=0.314  Sum_probs=36.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC----CCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL----DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .+++|+|.+|||||||||+|.......    ...+..+++.....+..++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            479999999999999999998643111    11122234444444444322   3699999963

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=6.1e-06  Score=68.65  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CC------------CcceeeeEEEEEE---------EC-CEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLD---------SK------------ATIGVEFQTRTLV---------IQ-HKSV   66 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~------------~~~~~~~~~~~~~---------~~-~~~~   66 (225)
                      -.|+|+|++|+||||++..|...-....         ..            ...+..+....-.         .. ...+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            5799999999999999999864211000         00            0001111100000         00 0135


Q ss_pred             EEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .+.|+||+|.......    ...++  ...|.++||+|++-.  ...+..+...+...   +. --+|+||.|...    
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~i-dglI~TKLDET~----  391 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HI-DGIVFTKFDETA----  391 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---CC-CEEEEEcccCCC----
Confidence            7899999996432211    12222  235778899987632  12233334444332   22 246679999764    


Q ss_pred             CHHHHHHHHHHcCCeEEEec
Q 027292          141 PTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~S  160 (225)
                      ..-.+-.++...+.|+..++
T Consensus       392 k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             CccHHHHHHHHHCcCEEEEe
Confidence            23345666777788866553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.08  E-value=8.5e-06  Score=67.98  Aligned_cols=55  Identities=18%  Similarity=0.355  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcC------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEF------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .+|+|+|.+|||||||+|+|+....      .....|  +++.....+..+.   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCC
Confidence            4899999999999999999987432      122222  3344444443322   35699999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.07  E-value=2.8e-05  Score=62.91  Aligned_cols=101  Identities=19%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292           73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK  151 (225)
Q Consensus        73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  151 (225)
                      .|||.. -.......+..+|++|+|+|+..+.+...  .++....   . +.|+++|+||+|+.+..  ..+...+....
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~--~~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPE--VTKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHH--HHHHHHHHHHH
Confidence            467543 22334556889999999999987544322  1122221   2 68899999999986421  11122222234


Q ss_pred             cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          152 EGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      .+..++.+|+.++.|++++.+.+...+-+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            466789999999999999998887776443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.04  E-value=4.2e-05  Score=57.05  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=45.8

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      ...+.++|++|...+..    ....+.  ...|.+++|+|......   ...+...+.+...   ..-+|.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            35588899999643211    111111  24899999999864332   2233344433322   245677999976421


Q ss_pred             CCCHHHHHHHHHHcCCeEE
Q 027292          139 AVPTEDAKEFAQKEGLFFL  157 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~  157 (225)
                          ..+..++...+.++.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                222336666676643

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=3.1e-05  Score=60.93  Aligned_cols=60  Identities=22%  Similarity=0.452  Sum_probs=43.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----CCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS----KATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      ..++|+-+|.+|.|||||+..|++-.+....    .+..............+..+.+.+.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            4799999999999999999999987664333    23333333333333456677899999998

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=8.6e-05  Score=61.86  Aligned_cols=139  Identities=13%  Similarity=0.089  Sum_probs=71.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeE------------------EEEEE---------ECCEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQ------------------TRTLV---------IQHKSVK   67 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~---------~~~~~~~   67 (225)
                      -.++|+|++|+||||++.+|...-...   ......+.+.+                  ...+.         .......
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            468899999999999999997532111   00000011111                  00000         0112457


Q ss_pred             EEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCC
Q 027292           68 AQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKN--IVIILIGNKSDLEEQR  138 (225)
Q Consensus        68 ~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~  138 (225)
                      +.++||+|...++..    ...+  ....+-.++|++++. .+....+..-+..........  -+--+|+||.|...  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            899999995543222    1111  123345688998875 334443322222221110000  12346679999754  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEec
Q 027292          139 AVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                        ..-.+..+....+.++..++
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEe
Confidence              33446666777788766654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=9.3e-05  Score=62.60  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-----------------------eeeeEEEEEE-------ECCEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-----------------------GVEFQTRTLV-------IQHKSV   66 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~   66 (225)
                      --.|+|+|+.|+||||++..|.+...........                       +.......-.       ..-.+.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            3589999999999999999886531100000000                       0000000000       001224


Q ss_pred             EEEEEeCCCchhhhh----hhHhhh--cCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      .+.++||+|......    ....+.  ...+-.++|+|++. ...+.   .++..+...   + +--+|+||.|...   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~---~-~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH---G-IHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC---C-CCEEEEEeeeCCC---
Confidence            588999999544221    122221  22456788888883 33333   333333221   2 2246679999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292          140 VPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                       ..-.+..+....+.++..++  +|.+|
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence             33446667777788866663  45555

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.01  E-value=0.00027  Score=52.96  Aligned_cols=86  Identities=23%  Similarity=0.309  Sum_probs=59.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE  143 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  143 (225)
                      ..+.+.++|||+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|++|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            4578999999975322  23455688999999998874 3455566666655543   5678899999996531   345


Q ss_pred             HHHHHHHHcCCeEEE
Q 027292          144 DAKEFAQKEGLFFLE  158 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~  158 (225)
                      +++++.+..+++++-
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677778888877543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK13695 putative NTPase; Provisional

Probab=98.00  E-value=0.00035  Score=52.19  Aligned_cols=79  Identities=13%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             hhcCCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           86 YYRGAVGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      .+..+|+  +++|--.. +...  ..+...+......+.|++++.+|...       ......+....+..++++   +.
T Consensus        93 ~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~  158 (174)
T PRK13695         93 ALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TP  158 (174)
T ss_pred             ccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cc
Confidence            3456666  56773111 1111  23344444444457899999998532       133455555667777777   44


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      ++-+++.+.+.+.+
T Consensus       159 ~~r~~~~~~~~~~~  172 (174)
T PRK13695        159 ENRDSLPFEILNRL  172 (174)
T ss_pred             hhhhhHHHHHHHHH
Confidence            45567777666643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.00  E-value=1.5e-05  Score=64.53  Aligned_cols=59  Identities=19%  Similarity=0.226  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      -.++++|++|+|||||+|.|.+........      ....++.....+.....   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            469999999999999999998854332211      11112233333333322   258999997544

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.97  E-value=5.8e-05  Score=60.50  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             HhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292           84 SAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL  162 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (225)
                      ..-..++|-+|+|+++.+++ +...+.+++-.....   ++..++++||+|+.++.....++.......++.+++.+|++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence            33344567777777777754 566667766555443   56667778999998744333345666777889999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEI  178 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~  178 (225)
                      ++.++.++.+++...+
T Consensus       151 ~~~~~~~l~~~l~~~~  166 (301)
T COG1162         151 NGDGLEELAELLAGKI  166 (301)
T ss_pred             CcccHHHHHHHhcCCe
Confidence            9999999988776543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=6.6e-05  Score=63.91  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCCchhhh----hhhHhhhc---CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYR----AVTSAYYR---GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      .+.+.++||+|.....    .....++.   ..+-+++|++++..  ...+...+..+...   + +--+|+||.|... 
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence            3578999999964332    12223333   23466778887642  12222223332211   2 2246789999754 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292          138 RAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                         ..-.+..+....+.++..++  +|.+|
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence               23356777778888876664  34444

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.94  E-value=0.00019  Score=58.83  Aligned_cols=89  Identities=19%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChhhHHh-HHHH-HHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQSFDH-IPRW-LEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ....++++.|...-......+..        ..|++|-|+|+.+...... .... ..++. .  .   =+|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~--A---D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-F--A---DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-h--C---cEEEEecccCC
Confidence            45778899986544333333322        3478999999987433222 2222 22221 1  1   26788999998


Q ss_pred             CCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292          136 EQRAVPTEDAKEFAQKEG--LFFLETSAL  162 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  162 (225)
                      +...  .+..+...++++  ++++.++..
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence            7442  455566666655  568888773

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.94  E-value=8e-06  Score=62.26  Aligned_cols=86  Identities=17%  Similarity=0.057  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      +.+.++||+|...+...    ...++  ...+-+++|.+++....  .+.. .........  . --+|+||.|...   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~~--~-~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAFG--I-DGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHSS--T-CEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhccc--C-ceEEEEeecCCC---
Confidence            56899999995433211    11111  15678999999885432  2222 222223222  1 235679999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEEecc
Q 027292          140 VPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                       ..-.+-.++...+.++-.++.
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEES
T ss_pred             -CcccceeHHHHhCCCeEEEEC
Confidence             234466777788888666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00098 GTPase RsgA; Reviewed

Probab=97.94  E-value=2e-05  Score=64.10  Aligned_cols=56  Identities=23%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc------ceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKAT------IGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .++|+|.+|+|||||+|.|.+..........      ..++.....+..++.   ..++||||..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~  227 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS  227 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence            5889999999999999999875432221111      012222223333222   3689999954

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.90  E-value=8e-05  Score=54.18  Aligned_cols=58  Identities=16%  Similarity=0.090  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      .+.+.++||+|....   ...++..+|-+|+|....-.+.+.- .++  .+...     .-++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~--~~~~~-----~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQA-IKA--GIMEI-----ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHH-hhh--hHhhh-----cCEEEEeCCC
Confidence            467899999996422   2348888999999988773333221 111  12222     2366779987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=2.5e-05  Score=64.35  Aligned_cols=159  Identities=19%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcC-------------------CC----------CCCCcceeeeEEEEEEECC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEF-------------------SL----------DSKATIGVEFQTRTLVIQH   63 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-------------------~~----------~~~~~~~~~~~~~~~~~~~   63 (225)
                      ++..-++++|+|+..+||||+-.++....-                   ..          ......+.+.......+..
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            344568999999999999998776643100                   00          0011112333333334445


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWL--EELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~--~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      ....+.+.|.||+..|-........++|+.++|+++...   ..|+.--+-.  ..+..... ....|+++||+|-+...
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN  233 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence            556799999999999988777778899999999998542   2233221111  12222222 45578888999964321


Q ss_pred             C--CCH----HHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 027292          139 A--VPT----EDAKEFAQKEG------LFFLETSALEATNVENAFM  172 (225)
Q Consensus       139 ~--~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f~  172 (225)
                      .  ...    +.+..+.+.+|      ..|+++|..+|.++.+...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1  111    12333444333      3499999999999887653

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.85  E-value=0.00011  Score=54.61  Aligned_cols=135  Identities=16%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT-AGQ---------------------   76 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------   76 (225)
                      ||++-|.+|+|||||+++++..-... ..+.  .-+....+..++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987632111 1111  1233333334445555555555 221                     


Q ss_pred             -hhhhhh----hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 027292           77 -ERYRAV----TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS-DLEEQRAVPTEDAKEFAQ  150 (225)
Q Consensus        77 -~~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~  150 (225)
                       +.|...    ....+..+|  ++|+|=-.+..+ ....|.+.+......+.|++.++.+. +.        ..++++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             112111    111224555  666774432111 12456666666666688988887776 32        22566777


Q ss_pred             HcCCeEEEeccCCCCCH
Q 027292          151 KEGLFFLETSALEATNV  167 (225)
Q Consensus       151 ~~~~~~~~~Sa~~~~~v  167 (225)
                      ..++.+++++..+...+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            77888998877665543

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.84  E-value=0.00085  Score=55.98  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc---ceeeeEEEEEE---------------------------ECCEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKAT---IGVEFQTRTLV---------------------------IQHKSV   66 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~---------------------------~~~~~~   66 (225)
                      .=.|++||++||||||-+-.|...-........   .+++.+..-..                           ..-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            446899999999999988877653221111111   11111111000                           001235


Q ss_pred             EEEEEeCCCchhhhhh----hHhhhcC--CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAV----TSAYYRG--AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .+.|+||.|...++..    ...++..  ..-+.+|++++..  .+.+...+..+...   +.- =+|+||.|...    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccC----
Confidence            6999999997655433    2333332  2346667777732  23344444443322   222 25569999653    


Q ss_pred             CHHHHHHHHHHcCCeEEEeccCCCCCHHHHH----HHHHHHHHHHH
Q 027292          141 PTEDAKEFAQKEGLFFLETSALEATNVENAF----MTVLTEIFNIV  182 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f----~~l~~~~~~~~  182 (225)
                      ..-.+-.++.+.+.|+-.++.-... .++++    +++++.++...
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~V-PeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRV-PEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCC-CchhhhcChHHHHHHHhccc
Confidence            3444566666677775555332222 22333    35555555443

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.82  E-value=3.5e-05  Score=65.32  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      .+.|.+||.|+|||||+||.|.+.+.- ....|.|.+....++.+..   .+.+.|+||-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            799999999999999999999997642 2233334444444544332   4678999994

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.81  E-value=0.00052  Score=56.31  Aligned_cols=86  Identities=8%  Similarity=0.100  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      ....++++.|......+...++.        ..+++|.|+|+.+......  .+.....+....+   +|++||+|+...
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~--~~~~~~~Qi~~AD---~IvlnK~Dl~~~  165 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--QFTIAQSQVGYAD---RILLTKTDVAGE  165 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc--ccHHHHHHHHhCC---EEEEeccccCCH
Confidence            45678899997655554444322        2478999999986432111  1111112222222   667899999763


Q ss_pred             CCCCHHHHHHHHHHcC--CeEEEec
Q 027292          138 RAVPTEDAKEFAQKEG--LFFLETS  160 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~--~~~~~~S  160 (225)
                          .+.+.+..+..+  ++++.++
T Consensus       166 ----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        166 ----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             ----HHHHHHHHHHhCCCCEEEEec
Confidence                245555555554  5566654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.80  E-value=0.00015  Score=43.14  Aligned_cols=47  Identities=21%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             hhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           86 YYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      .-+-.++++|++|.+.  ..+.+.-..++..++.... +.|+++|.||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            3456789999999997  4566666677788887776 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.80  E-value=4.6e-05  Score=65.48  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC---CcceeeeE------------------EEEEE---------ECCEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSK---ATIGVEFQ------------------TRTLV---------IQHKSVK   67 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~---~~~~~~~~------------------~~~~~---------~~~~~~~   67 (225)
                      --++|+|++|+||||++..|...-......   .-...+.+                  .....         ..-.+..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            358999999999999999987522110000   00000000                  00000         0011235


Q ss_pred             EEEEeCCCchhhhhh---hHhhhcC---CCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           68 AQIWDTAGQERYRAV---TSAYYRG---AVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        68 ~~l~Dt~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      +.++||+|.......   ....+..   .+-.++|+|... ...+.+   ....+..   .+ ..-+|+||.|...    
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~---i~~~f~~---~~-~~g~IlTKlDet~----  405 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE---VVQAYRG---PG-LAGCILTKLDEAA----  405 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH---HHHHhcc---CC-CCEEEEeCCCCcc----
Confidence            789999994432211   1111221   223678888874 323322   2222221   12 3346679999653    


Q ss_pred             CHHHHHHHHHHcCCeEEEeccCCCCCH-HHH
Q 027292          141 PTEDAKEFAQKEGLFFLETSALEATNV-ENA  170 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~  170 (225)
                      ..-.+..+....+.++..+  .+|.+| +++
T Consensus       406 ~~G~~l~i~~~~~lPI~yv--t~GQ~VPeDL  434 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYV--SNGQRVPEDL  434 (484)
T ss_pred             cchHHHHHHHHHCCCeEEE--ecCCCChhhh
Confidence            3345666777788887666  345566 443

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.79  E-value=2.6e-05  Score=58.60  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             EEEEEEeCCCchhhhhh--h---HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAV--T---SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~--~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      ....++++.|......+  .   ....-..+.+|.|+|+.+......+...+..-....  +   ++++||+|+.+.. .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChh-h
Confidence            46778888885443333  0   111235688999999987544444433332222222  2   6678999997632 2


Q ss_pred             CHHHHHHHHHHcC
Q 027292          141 PTEDAKEFAQKEG  153 (225)
Q Consensus       141 ~~~~~~~~~~~~~  153 (225)
                      ..+..++..++.+
T Consensus       159 ~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 KIERVREMIRELN  171 (178)
T ss_dssp             -HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHC
Confidence            2245555555543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=7.5e-05  Score=67.27  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCC--C-CcceeeeEEE----------------EEEE-----------CCEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDS--K-ATIGVEFQTR----------------TLVI-----------QHKSVKA   68 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~--~-~~~~~~~~~~----------------~~~~-----------~~~~~~~   68 (225)
                      -|+|+|+.|+||||.+..|...-.....  . .-.+.+.+..                ....           ...+..+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            5789999999999999998753211100  0 0000000000                0000           0123468


Q ss_pred             EEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292           69 QIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP  141 (225)
Q Consensus        69 ~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  141 (225)
                      .|+||+|......    .....  ....+-.++|+|++. .+.+..+   ...+......+ +-=+|+||.|...    .
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~----~  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT----H  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC----C
Confidence            9999999433211    11111  123456889999874 3333333   22332221101 2246689999764    2


Q ss_pred             HHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292          142 TEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      .-.+-.+....+.++..++  +|.+|
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            3345666777788876663  45555

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00024  Score=59.92  Aligned_cols=134  Identities=20%  Similarity=0.253  Sum_probs=69.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc-CCCC-------CC--------------CcceeeeEEEE-EE-----ECCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE-FSLD-------SK--------------ATIGVEFQTRT-LV-----IQHKSVKAQ   69 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~-~~-----~~~~~~~~~   69 (225)
                      .-|+|+|++||||||++.+|...- ....       .+              ...+....... ..     .....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999987421 0000       00              00011111000 00     011345789


Q ss_pred             EEeCCCchhhh----hhhHhhhc-----CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           70 IWDTAGQERYR----AVTSAYYR-----GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        70 l~Dt~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      ++||+|.....    ..+..++.     ..+-.++|+|++...  +.+...+..+...   +. --+|+||.|-..    
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~---~~-~glIlTKLDEt~----  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL---NY-RRILLTKLDEAD----  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC---CC-CEEEEEcccCCC----
Confidence            99999954221    11222222     234678899988532  1222222222111   22 246679999754    


Q ss_pred             CHHHHHHHHHHcCCeEEEecc
Q 027292          141 PTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      ..-.+-.+....+.|+..++.
T Consensus       374 ~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             CccHHHHHHHHHCCCEEEEec
Confidence            223356666778888666643

>TIGR00959 ffh signal recognition particle protein

Probab=97.75  E-value=0.00046  Score=58.72  Aligned_cols=87  Identities=16%  Similarity=0.056  Sum_probs=49.1

Q ss_pred             EEEEEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      .+.+.++||+|.......    ...+  .-..|.+++|+|+....   ....+...+.....   ..-+|+||.|.... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~-  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDAR-  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCccc-
Confidence            356899999995332211    1111  23578899999987532   33333444433222   23466899996431 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecc
Q 027292          139 AVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                         .-.+.......++|+..+..
T Consensus       255 ---~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 ---GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               12366666777888655543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.75  E-value=4.4e-05  Score=61.02  Aligned_cols=63  Identities=21%  Similarity=0.325  Sum_probs=40.5

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC----CCCCCcceeeeEEEE-EEECCEEEEEEEEeCCCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS----LDSKATIGVEFQTRT-LVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~   76 (225)
                      +.+..++++|+|.||+|||||||.+......    .......|.+..... +.+ .....+.++||||.
T Consensus       139 t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri-~~rp~vy~iDTPGi  206 (335)
T KOG2485|consen  139 TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRI-SHRPPVYLIDTPGI  206 (335)
T ss_pred             ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEe-ccCCceEEecCCCc
Confidence            3567899999999999999999988652221    122222334444444 223 23335889999993

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00041  Score=58.30  Aligned_cols=139  Identities=13%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCC----CC---------------------CCcceeeeEEEEEE-------ECCE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSL----DS---------------------KATIGVEFQTRTLV-------IQHK   64 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~----~~---------------------~~~~~~~~~~~~~~-------~~~~   64 (225)
                      .-.|+++|++|+||||.+..|...-...    ..                     ....+..+......       ....
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            3578999999999999998886421000    00                     00011111110000       0113


Q ss_pred             EEEEEEEeCCCchhhhh----hhHhhhcC---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA----VTSAYYRG---AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      .+.+.++||+|......    ....++..   .+-.++|+|++..  ...+...+......   + +--+|+||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~---~-~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF---S-YKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC---C-CCEEEEEeccCCC-
Confidence            46799999999543221    11222332   2258899998854  22333333333211   1 2346679999654 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292          138 RAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                         ..-.+-.+....+.|+..++  +|.+|
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence               23345566677788866553  45555

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.73  E-value=0.00013  Score=62.15  Aligned_cols=136  Identities=19%  Similarity=0.109  Sum_probs=70.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc----CC------CCCCC-----------cceeeeEEEEEEE-----------C
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE----FS------LDSKA-----------TIGVEFQTRTLVI-----------Q   62 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~----~~------~~~~~-----------~~~~~~~~~~~~~-----------~   62 (225)
                      .....|+++|.+|+||||++..|...-    ..      ..+.+           ..+..+.......           .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            345689999999999999998885410    00      00000           0011111100000           0


Q ss_pred             CEEEEEEEEeCCCchhhhhhh----Hh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           63 HKSVKAQIWDTAGQERYRAVT----SA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      -....+.++||+|........    ..  ..-.+|.+++|+|+....   ........+....  + ..-+|+||.|...
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a  246 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA  246 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC
Confidence            012378999999955432211    11  133678899999987642   2222233333221  1 2356779999653


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEec
Q 027292          137 QRAVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                          ..-.+..+....+.|+..++
T Consensus       247 ----~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 ----KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             ----cccHHHHHHHHHCcCEEEEe
Confidence                12334555566677755553

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=9e-05  Score=62.88  Aligned_cols=118  Identities=16%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC------------cCCCCC--CCcceeeeEEEEEE----------------ECC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN------------EFSLDS--KATIGVEFQTRTLV----------------IQH   63 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~------------~~~~~~--~~~~~~~~~~~~~~----------------~~~   63 (225)
                      ..+.-++.|+.+...|||||-..|.-.            .|....  ....+++....-+.                -++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            445678899999999999999988531            111111  01111222221111                123


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      .++-+.++|.||+-.|.+.....++..|++++|+|..+.--.+.-..+.+.+.+    .+.-++++||.|.+
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHH
Confidence            457799999999999999999999999999999999874433332223344433    23345678999963

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.71  E-value=5.8e-05  Score=60.26  Aligned_cols=134  Identities=18%  Similarity=0.146  Sum_probs=71.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCC---------C------------CCCCcceeeeEEEEEE---------E-CCEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFS---------L------------DSKATIGVEFQTRTLV---------I-QHKS   65 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~---------~-~~~~   65 (225)
                      .-+++|+|++|+||||++..+...-..         .            .+....+..+....-.         . ....
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            368999999999999999887542100         0            0000011111110000         0 1124


Q ss_pred             EEEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      +.+.++||+|.......    +..++  ...|-+++|+|++..  .+.+..++..+...   + +--+|+||.|...   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~---~-~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC---C-CCEEEEEeecCCC---
Confidence            67899999996532111    11222  245678999998632  12333334444322   2 2346679999764   


Q ss_pred             CCHHHHHHHHHHcCCeEEEec
Q 027292          140 VPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~S  160 (225)
                       ..-.+-.++...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             22345566667788866653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.67  E-value=0.0001  Score=62.75  Aligned_cols=87  Identities=16%  Similarity=0.040  Sum_probs=47.9

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      .+.+.|+||+|......    ....+  .-..+.+++|+|+...   +........+.+..  +. .-+|+||.|.... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~i-~giIlTKlD~~~r-  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--GL-TGVILTKLDGDAR-  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence            36789999999543211    11111  1256778999998643   22333334443322  12 3466799996431 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecc
Q 027292          139 AVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                         .-.+.......+.|+..+..
T Consensus       256 ---gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               12255666677887655543

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.66  E-value=0.00041  Score=47.06  Aligned_cols=82  Identities=17%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           20 VVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        20 I~vlG-~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      |.|.| ..|+||||+...+...-.. ...+..-       +..+ ..+.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~-------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL-------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE-------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56777 5589999998877543211 1111111       1111 11678999999864322  3366778999999998


Q ss_pred             CCChhhHHhHHHHHH
Q 027292           99 ISRRQSFDHIPRWLE  113 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~  113 (225)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00029  Score=58.65  Aligned_cols=87  Identities=20%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA----VTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      .+.+.|+||+|......    ....+..  ..|.+++|.++..  ....+...+..+   ...+ +--+|+||.|...  
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---~~l~-i~glI~TKLDET~--  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---AEIP-IDGFIITKMDETT--  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---CcCC-CCEEEEEcccCCC--
Confidence            36789999999643322    1222222  3466777877642  222232323222   1112 2346689999754  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEecc
Q 027292          139 AVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                        ..-.+-.++...+.|+..++.
T Consensus       357 --~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              234466677778888666644

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.60  E-value=0.00027  Score=50.83  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC
Q 027292           21 VLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        21 ~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                      +.-|..|+|||++.-.+...-.. ......-.+...   ....-.+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            45578899999988776542110 011000011000   000111678999999843  333456788999999999986


Q ss_pred             ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292          101 RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus       101 ~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      . .++......++.+.+.. ...++.+|+|+++..
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            3 33433334444444333 245677899999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.0007  Score=44.75  Aligned_cols=69  Identities=19%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-hHhhhcCCCEEEEEEe
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYD   98 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d   98 (225)
                      +++.|..|+|||++...+...-....+      ..    ...+    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~------~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK------RV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC------eE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999988764321111      11    1111    7889999985432221 1445668899999998


Q ss_pred             CCCh
Q 027292           99 ISRR  102 (225)
Q Consensus        99 ~~~~  102 (225)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7643

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.58  E-value=0.00033  Score=54.06  Aligned_cols=75  Identities=31%  Similarity=0.278  Sum_probs=42.6

Q ss_pred             EEEEeC-CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027292           68 AQIWDT-AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK  146 (225)
Q Consensus        68 ~~l~Dt-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  146 (225)
                      +.++|| +|.+.|.   +.....+|.+|+|+|.+. .++....+..+...+. . -.++.+|+||.|-.      .....
T Consensus       136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e~------e~~~~  203 (255)
T COG3640         136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDEE------EELLR  203 (255)
T ss_pred             EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccch------hHHHH
Confidence            556665 4544433   334567899999999874 3333333322222222 1 27899999999943      23344


Q ss_pred             HHHHHcCC
Q 027292          147 EFAQKEGL  154 (225)
Q Consensus       147 ~~~~~~~~  154 (225)
                      ..+...+.
T Consensus       204 ~~~~~~~~  211 (255)
T COG3640         204 ELAEELGL  211 (255)
T ss_pred             hhhhccCC
Confidence            55555554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.54  E-value=0.00087  Score=47.64  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -.++|.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.46  E-value=0.00072  Score=46.21  Aligned_cols=99  Identities=21%  Similarity=0.152  Sum_probs=56.8

Q ss_pred             cCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh
Q 027292           24 GDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ  103 (225)
Q Consensus        24 G~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  103 (225)
                      +..|+|||++...|...-.........-.+..     ... ...+.++|+|+....  .....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence            45679999988777543221101111111111     111 117899999985432  2344677899999998775 44


Q ss_pred             hHHhHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027292          104 SFDHIPRWLEELRSHADK-NIVIILIGNK  131 (225)
Q Consensus       104 s~~~~~~~~~~~~~~~~~-~~piilv~nK  131 (225)
                      +...+..+++.+.+.... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            555566666666655433 3456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.46  E-value=0.0096  Score=43.93  Aligned_cols=142  Identities=10%  Similarity=0.093  Sum_probs=93.6

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +..+...|+++|.-+.++..|...+.....          ++.. .+..      ..-.=.|.  +    ....-...|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l-~Vh~------a~sLPLp~--e----~~~lRprIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDK----------EFKL-KVHL------AKSLPLPS--E----NNNLRPRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhcc----------ceeE-EEEE------eccCCCcc--c----ccCCCceeEE
Confidence            556789999999999999999999986321          1111 1110      00011111  1    1112335799


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ++|++|.....++..+..=+..+....-.++ +.++++-....+...+...++.+++..++++++.+.-....+...+-+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            9999999999888887665555533332233 455556666666577889999999999999999998887766666555


Q ss_pred             HHHHHH
Q 027292          173 TVLTEI  178 (225)
Q Consensus       173 ~l~~~~  178 (225)
                      .|.+.+
T Consensus       147 RLL~~l  152 (176)
T PF11111_consen  147 RLLRML  152 (176)
T ss_pred             HHHHHH
Confidence            555544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.42  E-value=0.00099  Score=46.86  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |++.|++|+|||++++.++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.38  E-value=0.0026  Score=52.75  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      =.+|.|.-|+|||||+++++.
T Consensus         6 v~iltGFLGaGKTTll~~ll~   26 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQ   26 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHh
Confidence            478889999999999999975

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0005  Score=56.68  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcC--------------cCCCC-------CCCcceeeeEEEEEE-----------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARN--------------EFSLD-------SKATIGVEFQTRTLV-----------   60 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------------~~~~~-------~~~~~~~~~~~~~~~-----------   60 (225)
                      .+...--|+++|-.|+||||.+-.|...              .|...       .....++.++.....           
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv  176 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV  176 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence            3445556899999999999988877541              00000       000111222221111           


Q ss_pred             --ECCEEEEEEEEeCCCchhh-hhhhHhh-----hcCCCEEEEEEeCCChhhHHhH
Q 027292           61 --IQHKSVKAQIWDTAGQERY-RAVTSAY-----YRGAVGAMLVYDISRRQSFDHI  108 (225)
Q Consensus        61 --~~~~~~~~~l~Dt~G~~~~-~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~  108 (225)
                        +..+.+.+.|.||+|.-.. .++....     .-..|-+|||.|++-....+..
T Consensus       177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q  232 (483)
T KOG0780|consen  177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ  232 (483)
T ss_pred             HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence              2345678999999994322 1222211     2257999999999976554443

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.36  E-value=0.00016  Score=51.04  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|.|++|+|||++++++...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.33  E-value=0.0002  Score=59.02  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=42.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      ....+++.|+|-|++||||+||.|...... ......|.+....++..   +-.+.|+|.||.
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~L---dk~i~llDsPgi  307 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKL---DKKIRLLDSPGI  307 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheec---cCCceeccCCce
Confidence            457899999999999999999999887652 22333345555555543   335789999994

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.29  E-value=0.004  Score=46.68  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEE--EeCCCchh-hhhhhHhhhcCCCEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI--WDTAGQER-YRAVTSAYYRGAVGAML   95 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~Dt~G~~~-~~~~~~~~~~~~d~~i~   95 (225)
                      .+.|+|+.|+|||||++.+.+-..+....    +       .+++..+.+..  .+.+|.+. .-.+...++...+++++
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~----i-------~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNGDN----D-------EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCCcE----E-------EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            68899999999999999988754322111    1       11121111111  11344333 33455556667765555


Q ss_pred             --EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292           96 --VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN  130 (225)
Q Consensus        96 --v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n  130 (225)
                        -.+.-|..+...+..|+..+...  .+..++++-+
T Consensus        96 DEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH  130 (177)
T cd03222          96 DEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEH  130 (177)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEC
Confidence              11122344555555565555332  1245555533

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.26  E-value=0.0098  Score=44.19  Aligned_cols=84  Identities=15%  Similarity=0.029  Sum_probs=50.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK  146 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  146 (225)
                      .+.++|+|+.....  ....+..+|.+|++++... .+...+..+++.+... . .....+++|+.|....  ...+..+
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~-~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-G-IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-C-CceEEEEEeCCccccc--chhhHHH
Confidence            68999999854332  3445678999999998764 3344444555555442 1 2346788999986532  1222234


Q ss_pred             HHHHHcCCeEE
Q 027292          147 EFAQKEGLFFL  157 (225)
Q Consensus       147 ~~~~~~~~~~~  157 (225)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            55555666643

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00024  Score=53.24  Aligned_cols=23  Identities=22%  Similarity=0.660  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +||+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999875

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.25  E-value=0.0024  Score=51.42  Aligned_cols=106  Identities=20%  Similarity=0.264  Sum_probs=64.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch---------------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE---------------   77 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------------   77 (225)
                      ......+++++|++|-|||+++++|....... ....             ...+.+....+|...               
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            34556889999999999999999998754321 1111             112244555555411               


Q ss_pred             ---------hhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027292           78 ---------RYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHAD-KNIVIILIGNKS  132 (225)
Q Consensus        78 ---------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~piilv~nK~  132 (225)
                               .........++...+=++++|--+-   -+...-...++.++...+ ..+|+|.||++-
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                     1122233456677777888885541   233334555666665554 479999998764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.21  E-value=0.00033  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.19  E-value=0.00032  Score=52.10  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999764

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.18  E-value=0.0035  Score=48.58  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=66.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  142 (225)
                      .+.+.|+|+.|.....  ....+..+|.+|+=+-.+.  .+.......|+..+.+....+.|..|+.|++..... ....
T Consensus        83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHH
Confidence            4678999999854322  3445667999998776663  333333445666666555668999999999874321 1111


Q ss_pred             HHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292          143 EDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ..+.++..  +++++.+...+..-+.++|.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22233332  58889998888877777776

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK07261 topology modulation protein; Provisional

Probab=97.17  E-value=0.00035  Score=52.09  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+|+|+|.+|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998653

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.14  E-value=0.0005  Score=41.89  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..+|.|+.|+|||||+.++..-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.07  E-value=0.00049  Score=49.38  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+++|++|+|||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

...

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.0017  Score=50.71  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcC
Q 027292           20 VVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      |.|+|++|||||||++-+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999987543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.04  E-value=0.0033  Score=44.72  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.04  E-value=0.0012  Score=55.48  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ......|+++|-.|+||||..-.|..
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~  122 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAK  122 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHH
Confidence            45568899999999999998877654

>PRK01889 GTPase RsgA; Reviewed

Probab=97.02  E-value=0.00077  Score=56.22  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+++|+|.+|+|||||++.|.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            379999999999999999998743

>PF05729 NACHT: NACHT domain

Probab=97.00  E-value=0.003  Score=46.16  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ++|.|.+|+|||+++.+++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999998764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.99  E-value=0.013  Score=42.32  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999998754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.93  E-value=0.007  Score=52.94  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+++-|++|+||||.++.|+..
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999988763

>PRK10646 ADP-binding protein; Provisional

Probab=96.92  E-value=0.0076  Score=43.88  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -|++-|+-|+|||||.+.++..-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38899999999999999997743

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.92  E-value=0.00094  Score=41.80  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.92  E-value=0.014  Score=47.19  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAML   95 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~   95 (225)
                      -.|+|.|.+|+||||+++.|....+                          ..+|-.....+..+......  ..+.+.+
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av   60 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV   60 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence            3689999999999999999942211                          11233333333333332222  2356788


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL  134 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (225)
                      ++|+.+..-......++..+...   +.++.+|.-.++.
T Consensus        61 ~iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~~   96 (288)
T PRK05416         61 VIDVRSRPFFDDLPEALDELRER---GIDVRVLFLDASD   96 (288)
T ss_pred             EEccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECCH
Confidence            88887654344455556666554   3444444455553

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0006  Score=57.66  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             EEEEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCC-ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           64 KSVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDIS-RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .++.+.++||+|...-..    ....+  ....|.+++|-.+- .-++.+++..+-..+..+..+..---++++|+|-.+
T Consensus       465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~  544 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD  544 (587)
T ss_pred             cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence            456799999999543221    12222  34779999998654 457888888877777766543333456779999765


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEe
Q 027292          137 QRAVPTEDAKEFAQKEGLFFLET  159 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                      +.   .-.+.......+.|++.+
T Consensus       545 d~---vg~~~~m~y~~~~pi~fv  564 (587)
T KOG0781|consen  545 DK---VGAAVSMVYITGKPILFV  564 (587)
T ss_pred             hH---HHHHhhheeecCCceEEE
Confidence            21   112223333456675554

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.91  E-value=0.00044  Score=61.83  Aligned_cols=69  Identities=13%  Similarity=0.089  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCc-------------hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           66 VKAQIWDTAGQ-------------ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        66 ~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      ..++++|.||.             .....+...++...+.+|+.+...+.+  -....|+...++.-..+...+.|++|.
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence            35778899992             235677888899999999988877521  112345666676666677788888999


Q ss_pred             CCCC
Q 027292          133 DLEE  136 (225)
Q Consensus       133 Dl~~  136 (225)
                      |+.+
T Consensus       210 Dlmd  213 (657)
T KOG0446|consen  210 DFMD  213 (657)
T ss_pred             Hhhh
Confidence            9865

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.90  E-value=0.0049  Score=44.40  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      -|++-|+-|+|||||.+.+...--
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcC
Confidence            478899999999999999987543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.89  E-value=0.0028  Score=44.37  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      --|++-|+-|+|||||.+.++..
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999998764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.88  E-value=0.00096  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999887753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.87  E-value=0.00039  Score=57.45  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG   75 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   75 (225)
                      +...-+-|.|+|.|++||||+||+|-........+    +.-..+..++-.-...+-++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP----IpGETKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP----IPGETKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccC----CCCcchHHHHHHHHhceeEecCCC

>PRK06217 hypothetical protein; Validated

Probab=96.87  E-value=0.001  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+|+|+|.+|+|||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.86  E-value=0.0007  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.607  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.86  E-value=0.01  Score=50.61  Aligned_cols=55  Identities=25%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL  134 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (225)
                      .-......+++++++||= ..+.-=+..++++++..+++....+..+|+|-+|.+.
T Consensus       148 RVEIlKaLyr~a~iLILD-EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E  202 (501)
T COG3845         148 RVEILKALYRGARLLILD-EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE  202 (501)
T ss_pred             HHHHHHHHhcCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence            345566778888866651 1222234556777777777777778999999888763

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.84  E-value=0.0033  Score=46.93  Aligned_cols=44  Identities=25%  Similarity=0.191  Sum_probs=28.6

Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      |++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987533221 22223321 2223689999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.83  E-value=0.0014  Score=50.19  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=27.9

Q ss_pred             CHHHHHHHHHHcCCeEE--EeccCCCCCHHHHHHHHHHHHHHH
Q 027292          141 PTEDAKEFAQKEGLFFL--ETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ..+.++.++.+..+-+|  ++||.+.+-+.++++.+.+.+.+-
T Consensus       144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34445555555555444  489999999999988777766543

>PRK04195 replication factor C large subunit; Provisional

Probab=96.83  E-value=0.029  Score=48.88  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|.|++|+|||++++.++..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999774

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=96.82  E-value=0.0053  Score=49.21  Aligned_cols=121  Identities=20%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC-----------cCCCCCCCc--c-----ee-----------eeEEEEEE----
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN-----------EFSLDSKAT--I-----GV-----------EFQTRTLV----   60 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~-----------~~~~~~~~~--~-----~~-----------~~~~~~~~----   60 (225)
                      ..+.+--++-|.-|+|||||+|.++.+           +|..+..-.  .     +-           -..+-++.    
T Consensus        54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv  133 (391)
T KOG2743|consen   54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV  133 (391)
T ss_pred             CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence            345566778999999999999999763           222211100  0     00           00000110    


Q ss_pred             -------ECCEEEEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChh-hHHhH---HHHHHHHHhhcCC
Q 027292           61 -------IQHKSVKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQ-SFDHI---PRWLEELRSHADK  121 (225)
Q Consensus        61 -------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~-s~~~~---~~~~~~~~~~~~~  121 (225)
                             .....+...+++|.|......+...|+.        .-|++|-|+|+.+.. .++..   ..|-....+..-.
T Consensus       134 raie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A  213 (391)
T KOG2743|consen  134 RAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA  213 (391)
T ss_pred             HHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh
Confidence                   0112356888999996655555444432        348999999987621 11111   1233333343322


Q ss_pred             CCcEEEEEeCCCCCCC
Q 027292          122 NIVIILIGNKSDLEEQ  137 (225)
Q Consensus       122 ~~piilv~nK~Dl~~~  137 (225)
                      +   .+++||.|+...
T Consensus       214 D---~II~NKtDli~~  226 (391)
T KOG2743|consen  214 D---RIIMNKTDLVSE  226 (391)
T ss_pred             h---eeeeccccccCH
Confidence            2   456799999763

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.81  E-value=0.002  Score=52.34  Aligned_cols=145  Identities=15%  Similarity=0.169  Sum_probs=76.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC---------------------CcceeeeEEEE-------EEE----
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK---------------------ATIGVEFQTRT-------LVI----   61 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~---------------------~~~~~~~~~~~-------~~~----   61 (225)
                      ....+-|+|+|-.|+||||-|-.|...-......                     ...+...-...       +.+    
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            3457889999999999999888775410000000                     00011111000       000    


Q ss_pred             --CCEEEEEEEEeCCCchhhhhh-------hHhhhcCC-----CEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEE
Q 027292           62 --QHKSVKAQIWDTAGQERYRAV-------TSAYYRGA-----VGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVII  126 (225)
Q Consensus        62 --~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~-----d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~pii  126 (225)
                        ...++.+.|+||+|.-.....       ....+...     |=++++.|+.-. +.+++.+.+-..+      ++- -
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l~-G  288 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GLD-G  288 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CCc-e
Confidence              123467999999994332211       11122222     337888898864 4555544433332      122 3


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292          127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus       127 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +|+||.|-...-    -.+...+..+++|+..+  --|++++++.
T Consensus       289 iIlTKlDgtAKG----G~il~I~~~l~~PI~fi--GvGE~~~DL~  327 (340)
T COG0552         289 IILTKLDGTAKG----GIILSIAYELGIPIKFI--GVGEGYDDLR  327 (340)
T ss_pred             EEEEecccCCCc----ceeeeHHHHhCCCEEEE--eCCCChhhcc
Confidence            567999964321    22445667788887666  3455555543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.81  E-value=0.0021  Score=48.83  Aligned_cols=70  Identities=20%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             EEEEEeCCCchhhh-------hhhHhhhc--CCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           67 KAQIWDTAGQERYR-------AVTSAYYR--GAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~-------~~~~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .+.++|+||+-+..       .+.++.-.  -.-.+++++|..= .++...+..-+..+.......+|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            47899999964421       11111111  1234666666542 22333333334444333344899999999999854

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.80  E-value=0.0012  Score=47.56  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .|+|+|+.++|||||++.|++.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.79  E-value=0.0013  Score=46.31  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      -.++|+|++|+|||+++..++..-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3689999999999999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03839 putative kinase; Provisional

Probab=96.78  E-value=0.0012  Score=49.47  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +|+|+|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.77  E-value=0.002  Score=49.51  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .....-|+|+|++|+|||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            335566889999999999999999754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.76  E-value=0.0083  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      |+|.|++|+||||+++.++..-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.76  E-value=0.01  Score=43.43  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.75  E-value=0.0017  Score=50.35  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      -|.|+|++|||||||++-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            378999999999999998866443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.74  E-value=0.0014  Score=49.47  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999664

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.72  E-value=0.008  Score=44.87  Aligned_cols=43  Identities=16%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHcCCeEE--EeccCCCCCHHHHHHHHHHHHHHH
Q 027292          139 AVPTEDAKEFAQKEGLFFL--ETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +.....++.++.+..+.+|  ++||.+.+-|.+++..+.+.+.+-
T Consensus       158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            3344455566666555544  489999999999988777666554

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.71  E-value=0.0014  Score=45.88  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

...

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.71  E-value=0.03  Score=41.27  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.0018  Score=53.24  Aligned_cols=23  Identities=48%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcC
Q 027292           20 VVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      ++++|++|||||||++.+.+-+.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999988443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.69  E-value=0.014  Score=42.31  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ++|.|++|+|||+|+..++...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999987643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.68  E-value=0.0016  Score=46.65  Aligned_cols=21  Identities=48%  Similarity=0.729  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14530 adenylate kinase; Provisional

Probab=96.66  E-value=0.0017  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+|+|+|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.65  E-value=0.0017  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+++|++|+|||+|++.++..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.63  E-value=0.0018  Score=50.00  Aligned_cols=70  Identities=13%  Similarity=0.125  Sum_probs=39.8

Q ss_pred             EEEEEEeCCCchhh----hhhhH--hhhcCCCEEEEEEeCCC----hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           66 VKAQIWDTAGQERY----RAVTS--AYYRGAVGAMLVYDISR----RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~----~~~~~--~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ..+.++|+||+-++    .+++.  ..+...|.=+.++.+.|    -+....+..++..+........|-|=|+.|+|+.
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~  176 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL  176 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence            35789999996542    22221  22333454444444333    1222334455555555555678888899999984

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.61  E-value=0.0016  Score=46.85  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....+||+|.|.||+|||||..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            36778999999999999999999974

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.61  E-value=0.0018  Score=48.50  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.61  E-value=0.0019  Score=43.99  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027292           19 KVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~   38 (225)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=96.61  E-value=0.0019  Score=48.79  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|+|++||||||+..+|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999965

>PRK13949 shikimate kinase; Provisional

Probab=96.60  E-value=0.002  Score=47.94  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +|+|+|++|+|||||.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.57  E-value=0.0021  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=96.54  E-value=0.091  Score=41.96  Aligned_cols=81  Identities=20%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCc-EEEEEeCCCCCCCCCCCHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH-ADKNIV-IILIGNKSDLEEQRAVPTE  143 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~~~~~~~  143 (225)
                      +.+.++||+|...... ....+..+|.+|++..... .++..+...+..+... ...+.+ ..+|.|+.|..       .
T Consensus       116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-------~  186 (267)
T cd02032         116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-------D  186 (267)
T ss_pred             CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-------H
Confidence            5688999987532221 2233678999999887753 2333333333333222 123454 34678998842       2


Q ss_pred             HHHHHHHHcCCe
Q 027292          144 DAKEFAQKEGLF  155 (225)
Q Consensus       144 ~~~~~~~~~~~~  155 (225)
                      ..+.+....+.+
T Consensus       187 ~i~~~~~~~~~~  198 (267)
T cd02032         187 LIDKFVEAVGMP  198 (267)
T ss_pred             HHHHHHHhCCCC
Confidence            334455555544

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.53  E-value=0.0022  Score=50.24  Aligned_cols=27  Identities=26%  Similarity=0.530  Sum_probs=23.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....+|++|+|.+|||||+|+..++..
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            345689999999999999999998764

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.034  Score=45.61  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ...-|.++|..|+|||+|++-|.++.
T Consensus       187 df~VIgvlG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  187 DFTVIGVLGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             CeeEEEeecCCCccHHHHHHHHhccC
Confidence            35568899999999999999998764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.53  E-value=0.0024  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|+|++|+|||||++.+++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.52  E-value=0.0025  Score=47.74  Aligned_cols=22  Identities=32%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.+.|+|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03025 replication factor C subunit; Provisional

Probab=96.52  E-value=0.026  Score=46.45  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ..++|.|++|+|||+++..+...-
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987653

>PRK04296 thymidine kinase; Provisional

Probab=96.51  E-value=0.017  Score=43.80  Aligned_cols=21  Identities=29%  Similarity=0.205  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -+++.|++|+||||++..++.
T Consensus         4 i~litG~~GsGKTT~~l~~~~   24 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAY   24 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHH
Confidence            367899999999998887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-68
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-67
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-67
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		9e-67
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-66
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-66
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-66
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-65
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-63
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-62
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-61
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-58
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		9e-49
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-48
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-48
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-47
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-47
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-47
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-47
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-47
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-46
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-46
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-46
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-46
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-46
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-46
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-45
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-45
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-45
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-45
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-44
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-44
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-43
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-43
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-42
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-42
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-40
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-40
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-40
2efc_B	181	Ara7-GdpATVPS9A Length = 181		5e-39
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-38
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		6e-38
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		7e-38
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		7e-38
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-37
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-37
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-37
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-37
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-37
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-37
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-37
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-37
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		6e-37
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-37
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-37
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		7e-37
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-37
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		9e-37
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-36
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-36
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-36
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-36
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-36
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-35
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-35
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		7e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-34
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-34
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-33
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-33
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-33
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-33
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-32
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-32
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-32
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-32
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-31
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-31
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-30
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-30
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-30
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-30
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-30
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-29
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-29
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-29
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		6e-29
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		6e-29
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-29
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-28
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-28
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-28
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-26
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		4e-26
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		9e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		9e-23
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-22
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		8e-22
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-20
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		7e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-20
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-19
1byu_A	216	Canine Gdp-Ran Length = 216		1e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		7e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-15
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-15
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		6e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		9e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-14
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-14
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-14
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		6e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-13
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-13
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-13
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-13
1mh1_A	186	Small G-Protein Length = 186		1e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-12
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-12
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		6e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-12
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		7e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		9e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-11
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-11
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		5e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		4e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		4e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		5e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		6e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		6e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		7e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-09
2kb0_A	178	Cdc42(T35a) Length = 178		2e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-09
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-09
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		5e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-09
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-09
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-09
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-09
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-08
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-08
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-08
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-08
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-08
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-08
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		4e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		6e-08
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		8e-07
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		9e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-06
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-06
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-06
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-06
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-06
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-06
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		6e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		7e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		8e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		8e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		9e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-04
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-04

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  253 bits (646), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 147/172 (85%)
Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
           P    DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQ
Sbjct: 13  PRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 72
Query: 70  IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129
           IWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+G
Sbjct: 73  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 132
Query: 130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
           NKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ I
Sbjct: 133 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 149/176 (84%)
Query: 4   GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
           G   G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
Query: 64  KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
           K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NI
Sbjct: 76  KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           VI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  250 bits (638), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 152/185 (82%), Gaps = 2/185 (1%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYR +TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT--AGEG 192
              RAVPT++A+ FA+K  L F+ETSAL++TNVE AF  +LTEI+ IV++K +   A   
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 193 QGNGN 197
           +  GN
Sbjct: 183 ESPGN 187

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  249 bits (636), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 148/176 (84%)
Query: 4   GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
           G   G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
Query: 64  KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
           K++KAQIWDTAG ERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NI
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           VI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 145/167 (86%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTA
Sbjct: 6   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           G ERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 66  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
              RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ I
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 146/172 (84%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++K
Sbjct: 2   GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
           AQIWDTAG ERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI L
Sbjct: 62  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXL 121
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           +GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  246 bits (627), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 143/165 (86%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           G ERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI L+GNKSDL
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
              RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  244 bits (624), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 152/213 (71%), Gaps = 4/213 (1%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D +FK+VLIGDS VGKS +L+RF +NEF++DSK+TIGVEF TRTL I+ K +KAQIWDTA
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIGNKSDL
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
              RAVPTE++K FAQ+  L F ETSAL + NV+ AF  ++  I+  V+K  +  G+   
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190
Query: 195 NGNPASLS---GKKI-LVPGPAQEIPAKSSMCC 223
           NGN    S   G  I L P P +   A  + CC
Sbjct: 191 NGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 147/175 (84%), Gaps = 1/175 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDT 73
           DY+FK+VLIGDS VGKS +L+RF R+EF+L+SK+TIGVEF T+++ +++ K +KAQIWDT
Sbjct: 5   DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQERYRA+TSAYYRGAVGA+LVYDI+++ SF++I +WL+ELR +AD NIVI+L+GNKSD
Sbjct: 65  AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT 188
           L+  R +   DA ++A+KE L F+ETSALEATNVE AF  +L EI+N+  KK  T
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQAT 179

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 143/178 (80%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G   +  ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VK
Sbjct: 1   GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
           AQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L
Sbjct: 61  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           +GNKSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/175 (61%), Positives = 143/175 (81%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           ++  ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+GN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           KSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 135/170 (79%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK+VLIGDS VGKS +L+RF  +EF+++SK+TIGVEF TRT+ +++K +KAQIWDTA
Sbjct: 8   DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           G ERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIGNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
              RAVPT++AK FA +  + F ETSAL + NV+ AF  ++  IF +V+K
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  189 bits (481), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIGNKSDLE
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIGNK+DLE
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            QR V  E+AK+FA++ GL FLE SA    NVE+AF+    +I+
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 119/169 (70%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R H+  N+VI+LIGNKSDLE
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            +R V  E+ + FA++ GL F+ETSA  A NVE AF+    EI+  + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 117/164 (71%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAG
Sbjct: 29  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           Q R+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIGNK+DLE
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
            QR V  E+AK+FA++ GL FLE SA    NVE+AF+    +I+
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 145/202 (71%), Gaps = 3/202 (1%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL--T 188
           K DL+++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I   ++++NL  T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 189 AGEGQGNGNPASLSGKKILVPG 210
             + +  GN  +L G+ +   G
Sbjct: 182 TQKKEDKGN-VNLKGQSLTNTG 202

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 145/202 (71%), Gaps = 3/202 (1%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL--T 188
           K DL+++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I   ++++NL  T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 189 AGEGQGNGNPASLSGKKILVPG 210
             + +  GN  +L G+ +   G
Sbjct: 182 TQKKEDKGN-VNLKGQSLTNTG 202

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 126/174 (72%)
Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           G     N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K
Sbjct: 4   GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
           ++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 6   GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS 65
           G GDP+++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 66  VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
           VK QIWDTAGQER+R +T +YYR A GA+L YDI++R SF  +P W+E++R +A  NIV 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEI 178
           +LIGNKSDL E R V   +A+  A+  + L  +ETSA +++NVE AF+ V TE+
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 126/174 (72%)
Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           G     N + DY+FK++LIGDS VGK+ +L RFA + ++    +TIGV+F+ RT+ +  K
Sbjct: 4   GSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
           ++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 126/171 (73%), Gaps = 2/171 (1%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G P  + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K
Sbjct: 18  GSP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 75
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L
Sbjct: 76  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 125/168 (74%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +++K+VK QI
Sbjct: 3   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRGA G ++VYD++ R SFD++ +W++E+  +A +N+  +L+GN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           K DL  +R V +++ +E A   G+ F+ETSA  A NVE AF T+  EI
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 124/168 (73%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+G 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           K DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 123/168 (73%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           K DL  ++ V    AKEFA   G+ FLETSA  ATNVE +F T   EI
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 118/173 (68%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK ++IG +  GKS +L +F  N+F  DS  TIGVEF +R + +  K+VK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R+ A  NIV+IL GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
           + +R V   +A  FAQ+  L FLETSAL   NVE AF+     I N ++   L
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 126/164 (76%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QIWDTA
Sbjct: 19  DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GNK DL
Sbjct: 79  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 122/164 (74%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D +FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTA
Sbjct: 4   DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 119/180 (66%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G  ++  D++FK ++IG++  GKS +L +F   +F  DS  TIGVEF ++ + +  K VK
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            QIWDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R  A +NIVIIL
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
            GNK DL+  R V   +A  FAQ+  L FLETSAL   NVE AF+    +I N +    L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 119/160 (74%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           +R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 121/172 (70%)
Query: 14  IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
           +DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ RT+ +  K +K QIWDT
Sbjct: 3   MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQER+R +T+AYYRGA+G MLVYDI+  +SFD+I  W+  +  HA  ++  +++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           + ++R V  E  ++ A   G+ F+ETSA    NVENAF T+  +I   ++KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 116/164 (70%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ RT+ +  K +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA+G MLVYDI+  +SFD+I  W+  +  HA  ++  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            ++R V  E  ++ A   G+ F+ETSA    NVENAF T+  +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 116/170 (68%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           ++  D++FK ++IG++  GKS +L +F   +F  DS  TIGVEF ++ + +  K VK QI
Sbjct: 5   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R  A +NIVIIL GN
Sbjct: 65  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           K DL+  R V   +A  FAQ+  L FLETSAL   +VE AF+    +I N
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 115/170 (67%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           ++  D++FK ++IG++  GKS +L +F   +F  DS  TIGVEF ++ + +  K VK QI
Sbjct: 2   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAG ER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R  A +NIVIIL GN
Sbjct: 62  WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           K DL+  R V   +A  FAQ+  L FLETSAL   +VE AF+    +I N
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  166 bits (420), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS YYRG  G ++VYD++  +SF ++ RWL E+  + D ++  IL+GNK+D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
            E++ V TEDA +FA + G+   ETSA E  NVE  F   +TE+     K NL
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNL 177

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 116/170 (68%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYR +T+AYYRGA+G +L+YDI+ ++SF  +  W  ++++++  N  +IL+GNK DL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
           E++R VP ED +  A   G  F E SA E  NV+  F  ++  I   +N+
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 112/158 (70%)
Query: 14  IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
            DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K VK QIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  +IL+GNK D
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           +EE+R VPTE  +  A++ G  F E SA E  +V  AF
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 110/158 (69%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK+VLIG++ VGK+ ++ RF +  F     ATIGV+F  +T+ I  + VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R++T +YYR A   +L YDI+  +SF  +P WL E+  +A   ++ +L+GNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
            E+R V  + A+EF++ + +++LETSA E+ NVE  F+
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 109/156 (69%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD   GKS ++ RF +++F    ++TIG  F ++TL +   +VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           Y ++   YYRGA  A++V+D++ + SF+   +W++EL++  + N+V+ L GNKSDL + R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            V  EDA+ +AQ+ GLFF+ETSA  ATNV+  F  +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK Q+WDTA
Sbjct: 18  DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA+G +LVYD++  ++F +I +W + +  HA+    ++L+GNKSD+
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
            E R V  +  +  A++ G+ F+E+SA    NV   F T+   I   ++   L    G G
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV---GVG 193
Query: 195 NG 196
           NG
Sbjct: 194 NG 195

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 110/158 (69%)
Query: 14  IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
            DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  ++L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           +E++R V +E  ++ A   G  F E SA +  NV+  F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 105/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 105/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA+G +LVYDI+  ++F +I +W + +  HA+    ++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            E R V  +  +  A++ G+ F+E+SA    NV   F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+   +F     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  A NV   FM +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+S VGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+S VGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+S VGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+S VGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 105/161 (65%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV L+GD+ VGKS I+ RF ++ F  +   TIG  F T+T+   ++  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+ ++   YYRG+  A++VYDI+++ SF  + +W++EL+ H  +NIV+ + GNK DL + 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R VP +DAKE+A+  G   +ETSA  A N+E  F  +  +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+S VGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  + NV   FM +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           ER+R +T+AYYRGA+G +LVYD++  ++F +I +W + +  HA+    ++L+GNKSD+ E
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            R V  +  +  A++ G+ F+E+SA    NV   F T+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 106/157 (67%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+++ +   +VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+ +++F     W++EL+  A  +IVI L GNK+DL  +
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V  E+A+ +A    L F+ETSA  A NV + F+ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA G +LVYDI+  ++F +I +W + +  HA+    ++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            E R V  +  +  A++ G+ F+E+SA    NV   F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D+  +V++IG   VGK+ ++ RF  + F    K+T+GV+F+ +T+ ++ K ++ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+ ++TSAYYR A G +LVYDI+++++FD +P+W++ +  +A ++  ++L+GNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 135 EEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEIFN 180
           E  R +  +  ++FAQ+  G+ F E SA +  NV+  F+ ++ +I  
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+   +F     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  A NV   FM +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TI   F T+T+ +   +VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+   +F     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F+ETSA  A NV   FM +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           RAV  ++A+ +A    L F ETSA  + NV   F  +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA G +LVYD++  ++F +I +W + +  HA+    ++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            E R V  +  +  A++ G+ F+E+SA    NV   F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDT 73
           D  FKV+L+GDS VGK+ +L RF    F   +  +T+G++F+ + L +    VK Q+WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQER+R+VT AYYR A   +L+YD++ + SFD+I  WL E+  +A  ++ ++L+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
              +R V  ED ++ A++ GL F+ETSA    NV+ AF  +  E+
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 106/161 (65%)
Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           +   DY FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QI
Sbjct: 2   SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAG ERYR +T+AYYRGA G +L YDI+  +SF+ +  W  ++++++  N  ++L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           K D E++R V +E  ++ A   G  F E SA +  NV+  F
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 116/172 (67%), Gaps = 4/172 (2%)
Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S G +G+P +K    FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++
Sbjct: 4   SSGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 59
Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
            ++V+ Q+WDTAGQER+R++  +Y R +  A++VYDI+   SF    +W++++R+    +
Sbjct: 60  DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119
Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           ++I+L+GNK+DL ++R V TE+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M++GG +G+P +K    FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ 
Sbjct: 1   MSTGGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 56
Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           ++ ++++ Q+WDTAG ER+R++  +Y R +  A++VYDI+   SF    +W++++R+   
Sbjct: 57  LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            +++I+L+GNK+DL ++R V  E+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M++GG +G+P +K    FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ 
Sbjct: 4   MSTGGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 59
Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           ++ ++V+ Q+WDTAG ER+R++  +Y R +  A++VYDI+   SF    +W++++R+   
Sbjct: 60  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            +++I+L+GNK+DL ++R V  E+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 98/157 (62%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV L+GD+ VGKS I+ RF  + F  +   TIG  F T+T+  Q++  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+RA+   YYRG+  A++VYDI++ ++F  +  W+ ELR H   +IV+ + GNK DL + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V   DAK++A      F+ETSA  A N+   F+ +
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+G++AVGKS I+ RF  N+F+ + + TIG  F T+ + I   +VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD-LEE- 136
           + ++   YYR A  A++VYD+++ QSF     W++EL   A K+I+I L+GNK D L+E 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 137 -QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
            +R V  E+ ++ A+++GL F ETSA    NV + F+ +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+++IG+S VGKS +L RF  + F  +  ATIGV+F+ +T+ +     K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDLEE 136
           R+R +T +YYRGA G +LVYD++RR +F  +  WL EL ++  +N IV  L+GNK D +E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
            R V   +  +FA+K    F+E SA     V+ AF  ++ +   I+    L   E Q +G
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEK---IIQTPGLWESENQNSG 191
Query: 197 NPAS 200
            P+S
Sbjct: 192 -PSS 194

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 97/157 (61%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV L+GD+ VGKS I+ RF  + F  +   TIG  F T+T+  Q++  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+RA+   YYRG+  A++VYDI++ ++F  +  W+ ELR H   +IV+ + GNK DL + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V   DAK++A      F+ETSA  A N+   F+ +
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+VL GD+AVGKS  L R  +NEF  +  AT+GV+FQ +TL++  +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL--- 134
           R+R++  +Y+R A G +L+YD++  +SF +I  W++ +   A + + I+L+GNK+D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 135 ---EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
              E Q+ VP    ++ A   G  F ETSA + +N+  A + +  E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G P +K    FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++ ++++
Sbjct: 1   GSPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR 56
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            Q+WDTAGQER+R++  +Y R +  A++VYDI+   SF    +W++++R+    +++I+L
Sbjct: 57  LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           +GNK+DL ++R V  E+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 114/175 (65%), Gaps = 11/175 (6%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------K 64
           DY+ K + +GDS VGK+ +L ++   +F+     T+G++F+ + +V +           +
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNI 123
            +  Q+WDTAG ER+R++T+A++R A+G +L++D++  QSF ++  W+ +L+ HA  +N 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            I+L GNKSDLE+QRAV  E+A+E A+K G+ + ETSA   TN+ +A   +L  I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 113/175 (64%), Gaps = 11/175 (6%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS--------- 65
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 66  -VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
            V  Q+WDTAGQER+R++T+A++R A+G +L++D++ +QSF ++  W+ +L+++A  +N 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            I+LIGNK+DL +QR V    A+E A K G+ + ETSA    NVE A  T+L  I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 108/157 (68%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++ ++V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++  +Y R +  A++VYDI+   SF    +W++++R+    +++I+L+GNK+DL ++
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R +  E+ ++ A++  + F+ETSA    NV+  F  V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 127/222 (57%), Gaps = 23/222 (10%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNI 123
            V  Q+WDTAG ER+R++T+A++R A+G +L++D++ +QSF ++  W+ +L+++A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
            I+LIGNK+DL +QR V    A+E A+K G+ + ETSA    NVE +  T+L  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 184 K--KNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
           K  +     +    GN   L G+K          PA+    C
Sbjct: 189 KCVEKTQVPDTVNGGNSGKLDGEK----------PAEKKCAC 220

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++ ++V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++  +Y R +  A++VYDI+   SF    +W++++R+    +++I+L+GNK+DL ++
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           R V  E+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G+P +K    FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++ ++V+
Sbjct: 1   GNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 56
Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            Q+WDTAG ER+R++  +Y R +  A++VYDI+   SF    +W++++R+    +++I+L
Sbjct: 57  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           +GNK+DL ++R V  E+ +  A++  + F+ETSA    NV+  F  V
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 104/154 (67%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V +G+ AVGK+ I+ RF  + F  + ++TIG++F ++TL +    V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++  +Y R +  A++VYDI+ RQSF++  +W++++ +   K+++I L+GNK+DL + 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           R V  E+  + AQ+    F ETSA    N++  F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 115/181 (63%), Gaps = 11/181 (6%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
            V  Q+WDTAG ER+R++T+A++R A+G +L++D++ +QSF ++  W+ +L+++A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
            I+LIGNK+DL +QR V    A+E A+K G+ + ETSA    NVE +  T+L  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 184 K 184
           K
Sbjct: 189 K 189

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 96/159 (60%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y FKVVL+G+  VGK+ ++ R+  N+F+     T+G  F T+ L I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+ A+   YYR + GA+LVYDI+   SF  +  W++ELR      I + ++GNK DLE
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           ++R V  ++A+ +A+  G     TSA +   +E  F+ +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 90/115 (78%)
Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           ++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 80  RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 95/159 (59%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y FKVVL+G+  VGK+ ++ R+  N+F+     T+   F T+ L I  K V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+ A+   YYR + GA+LVYDI+   SF  +  W++ELR      I + ++GNK DLE
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           ++R V  ++A+ +A+  G     TSA +   +E  F+ +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 110/175 (62%), Gaps = 11/175 (6%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
            V  Q+WDTAG ER+R++T+A++R A G +L +D++ +QSF ++  W  +L+++A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            I+LIGNK+DL +QR V    A+E A+K G+ + ETSA    NVE +  T+L  I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 95/159 (59%)
Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y FKVVL+G+  VGK+ ++ R+  N+F+     T+   F T+ L I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+ A+   YYR + GA+LVYDI+   SF  +  W++ELR      I + ++GNK DLE
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
           ++R V  ++A+ +A+  G     TSA +   +E  F+ +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 110/175 (62%), Gaps = 11/175 (6%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
            V  Q+WDTAG ER+R++T+A++R A G +L +D++ +QSF ++  W  +L+++A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            I+LIGNK+DL +QR V    A+E A+K G+ + ETSA    NVE +  T+L  I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK+++IGDS VGK+ +  RF    F   ++ATIGV+F+ R + I  + +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 77  ERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDL 134
           ER+R ++   YYR     + VYD++   SF  +P W+EE + H   N I  IL+GNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATN---VENAFMTV 174
                VPT+ A++FA    +   ETSA    +   VE  FMT+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+L+GD  VGKS ++ R+  N+F   +  TIGVEF  R L +  + V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER++++ + +YRGA   +L + +  RQSF+++  W +E   +AD    ++   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNI 181
           D +E R V TE+A+ +  + G + +LETSA + TNV  AF   + ++  +
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK+++IGDS VGK+ +  RF    F   ++ATIGV+F+ R + I  + +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 77  ERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDL 134
           ER+R ++   YYR     + VYD +   SF  +P W+EE + H   N I  IL+GNK DL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATN---VENAFMTV 174
                VPT+ A++FA        ETSA    +   VE  F T+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK++L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD    ++   +++GNK+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
           D++E R V TE+A+ + +  G + + ETSA ++TNV  AF   +  I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FKV+L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD    ++   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           D+ E R V TE+A+ + +  G + + ETSA +ATNV  AF
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER++++  A+YRGA   +LV+D++   +F  +  W +E    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
           DL E R V T+ A+ +   K  + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FKV+L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD    ++   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           D+ E R V TE+A+ + +  G + + ETSA +ATNV  AF
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER++++  A+YRGA   +LV+D++   +F  +  W +E    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
           DL E R V T+ A+ +   K  + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER++++  A+YRGA   +LV+D++   +F  +  W +E    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
           D  E R V T+ A+ +   K  + + ETSA EA NVE AF T+
Sbjct: 128 DF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 102/164 (62%), Gaps = 11/164 (6%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAG 75
           + KV+++GDS VGK+ ++ R+  +++S   KATIG +F T+ + +   K    Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN----IVIILIGNK 131
           QER++++  A+YRGA   +LVYD++   SF++I  W +E   HA+ N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 132 SDLEEQRAVPTE-DAKEFAQKEG---LFFLETSALEATNVENAF 171
            D EE + + +E  A+E A+  G   LF   TSA  A NV+ AF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAF 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
           ER++++  A+YRGA   +LV+D++   +F  +  W +E    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
           DL E R V T+ A+ +   K  + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  R + +  + V+  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           + A+T AYYRGA   +LV+  + R+SF+ I  W E++ +    +I   L+ NK DL +  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
            +  E+A+  A++  L F  TS  E  NV   F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 41/204 (20%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI---------------- 61
           +K VL+G+S+VGKS I+ R  ++ F  ++  TIG  F T  + +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62  --------------QHKS-------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS 100
                         QH +       +K  IWDTAGQERY ++   YYRGA  A++V+DIS
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 101 RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS 160
              + D    W+ +L+     N +IIL+ NK D + +  V   + +++AQ   L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 161 ALEATNVENAFMTVLTEIF-NIVN 183
           A   TN++N F  +  EI+ NI+N
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNIIN 208

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 74
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE++
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 78
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE++
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE++
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKN-IVIILIGNKSDLEE 136
           Y A+   Y+R   G +LV+ I+  +SF     + E+ LR  A+++ I ++++GNKSDLEE
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R VP E+A+  A++ G+ ++ETSA    NV+  F  ++ EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKN-IVIILIGNKSDLEE 136
           Y A+   Y+R   G +LV+ I+  +SF     + E+ LR  A+++ I ++++GNKSDLEE
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R VP E+A+  A++ G+ ++ETSA    NV+  F  ++ EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 64
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE++
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E+AK  A +  + ++ETSA    NV+  F  ++ EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
           Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE++
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           +Y  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     ATIGVE    +       +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++E+
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 131
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +         F +K+ L + + SA    N E  F+
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I  + E+++   D +++ ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V T+ A++ A+  G+ F+ETSA     V++AF T++ EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     ATIGVE    +       +K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++E+
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +         F +K+ L + + SA    N E  F+
Sbjct: 125 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 157

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     ATIGVE    +       +K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++E+
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 123
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +         F +K+ L + + SA    N E  F+
Sbjct: 124 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 156

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 122
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 155

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQ 76
            K+V++GD A GK+ +   FA+  F    K TIG++F  R + +  + +V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRW---LEELRSHADKNIVIILIGNKSD 133
                +   Y  GA G +LVYDI+  QSF+++  W   ++++   ++   ++ L+GNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
           LE  R +  E    F Q+ G      SA    +V   F  V  EI  I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I  + E+++   D +++ ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V T+ A++ A+  G+ F+ETSA     V++AF T++ EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++ +D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF      T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF      T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 131
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    E      AT+GVE            +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L     +NI I+L GNK D++++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
           +      +  F +K+ L + + SA    N E  F+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIG-VEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +K+ LIGD  VGK+  + R     F  +  AT+G V      L  Q   +K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           E+   +   YY GA GA+L +D++ R +  ++ RW++E ++       I++  NK D++ 
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           ++ +  +   E  + +   + E SA  A N    F+  L  IF
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH-LARIF 173

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I  + E+++   D +++ ++L+GNKSDL   R V T+ A++ 
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ F+ETSA     V++AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I  + E+++   D +++ ++L+GNKSDL   R V T+ A++ 
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ F+ETSA     V++AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KVV++G   VGK+ +  +F   EFS     T+   + ++ + +        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQ 137
           Y  +  ++  G  G +LVY ++   SF  I    ++L   H    + ++L+GNK+DL  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
           R V   + K+ A+  G  F+E+SA E    +  F  V+ EI  + N
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 7/191 (3%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI     +  L         
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI----RQHKLRKLNPPDES 177
Query: 197 NPASLSGKKIL 207
            P  +S K +L
Sbjct: 178 GPGCMSCKCVL 188

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNKSDL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF  I  + E+++   D + V ++L+GNK DL   R V T+ A E 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ F+ETSA     VE+AF T++ EI
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KVVL+GD   GK+ +L  FA   F      T+   +    L ++ K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +   +Y  A   +L +D++   SFD+I  RW  E+ +H  K + II++G K+DL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 138 RA------------VPTEDAKEFAQKEG-LFFLETSALEATNVENAF 171
           ++            V     +E A+  G + +LE SA    NV   F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F ++ F  D   TI   + T+  VI  ++ +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDLEEQRAVPTEDAKEF 148
             G +LV+ ++ R SF+ I ++  ++    D++   +ILIGNK+DL+ QR V  E+ ++ 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 149 AQKEGLFFLETSALEATNVENAF 171
           A++  + ++E SA    NV+ AF
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF 159

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Query: 4   GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
           GGG G    +    +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  
Sbjct: 1   GGGSGGSMTE----YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDG 55
Query: 64  KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
           ++    I DTAGQE Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + 
Sbjct: 56  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 115
Query: 124 V-IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           V ++L+GNK DL   R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 116 VPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V +GD AVGK+ +L  +  N F  D   T+   F +  +V+   +V   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +    YRGA   +L + +  + S++++  +W+ ELR +A   + IIL+G K DL + 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
Query: 138 R--------AVP--TEDAKEFAQKEG-LFFLETSALEATNVENAF 171
           +        AVP  T   +E  +  G   ++E S+    NV+  F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V +GD AVGK+ +L  +  N F  D   T+   F    +V+   +V   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +    YRGA   +L + +  + S+++I  +WL EL+ +A   I I+L+G K DL + 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDD 125
Query: 138 R----------AVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVL 175
           +          ++ T   +E  +  G + +LE S+    NV+  F T +
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I  + E+++   D +++ ++L+GNK DL   R V T+ A++ 
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ F+ETSA     V++AF T++ EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F  +   TI   ++ + + +  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E+ LR    +++ +IL+GNK DLE+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A Q     FLE+SA    NV   F  ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F ++ F  D   TI   + T+   +     +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G +LV+ I+ RQSF+ + +   + LR     +  ++L+GNK+DLE QR VP  +A  F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 149 AQKEGLFFLETSALEATNVENAF 171
                + + E SA    NV+ AF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 19  KVVLIGDSAVGKSQILARFAR--NEFSLDSKATIGVEFQTRTLVIQHKSVKAQIW--DTA 74
           KV ++G++ VGKS +++ F    ++F  D   T GVE     + I   +V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS---HADKNIVIILIGNK 131
           G + Y+   S Y+ G   A+LV+D+S  +SF+    W E L+S     ++ +  +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 132 SDLEEQR-AVPTEDAKEFAQKEGLFFLETSA-LEATNVENAFMTVLTEIF 179
           +DL  QR  V  + A+++A    L F + SA     + +  F+++ T  +
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI   ++ + + +  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E+ LR     ++ +IL+GNK DLE+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A Q     FLE+SA    NV   F  ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI   ++ + + +  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E+ LR    +++ +IL+GNK DLE+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A Q     FLE+SA    NV   F  ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   +I   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F      TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F      TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI   ++ + + +  +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E+ LR     ++ +IL+GNK DLE+
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A Q     FLE+SA    NV   F  ++ +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GN+ DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGK+ +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   +I   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG+E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V +GD AVGK+ +L  +  N F  D   T+   F +  +V+   +V   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +    YRGA   +L + +  + S++++  +W+ EL+ +A   + I+L+G K DL + 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127
Query: 138 R--------AVP--TEDAKEFAQKEGL-FFLETSALEATNVENAF 171
           +        AVP  T   +E  +  G   ++E S+    NV+  F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ E 
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V +GD AVGK+ +L  +  N+F  D   T+   F    + +  + V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    YRGA   +L + +  + S++++  +W+ ELR  A  N+ I+L+G K DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 137 QRAVPTEDAKEFAQKEG---------LFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
            +    +        +G           ++E S+    NV+  F T +  +     +K +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 178
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 179 AALQARRGK 187

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 179
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 180 AALQARRGK 188

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 177 AALQARRGK 185

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 178
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 179 AALQARRGK 187

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           G + DPNQ +    K+V++GDS  GK+ +L  FA++ F  +   T+  E  T +  I  +
Sbjct: 18  GSHMDPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQ 74
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNI 123
            ++  +WDT+G   Y  V    Y  +   ++ +DISR ++ D +  +W  E++     N 
Sbjct: 75  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNT 133
Query: 124 VIILIGNKSDL------------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
            ++L+G KSDL              Q  V  +     A++ G   ++E SAL++ N
Sbjct: 134 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ + G + VGKS ++ RF    F  +   T+   ++ +   I  + V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI---PRWLEELRSHADKNIVIILIGNKSDLE 135
                  + R   G +LVYDI+ R SF+ +      L+E++    KN+ +IL+GNK+DL+
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTVLTEI 178
             R V TE+ ++ A +    F E SA     N+   F  +  E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
             G + V+ I+  +SF+ I ++ E+++   D + V ++L+GNK DL   R V +  A++ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL + 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                      Q  V +E+ ++ A +   F +LE SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL + 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                      Q  V +E+ ++ A +   F +LE SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K VL+GD AVGK+ ++  +  N +  +   T    F +  + +  + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           +  +    Y      +L + +    SF ++  +W+ E+R H  K   IIL+G +SDL E 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      ++ VP E AK  A++ +   ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y       Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V   + ++ A + G F ++E SA     V   F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G  +VGKS +  +F   +F      TI   F T+ + +  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
           Y      Y     G +LVY ++  +SF+ I     +L     K  I I+L+GNK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
           R +  E+ K  A+     FLE+SA E     + F  ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G  +VGKS +  +F   +F   +  TI   F T+ + +  +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
           Y      Y     G +LVY ++  +SF+ I     +L     K  I I+L+GNK DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
           R +  E+ K  A+     FLE+SA E     + F  ++ E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 177 AALQARRGK 185

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
                     +Q  V  E+ ++ A + G F ++E SA     V         E+F +  +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
             L A  G+
Sbjct: 177 AALQARRGK 185

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                     +Q  V  E+ ++ A + G F ++E SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F+++EF      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
           Y  +    Y      ++ + +    S ++IP +W+ E++ H   N+ IIL+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 136 ----------EQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMT 173
                     +Q  V T+D +  A + +   +LE SA     V   F T
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G  +VGKS +  +F   +F      TI   F T+ + +  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
           Y      Y     G +LVY ++  +SF+ I     +L     K  I I+L+GNK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
           R +  E+ K  A+     FLE+SA E     + F  ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+ ++G  +VGKS +  +F   +F      TI   F T+ + +  +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
           Y      Y     G +LVY ++  +SF+ I     +L     K  I I+L+GNK DL  +
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
           R +  E+ K  A+     FLE+SA E     + F  ++ E
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S     DPNQ +    K+V++GDS  GK+ +L  FA++ F  +   T+  E  T +  I 
Sbjct: 11  SSKSIMDPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEID 67
Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADK 121
            + ++  +WDT+G   Y  V    Y  +   ++ +DISR ++ D +  +W  E++     
Sbjct: 68  TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P 126
Query: 122 NIVIILIGNKSDL------------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
           N  ++L+G KSDL              Q  V  +     A++ G   ++E SAL++ N
Sbjct: 127 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           G  G P +K     K+V++GD A GK+ +L   ++++F      T+  E     + +  K
Sbjct: 1   GAMGSPIRK-----KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGK 54
Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNI 123
            V+  +WDTAG E Y  +    Y      ++ + I    S ++IP +W  E++ H   N+
Sbjct: 55  QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNV 113
Query: 124 VIILIGNKSDLE------------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENA 170
            IIL+GNK DL             +Q  V  E+ ++ A + G F ++E SA     V   
Sbjct: 114 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173
Query: 171 F 171
           F
Sbjct: 174 F 174

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M +G G  +  +K     K+V++GD AVGK+ +L  F++ E      A +   F+  + V
Sbjct: 10  MNTGAGKIENGKK---ALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHV 63
Query: 61  IQHKSVK--AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRS 117
           +++K+ +    +WDTAGQE Y  +    Y  +   +L + ++ R SFD+I  +W  E++ 
Sbjct: 64  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123
Query: 118 HADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTV 174
           + D     +L+G K DL +  +  V  ++  +  QK G   ++E S++    +   F   
Sbjct: 124 YID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182
Query: 175 LTEIFN 180
           +  IF+
Sbjct: 183 VDCIFS 188

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M +G G  +  +K     K+V++GD AVGK+ +L  F++ E      A +   F+  + V
Sbjct: 9   MNTGAGKIENGKK---ALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHV 62
Query: 61  IQHKSVK--AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRS 117
           +++K+ +    +WDTAGQE Y  +    Y  +   +L + ++ R SFD+I  +W  E++ 
Sbjct: 63  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 122
Query: 118 HADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTV 174
           + D     +L+G K DL +  +  V  ++  +  QK G   ++E S++    +   F   
Sbjct: 123 YID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 181
Query: 175 LTEIFN 180
           +  IF+
Sbjct: 182 VDCIFS 187

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + I    S ++IP +W  E++ H   N+ IIL+GNK DL + 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                      Q  V +E+ ++ A +   F +LE SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 64
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y     +++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 13  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 72
           K+    K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WD
Sbjct: 3   KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWD 61
Query: 73  TAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNK 131
           TAGQE Y  +    Y     +++ + +    SF+++  +W  E+R H   N  IIL+G K
Sbjct: 62  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 120
Query: 132 SD----------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
            D          L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y     +++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y     +++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 4   GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
           GGG G   Q I    K V++GD AVGK+ +L  +  N F  +   T+   +    +V   
Sbjct: 1   GGGSGGSMQAI----KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DS 55
Query: 64  KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN 122
           K V   +WDTAGQE Y  +    Y      ++ + +    S++++  +W  E+R H   +
Sbjct: 56  KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PS 114
Query: 123 IVIILIGNKSD----------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVEN 169
             IIL+G K D          L+E++  P    +  A   + + + +LE SAL    ++ 
Sbjct: 115 TPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 174
Query: 170 AF 171
            F
Sbjct: 175 VF 176

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N FS +   T+   +    +V   K V   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED 73
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
           Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D    
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 134 ------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                 L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 89
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 69
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 81
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GDS  GK+ +L  FA++ F  +   T+  E  T +  I  + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDL--- 134
           Y  V    Y  +   ++ +DISR ++ D +  +W  E++     N  ++L+G KSDL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 135 ---------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
                      Q  V  +     A++ G   ++E SAL++ N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F +  F  D   TI   +   T +    ++   + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G ++VY ++ + SF+H+ R+ +  LR    ++  +IL+ NK DL   R V  +  KE 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
           A K  + ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F +  F  D   TI   +   T +    ++   + DTAGQE + A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G ++VY ++ + SF+H+ R+ +  LR    ++  +IL+ NK DL   R V  +  KE 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
           A K  + ++ETSA +   NV+  F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 4   GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
           GGG G  +Q I    K V++GD AVGK+ +L  +  N F  +   T+   +    +V   
Sbjct: 1   GGGSGG-SQAI----KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DS 54
Query: 64  KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN 122
           K V   +WDTAGQE Y  +    Y      ++ + +    S++++  +W  E+R H   +
Sbjct: 55  KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PS 113
Query: 123 IVIILIGNKSD----------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVEN 169
             IIL+G K D          L+E++  P    +  A   + + + +LE SAL    ++ 
Sbjct: 114 TPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 173
Query: 170 AF 171
            F
Sbjct: 174 VF 175

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
           ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74  AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
            G+  +       V  AY       ++VY I+ R SF+       +LR +   ++I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNKSDL   R V   + +  A      F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F +  F  +   TI   ++  T +    ++   + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G ++VY ++ + SF+H+ R+ +  LR    ++  +IL+ NK DL   R V  +  KE 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
           A K  + ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N    +   T+   +    +V   K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 89
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
           ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 74  AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
            G+  +       V  AY       ++VY I+ R SF+       +LR +   ++I IIL
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNKSDL   R V   + +  A      F+ETSA    NV+  F  ++ ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 64
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRR-------------------QSFDHI-PRWLEELRS 117
            Y  +    Y   VG     DI+ R                    SF+++  +W  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 118 HADKNIVIILIGNKSD----------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEA 164
           H   N  IIL+G K D          L+E++  P    +  A  +    + +LE SAL  
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 165 TNVENAF 171
             ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
           E Y  +    Y      ++ + +    SF H+  +W  E+R H   N  IIL+G K D  
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                   L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
           E Y  +    Y      ++ + +    SF H+  +W  E+R H   N  IIL+G K D  
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                   L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F +  F  +   TI   +   T +    ++   + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90  AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G ++VY ++ + SF+H+ R+ +  LR    ++  +IL+ NK DL   R V  +  KE 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
           A K  + ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
           E Y  +    Y      ++ + +    SF H+  +W  E+R H   N  IIL+G K D  
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                   L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +++VVL+GD  VGK+ + + FA  +   D    +G +   RTL +  +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 77  ERYRAVTS--AYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSD 133
           E+     S  +  +G    ++VY I+ R SF+       +LR +H   ++ IIL+GNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
           L   R V  E+ +  A      F+ETSA    NV   F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    S++++  +W  E+R H   +  IIL+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVENAF 171
                  L+E++  P    +  A   + + + +LE SAL    ++  F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLED 90
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
           Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D    
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 134 ------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                 L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 65
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K D   
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
                  L+E++  P    +  A  +    + +LE SAL    ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV-KAQIWDTAGQ 76
           ++V + G   VGKS ++ RF +  F      T  VE   R ++   KS+   QI DT G 
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHAD-KNIVIILIGNKSDL 134
            ++ A+           +LVY I+ RQS + + P + +      D ++I I+L+GNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
              R V + +A+  A+     F+ETSA    NV+  F  +L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
           ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74  AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
            G+  +       V  AY       ++VY I+ R SF+       +LR +   ++I IIL
Sbjct: 67  KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNKSDL   R V   + +  A      F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
           ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74  AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
            G+  +       V  AY       ++VY I+ R SF+       +LR +   ++I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNKSDL   R V   + +  A      F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W  E+R H   +  I+L+G K DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 137 QR 138
            +
Sbjct: 123 DK 124

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           Y  +    Y      ++ + +    SF+++  +W  E+R H   +  I+L+G K DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 138 R 138
           +
Sbjct: 123 K 123

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+   +    +V   K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 63
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W  E+R H   +  I+L+G K DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 137 QR 138
            +
Sbjct: 123 DK 124

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                       Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K V++GD AVGK+ +L  +A + F  +   T+  +    ++ +  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE 135
           E Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LIG + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 136 E------------QRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
           +            ++ +  E  ++ A++ G   ++E SAL    ++  F   +  I  
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
           Y  V    Y  +   +L +DISR ++ D  + +W  E+  +     V +LIG K+DL
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 126

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
           Y  V    Y  +   +L +DISR ++ D  + +W  E+  +   +  ++LIG K+DL
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDL 143

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
           Y  V    Y  +   +L +DISR ++ D  + +W  E+  +     V +LIG K+DL
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 127

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFA--------RNEFSLDS-KATIGVEFQTRTLVIQHKS 65
           D VFKV+L+G+S VGKS +   F           E S D+ +  I V+ +  TL++    
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVY--- 66
Query: 66  VKAQIW---DTAG--QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HA 119
               IW   D  G  Q+       A+       ++V+ ++ R+SF  +P  L  LR+   
Sbjct: 67  ---DIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRP 116
Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ +IL+GNKSDL   R V  E+ +  A       +ETSA    N    F   + +I
Sbjct: 117 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                       Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +    +   +   T++I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA---QIW 71
           D +FKV+L+G+S VGKS +   F   +     +     +   R +++  + V      IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 72  ---DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADKNIVIIL 127
              D  G  R   + +         ++V+ ++ R+SF  +P  L  LR+     ++ +IL
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +GNKSDL   R V  E+ +  A       +ETSA    N    F   + +I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                       Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N+   +   T+   +   T++I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                       Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N+F  +   T+   +   T++I  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
                      Q+ +  E A++ A+  + + ++E SAL    ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 30  KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
           KS +  +F    F      TI  +F  + + +       +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 90  AVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
             G +LVY +  +QSF  I P   + +R    + + +IL+GNK DLE +R V + + +  
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
           A++ G  F+ETSA   T V+  F  ++ ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 17  VFKVVLIGDSAVGKSQILARFA--------RNEFSLDS-KATIGVEFQTRTLVIQHKSVK 67
           VFKV+L+G+S VGKS +   F           E S D+ +  I V+ +  TL++      
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY----- 56
Query: 68  AQIW---DTAG--QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADK 121
             IW   D  G  Q+       A+       ++V+ ++ R+SF  +P  L  LR+     
Sbjct: 57  -DIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           ++ +IL+GNKSDL   R V  E+ +  A       +ETSA    N    F   + +I
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ +L +    E  + +  TIG   +T    +Q+K++   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R R++   YYR   G + V D + R         ++ + +  + +N V ++  NK DL E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
             +     A E  +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%)
Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV-KA 68
           P Q  DY  +VV+ G   VGKS ++ RF +  F      TI  E   R ++   KSV   
Sbjct: 3   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI--EDTYRQVISCDKSVCTL 58
Query: 69  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDH---IPRWLEELRSHADKNIVI 125
           QI DT G  ++ A+           +LV+ ++ +QS +    I + + +++   + +I +
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPV 117
Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176
           +L+GNK D E QR V T +A+  AQ+    F+ETSA    NV+  F  +LT
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           V+KV+L+G   VGKS +   F   E   +++A  G  +  R++V+  +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
           +  R +           ++VY ++ + SF+       +LR +    ++ IIL+GNKSDL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V  ++ +  A      F+ETSA    NV+  F  V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           V+KV+L+G   VGKS +   F   E   +++A  G  +  R++V+  +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
           +  R +           ++VY ++ + SF+       +LR +    ++ IIL+GNKSDL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V  ++ +  A      F+ETSA    NV+  F  V+ +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           V+KV+L+G   VGKS +   F   E   +++A  G  +  R++V+  +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
           +  R +           ++VY ++ + SF+       +LR +    ++ IIL+GNKSDL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V  ++ +  A      F+ETSA    NV+  F  V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++ +G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            R +   YY G  G + V D + R   D   + L   +     ++ +I++  NK DL +
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ +L +    E  + +  TIG   +T    +Q+K++   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R R++   YYR   G + V D + R         ++ + +  + +N   ++  NK DL E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
             +     A E  +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ +L +    E  + +  TIG   +T    +Q+K++   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R R++   YYR   G + V D + R         ++ + +  + +N   ++  NK DL E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 137 QRAVPTEDAKEFAQKEGL 154
             +     A E  +K GL
Sbjct: 116 AMS-----AAEITEKLGL 128

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    + S+ +  T+G   +T    + +K+VK  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           R R +   Y++   G + V D + R+    +   L++ L     ++ V++L  NK DL  
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
             A+      E   K GL
Sbjct: 133 AMAIS-----EMTDKLGL 145

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L   ++ +F      T+  E     + +  + V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDL--- 134
           Y  +    Y  +   ++ + I    S +++  +W+ E+  H  + + IIL+G K DL   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 135 ---------EEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                    E Q+ V +++ +  A + G   + E SA     V   F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSD 133
           + R +   YY+     + V D + R   D I    EEL    +    +N ++++  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 134 LEEQRAVPTEDAKEFAQKEGL-------FFLETSALEATNVENAF 171
           L +  ++      E  +K GL       ++ +TS   ATN +  +
Sbjct: 130 LPQAMSIS-----EVTEKLGLQTIKNRKWYCQTSC--ATNGDGLY 167

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E  + +  TIG   +T    ++ +++   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
            R +   YY    G + V D + R+  D     L  + +  + K+ +I++  NK DL
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           + R +   Y++   G + V D + R    +S D + + L+E      ++ V+++  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE---DELRDAVLLVFANKQD 141
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLET 159
           +    A+P     E   K GL  L +
Sbjct: 142 MPN--AMP---VSELTDKLGLQHLRS 162

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 21/146 (14%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWL--EELRSHADKNIVIILIGNK 131
           + R +   Y++   G + V D + R    ++ D + R L  +ELR     + V+++  NK
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANK 130
Query: 132 SDLEEQRAVPTEDAKEFAQKEGLFFL 157
            DL         +A E   K GL  L
Sbjct: 131 QDLPN-----AMNAAEITDKLGLHSL 151

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
                  +A E   K GL  L
Sbjct: 281 -----AMNAAEITDKLGLHSL 296

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
                  +A E   K GL  L
Sbjct: 132 -----AMNAAEITDKLGLHSL 147

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
                  +A E   K GL  L
Sbjct: 133 -----AMNAAEITDKLGLHSL 148

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
                  +A E   K GL  L
Sbjct: 116 -----AMNAAEITDKLGLHSL 131

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ L+G    GK+  +   A  +FS D   T+G  F  R   +   +V  +IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRK--VTKGNVTIKIWDIGGQP 78
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
           R+R++   Y RG    + + D + R+  +     L  L      + I ++++GNK DL
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G    GK+ IL +F+ NE  + +  TIG   +   +VI   + +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 78
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++E 
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 138 RAV 140
             V
Sbjct: 139 MTV 141

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G    GK+ IL +F+ NE  + +  TIG   +   +VI   + +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 77
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++E 
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 138 RAV 140
             V
Sbjct: 138 MTV 140

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ +L +    E  + +  TIG   +     +Q+ ++   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVE----CVQYCNISFTVWDVGGQD 72
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R R++   YY    G + V D + R         ++ + +  +  N   ++  NK DL E
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
             +     A E  +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E  + +  TIG   +T T    +K++K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGQT 57
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQ----SFDHIPRWLEELRSHADKNIVIILIGNKSD 133
             R     YY      + V D   R     S   +   LEE      +  ++++  NK D
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 114
Query: 134 LEEQRAVPTEDAKEFA------QKEGLFFLETSALEATNVENAF 171
           + EQ   P+E A          +K  +F  +TSA + T ++ A 
Sbjct: 115 M-EQAMTPSEMANALGLPALKDRKWQIF--KTSATKGTGLDEAM 155

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   +    S  T+G   +T    ++H+  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
             R+    Y+    G + V D + RQ      R L+ L          +++  NK DL
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E  + +  TIG   +T    +++K++   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
                  +A E   K GL  L
Sbjct: 118 -----AMNAAEITDKLGLHSL 133

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           + ++G    GKS +  +F    F  +    +   + +    + H+ V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 80  RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEE 136
           R     Y   A   ++VY +  RQSFD    +LE L  HA    ++I  +L+GNK D+ +
Sbjct: 83  RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSA-LEATNVENAFMTVLTE 177
            R V   +    A + G  F E SA L+  +V++ F   + E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ L+G    GK+  +   A  +F+ D   T+G  F  R   I   +V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 78
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R+R++   Y RG    + + D + ++  +     L  L      + I ++++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP- 137
Query: 137 QRAVPTEDAKEFAQKEGL 154
                  D KE  +K  L
Sbjct: 138 ----GALDEKELIEKMNL 151

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   +    S  T+G   +T    ++H+  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
             R+    Y+    G + V D + RQ      R L+ L          +++  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ L+G    GK+  +   A  +F+ D   T+G  F  R   I   +V  ++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 87
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK----NIVIILIGNKSD 133
           R+R++   Y RG    + + D + ++  +       EL +  DK     I ++++GNK D
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 134 LEEQRAVPTEDAKEFAQKEGL 154
           L         D KE  +K  L
Sbjct: 145 LP-----GALDEKELIEKMNL 160

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   +    S  T+G   +T    ++H+  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
             R+    Y+    G + V D + RQ      R L+ L          +++  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G    GK+ IL +F+ NE  + +  TIG   +   +VI   + +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 72
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++E 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 138 RAVP 141
             V 
Sbjct: 133 MTVA 136

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G    GK+ IL +F+ NE  + +  TIG   +   +VI   + +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 72
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++E 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 138 RAVP 141
             V 
Sbjct: 133 MTVA 136

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHKSVK---AQIWDT 73
           K+ ++G++  GK+ +L +  + + S      AT+G++ +   + I+ K  +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNK- 131
           AG+E + +    +       + VYD+S+ Q+  D    WL  +++ A  + V IL+G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 120
Query: 132 --SDLEEQRAVPTEDAKEFAQKEGL 154
             SD ++++A  ++  KE   K G 
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGF 145

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHKSVK---AQIWDT 73
           K+ ++G++  GK+ +L +  + + S      AT+G++ +   + I+ K  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNK- 131
           AG+E + +    +       + VYD+S+ Q+  D    WL  +++ A  + V IL+G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 122
Query: 132 --SDLEEQRAVPTEDAKEFAQKEGL 154
             SD ++++A  ++  KE   K G 
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGF 147

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           KV+++G    GK+ IL +F  NE  + +  TIG   +     I  K+    +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEE----IVVKNTHFLMWDIGGQES 72
Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
            R+  + YY      +LV D   R+        L  + +H D +   +++  NK D++
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMK 130

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           + +++++G    GK+ IL +F  N   +D+   T+G   +T    ++H+  K  IWD  G
Sbjct: 1   MLRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGG 54
Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
            +  R+    Y+    G + V D + RQ      R L+ L          +++  NK DL
Sbjct: 55  LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E  + +K TIG   +T    + +K++K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFD------HIPRWLEELRSHADKNIVIILIGNK 131
             R     YY      + V D + +          H+    EEL+  A     +++  NK
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 132 SD 133
            D
Sbjct: 129 QD 130

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 29  GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88
           GK+ IL +F   +    S  T+G   +T    ++H+  K  IWD  GQ+  R+    Y+ 
Sbjct: 30  GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 89  GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
              G + V D + RQ      R L+ L          +++  NK DL
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E  + +  TIG   +T    + +K++K Q+WD  G  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQ----SFDHIPRWLEELRSHADKNIVIILIGNKSD 133
             R     YY      + V D   R     S   +   LEE      +  ++++  NK D
Sbjct: 60  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 116
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFL--------ETSALEATNVENAF 171
           +E+        + E A   GL  L        +TSA + T ++ A 
Sbjct: 117 MEQAMT-----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-122
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-117
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-116
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-115
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-115
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-114
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-114
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-113
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-113
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-113
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-113
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-113
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-112
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-111
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-111
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-110
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-110
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-110
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-109
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-109
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-109
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-108
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-107
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-107
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-107
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-107
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-107
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-107
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-106
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-106
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-105
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-104
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-104
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-104
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-103
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-91
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-84
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	9e-83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	6e-82
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-80
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-76
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-75
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-71
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-69
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-67
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-67
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-65
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-45
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	9e-42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-40
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-39
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-37
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-37
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-36
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-34
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	7e-34
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-20
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	7e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	8e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-13
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-07
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  345 bits (888), Expect = e-122
 Identities = 118/222 (53%), Positives = 151/222 (68%), Gaps = 4/222 (1%)

Query: 6   GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS 65
              D     D +FK+VLIGDS VGKS +L+RF +NEF++DSK+TIGVEF TRTL I+ K 
Sbjct: 2   SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 66  VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
           +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ +
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
            LIGNKSDL   RAVPTE++K FAQ+  L F ETSAL + NV+ AF  ++  I+  V+K 
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181

Query: 186 NLTAGEGQGNGNPASLSGKK----ILVPGPAQEIPAKSSMCC 223
            +  G+   NGN    S        L P P +   A  + CC
Sbjct: 182 QMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  329 bits (847), Expect = e-117
 Identities = 110/183 (60%), Positives = 145/183 (79%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S G     ++  ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++ 
Sbjct: 11  SSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG 70

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
             +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  
Sbjct: 71  TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182
           IV++L+GNKSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190

Query: 183 NKK 185
           +K+
Sbjct: 191 SKQ 193

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  330 bits (847), Expect = e-116
 Identities = 88/213 (41%), Positives = 140/213 (65%), Gaps = 8/213 (3%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           N + DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           K DL+++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I   ++++NL   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178

Query: 191 EGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
                         K  V    Q +      CC
Sbjct: 179 -----NETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  328 bits (844), Expect = e-116
 Identities = 86/180 (47%), Positives = 119/180 (66%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G  ++  D++FK ++IG++  GKS +L +F   +F  DS  TIGVEF ++ + +  K VK
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60

Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            QIWDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R  A +NIVIIL
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120

Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
            GNK DL+  R V   +A  FAQ+  L FLETSAL   NVE AF+    +I N +    L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  327 bits (841), Expect = e-116
 Identities = 114/177 (64%), Positives = 148/177 (83%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
            G   G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + 
Sbjct: 15  PGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 74

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
            K++KAQIWDTAG ERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD N
Sbjct: 75  GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           IVI+L+GNKSDL   RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  327 bits (841), Expect = e-115
 Identities = 88/185 (47%), Positives = 121/185 (65%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S G     +   D++FK ++IG +  GKS +L +F  N+F  DS  TIGVEF +R + + 
Sbjct: 11  SSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG 70

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
            K+VK QIWDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R+ A  N
Sbjct: 71  GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN 130

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182
           IV+IL GNK DL+ +R V   +A  FAQ+  L FLETSAL   NVE AF+     I N +
Sbjct: 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

Query: 183 NKKNL 187
           +   L
Sbjct: 191 DSGEL 195

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  326 bits (838), Expect = e-115
 Identities = 113/187 (60%), Positives = 150/187 (80%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYR +TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
              RAVPT++A+ FA+K  L F+ETSAL++TNVE AF  +LTEI+ IV++K +       
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

Query: 195 NGNPASL 201
                ++
Sbjct: 183 ESPGNNV 189

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  322 bits (829), Expect = e-114
 Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 7/186 (3%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MA+ G             K+VL+GD   GKS ++ RF +++F    ++TIG  F ++TL 
Sbjct: 3   MAAAGNK-------SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           +   +VK +IWDTAGQERY ++   YYRGA  A++V+D++ + SF+   +W++EL++  +
Sbjct: 56  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            N+V+ L GNKSDL + R V  EDA+ +AQ+ GLFF+ETSA  ATNV+  F  +   +  
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

Query: 181 IVNKKN 186
           +   +N
Sbjct: 176 VQPTEN 181

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  323 bits (830), Expect = e-114
 Identities = 88/191 (46%), Positives = 130/191 (68%)

Query: 5   GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
           G     N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K
Sbjct: 4   GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63

Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
           ++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123

Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI   +  
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183

Query: 185 KNLTAGEGQGN 195
                G  + N
Sbjct: 184 GATAGGAEKSN 194

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  321 bits (825), Expect = e-113
 Identities = 89/191 (46%), Positives = 123/191 (64%), Gaps = 4/191 (2%)

Query: 1   MASGGGYGDP----NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQT 56
           M S   +         +  Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60

Query: 57  RTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR 116
           R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R
Sbjct: 61  RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120

Query: 117 SHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176
            H+  N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A NVE AF+    
Sbjct: 121 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

Query: 177 EIFNIVNKKNL 187
           EI+  + +   
Sbjct: 181 EIYRKIQQGLF 191

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  321 bits (825), Expect = e-113
 Identities = 66/223 (29%), Positives = 127/223 (56%), Gaps = 16/223 (7%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           M++GG +G+P       FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ 
Sbjct: 4   MSTGGDFGNP----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 59

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           ++ ++V+ Q+WDTAG ER+R++  +Y R +  A++VYDI+   SF    +W++++R+   
Sbjct: 60  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            +++I+L+GNK+DL ++R V  E+ +  A++  + F+ETSA    NV+  F  V   +  
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

Query: 181 IVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
           + + ++ +  +               +     QE P     C 
Sbjct: 180 MESTQDRSREDMID------------IKLEKPQEQPVSEGGCL 210

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  319 bits (821), Expect = e-113
 Identities = 80/182 (43%), Positives = 121/182 (66%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
            +  DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ RT+ +  K +K QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +T+AYYRGA+G MLVYDI+  +SFD+I  W+  +  HA  ++  +++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           K D+ ++R V  E  ++ A   G+ F+ETSA    NVENAF T+  +I   ++K      
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATA 181

Query: 191 EG 192
            G
Sbjct: 182 AG 183

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  320 bits (822), Expect = e-113
 Identities = 69/204 (33%), Positives = 121/204 (59%), Gaps = 4/204 (1%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           +   DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAG ERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  ++L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAG 190
           K D+E++R V +E  ++ A   G  F E SA +  NV+  F  ++  I   +++   TA 
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 191 EGQGNGNPASLSGKKILVPGPAQE 214
                       G ++        
Sbjct: 182 PAVTGAKQ----GPQLTDQQAPPH 201

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  319 bits (820), Expect = e-113
 Identities = 88/174 (50%), Positives = 119/174 (68%)

Query: 6   GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS 65
           G         Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + 
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 66  VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
           +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VI
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 123

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           ILIGNK+DLE QR V  E+AK+FA++ GL FLE SA    NVE+AF+    +I+
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  318 bits (817), Expect = e-112
 Identities = 76/189 (40%), Positives = 120/189 (63%), Gaps = 5/189 (2%)

Query: 1   MASGGGYGD-----PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ 55
           M S   +         +  DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60

Query: 56  TRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL 115
            +T+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YDI+ ++SF  +  W  ++
Sbjct: 61  VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120

Query: 116 RSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
           ++++  N  +IL+GNK DLE++R VP ED +  A   G  F E SA E  NV+  F  ++
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

Query: 176 TEIFNIVNK 184
             I   +N+
Sbjct: 181 DVICEKMNE 189

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  318 bits (818), Expect = e-112
 Identities = 75/189 (39%), Positives = 118/189 (62%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           SG       +  D++FK+VLIG++ VGK+ ++ RF +  F     ATIGV+F  +T+ I 
Sbjct: 12  SGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN 71

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
            + VK QIWDTAGQER+R++T +YYR A   +L YDI+  +SF  +P WL E+  +A   
Sbjct: 72  GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK 131

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182
           ++ +L+GNK DL E+R V  + A+EF++ + +++LETSA E+ NVE  F+ +   + +  
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

Query: 183 NKKNLTAGE 191
            +  L    
Sbjct: 192 RQNTLVNNV 200

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  316 bits (811), Expect = e-111
 Identities = 89/176 (50%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 6   GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS 65
           G GDP+++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 66  VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
           VK QIWDTAGQER+R +T +YYR A GA+L YDI++R SF  +P W+E++R +A  NIV 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
           +LIGNKSDL E R V   +A+  A+    L  +ETSA +++NVE AF+ V TE+  
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  315 bits (810), Expect = e-111
 Identities = 86/179 (48%), Positives = 126/179 (70%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
             G      N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +
Sbjct: 18  FQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL 77

Query: 62  QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK 121
             K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +
Sbjct: 78  DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE 137

Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI  
Sbjct: 138 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  315 bits (809), Expect = e-110
 Identities = 76/198 (38%), Positives = 119/198 (60%), Gaps = 1/198 (0%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
               +  D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK
Sbjct: 11  SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK 70

Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            Q+WDTAGQER+R +T+AYYRGA+G +LVYD++  ++F +I +W + +  HA+    ++L
Sbjct: 71  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130

Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
           +GNKSD+ E R V  +  +  A++ G+ F+E+SA    NV   F T+   I   ++   L
Sbjct: 131 VGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKL 189

Query: 188 TAGEGQGNGNPASLSGKK 205
                   GN +  SG  
Sbjct: 190 VGVGNGKEGNISINSGSG 207

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  313 bits (805), Expect = e-110
 Identities = 66/180 (36%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
           +SG       +  D+  +V++IG   VGK+ ++ RF  + F    K+T+GV+F+ +T+ +
Sbjct: 11  SSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL 70

Query: 62  QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK 121
           + K ++ QIWDTAGQER+ ++TSAYYR A G +LVYDI+++++FD +P+W++ +  +A +
Sbjct: 71  RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE 130

Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEIFN 180
           +  ++L+GNK D E  R +  +  ++FAQ+  G+ F E SA +  NV+  F+ ++ +I  
Sbjct: 131 DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  313 bits (803), Expect = e-110
 Identities = 75/183 (40%), Positives = 121/183 (66%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
            +SG          DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+ 
Sbjct: 7   HSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY 66

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
              K VK QIWDTAGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++ 
Sbjct: 67  RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            N  +IL+GNK D+EE+R VPTE  +  A++ G  F E SA E  +V  AF  ++  I +
Sbjct: 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186

Query: 181 IVN 183
            ++
Sbjct: 187 KMS 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  311 bits (800), Expect = e-109
 Identities = 72/177 (40%), Positives = 109/177 (61%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
           P        KV L+GD+ VGKS I+ RF ++ F  +   TIG  F T+T+   ++  K  
Sbjct: 16  PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFL 75

Query: 70  IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129
           IWDTAGQER+ ++   YYRG+  A++VYDI+++ SF  + +W++EL+ H  +NIV+ + G
Sbjct: 76  IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135

Query: 130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           NK DL + R VP +DAKE+A+  G   +ETSA  A N+E  F  +  +I  +   +N
Sbjct: 136 NKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  311 bits (799), Expect = e-109
 Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSV 66
           G      D  FKV+L+GDS VGK+ +L RF    F   +  +T+G++F+ + L +    V
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII 126
           K Q+WDTAGQER+R+VT AYYR A   +L+YD++ + SFD+I  WL E+  +A  ++ ++
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           L+GNK D   +R V  ED ++ A++ GL F+ETSA    NV+ AF  +  E+     K 
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  311 bits (798), Expect = e-109
 Identities = 80/175 (45%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
            +  D++FK+++IGDS VGKS +L RFA N FS     TIGV+F+ RT+ I  + VK QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +TS YYRG  G ++VYD++  +SF ++ RWL E+  + D ++  IL+GN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           K+D  E++ V TEDA +FA + G+   ETSA E  NVE  F  +   +       
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  310 bits (797), Expect = e-109
 Identities = 64/165 (38%), Positives = 97/165 (58%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
            Y FKVVL+G+  VGK+ ++ R+  N+F+     T+G  F T+ L I  K V   IWDTA
Sbjct: 4   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+ A+   YYR + GA+LVYDI+   SF  +  W++ELR      I + ++GNK DL
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           E++R V  ++A+ +A+  G     TSA +   +E  F+ +   + 
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  307 bits (789), Expect = e-108
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS-VKAQIWDT 73
               K+V++GD A GK+ +   FA+  F    K TIG++F  R + +     V  QIWD 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWL---EELRSHADKNIVIILIGN 130
            GQ     +   Y  GA G +LVYDI+  QSF+++  W    +++   ++   ++ L+GN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           K DLE  R +  E    F Q+ G      SA    +V   F  V  EI  I   K
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  307 bits (788), Expect = e-108
 Identities = 68/161 (42%), Positives = 98/161 (60%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV L+GD+ VGKS I+ RF  + F  +   TIG  F T+T+  Q++  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+RA+   YYRG+  A++VYDI++ ++F  +  W+ ELR H   +IV+ + GNK DL + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V   DAK++A      F+ETSA  A N+   F+ +   I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  305 bits (785), Expect = e-107
 Identities = 73/163 (44%), Positives = 107/163 (65%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
             FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QERY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +RAV  ++A+ +A    L F+ETSA  + NV   FM +  ++
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  306 bits (786), Expect = e-107
 Identities = 63/179 (35%), Positives = 116/179 (64%), Gaps = 4/179 (2%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S G +G+P       FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++
Sbjct: 4   SSGDFGNP----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 59

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
            ++V+ Q+WDTAGQER+R++  +Y R +  A++VYDI+   SF    +W++++R+    +
Sbjct: 60  DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119

Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
           ++I+L+GNK+DL ++R V TE+ +  A++  + F+ETSA    NV+  F  V   +  +
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  307 bits (789), Expect = e-107
 Identities = 71/198 (35%), Positives = 118/198 (59%), Gaps = 11/198 (5%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
           S G     +   DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V  
Sbjct: 11  SSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN 70

Query: 63  HKS----------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWL 112
            +           V  Q+WDTAGQER+R++T+A++R A+G +L++D++ +QSF ++  W+
Sbjct: 71  AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM 130

Query: 113 EELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
            +L+++A  +N  I+LIGNK+DL +QR V    A+E A K G+ + ETSA    NVE A 
Sbjct: 131 SQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAV 190

Query: 172 MTVLTEIFNIVNKKNLTA 189
            T+L  I   + +     
Sbjct: 191 ETLLDLIMKRMEQCVEKT 208

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  306 bits (787), Expect = e-107
 Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 6/199 (3%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
            S G  G  ++ +    K+++IG+S VGKS +L RF  + F  +  ATIGV+F+ +T+ +
Sbjct: 1   GSSGSSG-MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV 59

Query: 62  QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK 121
                K  IWDTAGQER+R +T +YYRGA G +LVYD++RR +F  +  WL EL ++  +
Sbjct: 60  DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR 119

Query: 122 N-IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           N IV +L+GNK D  E R V   +  +FA+K  + F+E SA     V+ AF  ++ +I  
Sbjct: 120 NDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII- 177

Query: 181 IVNKKNLTAGEGQGNGNPA 199
                 L   E Q +G  +
Sbjct: 178 --QTPGLWESENQNSGPSS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  305 bits (784), Expect = e-107
 Identities = 73/170 (42%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA+G +LVYDI+  ++F +I +W + +  HA+    ++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            E R V  +  +  A++ G+ F+E+SA    NV   F T+   I   ++ 
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  306 bits (785), Expect = e-107
 Identities = 67/187 (35%), Positives = 117/187 (62%), Gaps = 11/187 (5%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH------ 63
            +   DY+ K + +GDS VGK+ +L ++   +F+     T+G++F+ + +V +       
Sbjct: 4   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63

Query: 64  ----KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA 119
               + +  Q+WDTAG ER+R++T+A++R A+G +L++D++  QSF ++  W+ +L+ HA
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123

Query: 120 D-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             +N  I+L GNKSDLE+QRAV  E+A+E A+K G+ + ETSA   TN+ +A   +L  I
Sbjct: 124 YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

Query: 179 FNIVNKK 185
              + + 
Sbjct: 184 MKRMERS 190

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  304 bits (781), Expect = e-106
 Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 6/179 (3%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
              +      +K+VL GD+AVGKS  L R  +NEF  +  AT+GV+FQ +TL++  +   
Sbjct: 19  SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV 78

Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
            Q+WDTAGQER+R++  +Y+R A G +L+YD++  +SF +I  W++ +   A + + I+L
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138

Query: 128 IGNKSDL------EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           +GNK+D+      E Q+ VP    ++ A   G  F ETSA + +N+  A + +  E+  
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  302 bits (775), Expect = e-106
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 1/166 (0%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           +   K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  R + +  + V+  +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQE + A+T AYYRGA   +LV+  + R+SF+ I  W E++ +    +I   L+ NK DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            +   +  E+A+  A++  L F  TS  E  NV   F  +  +   
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  301 bits (772), Expect = e-105
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 5/176 (2%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
           P      +FK+++IGDS VGK+ +  RF    F   ++ATIGV+F+ R + I  + +K Q
Sbjct: 13  PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72

Query: 70  IWDTAGQERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIIL 127
           +WDTAGQER+R ++   YYR     + VYD++   SF  +P W+EE + H   N I  IL
Sbjct: 73  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 132

Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL---EATNVENAFMTVLTEIFN 180
           +GNK DL     VPT+ A++FA    +   ETSA    +  +VE  FMT+  ++ +
Sbjct: 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  300 bits (769), Expect = e-104
 Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 12  QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVE-FQTRTLVIQHKSVKAQI 70
           ++ +  +K+ LIGD  VGK+  + R     F  +  AT+G        L  Q   +K  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQE+   +   YY GA GA+L +D++ R +  ++ RW++E ++       I++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN-----IVNKK 185
           K D++ ++ +  +   E  + +   + E SA  A N    F+ +            V+  
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNV 185

Query: 186 NLTAGEGQGNGNPASLSGKKILVPGPAQEIPAK 218
           NL   E   + +    S     +   ++  P +
Sbjct: 186 NLEPTEVNYDYHSPEESKYIDYMEQASKMAPEE 218

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  299 bits (768), Expect = e-104
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFAR--NEFSLDSKATIGVEFQTRTLVIQHKSVKA 68
           +       KV ++G++ VGKS +++ F    ++F  D   T GVE     + I   +V  
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73

Query: 69  QIW--DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR---SHADKNI 123
           +++  DTAG + Y+   S Y+ G   A+LV+D+S  +SF+    W E L+      ++ +
Sbjct: 74  ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133

Query: 124 VIILIGNKSDLEEQR-AVPTEDAKEFAQKEGLFFLETSA-LEATNVENAFMTVLTEIFNI 181
             +L+ NK+DL  QR  V  + A+++A    L F + SA     + +  F+++ T  +  
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

Query: 182 VNKKNLTAGEGQGN 195
              K     +   N
Sbjct: 194 YEDKVAAFQDACRN 207

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  298 bits (766), Expect = e-104
 Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
             +   + KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QI
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVII 126
           WDTAGQER++++  A+YRGA   +LV+D++   +F  +  W +E    A     +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           ++GNK DLE ++            K  + + ETSA EA NVE AF T+         +  
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

Query: 187 LTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
           L     +             +     +   A +  C 
Sbjct: 182 LYNEFPEP------------IKLDKNERAKASAESCS 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  294 bits (755), Expect = e-103
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 6/171 (3%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
             +FKV+L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGN 130
           GQER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD    ++   +++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 131 KSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
           K D+ E R V TE+A+ + +  G   + ETSA +ATNV  AF   +  +  
Sbjct: 125 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  283 bits (726), Expect = 2e-98
 Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 7/177 (3%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQ 69
           + +   + KV+++GDS VGK+ ++ R+  +++S   KATIG +F T+ + +   K    Q
Sbjct: 2   SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61

Query: 70  IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVI 125
           +WDTAGQER++++  A+YRGA   +LVYD++   SF++I  W +E   HA+    +    
Sbjct: 62  VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121

Query: 126 ILIGNKSDLEE-QRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
           +++GNK D EE ++ V  + A+E A+  G +    TSA  A NV+ AF  +      
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  277 bits (711), Expect = 1e-95
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MAS         +    FK+VL+GD   GK+  + R    EF     AT+GVE       
Sbjct: 4   MASAA-----QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 58

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
                +K  +WDTAGQE++  +   YY  A  A++++D++ R ++ ++P W  +L    +
Sbjct: 59  TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE 118

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            NI I+L GNK D+++++      +  F +K+ L + + SA    N E  F+ +  ++  
Sbjct: 119 -NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175

Query: 181 IVNKK 185
             N +
Sbjct: 176 DPNLE 180

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  265 bits (679), Expect = 4e-91
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 40/205 (19%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA------ 68
              +K VL+G+S+VGKS I+ R  ++ F  ++  TIG  F T  + +   ++K       
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 69  -------------------------------QIWDTAGQERYRAVTSAYYRGAVGAMLVY 97
                                           IWDTAGQERY ++   YYRGA  A++V+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 98  DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFL 157
           DIS   + D    W+ +L+  +  N +IIL+ NK D   +  V   + +++AQ   L F+
Sbjct: 125 DISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFI 181

Query: 158 ETSALEATNVENAFMTVLTEIFNIV 182
           +TSA   TN++N F  +  EI+  +
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  257 bits (658), Expect = 6e-88
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
           +SG        + D +FKV+L+G+S VGKS +   F   +     +     +   R +++
Sbjct: 8   SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67

Query: 62  QHKSVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHA 119
             + V   ++D   Q            +     ++V+ ++ R+SF  +P  L  L     
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127

Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             ++ +IL+GNKSDL   R V  E+ +  A       +ETSA    N    F   + +I
Sbjct: 128 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  247 bits (633), Expect = 1e-84
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 2/164 (1%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           VFKV+L+G+S VGKS +   F   +     +     +   R +++  + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 77  ERYRAV-TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADKNIVIILIGNKSDL 134
                       +     ++V+ ++ R+SF  +P  L  L       ++ +IL+GNKSDL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
              R V  E+ +  A       +ETSA    N    F   + +I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  246 bits (629), Expect = 6e-84
 Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+VL+G++AVGKS I+ RF  N+F+ + + TIG  F T+ + I   +VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD---L 134
           R+ ++   YYR A  A++VYD+++ QSF     W++EL   A K+I+I L+GNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             +R V  E+ ++ A+++GL F ETSA    NV + F+ +  +I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  243 bits (623), Expect = 9e-83
 Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 2/177 (1%)

Query: 3   SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
              G G  +Q    + KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+ 
Sbjct: 4   GISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD 62

Query: 63  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADK 121
            + V+  I DTAGQE Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+
Sbjct: 63  GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 122

Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           N+  +L+GNKSDLE++R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI
Sbjct: 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  242 bits (619), Expect = 6e-82
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MA+        Q    + KV+++G   VGKS +  +F  +EF  D + T    ++ + +V
Sbjct: 1   MAANK---PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVV 56

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHA 119
           +  + V+  I DTAGQE Y A+   Y+R   G + V+ I+  +SF     + E+ LR   
Sbjct: 57  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 116

Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           D+N+  +L+GNKSDLE++R V  E+AK  A++  + ++ETSA    NV+  F  ++ EI 
Sbjct: 117 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176

Query: 180 NIVNKKNLTAGEGQGNGNPASLSGKK 205
               + +      +   + A    ++
Sbjct: 177 ARKMEDSKEKNGKKKRKSLAKRIRER 202

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  237 bits (607), Expect = 2e-80
 Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + KV+++G   VGKS +  +F  +EF  D + T    ++ + +V+  + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLE 135
           E Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           ++R V  E+AK  A +  + ++ETSA    NV+  F  ++ EI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  234 bits (599), Expect = 3e-79
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +++VVL+GD  VGK+ + + FA  +   D    +G +   RTL +  +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 77  ERYRAVTS--AYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADKNIVIILIGNKSD 133
           E+     S  +  +G    ++VY I+ R SF+       +L R+H   ++ IIL+GNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           L   R V  E+ +  A      F+ETSA    NV   F  V+ ++
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  227 bits (582), Expect = 3e-76
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---V 66
           ++  +  ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADKNIVI 125
              +W+  G+  +  +     +     ++VY I+ R SF+       +L R+   ++I I
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           IL+GNKSDL   R V   + +  A      F+ETSA    NV+  F  ++ ++    + K
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

Query: 186 N 186
            
Sbjct: 209 E 209

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  227 bits (582), Expect = 3e-76
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 2/177 (1%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
              +    KVV++G   VGK+ +  +F   EFS     T+   + ++ + +        +
Sbjct: 18  GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHL 76

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIG 129
            DTAGQ+ Y  +  ++  G  G +LVY ++   SF  I    ++    H    + ++L+G
Sbjct: 77  VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           NK+DL  +R V   + K+ A+  G  F+E+SA E    +  F  V+ EI  + N   
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  224 bits (574), Expect = 2e-75
 Identities = 39/175 (22%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHK---SVKAQIWD 72
            K++++G++  GK+ +L +  + + S      AT+G++ +   + I+ K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 73  TAGQERYRAVTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNK 131
            AG+E + +    +       + VYD+S+ Q+  D +  WL  +++ A  +  +IL+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 132 SDLEEQR---AVPTEDAKEFAQKEGL-FFLETSALEATNVENAFMTVLTEIFNIV 182
            D+ +++   A  ++  KE   K G     +   + AT   +A   +   I N  
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  224 bits (574), Expect = 2e-75
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
               K+V++G   VGKS +  +F ++ F  D   TI   + T+   +     +  I DTA
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTA 65

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSD 133
           GQE + A+   Y R   G +LV+ I+ RQSF+ + +   + LR     +  ++L+GNK+D
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           LE QR VP  +A  F     + + E SA    NV+ AF  ++  +
Sbjct: 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  221 bits (567), Expect = 2e-74
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           V+KV+L+G   VGKS +   F   E         G  +  R++V+  +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLE 135
           +  R +           ++VY ++ + SF+       +  R+    ++ IIL+GNKSDL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V  ++ +  A      F+ETSA    NV+  F  V+ +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  217 bits (554), Expect = 3e-72
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKS---VKAQIWDT 73
           ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL-RSHADKNIVIILIGNKS 132
            G+  +  +     +     ++VY I+ R SF+       +L R+   ++I IIL+GNKS
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           DL   R V   + +  A      F+ETSA    NV+  F  ++ ++    + K 
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  213 bits (545), Expect = 5e-71
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
              K+ ++G  +VGKS +  +F   +F      TI   F T+ + +  +    Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAG 63

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDL 134
           Q+ Y      Y     G +LVY ++  +SF+ I     + L       I I+L+GNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
             +R +  E+ K  A+     FLE+SA E     + F  ++ E      K +    +G+ 
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA----EKMDGACSQGKS 179

Query: 195 N 195
           +
Sbjct: 180 S 180

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  208 bits (531), Expect = 4e-69
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   +  + +VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D  ++ ++L+GNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  208 bits (531), Expect = 6e-69
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           ++V + G   VGKS ++ RF +  F      T+   +  + +         QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK--NIVIILIGNKSDLE 135
           ++ A+           +LVY I+ RQS + +    E++        +I I+L+GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V + +A+  A+     F+ETSA    NV+  F  +L   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  207 bits (530), Expect = 9e-69
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
              +    +K+V++GD  VGKS +  +F +  F  D   TI   +  +   I ++     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILD 69

Query: 70  IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILI 128
           + DTAGQE + A+   Y R   G ++VY ++ + SF+H+ R+ + +    D+ +  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 129 GNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTVLTEI 178
            NK DL   R V  +  KE A K  + ++ETSA +   NV+  F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  206 bits (527), Expect = 2e-68
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +KVV++G   VGKS +  +F    F      TI  +F  + + +       +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ ++   Y +   G +LVY +  +QSF  I    ++ +R    + + +IL+GNK DLE 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V + + +  A++ G  F+ETSA   T V+  F  ++ ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  205 bits (524), Expect = 1e-67
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
              ++VV+ G   VGKS ++ RF +  F      TI   +  + +         QI DT 
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTT 64

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR--SHADKNIVIILIGNKS 132
           G  ++ A+           +LV+ ++ +QS + +    + +     + ++I ++L+GNK 
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEG 192
           D  + R V T +A+  AQ+    F+ETSA    NV+  F  +LT         N+     
Sbjct: 125 DETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183

Query: 193 QGNGNPASLSGK 204
                   + GK
Sbjct: 184 GKQKRTDRVKGK 195

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  204 bits (521), Expect = 2e-67
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI   ++ + + +  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E+ LR    +++ +IL+GNK DLE+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 137 QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A++     FLE+SA    NV   F  ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  203 bits (519), Expect = 6e-67
 Identities = 56/178 (31%), Positives = 97/178 (54%), Gaps = 3/178 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ + +VI  ++    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I  + E+  R    +++ ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
            R V T+ A++ A+  G+ F+ETSA     V++AF T++ EI     K +    + + 
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK 180

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  202 bits (516), Expect = 2e-66
 Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   +  + +VI  ++    I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF  I  + E+++   D  ++ ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V T+ A E A+  G+ F+ETSA     VE+AF T++ EI
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  200 bits (510), Expect = 1e-65
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
               K+ + G + VGKS ++ RF    F  +   T+   +      I  + V  +I DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTA 84

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSD 133
           GQE        + R   G +LVYDI+ R SF+ +             KN+ +IL+GNK+D
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEA-TNVENAFMTVLTEI 178
           L+  R V TE+ ++ A +    F E SA     N+   F  +  E+
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  199 bits (508), Expect = 2e-65
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
             + ++G    GKS +  +F    F  +    +   + +    + H+ V  ++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLD 80

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDL 134
             R     Y   A   ++VY +  RQSFD    +LE L  HA    ++I  +L+GNK D+
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALE-ATNVENAFMTVLTEI 178
            + R V   +    A + G  F E SA     +V++ F   + E 
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  199 bits (506), Expect = 3e-61
 Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 12/179 (6%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH------ 63
                    KV LIGD   GK+ +L +     F      T G+   T+            
Sbjct: 34  EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93

Query: 64  --KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK 121
             K      WD  GQE   A    +   +   ML+ D     +  +   WL  +  +   
Sbjct: 94  ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG- 149

Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
              +I++ NK D      +  +   E        F   S      VE+   ++ + + +
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  183 bits (466), Expect = 6e-59
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV ++G+ + GKS ++ R+    +    ++  G  F  + +V+  +S    I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDL-- 134
             +     +       + V+ +    SF  +  +   L S  +   + ++L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 135 EEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
              R +    A++ +       + ET A    NVE  F  V  ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  178 bits (455), Expect = 2e-57
 Identities = 31/178 (17%), Positives = 71/178 (39%), Gaps = 13/178 (7%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ ++GD+  GKS ++ RF    +    + T   ++  + +++  ++    I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-----IVIILIGNKS 132
             +     +   A   + V+ +    SF  + R   +L S   +      + ++   ++ 
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 133 DLEEQRAVPTEDAKEF-AQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 189
                R V    A+   A  +   + ET A    NV+  F  V  ++  +  ++ L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  149 bits (378), Expect = 1e-45
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
            +      K+V++GD AVGK+ +L  F++ E       T+   F    +  +++     +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHL 75

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIG 129
           WDTAGQE Y  +    Y  +   +L + ++ R SFD+I  +W  E++ + D     +L+G
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134

Query: 130 NKSDLEE--QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
            K DL +     V  ++  +  QK G   ++E S++    +   F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  140 bits (355), Expect = 6e-42
 Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 17/199 (8%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
                 G+         KVVL+GD   GK+ +L  FA   F      T+   +    L +
Sbjct: 19  YFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQV 77

Query: 62  QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHAD 120
           + K V   IWDTAGQ+ Y  +   +Y  A   +L +D++   SFD+I  RW  E+     
Sbjct: 78  KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC- 136

Query: 121 KNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNV 167
           K + II++G K+DL +               V     +E A+  G   +LE SA    NV
Sbjct: 137 KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196

Query: 168 ENAFMTVLTEIFNIVNKKN 186
              F        +    +N
Sbjct: 197 HAVFQEAAEVALS-SRGRN 214

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  139 bits (351), Expect = 9e-42
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V +GD AVGK+ +L  +  N F  D   T+   F    +V+   +V   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    YRGA   +L + +  + S++++  +W+ EL+ +A   + I+L+G K DL +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRD 126

Query: 137 ----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT 173
                        + T   +E  +  G   ++E S+    NV+  F  
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  136 bits (344), Expect = 2e-40
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
               K+V++GD A GK+ +L  F++++F      T+  E     + +  K V+  +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSD 133
           GQE Y  +    Y      ++ + I    S ++IP +W  E++     N+ IIL+GNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 134 LEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           L +            Q  V +E+ ++ A +   F +LE SA     V   F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  134 bits (338), Expect = 2e-39
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GD A GK+ +L  F+++EF      T+   +    + +  K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y      ++ + +    S ++IP +W+ E++     N+ IIL+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                      Q  V T+D +  A +   + +LE SA     V   F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  133 bits (336), Expect = 4e-39
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 12/179 (6%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V +GD AVGK+ +L  +  N+F  D   T+  +  +  + +  + V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    YRGA   +L + +  + S++++  +W+ ELR  A  N+ I+L+G K DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRD 127

Query: 137 --------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNKKN 186
                      + +   +E  ++ G   ++E S+    NV+  F T +  +     +K 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  130 bits (329), Expect = 4e-38
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 16/168 (9%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+  +  +  +++  K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
            Y  +    Y      ++ + +    SF+++  +W  E+R H   N  IIL+G K DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148

Query: 137 ------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                          +        A++ G   +LE SAL    ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  127 bits (321), Expect = 5e-37
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 19/178 (10%)

Query: 9   DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA 68
           DPNQ +    K+V++GDS  GK+ +L  FA++ F  +   T+   +     +   + ++ 
Sbjct: 22  DPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIEL 78

Query: 69  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIIL 127
            +WDT+G   Y  V    Y  +   ++ +DISR ++ D +  +W  E++     N  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 137

Query: 128 IGNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATN-VENAF 171
           +G KSDL              Q  V  +     A++ G   ++E SAL++ N V + F
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  126 bits (319), Expect = 6e-37
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GDS  GK+ +L  FA++ F  +   T+   +     +   + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPY 67

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  V    Y  +   ++ +DISR ++ D +  +W  E++     N  ++L+G KSDL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATN-VENAF 171
                      Q  V  +     A++ G   ++E SAL++ N V + F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  126 bits (317), Expect = 2e-36
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K V++GD AVGK+ +L  +  N F  +   T+  +  +  +++  K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE- 136
           Y  +    Y     +++ + +    SF+++  +W  E+R H   N  IIL+G K DL + 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
                         +        A++ G   +LE SAL    ++  F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  126 bits (318), Expect = 2e-36
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 16/198 (8%)

Query: 2   ASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI 61
              GG G          K VL+GD AVGK+ ++  +  N +  +   T   +  +  + +
Sbjct: 5   GEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSV 63

Query: 62  QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHAD 120
             + V+ Q+ DTAGQ+ +  +    Y      +L + +    SF ++  +W+ E+R H  
Sbjct: 64  DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP 123

Query: 121 KNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNV 167
               IIL+G +SDL E            ++ VP E AK  A++     ++E SAL   N+
Sbjct: 124 -KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182

Query: 168 ENAFMTVLTEIFNIVNKK 185
           +  F   +       + +
Sbjct: 183 KEVFDAAIVAGIQYSDTQ 200

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  125 bits (315), Expect = 5e-36
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 17/179 (9%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
           G   Q +    K+VL+GD   GK+ +L   A++ +      T+   +       + + V+
Sbjct: 18  GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVE 76

Query: 68  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVII 126
             +WDT+G   Y  V    Y  +   +L +DISR ++ D    +W  E+  +   +  ++
Sbjct: 77  LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVL 135

Query: 127 LIGNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSAL-EATNVENAF 171
           LIG K+DL              Q  +  E     A++ G   +LE SA     ++ + F
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  121 bits (304), Expect = 1e-34
 Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 10  PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
            +     + K V++GD AVGK+ +L  +A + F  +   T+  +    ++ +  K     
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 69

Query: 70  IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILI 128
           ++DTAGQE Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LI
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLI 128

Query: 129 GNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           G + DL +            ++ +  E  ++ A++ G   ++E SAL    ++  F
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  120 bits (303), Expect = 7e-34
 Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 66/220 (30%)

Query: 24  GDSAVGKSQILARFAR---NEFSLDSKATIG-VEFQTRTLVIQH--------------KS 65
           G   +GKS +  RF R   +EF LD  + +   +F  R +   H                
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 66  VKAQIW-------DTAGQERYRAVTSAYYRGAV--------------------------- 91
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 92  ----------GAMLVYDISR--RQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQR 138
                     G +L  D+SR   ++FD   +++  L +   K    I+++  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +        + K+ L  +ETSA    NV+ AF T++  I
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 93.1 bits (231), Expect = 1e-22
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 9   DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA 68
           + ++    + K V++GD AVGK+ +L  +  N F  +   T+  +  +  +++  K V  
Sbjct: 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNL 205

Query: 69  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIIL 127
            +WDTAG E Y  +    Y      ++ + +    SF H+  +W  E+R H   N  IIL
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIIL 264

Query: 128 IGNKSDLEE------------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
           +G K DL +               +        A++ G   +LE SAL    ++  F
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 84.8 bits (210), Expect = 1e-20
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 18  FKVVLIGDSAVGKSQILARFARNE----------FSLDSKATIGVEFQTRTL-VIQHKSV 66
           FK+V  G    GK+  L                  + + + T+  +F    +  ++    
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD------ 120
           +  ++   GQ  Y A      RG  G + V D S           +  +R +        
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKE-FAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            ++ I++  NK DL    A+P E  +     +     LE  A E   V      V   +
Sbjct: 134 DDVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 74.5 bits (184), Expect = 7e-17
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 20/164 (12%)

Query: 18  FKVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            ++ L+G   + GK+  +   A  +F+ D   T+G  F  R   I   +V  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
            R+R++   Y RG    + + D + ++  +     L  L      + I ++++GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 136 EQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
              A+  +   E  +K  L             S  E  N++   
Sbjct: 138 G--ALDEK---ELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 72.3 bits (177), Expect = 6e-16
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDS---KATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           +++L+G    GKS I           ++   ++T  +       +     V  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDD---ISNSSFVNFQIWDFPG 78

Query: 76  QERYRAVTS---AYYRGAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGN 130
           Q  +   T      +RG    + V D      ++   +   + +           + I +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI-H 137

Query: 131 KSDL--EEQRAVPTEDAKEFAQKE---------GLFFLETSALEATNVENAFMTVLTEI 178
           K D   ++ +     D  + A  +          L F  TS  + + +  AF  V+ ++
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKVVQKL 195

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    E    +  TIG  F   T  +++K++   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVET--VEYKNICFTVWDVGGQD 84

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+        L+++    + ++ V+++  NK D+  
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 137 QRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
             A+P     E   K GL        +   T A + T + +  
Sbjct: 145 --AMPVS---ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 19/163 (11%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E    +  TIG  F   T  + +K++K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVET--VTYKNLKFQVWDLGGLT 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R     YY      + V D   R         L  +    + +  ++++  NK D+E+
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 137 QRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
             A+ +    E A   GL           +TSA + T ++ A 
Sbjct: 123 --AMTSS---EMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 27/182 (14%)

Query: 19  KVVLIGDSAVGKS----QILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           K++L+G S  GKS     I + ++  + +    ATI VE      +    ++   +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSH---LRFLGNMTLNLWDCG 60

Query: 75  GQERYRAVT-----SAYYRGAVGAMLVYDISRRQSFDHIPRW---LEELRSHADKNIVII 126
           GQ+ +            ++     + V+D+   +    I  +   L++LR ++  +  I 
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIF 119

Query: 127 LIGNKSDL--EEQRAVPTEDAKEFAQKE-------GLFFLETSALEATNVENAFMTVLTE 177
           ++ +K DL   ++R    +   +   +         L    TS  + + +  A+  ++  
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES-LYKAWSQIVCS 178

Query: 178 IF 179
           + 
Sbjct: 179 LI 180

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++G    GK+ IL +F+ NE    +  TIG         I   + +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEE--IVINNTRFLMWDIGGQE 71

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++E
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 137 QRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
              +      E +Q   L              AL    +    
Sbjct: 132 --CMTVA---EISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 19  KVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +++++G D+A GK+ IL +    E    +  TIG  F   T  +++K++   +WD  GQ+
Sbjct: 2   RILMVGLDAA-GKTTILYKLKLGEIV-TTIPTIG--FNVET--VEYKNISFTVWDVGGQD 55

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y++   G + V D + R+  +     L  + +  + ++ V+++  NK DL  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 137 QRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAFMTVLTEI 178
             A+      E   K GL        +   T A     +      +  ++
Sbjct: 116 --AMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 13/160 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E    +K TIG  F   T  + +K++K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R     YY      + V D + +       + L  +    + ++  +++  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 137 QRAVPTEDAKEFAQKEGL-----FFLETSALEATNVENAF 171
             A+   +  +      L       + +SA++   +    
Sbjct: 134 --ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 21/164 (12%)

Query: 18  FKVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            +V+++G D+A GK+ IL R    +    +  T+G      T  +Q+K++  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDVV-TTVPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
              R     Y+      + V D + R         L  L    + +  ++++  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 136 EQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
           +  A       E A++ G+          +++S+     +    
Sbjct: 137 D--AASEA---EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 21/164 (12%)

Query: 18  FKVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            KV+++G D+A GK+ IL +F+ NE    +  TIG         I   + +  +WD  GQ
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEVV-HTSPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
           E  R+  + YY      ++V D + R+        L ++ +H D +   +++  NK D++
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135

Query: 136 EQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
           E   +      E +Q   L              AL    +    
Sbjct: 136 E--CMTVA---EISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 13/160 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   +       T+G  F  +T  ++H+  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKT--LEHRGFKLNIWDVGGQK 73

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R+    Y+    G + V D + RQ      R L+ L          +++  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 137 QRAVPTEDAKEFAQKEGL-----FFLETSALEATNVENAF 171
             A+     +E  + + +          SA+   ++    
Sbjct: 134 --ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 18  FKVVLIG-DSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAG 75
             V+ +G D++ GK+ I+ +   +     +   TIG  F       +  S+   ++D +G
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH---ADKNIVIILIGNKS 132
           Q RYR +   YY+     + V D S R         L+ L +H     + I I+   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 133 DLEEQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAF 171
           DL +  AV +    + +Q   L            + A++   ++   
Sbjct: 137 DLRD--AVTSV---KVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 21/171 (12%)

Query: 18  FKVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
            +++L+G D+A GK+ +L + A  + S     T G  F  ++  +Q +  K  +WD  GQ
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDIS-HITPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
            + R    +Y+      + V D + R+ F+   + L EL        + +++  NK DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 136 EQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAFMTVLTEI 178
              A P     E A+   L             SAL    V++    V   +
Sbjct: 131 T--AAPAS---EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 13/138 (9%)

Query: 19  KVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           K++ +G D+A GK+ +L     +  +   + T      +    +   ++K   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRLA-TLQPTWH--PTSEE--LAIGNIKFTTFDLGGHI 78

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   Y+    G + + D +  + FD     L+ L + A+ K++  +++GNK D   
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138

Query: 137 QRAVPTEDAKEFAQKEGL 154
             AV      E     GL
Sbjct: 139 --AVSEA---ELRSALGL 151

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 19  KVVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           K+V +G D+A GK+ +L     +        T+     +    +    +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRLGQHV-PTLH--PTSEE--LTIAGMTFTTFDLGGHI 80

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R V   Y     G + + D +  +        L+ L +     N+ I+++GNK D  E
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140

Query: 137 QRAVPTEDAKEFAQKEGLFFLETS 160
             A+  E      +  GL+   T 
Sbjct: 141 --AISEE---RLREMFGLYGQTTG 159

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 7   YGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV 66
                       +++++G  A GK+ IL +    E    +  TIG  F   T  +++K++
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVET--VEYKNI 209

Query: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVI 125
              +WD  GQ++ R +   Y++   G + V D + R+  +     L  + +  + ++ V+
Sbjct: 210 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 269

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGL--------FFLETSALEATNVENAFMTVLTE 177
           ++  NK DL    A+      E   K GL        +   T A     +      +  +
Sbjct: 270 LVFANKQDLPN--AMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324

Query: 178 I 178
           +
Sbjct: 325 L 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 28/179 (15%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQE 77
            V+ +G    GK+ +  R    ++  D++ +I     +    +  ++     + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 78  RYRA-VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE---------LRSHADKNIVIIL 127
             R  +   +   A   + V D +  Q      R +++         + S A KN   +L
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQ------REVKDVAEFLYQVLIDSMALKNSPSLL 119

Query: 128 I-GNKSDLEEQRAVPTEDAKEFAQKEGLFFLET-----SALEATNVENAFMTVLTEIFN 180
           I  NK D+    A   +  ++  +KE      T     S L++++   A +    + F 
Sbjct: 120 IACNKQDIAM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE 176

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA----QIWDTAG 75
           V+L+G    GKS I      N   LD+       +   T     +         + +  G
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTL------YLESTSNPSLEHFSTLIDLAVMELPG 55

Query: 76  QERYRAVT---SAYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGN 130
           Q  Y   +      ++     + V D       +  ++   +E      + +I I ++ +
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIH 114

Query: 131 KSDL--EEQRAVPTEDAKEFAQKE---------GLFFLETSALEATNVENAFMTVLTEIF 179
           K D   E+ +     D  +   +E          + F  TS  + + +  AF  ++ ++ 
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKLI 173

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIG-VEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++ G    GK+ +L     +     +  +   +          +      + D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEPLS------AADYDGSGVTLVDFPGHV 102

Query: 78  RYRAVTSAYYRGAVGAM--LVY------DISR-RQSFDHIPRWLEELRSHADKNIVIILI 128
           + R   S Y +     +  L++      D  +   + + +   L    S  +  I I++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 129 GNKSDLEEQRAVPTEDAKEFAQKE 152
            NKS+L    A P    K+  + E
Sbjct: 163 CNKSELFT--ARPPSKIKDALESE 184

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
           +++ G    GK+ +L     +        T+    Q       +      + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVR----PTVV--SQEPLSAADYDGSGVTLVDFPGHVKL 68

Query: 80  RAVTSAYYRGAVGAM--LVY------DISR-RQSFDHIPRWLEELRSHADKNIVIILIGN 130
           R   S Y +     +  L++      D  +   + + +   L    S  +  I I++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 131 KSDLEEQRAVPTEDAKEFAQKE 152
           KS+L    A P    K+  + E
Sbjct: 129 KSELFT--ARPPSKIKDALESE 148

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 48/197 (24%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKA-------TIGVEFQTRTLV---IQHKSVKA 68
             V+ G    GKS +L      E     +A       T      TR  +     H     
Sbjct: 235 STVIAGKPNAGKSTLLNTLLGQE-----RAIVSHMPGT------TRDYIEECFIHDKTMF 283

Query: 69  QIWDTAGQ------------ER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL 115
           ++ DTAG              R    +  A     +  + + D+   +  D +    E  
Sbjct: 284 RLTDTAGLREAGEEIEHEGIRRSRMKMAEA---DLI--LYLLDLGTERLDDELTEIRELK 338

Query: 116 RSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
            +H       + + NK D             +    E    +  SAL    ++    T+ 
Sbjct: 339 AAHPAAKF--LTVANKLDRAANADALIRAIADGTGTE---VIGISALNGDGID----TLK 389

Query: 176 TEIFNIVNKKNLTAGEG 192
             + ++V   +      
Sbjct: 390 QHMGDLVKNLDKLHEAS 406

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 38/198 (19%)

Query: 8   GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK---ATIGVEFQTRTLVIQHK 64
            D       +F  +L       + +++ +F      ++ K   + I  E +  +++    
Sbjct: 58  KDAVSGTLRLFWTLL-----SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM---- 108

Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
                         Y       Y         Y++SR Q +  + + L ELR    KN++
Sbjct: 109 -----------TRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPA--KNVL 154

Query: 125 II-LIGN-KSDL--EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           I  ++G+ K+ +  +   +   +   +F     +F+L    L+  N     + +L ++  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDF----KIFWLN---LKNCNSPETVLEMLQKLLY 207

Query: 181 IVNKKNLTAGEGQGNGNP 198
            ++  N T+     +   
Sbjct: 208 QID-PNWTSRSDHSSNIK 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.71
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.65
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.51
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.47
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.34
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.26
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.25
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.05
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.85
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.84
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.8
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.72
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.69
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.46
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.43
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.38
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.25
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.23
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.2
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.03
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.95
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.88
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.72
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.68
2xxa_A	433	Signal recognition particle protein; protein trans	97.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.24
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.23
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.22
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.09
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.94
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.91
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.9
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.89
3co5_A	143	Putative two-component system transcriptional RES	96.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.83
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.82
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.8
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.8
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.74
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.73
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.73
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.69
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.67
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.66
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.66
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.62
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.62
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.61
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.61
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.6
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.59
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.58
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.58
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.57
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.57
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.56
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.55
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.53
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.52
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.52
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.51
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.49
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.48
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.48
1g6h_A	257	High-affinity branched-chain amino acid transport	96.46
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.45
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.45
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.44
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.44
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.44
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.43
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.43
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.42
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.42
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.42
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.42
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.41
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.41
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.4
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.4
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.4
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.39
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.38
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.37
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.36
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.35
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.35
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.34
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.32
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.31
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.31
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.31
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.31
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.3
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.3
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.3
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.3
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.3
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.3
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.29
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.27
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.26
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.25
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.23
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.22
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.22
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.21
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.19
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.17
1via_A	175	Shikimate kinase; structural genomics, transferase	96.16
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.16
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.16
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.15
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.13
3uc9_A	233	Increased recombination centers protein 6; rossman	96.12
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.12
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.12
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.12
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.11
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.09
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.09
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.05
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.01
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.0
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.99
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.99
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.99
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.96
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.96
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.93
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.92
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.92
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.91
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.88
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.88
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.85
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.85
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.85
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.85
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.84
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.84
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.83
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.83
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.8
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.79
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.78
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.78
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.77
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.74
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.73
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.72
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.72
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.7
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.69
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.69
3bos_A	242	Putative DNA replication factor; P-loop containing	95.69
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.69
2og2_A	359	Putative signal recognition particle receptor; nuc	95.66
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.65
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.64
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.62
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.6
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.6
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.58
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.55
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.52
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.52
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.48
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.45
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.39
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.37
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.35
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.33
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.29
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.29
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.28
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.28
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.27
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.22
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.21
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.19
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.17
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.14
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.12
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.08
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.04
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.01
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.99
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.98
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.97
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.94
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.94
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.91
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.85
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.85
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.85
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.79
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.78
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.77
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.76
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.75
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.74
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.74
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.71
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.7
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.69
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.65
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.64
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.61
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.58
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.57
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.57
2qgz_A	308	Helicase loader, putative primosome component; str	94.56
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.54
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.51
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.5
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.49
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.48
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.44
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.42
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.41
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.39
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	94.39
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.36
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.35
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.35
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.34
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.32
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.29
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.27
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.27
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.26
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.23
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.2
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.18
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.16
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.16
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.16
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.13
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.1
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.09

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.7e-43  Score=270.43  Aligned_cols=177  Identities=34%  Similarity=0.744  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027292            1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   80 (225)
                      ||++++++.|.    +.+||+|+|++|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|+++|.
T Consensus         1 ms~~~~~~~P~----k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~   76 (216)
T 4dkx_A            1 MSTGGDFGNPL----RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR   76 (216)
T ss_dssp             ----------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred             CCCCCCCCCCC----CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence            77887777652    45899999999999999999999999999999999999999898889999999999999999999


Q ss_pred             hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292           81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                      .++..+++.+|++|+|||+++.++++.+..|+..+......+.|++||+||+|+.+.+.+..++++++++++++.|+++|
T Consensus        77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S  156 (216)
T 4dkx_A           77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS  156 (216)
T ss_dssp             GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred             hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence            99999999999999999999999999999999999888877899999999999998889999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~~~  181 (225)
                      |++|.||+++|+.|++.+...
T Consensus       157 Aktg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          157 AKAGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             TTTTBSHHHHHHHHHHHC---
T ss_pred             CCCCcCHHHHHHHHHHHHHhh
Confidence            999999999999999887654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=240.81  Aligned_cols=211  Identities=55%  Similarity=0.913  Sum_probs=150.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            45788999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887766899999999999987677788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCC--CCCC-CCCCCceee-cCCCCCCCCCCCCCCc
Q 027292          173 TVLTEIFNIVNKKNLTAGEGQG--NGNP-ASLSGKKIL-VPGPAQEIPAKSSMCC  223 (225)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~~~cc  223 (225)
                      +|++.+.+.....+.......+  ...+ ....++++. +....+.+++++++||
T Consensus       169 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (223)
T 3cpj_B          169 ELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC  223 (223)
T ss_dssp             HHHHHHTTCC------------------------CCBCC----------------
T ss_pred             HHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence            9999999887776665422111  1111 111233444 3322333456677898

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=4.4e-36  Score=229.78  Aligned_cols=176  Identities=47%  Similarity=0.825  Sum_probs=161.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            35778999999999999999999999999988888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887766899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 027292          173 TVLTEIFNIVNKKNLT  188 (225)
Q Consensus       173 ~l~~~~~~~~~~~~~~  188 (225)
                      +|.+.+.+........
T Consensus       164 ~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          164 TMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999998877655443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=221.69  Aligned_cols=181  Identities=48%  Similarity=0.797  Sum_probs=161.2

Q ss_pred             CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292            5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS   84 (225)
Q Consensus         5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   84 (225)
                      ++|...+...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++.
T Consensus         4 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   83 (196)
T 3tkl_A            4 GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS   83 (196)
T ss_dssp             -------CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHH
T ss_pred             chhhhcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHH
Confidence            34555566678899999999999999999999999999888889988899888888999999999999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      .+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++
T Consensus        84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  163 (196)
T 3tkl_A           84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA  163 (196)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred             HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999999999999999999999999998887778999999999999887888888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhc
Q 027292          165 TNVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~~~~  185 (225)
                      .|++++|++|.+.+.++....
T Consensus       164 ~gv~~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          164 TNVEQSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             TTHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHHhccc
Confidence            999999999999998875543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.1e-34  Score=218.01  Aligned_cols=179  Identities=49%  Similarity=0.840  Sum_probs=159.2

Q ss_pred             CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292            6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA   85 (225)
Q Consensus         6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   85 (225)
                      ..+.++....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..
T Consensus        10 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   89 (191)
T 2a5j_A           10 HSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS   89 (191)
T ss_dssp             CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH
T ss_pred             cccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH
Confidence            34566677888999999999999999999999999988888888888888888888888999999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      +++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++..+++.++++||+++.
T Consensus        90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (191)
T 2a5j_A           90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC  169 (191)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999999999988776789999999999998767778888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027292          166 NVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~~~  184 (225)
                      |++++|++|++.+.+...+
T Consensus       170 gi~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          170 NVEEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             THHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.3e-34  Score=216.45  Aligned_cols=178  Identities=48%  Similarity=0.805  Sum_probs=161.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      +..++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus         5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   84 (186)
T 2bme_A            5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA   84 (186)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence            45678899999999999999999999999988888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  164 (186)
T 2bme_A           85 GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF  164 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999999999999888776789999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccc
Q 027292          172 MTVLTEIFNIVNKKNLTA  189 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~  189 (225)
                      +++.+.+.+.....+..+
T Consensus       165 ~~l~~~~~~~~~~~~~~~  182 (186)
T 2bme_A          165 VQCARKILNKIESGELDP  182 (186)
T ss_dssp             HHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHhhhcCCCc
Confidence            999999998877666544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.1e-35  Score=223.29  Aligned_cols=174  Identities=37%  Similarity=0.676  Sum_probs=153.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEATNV  167 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  167 (225)
                      +|+|||+++..+++.+..|+..+.....    .+.|+++|+||+|+.+ +....+++..++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999998877653    4789999999999984 5667777888887 66788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 027292          168 ENAFMTVLTEIFNIVNKKNL  187 (225)
Q Consensus       168 ~~~f~~l~~~~~~~~~~~~~  187 (225)
                      +++|++|.+.+.+.....+.
T Consensus       163 ~~l~~~l~~~~~~~~~~~~~  182 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVEL  182 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccc
Confidence            99999999999887765543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=220.43  Aligned_cols=177  Identities=50%  Similarity=0.832  Sum_probs=148.1

Q ss_pred             CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292            6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA   85 (225)
Q Consensus         6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   85 (225)
                      +.+.+++..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..
T Consensus        18 ~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   97 (201)
T 2hup_A           18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQS   97 (201)
T ss_dssp             --------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHH
T ss_pred             CCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence            44566677888999999999999999999999999888778888777887888888888899999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEA  164 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (225)
                      +++.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++++++...++ .++++||+++
T Consensus        98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g  177 (201)
T 2hup_A           98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS  177 (201)
T ss_dssp             HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            999999999999999999999999999999887766899999999999987677888889999999999 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~  182 (225)
                      .|++++|++|++.+.+..
T Consensus       178 ~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          178 SNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             BSHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999998653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.8e-35  Score=218.92  Aligned_cols=174  Identities=45%  Similarity=0.808  Sum_probs=130.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            35788999999999999999999999988877778888888887788888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887666899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027292          173 TVLTEIFNIVNKKN  186 (225)
Q Consensus       173 ~l~~~~~~~~~~~~  186 (225)
                      +|.+.+.+...+..
T Consensus       164 ~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          164 TLARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhccc
Confidence            99999988766544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-34  Score=219.40  Aligned_cols=175  Identities=41%  Similarity=0.766  Sum_probs=158.5

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      ....+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999998888888888888888888888999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      |++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  179 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998877678999999999999876778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027292          171 FMTVLTEIFNIVNKK  185 (225)
Q Consensus       171 f~~l~~~~~~~~~~~  185 (225)
                      |++|++.+.+...+.
T Consensus       180 ~~~l~~~i~~~~~~~  194 (201)
T 2ew1_A          180 FLDLACRLISEARQN  194 (201)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998875543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=8.2e-34  Score=214.33  Aligned_cols=175  Identities=42%  Similarity=0.761  Sum_probs=159.4

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      ..+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+..++..++.
T Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            44556778999999999999999999999999988888888888888888888888999999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      .+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK  173 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999988776689999999999998767778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027292          169 NAFMTVLTEIFNIVN  183 (225)
Q Consensus       169 ~~f~~l~~~~~~~~~  183 (225)
                      ++|++|.+.+.+.++
T Consensus       174 ~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          174 QVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=217.50  Aligned_cols=170  Identities=32%  Similarity=0.526  Sum_probs=150.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999999988777777766554 3556678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887753 579999999999998767788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027292          172 MTVLTEIFNIVN  183 (225)
Q Consensus       172 ~~l~~~~~~~~~  183 (225)
                      ++|++.+.+...
T Consensus       169 ~~l~~~i~~~~~  180 (206)
T 2bov_A          169 FDLMREIRARKM  180 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHccc
Confidence            999999987644

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-34  Score=214.96  Aligned_cols=175  Identities=62%  Similarity=1.010  Sum_probs=158.7

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG   89 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   89 (225)
                      ..+..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   97 (193)
T 2oil_A           18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG   97 (193)
T ss_dssp             --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            34456778999999999999999999999999888888888888888888888899999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      +|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++.++++||+++.|+++
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999999887666899999999999987667788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027292          170 AFMTVLTEIFNIVNK  184 (225)
Q Consensus       170 ~f~~l~~~~~~~~~~  184 (225)
                      +|++|.+.+.+...+
T Consensus       178 l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          178 AFETVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=212.46  Aligned_cols=174  Identities=46%  Similarity=0.757  Sum_probs=156.6

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            45678999999999999999999999999988888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887654 79999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 027292          172 MTVLTEIFNIVNKKN  186 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~  186 (225)
                      ++|.+.+.+...+..
T Consensus       163 ~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          163 NCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999988876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=9.9e-34  Score=211.34  Aligned_cols=169  Identities=51%  Similarity=0.899  Sum_probs=154.6

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34678899999999999999999999999988888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988876789999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          172 MTVLTEIFN  180 (225)
Q Consensus       172 ~~l~~~~~~  180 (225)
                      +++++.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-33  Score=214.37  Aligned_cols=172  Identities=38%  Similarity=0.758  Sum_probs=158.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            46789999999999999999999999998888888888888888888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998877668999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 027292          174 VLTEIFNIVNKK  185 (225)
Q Consensus       174 l~~~~~~~~~~~  185 (225)
                      |.+.+.+.+...
T Consensus       165 l~~~i~~~~~~~  176 (203)
T 1zbd_A          165 LVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999998877654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.1e-33  Score=211.62  Aligned_cols=170  Identities=42%  Similarity=0.753  Sum_probs=153.5

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ......++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            34567899999999999999999999999988888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988876789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          172 MTVLTEIFNI  181 (225)
Q Consensus       172 ~~l~~~~~~~  181 (225)
                      ++|.+.+.+.
T Consensus       167 ~~l~~~~~~~  176 (181)
T 2efe_B          167 YEIARRLPRV  176 (181)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHhc
Confidence            9998877554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.9e-34  Score=216.87  Aligned_cols=177  Identities=49%  Similarity=0.812  Sum_probs=150.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      +..+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34567899999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776789999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccc
Q 027292          172 MTVLTEIFNIVNKKNLT  188 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~  188 (225)
                      ++|++.+.+.....+..
T Consensus       180 ~~l~~~i~~~~~~~~~~  196 (200)
T 2o52_A          180 LKCARTILNKIDSGELD  196 (200)
T ss_dssp             HHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999887766544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.2e-34  Score=214.77  Aligned_cols=174  Identities=37%  Similarity=0.757  Sum_probs=148.4

Q ss_pred             CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292            8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY   87 (225)
Q Consensus         8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   87 (225)
                      +..+++.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++
T Consensus        17 ~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   96 (192)
T 2il1_A           17 RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY   96 (192)
T ss_dssp             -----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred             CCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHh
Confidence            44556678899999999999999999999999988888888888888888888888899999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCC
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATN  166 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  166 (225)
                      +.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..++++.+++.. ++.++++||++|.|
T Consensus        97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A           97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            99999999999999999999999999988877778999999999999876777888888888874 78899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFNI  181 (225)
Q Consensus       167 v~~~f~~l~~~~~~~  181 (225)
                      ++++|++|.+.+.+.
T Consensus       177 i~~l~~~l~~~i~~~  191 (192)
T 2il1_A          177 VDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4e-33  Score=208.48  Aligned_cols=169  Identities=42%  Similarity=0.713  Sum_probs=145.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ..+..++|+|+|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4578899999999999999999999998875 456777778877777778888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776789999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          172 MTVLTEIFNI  181 (225)
Q Consensus       172 ~~l~~~~~~~  181 (225)
                      +++.+.+.+.
T Consensus       166 ~~l~~~~~~~  175 (180)
T 2g6b_A          166 TAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-34  Score=217.93  Aligned_cols=173  Identities=42%  Similarity=0.775  Sum_probs=158.6

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      +...++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            34466889999999999999999999999988888888888888888888888889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      |++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.++..++++++++||++|.|++++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998877678999999999999877788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027292          171 FMTVLTEIFNIVN  183 (225)
Q Consensus       171 f~~l~~~~~~~~~  183 (225)
                      |++|++.+.+...
T Consensus       177 ~~~l~~~i~~~~~  189 (191)
T 3dz8_A          177 FERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-33  Score=210.93  Aligned_cols=174  Identities=40%  Similarity=0.733  Sum_probs=155.0

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      .+.+.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (195)
T 1x3s_A            7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR   86 (195)
T ss_dssp             --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred             CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34445667899999999999999999999999988888888888888888888899999999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      .+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++...+++++++||+++.|+
T Consensus        87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            99999999999999999999999999877653 5799999999999964 566778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027292          168 ENAFMTVLTEIFNIVN  183 (225)
Q Consensus       168 ~~~f~~l~~~~~~~~~  183 (225)
                      +++|++|.+.+.+...
T Consensus       166 ~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          166 QCAFEELVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999876543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.5e-33  Score=209.90  Aligned_cols=173  Identities=39%  Similarity=0.710  Sum_probs=154.6

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE-EEEEEECCE---------EEEEEEEeCCCchhhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ-TRTLVIQHK---------SVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~   82 (225)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+|||||++.+..+
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            5678999999999999999999999999888778888777776 555555554         789999999999999999


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      +..+++.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999887764 58999999999999876677888899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhc
Q 027292          162 LEATNVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~~~~~~  185 (225)
                      +++.|++++|++|.+.+.+...+.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999998876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.3e-33  Score=209.05  Aligned_cols=167  Identities=38%  Similarity=0.703  Sum_probs=145.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999988888888888888877888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988776668999999999999876778888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027292          174 VLTEIFN  180 (225)
Q Consensus       174 l~~~~~~  180 (225)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=6.5e-33  Score=208.07  Aligned_cols=168  Identities=30%  Similarity=0.470  Sum_probs=152.0

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4456789999999999999999999999988888888877666 666778889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC-CCCCHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL-EATNVEN  169 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~  169 (225)
                      ++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++..++++++++||+ ++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            9999999999999999999999887654 3579999999999998878889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027292          170 AFMTVLTEIFN  180 (225)
Q Consensus       170 ~f~~l~~~~~~  180 (225)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=213.82  Aligned_cols=172  Identities=25%  Similarity=0.358  Sum_probs=145.3

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhc
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-VTSAYYR   88 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~   88 (225)
                      .+.+.+..++|+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            334456789999999999999999999986555444555556666667777888999999999999988764 7788899


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      .+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|+
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            99999999999999999999999999877653 47999999999999877778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      +++|+++++.+.+.
T Consensus       176 ~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          176 RELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5.2e-33  Score=205.59  Aligned_cols=164  Identities=45%  Similarity=0.772  Sum_probs=151.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888766689999999999998767778888999999999999999999999999999999


Q ss_pred             HHHH
Q 027292          175 LTEI  178 (225)
Q Consensus       175 ~~~~  178 (225)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3e-33  Score=207.04  Aligned_cols=167  Identities=44%  Similarity=0.794  Sum_probs=145.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999888888888888888777878888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++..+++.+..|+..+......+.|+++|+||+|+.+ +....+++..+++..+++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc-CccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999999888767899999999999943 5667888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027292          175 LTEIFNIV  182 (225)
Q Consensus       175 ~~~~~~~~  182 (225)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-33  Score=212.45  Aligned_cols=171  Identities=42%  Similarity=0.716  Sum_probs=152.8

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG   89 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   89 (225)
                      +.+..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            44567889999999999999999999999998877888888888888888888889999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      +|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|+++
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999999999999888766899999999999987667788889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          170 AFMTVLTEIFN  180 (225)
Q Consensus       170 ~f~~l~~~~~~  180 (225)
                      +|++|.+.+.+
T Consensus       176 l~~~l~~~i~~  186 (192)
T 2fg5_A          176 LFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-32  Score=203.69  Aligned_cols=164  Identities=41%  Similarity=0.717  Sum_probs=151.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+...+....+.+|||||.+.+..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            46799999999999999999999999988888888888888888888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988766789999999999998767778888999999999999999999999999999999


Q ss_pred             HHHH
Q 027292          175 LTEI  178 (225)
Q Consensus       175 ~~~~  178 (225)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=210.71  Aligned_cols=175  Identities=41%  Similarity=0.771  Sum_probs=154.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34567899999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+. .+....++...++..++++++++||+++.|++++|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776689999999999994 35677788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 027292          172 MTVLTEIFNIVNKKNL  187 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~  187 (225)
                      ++|.+.+.+.......
T Consensus       174 ~~l~~~~~~~~~~~~~  189 (213)
T 3cph_A          174 FTLAKLIQEKIDSNKL  189 (213)
T ss_dssp             HHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999887754443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=8.7e-33  Score=206.56  Aligned_cols=171  Identities=29%  Similarity=0.492  Sum_probs=151.5

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      .+....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            34567899999999999999999999999888777787766655 55667888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...++.++++||++|.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            9999999999999999999998885443 458999999999999876778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027292          171 FMTVLTEIFNIVN  183 (225)
Q Consensus       171 f~~l~~~~~~~~~  183 (225)
                      |++|.+.+.+...
T Consensus       163 ~~~l~~~~~~~~~  175 (181)
T 2fn4_A          163 FEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=9.6e-33  Score=204.18  Aligned_cols=163  Identities=42%  Similarity=0.759  Sum_probs=149.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ---RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+.+.   +.+..++...++...+++++++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887678999999999999654   56778888899999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          173 TVLTEI  178 (225)
Q Consensus       173 ~l~~~~  178 (225)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=7.4e-33  Score=207.40  Aligned_cols=168  Identities=29%  Similarity=0.418  Sum_probs=150.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999999888888888877766 66677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ++|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            999999999999999999998876653 5799999999999988788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          173 TVLTEIFNIV  182 (225)
Q Consensus       173 ~l~~~~~~~~  182 (225)
                      ++++.+.+..
T Consensus       162 ~l~~~~~~~~  171 (181)
T 3t5g_A          162 RIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHhc
Confidence            9999887653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.6e-33  Score=215.21  Aligned_cols=174  Identities=40%  Similarity=0.708  Sum_probs=153.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE----------EEEEEEEeCCCchhhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK----------SVKAQIWDTAGQERYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~~   82 (225)
                      ..++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++.          .+.+.+|||||++.+...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            4567899999999999999999999998887777777777777666666655          789999999999999999


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      +..+++.+|++|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.+.+..+++++++..++++++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999999888766553 57999999999999876777888899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcc
Q 027292          162 LEATNVENAFMTVLTEIFNIVNKKN  186 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~~~~~~~  186 (225)
                      +++.|++++|++|.+.+.+.+.+..
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999988766544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.5e-33  Score=204.85  Aligned_cols=165  Identities=36%  Similarity=0.641  Sum_probs=151.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.+....++++.++...+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887776 479999999999998766777888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      .+.+++
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.6e-32  Score=207.17  Aligned_cols=167  Identities=40%  Similarity=0.711  Sum_probs=148.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCCE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-AVTSAYYRGAVG   92 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~   92 (225)
                      ....+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+. .++..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3467999999999999999999999999888888888888888888888889999999999999998 889999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC---CCHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA---TNVE  168 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~  168 (225)
                      +|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++   .++.
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999988776 468999999999999876778888899999999999999999999   9999


Q ss_pred             HHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFN  180 (225)
Q Consensus       169 ~~f~~l~~~~~~  180 (225)
                      ++|++|++.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (189)
T 1z06_A          177 AIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHHHhh
Confidence            999999887643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1e-32  Score=204.23  Aligned_cols=165  Identities=26%  Similarity=0.384  Sum_probs=134.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCCEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-VTSAYYRGAVGAML   95 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~   95 (225)
                      .+||+|+|++|||||||+++|.+......+.++.+.+.....+..++..+.+.+|||||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999999999998877777767767778888888899999999999999998876 67778889999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999887664 479999999999998777888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027292          175 LTEIFNI  181 (225)
Q Consensus       175 ~~~~~~~  181 (225)
                      ++.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.1e-32  Score=205.56  Aligned_cols=166  Identities=36%  Similarity=0.714  Sum_probs=151.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888776689999999999998777778888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      .+.+.+
T Consensus       172 ~~~~~~  177 (179)
T 2y8e_A          172 AAALPG  177 (179)
T ss_dssp             HHTCC-
T ss_pred             HHHHhh
Confidence            876543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=5.4e-32  Score=201.79  Aligned_cols=167  Identities=37%  Similarity=0.676  Sum_probs=147.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35678999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEATNV  167 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  167 (225)
                      +++|||+++..+++.+..|+..+.....    .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999999877654    578999999999998 35677888888887 56788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFN  180 (225)
Q Consensus       168 ~~~f~~l~~~~~~  180 (225)
                      +++|+++++.+++
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=202.37  Aligned_cols=169  Identities=28%  Similarity=0.374  Sum_probs=137.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--hhhhhHhhhcCCCE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--YRAVTSAYYRGAVG   92 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   92 (225)
                      .+.++|+|+|++|||||||+++|.+..+...+. +.+.++....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            357999999999999999999999987765543 456666677777888899999999999987  56677788999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887753 3479999999999998777788888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027292          172 MTVLTEIFNIVNK  184 (225)
Q Consensus       172 ~~l~~~~~~~~~~  184 (225)
                      ++|.+.+.+....
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998776543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=210.84  Aligned_cols=168  Identities=38%  Similarity=0.700  Sum_probs=139.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34567999999999999999999999998877788888888888888888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE------EQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      +|+|||+++..+++.+..|+..+......+.|++||+||+|+.      ..+.+..+++..++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999888776689999999999995      3466778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFN  180 (225)
Q Consensus       167 v~~~f~~l~~~~~~  180 (225)
                      ++++|++|++.+.+
T Consensus       184 v~el~~~l~~~i~~  197 (199)
T 2p5s_A          184 IVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-33  Score=215.56  Aligned_cols=170  Identities=29%  Similarity=0.549  Sum_probs=142.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999988777777776554 345567778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292           95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR--------AVPTEDAKEFAQKEGL-FFLETSALEA  164 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (225)
                      +|||++++.+++.+. .|+..+..... +.|++||+||+|+.+.+        .+..+++..++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 89999887754 89999999999996543        2367788889999996 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcc
Q 027292          165 TNVENAFMTVLTEIFNIVNKKN  186 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~~~~~  186 (225)
                      .|++++|++|++.+.+...+++
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-----
T ss_pred             CCHHHHHHHHHHHHhhhhhhcc
Confidence            9999999999999887654433

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.2e-32  Score=204.50  Aligned_cols=170  Identities=32%  Similarity=0.526  Sum_probs=149.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+||+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999888777777765554 3455677888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....+++.++++.++++++++||+++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999999887764 479999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027292          172 MTVLTEIFNIVN  183 (225)
Q Consensus       172 ~~l~~~~~~~~~  183 (225)
                      ++|.+.+.++..
T Consensus       173 ~~l~~~i~~~~~  184 (187)
T 2a9k_A          173 FDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999987643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=9.7e-33  Score=208.34  Aligned_cols=167  Identities=26%  Similarity=0.434  Sum_probs=142.6

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ......+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..+ ..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3456789999999999999999999999988888888877665 345667888999999999999988875 67899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc-CCCCCH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA-LEATNV  167 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v  167 (225)
                      ++|+|||+++..+++.+..|+..+.....   .+.|++||+||+|+.+.+.+..+++.++++.++++++++|| +++.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            99999999999999999999999877642   48999999999999877778889999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFN  180 (225)
Q Consensus       168 ~~~f~~l~~~~~~  180 (225)
                      +++|++|++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=4.6e-32  Score=204.19  Aligned_cols=167  Identities=18%  Similarity=0.315  Sum_probs=143.6

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG   89 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   89 (225)
                      ........+||+|+|++|||||||+++|+++.+...+.++ . ..+...+.+++..+.+.+|||+|++.+.     +++.
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            3344567899999999999999999999999988777776 3 3344677788999999999999998876     6778


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEeccCCCC
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKEG-LFFLETSALEAT  165 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  165 (225)
                      +|++++|||+++..+++.+..|+..+..... .+.|++||+||+|+.  ..+.+..+++.+++..++ +.|+++||++|.
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            9999999999999999999999999987754 579999999999994  456788889999999997 889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 027292          166 NVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~~  183 (225)
                      |++++|+++++.+.+.++
T Consensus       166 gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             THHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999987754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=209.14  Aligned_cols=164  Identities=27%  Similarity=0.389  Sum_probs=142.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|.+|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            45699999999999999999999998887777777654443 44556788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|||+++..+++.+..|+..+.....  .+.|+++|+||+|+.+ +....+++..++..+++.++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999889888776543  3789999999999976 56677888889999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027292          173 TVLTEIFN  180 (225)
Q Consensus       173 ~l~~~~~~  180 (225)
                      +|++.+.+
T Consensus       164 ~l~~~~~~  171 (199)
T 2gf0_A          164 ELLTLETR  171 (199)
T ss_dssp             HHHHHCSS
T ss_pred             HHHHHHhh
Confidence            99886643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-32  Score=208.88  Aligned_cols=170  Identities=28%  Similarity=0.345  Sum_probs=140.4

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRG   89 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   89 (225)
                      +.....+||+|+|.+|||||||+++|++.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            45567899999999999999999999975432 12233456666677777888999999999999877 55667778889


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|++|+|||+++..+++.+..|+..+.... ..+.|++||+||+|+.+.+.+..++.+.++..++++|+++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999998887643 3479999999999998767778888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|++|++.+...
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=6.7e-33  Score=206.89  Aligned_cols=167  Identities=34%  Similarity=0.534  Sum_probs=147.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4579999999999999999999999888766777777777777777766 678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD--KNIV-IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      |+|||++++.+++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999998877532  2345 8999999999876777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          171 FMTVLTEIFNI  181 (225)
Q Consensus       171 f~~l~~~~~~~  181 (225)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (178)
T 2hxs_A          164 FQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999887544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.6e-32  Score=211.59  Aligned_cols=169  Identities=26%  Similarity=0.449  Sum_probs=145.6

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            445679999999999999999999999999888888877665 3455667788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027292           93 AMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLE  158 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  158 (225)
                      +|+|||+++..+++. +..|+..+..... +.|++||+||+|+.+.            +.+..+++..+++.+++ +|++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 6899999988764 8999999999999753            67888999999999999 8999


Q ss_pred             eccCCCCC-HHHHHHHHHHHHHHHHh
Q 027292          159 TSALEATN-VENAFMTVLTEIFNIVN  183 (225)
Q Consensus       159 ~Sa~~~~~-v~~~f~~l~~~~~~~~~  183 (225)
                      +||++|.| ++++|+++++.+.+...
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCc
Confidence            99999998 99999999999876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.8e-33  Score=210.49  Aligned_cols=169  Identities=28%  Similarity=0.482  Sum_probs=144.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34689999999999999999999999998888888877666 45555667788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999877643 4789999999999987788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027292          173 TVLTEIFNIVN  183 (225)
Q Consensus       173 ~l~~~~~~~~~  183 (225)
                      +|++.+.+...
T Consensus       180 ~l~~~i~~~~~  190 (201)
T 3oes_A          180 KVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHhhhh
Confidence            99999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.1e-31  Score=200.44  Aligned_cols=169  Identities=33%  Similarity=0.548  Sum_probs=146.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999888777776654 444456667888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      +|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....+.+..++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887653 5799999999999985 566788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 027292          174 VLTEIFNIVNKK  185 (225)
Q Consensus       174 l~~~~~~~~~~~  185 (225)
                      |.+.+.+...+.
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999998876654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=8.8e-33  Score=211.19  Aligned_cols=171  Identities=30%  Similarity=0.515  Sum_probs=115.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEECCE--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVIQHK--SVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  776677777776777777777776  89999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEeccCC-CC
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQKEGLFFLETSALE-AT  165 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  165 (225)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..+++.++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988766   6899999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhhc
Q 027292          166 NVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~~~~  185 (225)
                      |++++|++|.+.+.+...+.
T Consensus       178 gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998776644

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.6e-31  Score=203.40  Aligned_cols=165  Identities=37%  Similarity=0.691  Sum_probs=146.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEE-----------------------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS-----------------------------   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   65 (225)
                      +..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999999888888888877777777666544                             


Q ss_pred             --------EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           66 --------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        66 --------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                              ..+.+|||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+.....  .|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                    8899999999999999999999999999999999999999999999999877654  89999999999 444


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      +....+++++++...+++++++||+++.|++++|++|.+.+.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            677888899999999999999999999999999999999988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=7.7e-32  Score=204.28  Aligned_cols=167  Identities=27%  Similarity=0.507  Sum_probs=147.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      .....+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            45678999999999999999999999999887888887666553 56678889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEeccCCCCCHH
Q 027292           93 AMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ--RAVPTEDAKEFAQKEGLF-FLETSALEATNVE  168 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  168 (225)
                      +|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.  +.+..+++.++++.+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 778888876654 7999999999999753  667888999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|++|++.+.+.
T Consensus       177 ~l~~~l~~~i~~~  189 (194)
T 3reg_A          177 EVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.1e-32  Score=203.73  Aligned_cols=170  Identities=36%  Similarity=0.665  Sum_probs=135.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..+ +..+.+.+|||||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            35678999999999999999999999998888888888888877777766 56789999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQ-KEGLFFLETSALEAT  165 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  165 (225)
                      ++|+|||+++..+++.+..|+..+.....    .+.|+++|+||+|+.+ .+.+..+++..++. ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999998877653    5799999999999953 34567788888887 567889999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNIV  182 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~~  182 (225)
                      |++++|++|.+.+++..
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=7e-32  Score=205.52  Aligned_cols=171  Identities=27%  Similarity=0.484  Sum_probs=139.7

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ......++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            4466789999999999999999999999887777777765444 445667888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEE
Q 027292           92 GAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFL  157 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~  157 (225)
                      ++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+            .+.+..+++..++..+++ +++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999986 79998887755 899999999999965            356778888999999887 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          158 ETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       158 ~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      ++||++|.|++++|++|++.+++...+
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccccc
Confidence            999999999999999999999877543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.3e-32  Score=198.91  Aligned_cols=164  Identities=34%  Similarity=0.566  Sum_probs=143.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            368999999999999999999999988777777765554 3455678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....+++..++..++++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999999887764 579999999999998767788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-31  Score=203.29  Aligned_cols=165  Identities=25%  Similarity=0.471  Sum_probs=145.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            456789999999999999999999999988777777766554 3455667788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027292           93 AMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLE  158 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  158 (225)
                      +|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++.+++ .+++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999987 79998887654 7999999999999753            46778889999999998 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      +||++|.|++++|++|++.++
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998876

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=7.4e-32  Score=199.01  Aligned_cols=163  Identities=28%  Similarity=0.390  Sum_probs=123.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|.+...... .++.+.++ ...+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            68999999999999999999987665433 33334444 35567788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887764 35799999999999988788888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          176 TEIFNI  181 (225)
Q Consensus       176 ~~~~~~  181 (225)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=6.9e-32  Score=199.11  Aligned_cols=162  Identities=29%  Similarity=0.516  Sum_probs=143.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999887777777665543 4556677889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999998887764 358999999999999877777888899999887 7899999999999999999999


Q ss_pred             HHHHH
Q 027292          175 LTEIF  179 (225)
Q Consensus       175 ~~~~~  179 (225)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98763

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.3e-31  Score=198.73  Aligned_cols=165  Identities=18%  Similarity=0.333  Sum_probs=138.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|++|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++.     ..+++.+|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            357999999999999999999999998876 66665544 356667788899999999999876     45778899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKE-GLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  168 (225)
                      +|||++++.+++.+..|+..+....   ..+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876665543   2579999999999994  45667888888888876 6889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 027292          169 NAFMTVLTEIFNIVNKKN  186 (225)
Q Consensus       169 ~~f~~l~~~~~~~~~~~~  186 (225)
                      ++|+++++.+.+......
T Consensus       158 ~lf~~l~~~~~~~~~~~~  175 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQQ  175 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999988766543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.4e-31  Score=197.25  Aligned_cols=163  Identities=29%  Similarity=0.497  Sum_probs=145.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988777777765433 56667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....++...++..++++++++||++|.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999988877653 5799999999999987677788888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.7e-35  Score=221.56  Aligned_cols=178  Identities=48%  Similarity=0.805  Sum_probs=146.5

Q ss_pred             CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292            4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT   83 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   83 (225)
                      |..|...+...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+..++
T Consensus        20 G~pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   99 (199)
T 3l0i_B           20 GRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT   99 (199)
T ss_dssp             -----CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS
T ss_pred             CCcccccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence            44566666667889999999999999999999999988888878888888888888888999999999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      ..+++.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++..++++++++||++
T Consensus       100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~  179 (199)
T 3l0i_B          100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN  179 (199)
T ss_dssp             CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC--
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCC
Confidence            99999999999999999999999999999999887777899999999999987666776778889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~  181 (225)
                      +.|++++|++|.+.+.++
T Consensus       180 g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          180 ATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             -HHHHHHHHHHTTTTTTT
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999998776543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-31  Score=201.56  Aligned_cols=166  Identities=31%  Similarity=0.462  Sum_probs=147.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4579999999999999999999999988888888776554 44566788899999999999888 777888999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC-CHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFM  172 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~f~  172 (225)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            99999999999999999998877653 589999999999998767788888999999999999999999999 9999999


Q ss_pred             HHHHHHHHHH
Q 027292          173 TVLTEIFNIV  182 (225)
Q Consensus       173 ~l~~~~~~~~  182 (225)
                      +|++.+.+..
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-31  Score=205.14  Aligned_cols=167  Identities=28%  Similarity=0.514  Sum_probs=143.8

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      ...+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            3456789999999999999999999999998877777776655 345566778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEE
Q 027292           92 GAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEG-LFFL  157 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~  157 (225)
                      ++|+|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+            .+.+..+++..+++.++ +.|+
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  180 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  180 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence            99999999999999998 789988877654 799999999999974            25677888999999888 6899


Q ss_pred             EeccC-CCCCHHHHHHHHHHHHHH
Q 027292          158 ETSAL-EATNVENAFMTVLTEIFN  180 (225)
Q Consensus       158 ~~Sa~-~~~~v~~~f~~l~~~~~~  180 (225)
                      ++||+ ++.|++++|++|++.+++
T Consensus       181 e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          181 ECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHHHHhh
Confidence            99999 689999999999998875

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.7e-31  Score=200.83  Aligned_cols=165  Identities=27%  Similarity=0.511  Sum_probs=143.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            456799999999999999999999999888777777765553 4566677889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEe
Q 027292           94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEG-LFFLET  159 (225)
Q Consensus        94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  159 (225)
                      |+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++.++ ++|+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 789988877654 7999999999999742            5677888999999888 689999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHH
Q 027292          160 SAL-EATNVENAFMTVLTEIFN  180 (225)
Q Consensus       160 Sa~-~~~~v~~~f~~l~~~~~~  180 (225)
                      ||+ ++.|++++|+++++.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=1.8e-30  Score=195.89  Aligned_cols=168  Identities=35%  Similarity=0.540  Sum_probs=136.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      -..++|+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            3569999999999999999999999888777766655443 455667788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      +|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....++++++++.++++++++||+++.|++++|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877654 5799999999999986 566788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027292          174 VLTEIFNIVNK  184 (225)
Q Consensus       174 l~~~~~~~~~~  184 (225)
                      |.+.+.+.+.+
T Consensus       177 l~~~~~~~~~~  187 (190)
T 3con_A          177 LVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99998876443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=3.9e-31  Score=198.48  Aligned_cols=164  Identities=27%  Similarity=0.512  Sum_probs=143.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            579999999999999999999999888777777765444 4456678889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEecc
Q 027292           96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSA  161 (225)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  161 (225)
                      |||+++..+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...+++..++ +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999986 79988887655 8999999999999653            46677888899999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ++|.|++++|+++.+.+++.
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCccCHHHHHHHHHHHHhcc
Confidence            99999999999999887643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.98  E-value=1.7e-30  Score=198.11  Aligned_cols=164  Identities=27%  Similarity=0.486  Sum_probs=144.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            467999999999999999999999998887777777666553 4667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292           95 LVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  160 (225)
                      +|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 678888877654 7999999999999764            45777888899999998 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~~  180 (225)
                      |++|.|++++|++|.+.+++
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.98  E-value=3.8e-31  Score=203.77  Aligned_cols=167  Identities=31%  Similarity=0.510  Sum_probs=125.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777777654443 455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292           95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  160 (225)
                      +|||+++..+++.+. .|+..+..... +.|++||+||+|+...            +.+..+++..+++.+++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 79988877654 7999999999999764            35677888999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 027292          161 ALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      |++|.|++++|++|++.+++...
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999987643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=1.1e-31  Score=207.06  Aligned_cols=172  Identities=26%  Similarity=0.484  Sum_probs=148.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      .....+||+|+|.+|||||||+++|+++.+...+.++.+........... +..+.+.+|||||++.+..++..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            45678999999999999999999999988877777777777776666544 34588999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988877779999999999998777788888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027292          172 MTVLTEIFNIVNK  184 (225)
Q Consensus       172 ~~l~~~~~~~~~~  184 (225)
                      ++|.+.+.+....
T Consensus       167 ~~l~~~~~~~~~~  179 (218)
T 4djt_A          167 LHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHCCTTC
T ss_pred             HHHHHHHhccccc
Confidence            9999998766543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=8.4e-31  Score=194.05  Aligned_cols=162  Identities=27%  Similarity=0.407  Sum_probs=141.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998887777776654443 345567788899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |||++++.+++.+..|+..+.+...  .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888877643  47899999999999876777888888899999999999999999999999999


Q ss_pred             HHHHH
Q 027292          174 VLTEI  178 (225)
Q Consensus       174 l~~~~  178 (225)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=3.2e-30  Score=189.54  Aligned_cols=162  Identities=34%  Similarity=0.589  Sum_probs=142.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999888777766655443 45566778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....++.+++++.++++++++||+++.|++++|+++.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877654 4799999999999986 56677888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=1.1e-31  Score=203.74  Aligned_cols=175  Identities=18%  Similarity=0.281  Sum_probs=130.8

Q ss_pred             CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292            4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV   82 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (225)
                      +.....+..+....++|+|+|.+|||||||+++|++..+.. .+.++.+....  .+  +...+.+.+|||||++.+..+
T Consensus         4 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~   79 (199)
T 4bas_A            4 SHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGL   79 (199)
T ss_dssp             ------------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGG
T ss_pred             cccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHH
Confidence            34445556677889999999999999999999999999887 67777664333  22  345678999999999999999


Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCCCCCHHHHHH-H-----
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--------KNIVIILIGNKSDLEEQRAVPTEDAKE-F-----  148 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~~~~~~~-~-----  148 (225)
                      +..+++.+|++|+|||+++..+++.+..|+..+.....        .+.|++||+||+|+.+..  ..+++.. +     
T Consensus        80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~  157 (199)
T 4bas_A           80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTL  157 (199)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHH
T ss_pred             HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhh
Confidence            99999999999999999999999999999888765522        278999999999997642  2222222 1     


Q ss_pred             HHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          149 AQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      ++..++.++++||+++.|++++|++|.+.+.+...+
T Consensus       158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          158 MGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             HTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             ccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            134677899999999999999999999999877543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=8.7e-30  Score=193.89  Aligned_cols=175  Identities=65%  Similarity=1.079  Sum_probs=153.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|+++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            56899999999999999999999999888888888888888888888999999999999999999988899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.+++++|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999899988876655578999999999998766777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccc
Q 027292          175 LTEIFNIVNKKNLTA  189 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~  189 (225)
                      .+.+.+...+.....
T Consensus       163 ~~~~~~~~~~~~~~~  177 (199)
T 2f9l_A          163 LTEIYRIVSQKQIAD  177 (199)
T ss_dssp             HHHHHHHHHTSCCC-
T ss_pred             HHHHHHHHhhccCCc
Confidence            999988776555433

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=3e-31  Score=205.12  Aligned_cols=170  Identities=29%  Similarity=0.562  Sum_probs=150.5

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      .......+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+..++..+++.+
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34566789999999999999999999888877777778888888888888899999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      |++|+|||+++..+++.+..|+..+..... +.|+++|+||+|+.+... . .+...++...++.++++||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999988764 799999999999976432 2 3566778888999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027292          171 FMTVLTEIFNIVN  183 (225)
Q Consensus       171 f~~l~~~~~~~~~  183 (225)
                      |++|.+.+.....
T Consensus       166 ~~~l~~~l~~~~~  178 (221)
T 3gj0_A          166 FLWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999876644

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2e-31  Score=201.94  Aligned_cols=168  Identities=23%  Similarity=0.293  Sum_probs=137.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------CCcceeeeEEEEE-EECCEEEEEEEEeCCCchhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-----------KATIGVEFQTRTL-VIQHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~   80 (225)
                      ..+..+||+|+|++|||||||++.+.+ .+...+           .++.+.++....+ ..++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            456789999999999999999976654 333332           2344444444333 456678899999999999999


Q ss_pred             hhhHhhhcCCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292           81 AVTSAYYRGAVGAMLVYDIS------RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL  154 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  154 (225)
                      .++..+++.+|++|+|||++      +.++++.+..|+..+.. ...+.|+++|+||+|+.+  ....+++++++..+++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      56677778888877732 335899999999999976  3678889999999999


Q ss_pred             -eEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          155 -FFLETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       155 -~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                       +++++||++|.|++++|++|.+.+.++..+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             899999999999999999999999887653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.6e-30  Score=196.61  Aligned_cols=165  Identities=28%  Similarity=0.471  Sum_probs=138.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            346899999999999999999999998887777776655543 3667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292           95 LVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  160 (225)
                      +|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..++...++...++ .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 678888877654 7999999999999754            45677788889999988 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~~~  181 (225)
                      |++|.|++++|++|.+.+++.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=4.3e-30  Score=194.70  Aligned_cols=168  Identities=28%  Similarity=0.354  Sum_probs=137.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCCE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRGAVG   92 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~   92 (225)
                      ...+||+|+|++|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            45799999999999999999999964321 12223455666667777888999999999999776 55667778889999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|++++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            999999999999999999998887653 3479999999999997666777788888888899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          172 MTVLTEIFNIV  182 (225)
Q Consensus       172 ~~l~~~~~~~~  182 (225)
                      +++++.+....
T Consensus       164 ~~l~~~~~~~~  174 (192)
T 2cjw_A          164 EGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999886554

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=2.7e-31  Score=198.82  Aligned_cols=163  Identities=29%  Similarity=0.559  Sum_probs=126.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            35689999999999999999999998877777666554432 22334566778889999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEeccC
Q 027292           95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRA----------VPTEDAKEFAQKEGL-FFLETSAL  162 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  162 (225)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.          +..+++.+++..+++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 79998887754 899999999999965432          467788889999996 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIF  179 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~  179 (225)
                      +|.|++++|+++++.++
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=2.9e-30  Score=197.34  Aligned_cols=162  Identities=27%  Similarity=0.510  Sum_probs=138.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...+||+|+|.+|||||||+++|..+.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777777754 344455667778889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCCe-EEEec
Q 027292           95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEGLF-FLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~S  160 (225)
                      +|||+++..+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..+++..++. ++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999986 7998888776 489999999999996532            36778888999999864 99999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEI  178 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~  178 (225)
                      |++|.|++++|+++++.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=7.8e-29  Score=187.56  Aligned_cols=171  Identities=66%  Similarity=1.091  Sum_probs=151.6

Q ss_pred             CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292            8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY   87 (225)
Q Consensus         8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   87 (225)
                      +......+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..++
T Consensus        20 ~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~   99 (191)
T 1oix_A           20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY   99 (191)
T ss_dssp             ----CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred             CCcccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence            34444567889999999999999999999999998888889988888888888999999999999999999988888899


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      ..++++++|+|..+..+++.+..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.++
T Consensus       100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v  179 (191)
T 1oix_A          100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV  179 (191)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999888998877665557899999999999876667788899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          168 ENAFMTVLTEI  178 (225)
Q Consensus       168 ~~~f~~l~~~~  178 (225)
                      +++|++|.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.4e-29  Score=190.99  Aligned_cols=166  Identities=19%  Similarity=0.335  Sum_probs=130.3

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      .+.......++|+|+|.+|+|||||+++|+++.+...+.++.+.++..  +.  ...+.+.+|||||++.+..++..++.
T Consensus        14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~   89 (188)
T 1zd9_A           14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCR   89 (188)
T ss_dssp             -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHT
T ss_pred             ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHc
Confidence            344445568999999999999999999999998877777776665543  22  34678899999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccC
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSAL  162 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  162 (225)
                      .+|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..++.++++||+
T Consensus        90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~  167 (188)
T 1zd9_A           90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCK  167 (188)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECC
Confidence            9999999999999999999999988876643 258999999999999753  23333322211     234579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIFN  180 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~  180 (225)
                      +|.|++++|++|.+.+.+
T Consensus       168 ~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          168 EKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TCTTHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999887644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.5e-29  Score=187.51  Aligned_cols=163  Identities=23%  Similarity=0.351  Sum_probs=129.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCc-CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNE-FSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      ......++|+|+|.+|+|||||+++|.+.. +...+.++.+  +....+.++  ++.+.+|||||++.+..++..++..+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence            344567999999999999999999999887 4555566654  334444444  47899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccC
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSAL  162 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  162 (225)
                      |++|+|||+++..+++.+..|+..+.....   .+.|+++|+||+|+.+  ....+++.+...     ..++.++++||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999999999999988876643   4799999999999975  334555655553     235679999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIFN  180 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~  180 (225)
                      ++.|++++|++|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.8e-29  Score=186.96  Aligned_cols=159  Identities=20%  Similarity=0.343  Sum_probs=126.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|.++.+. .+.++.+.  ....+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45699999999999999999999988774 34455443  33344443  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ...++...     +...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999888888776543 2579999999999997632  23333222     22345679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFN  180 (225)
Q Consensus       169 ~~f~~l~~~~~~  180 (225)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1.6e-28  Score=184.54  Aligned_cols=160  Identities=22%  Similarity=0.346  Sum_probs=129.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|.++. ...+.++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 55666665533  3344443  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999989988876653 257999999999999763  23344333322     245679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|+++.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=7.4e-30  Score=187.86  Aligned_cols=156  Identities=21%  Similarity=0.402  Sum_probs=122.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|+|||||+++|.++.+.. +.++.+  +....+.  ...+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887653 455544  2222333  34578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++....     ...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999989988876543 357999999999999753  2333332221     1234569999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          172 MTVLTEIFN  180 (225)
Q Consensus       172 ~~l~~~~~~  180 (225)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=1.9e-28  Score=185.20  Aligned_cols=156  Identities=19%  Similarity=0.263  Sum_probs=126.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|||||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            44679999999999999999999998764 344554443  34455554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEecc
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK------------EGLFFLETSA  161 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  161 (225)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+....            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999998887643 35799999999999975  4556666665432            3467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTE  177 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~  177 (225)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=7.8e-29  Score=188.59  Aligned_cols=155  Identities=21%  Similarity=0.261  Sum_probs=121.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+++|++|||||||+++|.++.+. .+.++.+...  ..+.+++  +.+.+|||||++.+..++..+++.+|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            4579999999999999999999988764 3445544442  3444554  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeEE
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----------------EGLFFL  157 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  157 (225)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++++++..                 .++.++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999998887653 35799999999999975  4566777776542                 345699


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 027292          158 ETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       158 ~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ++||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=6.4e-29  Score=186.25  Aligned_cols=160  Identities=22%  Similarity=0.379  Sum_probs=124.6

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      .......++|+|+|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.+|||||++.+..++..+++.+
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence            34455689999999999999999999999877 44455555443  2333433  7899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCC
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEA  164 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~  164 (225)
                      |++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+..     ...++.++++||++|
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999999999988876653 357999999999999752  3444444433     223457999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTE  177 (225)
Q Consensus       165 ~~v~~~f~~l~~~  177 (225)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.1e-28  Score=183.31  Aligned_cols=160  Identities=22%  Similarity=0.376  Sum_probs=125.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|.+|||||||+++|.++.+. .+.++.+...  ..+.++  .+.+.+|||||++.+..++..++..+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988776 4555544333  333443  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|+++.++++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+...     ..++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887653 24799999999999975  234455544432     245679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|++|++.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.6e-29  Score=190.10  Aligned_cols=164  Identities=21%  Similarity=0.442  Sum_probs=121.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVI---QHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      .+||+|+|++|||||||+++|++.  .+...+.++.+.++....+..   ++..+.+.+|||+|++.|..++..+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444456677666666554433   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEeccCC
Q 027292           92 GAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP---TEDAKEFAQKEGLF----FLETSALE  163 (225)
Q Consensus        92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  163 (225)
                      ++++|||+++. .+++.+..|+..+..... +.|+++|+||+|+.+.+...   .+....++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999986 578899999998876643 78999999999997532211   12334555566776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHH
Q 027292          164 AT-NVENAFMTVLTEIFNI  181 (225)
Q Consensus       164 ~~-~v~~~f~~l~~~~~~~  181 (225)
                      +. ++.++++.+.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 8999999888877554

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=3.1e-28  Score=182.69  Aligned_cols=160  Identities=23%  Similarity=0.351  Sum_probs=123.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|||||||+++|.+..+. .+.++.+.  ....+..+  .+.+.+|||||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45799999999999999999999987542 33444443  23334444  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..+++....     ...++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999988888765442 3579999999999997633  233333221     1234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|+++++.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.3e-27  Score=195.13  Aligned_cols=163  Identities=28%  Similarity=0.512  Sum_probs=143.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            468999999999999999999999888777777765444 4556678889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEecc
Q 027292           96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSA  161 (225)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  161 (225)
                      |||+++..+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999886 78888877665 8999999999999653            56778889999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027292          162 LEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       162 ~~~~~v~~~f~~l~~~~~~  180 (225)
                      ++|.|++++|++|++.+++
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=4.1e-29  Score=189.74  Aligned_cols=165  Identities=20%  Similarity=0.224  Sum_probs=121.3

Q ss_pred             CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE--E-CCEEEEEEEEeCCCchhhhhhh--
Q 027292            9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV--I-QHKSVKAQIWDTAGQERYRAVT--   83 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~Dt~G~~~~~~~~--   83 (225)
                      ....+....+||+|+|++|||||||++++.+... ..  ++.+.++......  + ++..+.+.+|||+|++.|....  
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   88 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD   88 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence            4445677899999999999999999998877432 22  3333333332222  2 2566889999999999987776  


Q ss_pred             -HhhhcCCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHH---
Q 027292           84 -SAYYRGAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ-------RAVPTEDAKEFAQ---  150 (225)
Q Consensus        84 -~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------~~~~~~~~~~~~~---  150 (225)
                       ..+++.+|++|+|||+++.  +++..+..|+..+.... .+.|++||+||+|+...       +.+..+....+++   
T Consensus        89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence             8899999999999999986  67777777777765443 48999999999998641       2333444566777   


Q ss_pred             -HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          151 -KEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       151 -~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                       ..++.|+++||++ .|++++|+.+++.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             6778899999999 99999999998865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=4.2e-29  Score=189.18  Aligned_cols=158  Identities=21%  Similarity=0.408  Sum_probs=119.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|||||||+++|..+.+. .+.++.+  +....+..  ..+.+.+|||||++.+..++..+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988764 3344433  33333333  4478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++....     ...+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999999988876543 247999999999999753  2333332221     1234569999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          169 NAFMTVLTEIF  179 (225)
Q Consensus       169 ~~f~~l~~~~~  179 (225)
                      ++|++|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=4.3e-28  Score=181.58  Aligned_cols=160  Identities=19%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|||||||+++|.++.+ ..+.++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999998776 4445555533  3334443  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----EGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+....     .+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988876654 357999999999999753  334444443321     23469999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.1e-30  Score=199.41  Aligned_cols=163  Identities=28%  Similarity=0.524  Sum_probs=136.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998887766666654433 334455667788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEec
Q 027292           95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEGL-FFLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  160 (225)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+..            .+..+++..+++.+++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 78888776554 79999999999997532            4455667778888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~  179 (225)
                      |++|.|++++|++|++.++
T Consensus       186 A~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAVL  204 (204)
Confidence            9999999999999987653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=6.7e-29  Score=187.22  Aligned_cols=160  Identities=19%  Similarity=0.312  Sum_probs=126.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+|+|++|+|||||+++|..+.+.. +.++.+..  ...+..+  ...+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 44554433  3334343  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ..+++....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888888776543 2579999999999997632  223333221     2234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNI  181 (225)
Q Consensus       169 ~~f~~l~~~~~~~  181 (225)
                      ++|+++.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.9e-27  Score=174.73  Aligned_cols=153  Identities=17%  Similarity=0.202  Sum_probs=115.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc--
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR--   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   88 (225)
                      .++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||++.+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998776555555545555555555544  578999999988764      34455554  


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      .+|++++|+|+.+.+   ....|+..+.+.   +.|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            899999999998754   344577776553   789999999999865333332 3677888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.5e-26  Score=179.68  Aligned_cols=168  Identities=20%  Similarity=0.152  Sum_probs=119.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc------hh----hhhhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ------ER----YRAVT   83 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~----~~~~~   83 (225)
                      ....++|+|+|.+|||||||+++|++..+.....+..+.+.........  ...+.+|||||.      +.    +.. +
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~  102 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-I  102 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-H
Confidence            3567999999999999999999999987653332222233333222222  367899999998      33    222 3


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeE
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE---DAKEFAQKEG--LFF  156 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~  156 (225)
                      ..++..+|++|+|||+++..+++.  ...|+..+.... .+.|+++|+||+|+.+.+.+..+   ....++...+  +.+
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            345788999999999999877642  235555555432 37999999999999876666554   4556677776  789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHHhhc
Q 027292          157 LETSALEATNVENAFMTVLTEIFNIVNKK  185 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~  185 (225)
                      +++||++|.|++++|++|.+.+.+.....
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998776543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2e-27  Score=182.63  Aligned_cols=159  Identities=14%  Similarity=0.191  Sum_probs=113.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE-EEEEEEEeCCCchhhhh-hhHhhhcCCC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK-SVKAQIWDTAGQERYRA-VTSAYYRGAV   91 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d   91 (225)
                      ....++|+|+|++|+|||||+++|++..+...+.++ +.++..  +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            345789999999999999999999998876666543 333332  444433 68899999999999988 7888999999


Q ss_pred             EEEEEEeCCChh-hHHhHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH---H-------------
Q 027292           92 GAMLVYDISRRQ-SFDHIPR-WLEELRSH--ADKNIVIILIGNKSDLEEQRAVPTEDAK-EFA---Q-------------  150 (225)
Q Consensus        92 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~---~-------------  150 (225)
                      ++|+|||+++.. ++..... |...+...  ...+.|+++|+||+|+.+...  .+... .+.   .             
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence            999999999853 4555544 44444432  234799999999999976432  11111 111   1             


Q ss_pred             --------------------Hc--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 027292          151 --------------------KE--GLFFLETSALEA------TNVENAFMTVLTE  177 (225)
Q Consensus       151 --------------------~~--~~~~~~~Sa~~~------~~v~~~f~~l~~~  177 (225)
                                          .+  ++.|+++||++|      .|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                11  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.4e-28  Score=194.28  Aligned_cols=169  Identities=28%  Similarity=0.393  Sum_probs=124.8

Q ss_pred             CCCCCCceeeeEEEEcCC---------CCCHHHHHHHHhc---CcCCCCCCCcc-eeeeEEEEE--------------EE
Q 027292            9 DPNQKIDYVFKVVLIGDS---------AVGKSQILARFAR---NEFSLDSKATI-GVEFQTRTL--------------VI   61 (225)
Q Consensus         9 ~~~~~~~~~~~I~vlG~~---------g~GKSsLi~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~   61 (225)
                      ..+......+||+|+|.+         |||||||+++|++   ..+...+.+++ +.++....+              ..
T Consensus        11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (255)
T 3c5h_A           11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE   90 (255)
T ss_dssp             CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred             cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence            344456778999999999         9999999999999   55555555553 233221111              13


Q ss_pred             CCEEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCCEEEEEE
Q 027292           62 QHKSVKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GAVGAMLVY   97 (225)
Q Consensus        62 ~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~   97 (225)
                      ++..+.+.+||                       ++|++.|..++..++.                     ++|++|+||
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            45678899999                       5566666666666666                     799999999


Q ss_pred             eCCCh--hhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHHHH
Q 027292           98 DISRR--QSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        98 d~~~~--~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |++++  .+++.+..|+..+... ...+.|++||+||+|+.+.+.+  +++++++.. .+++++++||+++.|++++|++
T Consensus       171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence            99998  8999999999988766 3357999999999999753332  566677766 4789999999999999999999


Q ss_pred             HHHHHH
Q 027292          174 VLTEIF  179 (225)
Q Consensus       174 l~~~~~  179 (225)
                      |++.+.
T Consensus       249 l~~~l~  254 (255)
T 3c5h_A          249 LVQLID  254 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=7.3e-27  Score=174.01  Aligned_cols=160  Identities=17%  Similarity=0.176  Sum_probs=121.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++.  .+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            356789999999999999999999998887777666665665555555553  567999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEeccCCC
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-------G--LFFLETSALEA  164 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  164 (225)
                      |+|+|+++......    +..+......+.|+++|+||+|+.+.   ..+.........       +  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999987432222    22222223347899999999999753   233333333322       2  47999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~~~~  182 (225)
                      .|++++|++|++.+....
T Consensus       156 ~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhhhhhc
Confidence            999999999998876653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=2.7e-26  Score=185.85  Aligned_cols=159  Identities=21%  Similarity=0.321  Sum_probs=125.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-----hhhhHhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-----RAVTSAYY   87 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   87 (225)
                      ..+||+|+|.+|||||||+++|+++....   .+.+|.+..+.  .+.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            46899999999999999999998874332   33444444433  344433 688999999999988     67888899


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEE--QRA----VPTEDAKEFAQKEG---LFF  156 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  156 (225)
                      +.+|++|+|||+++..+++.+..|...+....  ..+.|+++|+||+|+.+  .+.    ...+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999998877765554432  34799999999999976  332    44467788888887   689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +++||++ .++.++|..+++.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 88999998887754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=1.1e-26  Score=174.92  Aligned_cols=159  Identities=19%  Similarity=0.230  Sum_probs=118.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhhHh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG-----------QERYRAVTSA   85 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~   85 (225)
                      .++|+|+|++|||||||+++|.+..+...+.++.+..  ...+...    .+.+|||||           ++.+...+..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            3799999999999999999999988776666654333  3333333    688999999           6778888777


Q ss_pred             hhcC-CCEEEEEEeCCChhhHHhH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292           86 YYRG-AVGAMLVYDISRRQSFDHI-PRWLEE--------L-RSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL  154 (225)
Q Consensus        86 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  154 (225)
                      +++. ++++++|+++.+..++..+ ..|...        + ......+.|+++|+||+|+.+..   .+..++++..+++
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~  151 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence            7776 6666666666666666665 566542        2 22223479999999999997643   5667888888886


Q ss_pred             e-------EEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          155 F-------FLETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       155 ~-------~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      +       ++++||++|.|++++|+++.+.+.+...+
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence            4       79999999999999999999998776544

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.6e-26  Score=186.68  Aligned_cols=158  Identities=20%  Similarity=0.360  Sum_probs=118.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|.+|||||||+++|.+..+.... ++.+..+  ..+.  ...+.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999988764332 4433333  2232  345789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |||+++..+++.+..|+..+.... ..+.|++||+||+|+.+..  ..+++.....     ..+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999888877765543 3589999999999997633  2333332221     1245699999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          170 AFMTVLTEIFN  180 (225)
Q Consensus       170 ~f~~l~~~~~~  180 (225)
                      +|++|++.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=5.9e-26  Score=171.69  Aligned_cols=159  Identities=16%  Similarity=0.191  Sum_probs=109.0

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   82 (225)
                      +....++|+|+|.+|+|||||+++|++..+...+.++.+.+........+.   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            345789999999999999999999999875555555544444444444433   589999999          7788888


Q ss_pred             hHhhhcCC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeE
Q 027292           83 TSAYYRGA---VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT--EDAKE-FAQKEGLFF  156 (225)
Q Consensus        83 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~  156 (225)
                      +..++..+   |++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.+......  +++.+ +....++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88888776   9999999999876655432 2222222   3789999999999976433221  12222 222345789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +++||+++.|++++|++|.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=5.8e-26  Score=170.76  Aligned_cols=157  Identities=17%  Similarity=0.193  Sum_probs=122.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR-   88 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   88 (225)
                      ..++|+|+|++|||||||+++|++..+.....++.+.+.....+..++  ..+.+|||||++.+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999998766555555555555555555543  678999999988764      34555554 


Q ss_pred             -CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           89 -GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        89 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                       .+|++++|+|..+   ++....|+..+..   .+.|+++|+||+|+.....+. .....+++.++++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999875   4555677777655   378999999999996543333 3567788888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      +++|+++++.+...
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999877543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=1e-25  Score=165.02  Aligned_cols=150  Identities=17%  Similarity=0.182  Sum_probs=105.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG   89 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   89 (225)
                      +||+|+|++|+|||||+++|.+..+. ....++.+.+.....+..++.  .+.+|||||.+.       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988754 223333344444445555443  788999999876       45566778899


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE  168 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  168 (225)
                      +|++|+|+|+++..+..  ..|+..+...  .+.|+++|+||+|+.+..    +++.+++ .+++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999999753322  2222222222  378999999999997531    3334444 5677 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=7.1e-27  Score=188.36  Aligned_cols=158  Identities=17%  Similarity=0.217  Sum_probs=118.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh---hhHhhhcCCCE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA---VTSAYYRGAVG   92 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   92 (225)
                      ||+++|+.|||||||++++.+.-++.   ...+|.+.++..  +   +..+.+++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   245666666543  2   2347899999999999964   46889999999


Q ss_pred             EEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEe
Q 027292           93 AMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ-------RAVPTEDAKEFAQK----EGLFFLET  159 (225)
Q Consensus        93 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  159 (225)
                      +|+|||+++.  +....+..|+..+.... .+.|+++++||+|+..+       +.+..++++++++.    .++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  33333444455554443 48999999999999753       23444555666664    57889999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          160 SALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      ||++ .+|.++|..+++.+.....
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 5899999999887755444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=7.8e-26  Score=168.26  Aligned_cols=153  Identities=19%  Similarity=0.212  Sum_probs=113.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------h--hHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------V--TSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~   86 (225)
                      ..++|+|+|.+|+|||||+++|.+.... ....++.+.++....+..++.  .+.+|||||.+.+..      .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987643 233344445555566666553  478999999764211      1  1235


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      ++.+|++++|+|+++..+++ ...|+..+.+....+.|+++|+||+|+.+...       .++...+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999887765 45788877776656799999999999964211       11222466799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEI  178 (225)
Q Consensus       167 v~~~f~~l~~~~  178 (225)
                      ++++|++|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3.1e-25  Score=175.33  Aligned_cols=156  Identities=18%  Similarity=0.163  Sum_probs=119.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh-
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYY-   87 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-   87 (225)
                      ...++|+|+|.+|||||||+++|++..+.....+..+.+.....+..  ....+.+|||||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            35789999999999999999999997765555555444444444443  347899999999877654      234454 


Q ss_pred             -cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           88 -RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        88 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                       ..+|++|+|+|+++.+..   ..|...+.+.   +.|+++|+||+|+.+.+... ....++++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999986543   3466555543   79999999999996544443 236788888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIF  179 (225)
Q Consensus       167 v~~~f~~l~~~~~  179 (225)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=5.5e-26  Score=196.90  Aligned_cols=164  Identities=21%  Similarity=0.252  Sum_probs=126.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE--------EECCEEEEEEEEeCCCchhhhhhhHh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL--------VIQHKSVKAQIWDTAGQERYRAVTSA   85 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~Dt~G~~~~~~~~~~   85 (225)
                      ....+||+|+|.+|||||||+++|.+..+...+.++.+.++.....        ..++..+.+.+|||||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4567999999999999999999999998887777887776665421        11234678999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                      +++.+|++|+|+|+++.   +.+..|+..+..... +.|+++|+||+|+.+.+.+..+.+++++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999998754   567889999888765 79999999999998877778888888888899999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTEIFNI  181 (225)
Q Consensus       166 ~v~~~f~~l~~~~~~~  181 (225)
                      |++++|+.+.+.+.+.
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2.2e-25  Score=177.24  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=116.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR-   88 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   88 (225)
                      +.++|+++|.+|||||||+++|++........+.  ++.......+.. ...+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            4689999999999999999999987654444444  333333444455 6789999999988765      34555665 


Q ss_pred             -CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           89 -GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        89 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                       .+|++|+|+|+++.+.   ...|...+.+   .+.|+++|+||+|+.....+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             6999999999987544   3456666655   379999999999996533333 3467788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          168 ENAFMTVLTEI  178 (225)
Q Consensus       168 ~~~f~~l~~~~  178 (225)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=1.9e-24  Score=175.03  Aligned_cols=162  Identities=18%  Similarity=0.119  Sum_probs=123.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-ceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKAT-IGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRA   81 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~   81 (225)
                      +..+.-.|+|+|.+|||||||+|+|++..+....... ++.......... .....+.||||||...          +..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            5667889999999999999999999998876433322 222222222222 2267899999999743          335


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEe
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLET  159 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~  159 (225)
                      ....++..+|++++|+|+++..+......|+..+...   +.|+++|+||+|+.+......+....+...++  ..++++
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            6677889999999999999987777777777777653   78999999999997434555666777777775  679999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027292          160 SALEATNVENAFMTVLTEI  178 (225)
Q Consensus       160 Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ||++|.|++++|+++.+.+
T Consensus       162 SA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          162 SALKGANLDELVKTILKYL  180 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHS
T ss_pred             eCCCCCCHHHHHHHHHHhC
Confidence            9999999999999998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=1.5e-24  Score=163.68  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=113.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRA   81 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   81 (225)
                      .+....++|+|+|.+|+|||||+++|++.... ...++.+.+........+   ..+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHH
Confidence            34567789999999999999999999998743 333333444443333332   2477999999          677777


Q ss_pred             hhHhhhcCC---CEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC-
Q 027292           82 VTSAYYRGA---VGAMLVYDISRRQSF--DHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG-  153 (225)
Q Consensus        82 ~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-  153 (225)
                      ++..+++.+   |++++|+|+.+..+.  ..+..|+...      +.|+++|+||+|+.+...  ...++++.++...+ 
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            777777665   999999998875332  2333444332      789999999999975322  22234555555534 


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          154 LFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       154 ~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ++++++||+++.|++++|+++.+.+.+
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            689999999999999999999987643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.9e-25  Score=176.29  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA----------VTSAYY   87 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   87 (225)
                      .+|+|+|.+|||||||+|+|.+........++.+.+.....+...+.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            58999999999999999999998766666666666666666666554  789999999876653          455566


Q ss_pred             --cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292           88 --RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT  165 (225)
Q Consensus        88 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (225)
                        ..+|++|+|+|+++.+....+..|   +.   ..+.|+++|+||+|+.+..... .....+...++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986554443333   32   2379999999999986533322 23556778889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTE  177 (225)
Q Consensus       166 ~v~~~f~~l~~~  177 (225)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=2.5e-25  Score=171.33  Aligned_cols=146  Identities=15%  Similarity=0.270  Sum_probs=106.7

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR   88 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (225)
                      ......++|+|+|++|+|||||+++|.+..+..   .+.++.+..+         ....+.+|||||++.+...+..++.
T Consensus         7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~   77 (218)
T 1nrj_B            7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLK   77 (218)
T ss_dssp             ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred             CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHH
Confidence            345678999999999999999999999987644   2333322222         4457889999999999888888887


Q ss_pred             C----CCEEEEEEeCC-ChhhHHhHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHHcC
Q 027292           89 G----AVGAMLVYDIS-RRQSFDHIPRWLEELRSH----ADKNIVIILIGNKSDLEEQRAVP------TEDAKEFAQKEG  153 (225)
Q Consensus        89 ~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~~~  153 (225)
                      .    +|++|+|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.......      .+++..++...+
T Consensus        78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~  157 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK  157 (218)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            7    89999999999 888888888888877654    33589999999999998754433      344566677777


Q ss_pred             CeEEEeccCCCCC
Q 027292          154 LFFLETSALEATN  166 (225)
Q Consensus       154 ~~~~~~Sa~~~~~  166 (225)
                      +.++++|++++.+
T Consensus       158 ~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          158 KSLNEVERKINEE  170 (218)
T ss_dssp             HHHHC--------
T ss_pred             ccccccccccccc
Confidence            8899999998875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=3.3e-24  Score=170.72  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--c
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYY--R   88 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~   88 (225)
                      .++|+|+|++|+|||||+++|++..+.....++.+.+.....+...+.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999998775556666666666655555443  589999999887655      455555  6


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      .+|++|+|+|+++.+   ....|+..+.+..  ..|+++|+||+|+.+....... ...+.+.++++++++||++|.|+.
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            899999999998753   3334444444431  2899999999998543222222 677788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          169 NAFMTVLTEIF  179 (225)
Q Consensus       169 ~~f~~l~~~~~  179 (225)
                      ++|+++.+.+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=2.2e-24  Score=166.53  Aligned_cols=165  Identities=16%  Similarity=0.131  Sum_probs=110.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCC----------chhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAG----------QERYRA   81 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~~   81 (225)
                      +....++|+|+|.+|+|||||+++|++...........+++......... .....+.+|||||          .+.+..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            44567999999999999999999999986321222222233333333333 4456789999999          455566


Q ss_pred             hhHhhhcC---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHH-----
Q 027292           82 VTSAYYRG---AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQK-----  151 (225)
Q Consensus        82 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~-----  151 (225)
                      +...++..   +|++|+|+|+.+..+. ....|+..+..   .+.|+++|+||+|+.+.....  .+...+....     
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            66666655   7889999999874332 22344444443   378999999999997532211  1122222222     


Q ss_pred             --cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          152 --EGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       152 --~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                        .+++++++||++|.|++++|++|.+.+...
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence              456799999999999999999999887544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.1e-24  Score=173.70  Aligned_cols=153  Identities=15%  Similarity=0.154  Sum_probs=114.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA----------VTSAY   86 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   86 (225)
                      .++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||...+..          ....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999876555566655555555555433  5678999999877652          22233


Q ss_pred             h--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292           87 Y--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA  164 (225)
Q Consensus        87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (225)
                      +  ..+|++|+|+|+++.+....   |...+.+.   +.|+++|+||+|+.+..... .....+...++++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  79999999999998655443   34444433   79999999999986533222 2356778888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      .|++++|+++.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999887644

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.9e-24  Score=181.15  Aligned_cols=166  Identities=16%  Similarity=0.153  Sum_probs=118.1

Q ss_pred             CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-
Q 027292            5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-   82 (225)
Q Consensus         5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-   82 (225)
                      ..|+....+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+...+. ..+.+|||||++.+..+ 
T Consensus        22 ~~msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~  100 (423)
T 3qq5_A           22 RRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELG  100 (423)
T ss_dssp             --CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTC
T ss_pred             hhCccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchh
Confidence            345555556778899999999999999999999988763 233344445555555555443 37899999998876544 


Q ss_pred             ------hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE
Q 027292           83 ------TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFF  156 (225)
Q Consensus        83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  156 (225)
                            ...++..+|++|+|+|+...   +....|+..+.+.   +.|+++|+||+|+.+....  +..++++..+++++
T Consensus       101 ~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v  172 (423)
T 3qq5_A          101 RLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKV  172 (423)
T ss_dssp             CCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCC
T ss_pred             HHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCE
Confidence                  34578899999999998322   3345677777665   7999999999999875443  55667777788999


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      +++||++|.|++++|++|.+.+.
T Consensus       173 ~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          173 LLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhhh
Confidence            99999999999999999988773

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=2.3e-23  Score=176.22  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=116.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhhh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAVT   83 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   83 (225)
                      +..++|+|+|.+|||||||+|+|++.... ....++++.+.....+..++.  .+.+|||||+          +.|..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45799999999999999999999987754 333344444444444445544  5889999997          5565554


Q ss_pred             H-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 027292           84 S-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFAQK----EGLFFL  157 (225)
Q Consensus        84 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  157 (225)
                      . .+++.+|++|+|+|+++..+.+.. .|+..+..   .+.|+++|+||+|+.+......++.. .+...    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 478899999999999987776654 57666654   37999999999999875554433332 22333    367899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHH
Q 027292          158 ETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       158 ~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=4.5e-23  Score=175.37  Aligned_cols=164  Identities=18%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRAV   82 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   82 (225)
                      .+..++|+++|.+|+|||||+++|.+... .....++++.+.....+..++.  .+.+|||||          ++.|..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            45679999999999999999999997653 2333444444444444445444  788999999          6777766


Q ss_pred             hH-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027292           83 TS-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFF  156 (225)
Q Consensus        83 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~  156 (225)
                      .. .+++.+|++|+|+|+++..+ +....|+..+.+   .+.|+++|+||+|+.+.+....+++.+.+...     .+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            55 37889999999999987433 223455555554   37999999999999876666666666666554     5789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          157 LETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      +++||++|.|++++|+++.+.+.+...
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999988766543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.4e-22  Score=165.91  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=120.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---------AVTSA   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   85 (225)
                      ...++|+|+|.+|||||||+++|.+........+..+.......+...  ...+.+|||||...+.         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876433222222233333333222  4578999999974321         12223


Q ss_pred             hhcCCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292           86 YYRGAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                      +...+|++++|+|+++..  +++....|+..+..... +.|+++|+||+|+.....  .++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            456799999999998876  67777888888877655 799999999999975322  2445566677888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~~~  182 (225)
                      |.|++++|+++.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=9.7e-23  Score=173.37  Aligned_cols=157  Identities=15%  Similarity=0.142  Sum_probs=98.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT--------SAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   86 (225)
                      ..++|+|+|.+|+|||||+|+|.+.... ....+.++.+.....+..++  +.+.+|||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3588999999999999999999987543 33344444455444555544  579999999987765443        336


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      +..+|++|+|+|+++..+++.+..+...+... . +.|+++|+||+|+......   ..+.+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            78999999999999988776544444333333 2 7999999999999764322   22334443236799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIF  179 (225)
Q Consensus       167 v~~~f~~l~~~~~  179 (225)
                      ++++|++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=3.2e-22  Score=161.30  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=107.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   86 (225)
                      ...+|+|+|.+|+|||||+|+|++..+.... .+.++.......  .......+.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            4567999999999999999999998775432 222222211111  223456899999999765        45566678


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-C-CeEEEeccCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWL-EELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-G-LFFLETSALE  163 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~  163 (225)
                      ++.+|++++|+|+++..+..  ..|+ ..+.... .+.|+++|+||+|+.....    ........+ + ..++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            89999999999998764432  3444 3444432 3799999999999975321    022333332 3 4689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEI  178 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~  178 (225)
                      |.|++++|+++.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999887644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=9.8e-23  Score=166.61  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=117.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHhhh---cCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVTSAYY---RGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~   90 (225)
                      .+|+|+|.++||||||+++|.+........+.++.......+.+++ ...+.+|||||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4789999999999999999998754333322222333333343332 24789999999643    233434444   459


Q ss_pred             CEEEEEEeCCC---hhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccCC
Q 027292           91 VGAMLVYDISR---RQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSALE  163 (225)
Q Consensus        91 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  163 (225)
                      |++|+|+|+++   ..+++.+..|+.++..+..  .+.|+++|+||+|+...    .+...++.+.++  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788889999999987753  47999999999998752    244566777766  6799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFN  180 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~  180 (225)
                      +.|++++|++|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999887743

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=3e-21  Score=161.77  Aligned_cols=160  Identities=16%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE-------------------E---ECCEEEEEEE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL-------------------V---IQHKSVKAQI   70 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l   70 (225)
                      .....++|+++|++++|||||+++|.+........    ........                   .   .......+.+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----ccccceeeccccccccceecccccccccccccccccceEEE
Confidence            35567999999999999999999998754322111    00000000                   0   0123378999


Q ss_pred             EeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHH
Q 027292           71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEF  148 (225)
Q Consensus        71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~  148 (225)
                      |||||++.|......++..+|++|+|+|+++..+..+...|+..+....  ..|+++|+||+|+.+....  ..+++.++
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998776677777777665542  2589999999999753211  11122222


Q ss_pred             HHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          149 AQKE---GLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       149 ~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ....   +++++++||++|.|++++|++|.+.+
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2222   56799999999999999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=9e-22  Score=153.75  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=104.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCc-----------hhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQ-----------ERY   79 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~   79 (225)
                      +....++|+|+|.+|+|||||+++|++..+.....+  +.+...........  +..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHH
Confidence            455689999999999999999999999887666555  33333333333343  357889999993           344


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVP------TEDAKEFAQK  151 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~  151 (225)
                      ...+...++.+|++|+|+|+++....  ...|+..+.....  ...|+++|+||+|+.+...+.      .+.++.+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            45555566789999999998764331  1233333322211  246999999999986543322      2357778888


Q ss_pred             cCCeEEEeccCCC-----CCHHHHHHHHHHHHHH
Q 027292          152 EGLFFLETSALEA-----TNVENAFMTVLTEIFN  180 (225)
Q Consensus       152 ~~~~~~~~Sa~~~-----~~v~~~f~~l~~~~~~  180 (225)
                      .+..++.++...+     .++.++|+.+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888888876644     5777777766665543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=5.8e-21  Score=160.25  Aligned_cols=159  Identities=19%  Similarity=0.201  Sum_probs=104.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCc---CCCCCCC--cceeeeEEEEEEE-------------C--C----EEEEEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNE---FSLDSKA--TIGVEFQTRTLVI-------------Q--H----KSVKAQ   69 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   69 (225)
                      ....++|+++|+.++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   3333333  3333333322211             1  1    237899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHH
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTE  143 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~  143 (225)
                      +|||||++.|.......+..+|++|+|+|+++.    ++.+.+.    .+... . ..|+++++||+|+.+...  ...+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999998888888899999999999953    3443332    22222 1 357999999999976443  2345


Q ss_pred             HHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          144 DAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       144 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ++.+++..   .+++++++||++|.|+++++++|.+.+
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            56666654   357899999999999999999988654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=4e-22  Score=157.63  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=105.6

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCc-ceeeeEEEEEEECCEEEEEEEEeCCCchhhhh---------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKAT-IGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA---------   81 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------   81 (225)
                      +....++|+|+|++|+|||||+++|++... .....++ .+...........  +..+.+|||||...+..         
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            455679999999999999999999998773 3333333 3333333333333  35789999999765422         


Q ss_pred             --hhHhhhcCCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027292           82 --VTSAYYRGAVGAMLVYDISRRQSF-DHIPRWLEELRSHADKNIVIILIGN-KSDLEEQRAVPT-------EDAKEFAQ  150 (225)
Q Consensus        82 --~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~~~~~~-------~~~~~~~~  150 (225)
                        ....+++.+|++|+|+|+.+.... ..+..|+..+.... ...|.++++| |+|+... ....       ..++.+..
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence              223367899999999999862221 22223333332211 1346666666 9999742 2111       22444666


Q ss_pred             HcCCe---E--EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          151 KEGLF---F--LETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       151 ~~~~~---~--~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ..+..   +  +++||+++.|++++|+++.+.+...
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            66543   2  7899999999999999999887653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=3.8e-22  Score=163.68  Aligned_cols=118  Identities=20%  Similarity=0.279  Sum_probs=98.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD  133 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  133 (225)
                      .+.+.+|||+|++.++..|..++++++++|||||+++          ..++.....|+..+.... ..+.|++|++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999998          456777777887776643 25799999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          134 LEEQR---------------AVPTEDAKEFAQ-----------KEGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       134 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      +....               .+..+++..++.           ..++.+++|||+++.||.++|+++.+.+++..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            84211               356777877776           35677999999999999999999999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=3.1e-21  Score=167.89  Aligned_cols=158  Identities=18%  Similarity=0.253  Sum_probs=111.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCc--CCC---------C--CCCcceeeeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNE--FSL---------D--SKATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQE   77 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~---------~--~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~   77 (225)
                      +..||+|+|+.++|||||+++|+...  ...         .  .....+++.......+     ++..+.+.||||||++
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            56899999999999999999998621  110         0  0111223333222222     4557899999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe--
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF--  155 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  155 (225)
                      .|...+..++..+|++|+|+|+++..+.+....|+....    .+.|+++|+||+|+.+..  ..+...++...+++.  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998777777777766543    378999999999997632  233455666667764  


Q ss_pred             -EEEeccCCCCCHHHHHHHHHHHHH
Q 027292          156 -FLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       156 -~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                       ++++||++|.|++++|+++.+.+-
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence             899999999999999999887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=3.3e-21  Score=163.21  Aligned_cols=151  Identities=19%  Similarity=0.275  Sum_probs=102.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTSAYY   87 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   87 (225)
                      .+|+|+|.+|||||||+|+|++.... ....+..+.+.....+...+.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            58999999999999999999987653 233444444444445555443  578999999653         345567789


Q ss_pred             cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEeccCC
Q 027292           88 RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA-KEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  163 (225)
                      +.+|++|+|+|+.+..+..  .+..|+..      .+.|+++|+||+|+.+.  . .... .++. .+++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754332  23334332      27899999999998531  0 1222 3333 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFN  180 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~  180 (225)
                      |.|+.++|+++.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999888754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=5.9e-21  Score=165.89  Aligned_cols=160  Identities=21%  Similarity=0.262  Sum_probs=114.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC---------C--CCcceeeeE--EEEEEE---CCEEEEEEEEeCCC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNE--FSLD---------S--KATIGVEFQ--TRTLVI---QHKSVKAQIWDTAG   75 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~---------~--~~~~~~~~~--~~~~~~---~~~~~~~~l~Dt~G   75 (225)
                      .++..+|+|+|+.++|||||+++|+...  +...         .  ....+++..  ...+.+   ++..+.+.||||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3567899999999999999999997621  1100         0  001111211  111111   45578999999999


Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF  155 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  155 (225)
                      +++|...+..++..+|++|+|+|+++..+.+....|.....    .+.|+++|+||+|+....  ......++...+++.
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence            99999999999999999999999999877777777766543    378999999999997632  233355566666763


Q ss_pred             ---EEEeccCCCCCHHHHHHHHHHHHH
Q 027292          156 ---FLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       156 ---~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                         ++++||++|.|++++|+++++.+-
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence               899999999999999999887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=3.6e-21  Score=161.62  Aligned_cols=161  Identities=20%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCc---CCCCCCC--cceeeeEEEEEEE-------------C--C----EEEE
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNE---FSLDSKA--TIGVEFQTRTLVI-------------Q--H----KSVK   67 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   67 (225)
                      ......++|+++|+.++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            456778999999999999999999998532   2233333  3222333222211             0  1    1378


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CC
Q 027292           68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VP  141 (225)
Q Consensus        68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~  141 (225)
                      +.||||||++.|.......+..+|++|+|+|+++.    ++.+.+.    .+... . ..|+++++||+|+.+...  ..
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  158 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII-G-QKNIIIAQNKIELVDKEKALEN  158 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH-T-CCCEEEEEECGGGSCHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEECccCCCHHHHHHH
Confidence            99999999999988888888899999999999953    3333332    22222 1 357999999999975321  11


Q ss_pred             HHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          142 TEDAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       142 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+++.++...   .+++++++||++|.|+++++++|.+.+
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            2334444443   357899999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=1.7e-21  Score=165.79  Aligned_cols=153  Identities=23%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-hhhh--------hhHhh
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-RYRA--------VTSAY   86 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~   86 (225)
                      .++|+|+|.+|+|||||+|+|.+.... ....+.++.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999987643 33444445555555555554  568999999987 5432        23457


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      +..+|++|+|+|++++.+++... ++..+     .+.|+++|+||+|+.+.  ...+++..+.. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999876665432 22322     27899999999999753  34444544432 446899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFN  180 (225)
Q Consensus       167 v~~~f~~l~~~~~~  180 (225)
                      ++++|++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=4.7e-21  Score=163.69  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE-------FSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY   87 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   87 (225)
                      -..++|+++|+.++|||||+++|.+..       ...+..+..+.+.....+..+  ...+.+|||||++.|.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence            357999999999999999999999866       222333333333333333333  36899999999999999999999


Q ss_pred             cCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHc----CCeEEE
Q 027292           88 RGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKE----GLFFLE  158 (225)
Q Consensus        88 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~  158 (225)
                      ..+|++|+|+|+++   +++.+.    +..+..   .+.|+++++||+|+.+...  ...+++.++....    ++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999987   334333    223322   2688899999999975211  1123344555544    577999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      +||++|.|+++++++|.+.+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999988775

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.5e-20  Score=155.06  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=111.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhhhc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSAYYR   88 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~   88 (225)
                      ..|+|+|.+|+|||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|.         +.|..++. .+.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            3499999999999999999998876444444444455556666666  46789999996         33444433 578


Q ss_pred             CCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEeccC
Q 027292           89 GAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKE---GLFFLETSAL  162 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~  162 (225)
                      .+|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++..+   +..++++||+
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~  336 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL  336 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            899999999998876  5566666776666655457899999999999753210 011232334444   2468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027292          163 EATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~~  181 (225)
                      ++.|+++++++|.+.+...
T Consensus       337 ~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          337 KRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhccc
Confidence            9999999999998877654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.85  E-value=1.2e-20  Score=159.43  Aligned_cols=159  Identities=19%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCcceeeeEEEEEE
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS-------------------------------LDSKATIGVEFQTRTLV   60 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   60 (225)
                      .+....++|+++|++++|||||+++|++....                               .+..+  +++.......
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~~   89 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRAY   89 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEEE
Confidence            34566799999999999999999999653211                               11112  2333333444


Q ss_pred             ECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh---HHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 027292           61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS---FDHIPRWLEELRSHADKNIV-IILIGNKSDLEE  136 (225)
Q Consensus        61 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~  136 (225)
                      +......+.||||||+++|.......+..+|++|+|+|+++...   ++....+...+......+.| +++++||+|+..
T Consensus        90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT  169 (439)
T ss_pred             EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence            44556789999999999999999999999999999999987532   21111222222222223667 999999999954


Q ss_pred             CCC------CCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 027292          137 QRA------VPTEDAKEFAQKEG------LFFLETSALEATNVENAFM  172 (225)
Q Consensus       137 ~~~------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f~  172 (225)
                      ...      ...+++..+...++      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            211      11223444454544      4699999999999999765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=4.8e-21  Score=155.11  Aligned_cols=119  Identities=21%  Similarity=0.270  Sum_probs=95.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~  132 (225)
                      ..+.+++|||+|++.++..|..++++++++|||+|++          +..++.....|+..+.... ..+.|++|++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3578999999999999999999999999999999765          4556666666776665543 2579999999999


Q ss_pred             CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          133 DLEEQR----------------AVPTEDAKEFAQ----------KEGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       133 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      |+.+.+                ..+.+++.++..          ..++.++++||+++.+|+.+|+.+.+.+++..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            985322                356777777642          34567899999999999999999999998753

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=3.2e-21  Score=165.03  Aligned_cols=153  Identities=16%  Similarity=0.123  Sum_probs=100.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHKSV   66 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   66 (225)
                      ..+||+++|++++|||||+++|++......                             .....+++.......+.....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            469999999999999999999976411100                             011113333333344445667


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH------hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD------HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .+.||||||+++|......++..+|++|+|+|+++.....      +..+.+..+.. .. ..|+|||+||+|+.+.+..
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~-~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT-CCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC-CCcEEEEEECcCcccchHH
Confidence            8999999999999999999999999999999999864322      11122222222 11 3569999999999763332


Q ss_pred             CHHHH----HHHHHHc-----CCeEEEeccCCCCCHHHH
Q 027292          141 PTEDA----KEFAQKE-----GLFFLETSALEATNVENA  170 (225)
Q Consensus       141 ~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~v~~~  170 (225)
                      ..+++    ..+....     +++++++||++|.|+.++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            22332    3333333     357999999999999853

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=5.8e-21  Score=156.65  Aligned_cols=120  Identities=20%  Similarity=0.232  Sum_probs=94.0

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNKS  132 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~  132 (225)
                      ..+.+.+|||+|++.++.+|..++++++++|||||++          +..+++....|+..+.+.. ..+.|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          6778888888888877653 2579999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 027292          133 DLEEQRA--V-------------------PTEDAKEFAQK----------------EGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       133 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |+.+.+.  +                   ..+++.+++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843111  1                   13455555432                123469999999999999999999


Q ss_pred             HHHHHHHh
Q 027292          176 TEIFNIVN  183 (225)
Q Consensus       176 ~~~~~~~~  183 (225)
                      +.+++...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=1.8e-21  Score=164.95  Aligned_cols=153  Identities=19%  Similarity=0.231  Sum_probs=101.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH--------hh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS--------AY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~   86 (225)
                      ..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+..++  ..+.+|||||...+...++        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4589999999999999999999987654 33334444444444455554  5678999999866544333        35


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN  166 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (225)
                      +..+|++|+|+|+++..+... ..|+..+.     +.|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998655443 44554442     36999999999997643322  111111  356799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFN  180 (225)
Q Consensus       167 v~~~f~~l~~~~~~  180 (225)
                      ++++|++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=8.5e-22  Score=166.65  Aligned_cols=152  Identities=19%  Similarity=0.168  Sum_probs=100.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------RYRAVTSAYYRG   89 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~   89 (225)
                      ++|+|+|.+|||||||+|+|++...... ..+.+++...........+..+.+|||||.+        .+...+..++..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999998765432 2233444444444455556689999999985        566777888999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE  168 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  168 (225)
                      +|++|+|+|+.+..+...  .|+..+..  ..+.|+++|+||+|+.....    ...++. .+++ .++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999987655432  33333222  24789999999999865321    111222 3455 68999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          169 NAFMTVLTEIF  179 (225)
Q Consensus       169 ~~f~~l~~~~~  179 (225)
                      ++|+++.+.+.
T Consensus       154 ~L~~~i~~~l~  164 (436)
T 2hjg_A          154 DLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHhcC
Confidence            99999887653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.84  E-value=2.4e-21  Score=154.42  Aligned_cols=160  Identities=15%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------CCcceeeeEEEEEEECCEEEEEEEEeCCCch-------h
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS--------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-------R   78 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~   78 (225)
                      +...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            456799999999999999999998876544332        3444445544444444455799999999962       2


Q ss_pred             hhhhh-------Hhhhc-------------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           79 YRAVT-------SAYYR-------------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        79 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      +..+.       ..++.             .+|+++++++.....-...-..++..+..    +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22222       22222             37899999977652221222334444432    79999999999986422


Q ss_pred             CCC--HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          139 AVP--TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       139 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ...  .+.+.+.....++.++++|+.++.++.+++++|.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            111  123444555678899999999999999998877653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.6e-21  Score=145.08  Aligned_cols=116  Identities=18%  Similarity=0.299  Sum_probs=88.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG-   89 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   89 (225)
                      ....++|+|+|++|||||||+++|.+..+..   ...++.+.         ......+.+|||||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            3567999999999999999999999987543   12222211         1144578899999999887777777765 


Q ss_pred             ---CCEEEEEEeCC-ChhhHHhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCC
Q 027292           90 ---AVGAMLVYDIS-RRQSFDHIPRWLEELRSHA----DKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        90 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~  138 (225)
                         +|++|+|||++ +..++..+..|+..+....    ..+.|+++|+||+|+.+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 8889998888887776542    3589999999999997643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.84  E-value=1.3e-20  Score=152.01  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=104.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCch-h--------hhhhhHh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-R--------YRAVTSA   85 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~   85 (225)
                      ...+|+|+|++|+|||||+|+|++..+.... .+.++.......  +......+.+|||||.. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3458999999999999999999998654322 222111111111  22234678999999986 2        2233455


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEA  164 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  164 (225)
                      ++..+|++++|+|+.+   +.....|+.....  ..+.|+++++||+|+........+.+..+...+++ .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6788999999999976   2233334432222  24789999999999875212122334455555665 5999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      .|++++++.+.+.+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999887643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=7e-20  Score=155.04  Aligned_cols=161  Identities=19%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-----------   82 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   82 (225)
                      +..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||+|...+...           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            45699999999999999999999987642 223333333344445555554  5789999997543221           


Q ss_pred             -hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeE
Q 027292           83 -TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQK----EGLFF  156 (225)
Q Consensus        83 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~  156 (225)
                       ...++..+|++++|+|+.+..+... ..+...+..   .+.|+++|+||+|+.+.+....++..+ +...    ..+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             1245678999999999987655443 222233332   378999999999997644433333322 2232    35789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998876554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=7.8e-23  Score=175.54  Aligned_cols=158  Identities=16%  Similarity=0.180  Sum_probs=112.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..++|+|+|++++|||||+++|.+..+...+.++.+.++....+... ....+.||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            46789999999999999999999876655555554444433333221 23468899999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHH---HHHc--CCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEF---AQKE--GLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|+++....+..    ..+......+.|+++++||+|+.+.... ...+...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999985443332    2223333347899999999999753221 11122211   1122  24799999999999999


Q ss_pred             HHHHHHHHH
Q 027292          170 AFMTVLTEI  178 (225)
Q Consensus       170 ~f~~l~~~~  178 (225)
                      +|+++...+
T Consensus       158 Lle~I~~l~  166 (537)
T 3izy_P          158 LAEATIALA  166 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=2.8e-20  Score=153.10  Aligned_cols=119  Identities=21%  Similarity=0.242  Sum_probs=91.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD  133 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  133 (225)
                      .+.+.+|||+|++.++..|..++++++++|||+|+++          ..++.....|+..+.... ..+.|+||++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          678888888888877653 35799999999999


Q ss_pred             CCCC----------------CCCCHHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292          134 LEEQ----------------RAVPTEDAKEFAQ-----------KEGLFFLETSALEATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       134 l~~~----------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      +.+.                ..+..+++..++.           ..++.++++||+++.||.++|+++.+.+++...
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            8521                1256677776652           345779999999999999999999999987654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=1e-20  Score=158.16  Aligned_cols=158  Identities=18%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCc-------CCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNE-------FSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      ..++|+++|+.++|||||+++|.+..       +..       ......+++.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998731       100       0001122333333344445567899999999999988


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRA---VPTEDAKEFAQKEG----  153 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---~~~~~~~~~~~~~~----  153 (225)
                      ....++..+|++|+|+|+++....+... ++..+..   .+.| +++++||+|+.+...   ...+++++++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            8888999999999999999854333222 2333333   2678 789999999974211   11234556666665    


Q ss_pred             -CeEEEeccCCCCC----------HHHHHHHHHHH
Q 027292          154 -LFFLETSALEATN----------VENAFMTVLTE  177 (225)
Q Consensus       154 -~~~~~~Sa~~~~~----------v~~~f~~l~~~  177 (225)
                       ++++++||++|.+          +.++|+.+.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             5799999999764          66666666543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=9.6e-21  Score=156.61  Aligned_cols=147  Identities=12%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      +|+++|++++|||||+++|.        .+  +++.......+......+.+|||||+++|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~--giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KK--GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EE--EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hC--CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        11  122222223344455679999999999998888888999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHcC---CeEEE--eccCC---CCC
Q 027292           99 ISRRQSFDHIPRWLEELRSHADKNIVI-ILIGN-KSDLEEQRAVP--TEDAKEFAQKEG---LFFLE--TSALE---ATN  166 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~~  166 (225)
                       +. ....+..+|+..+...   +.|. ++++| |+|+ +.....  .++++++....+   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             43 3344455666555443   5676 88899 9998 422111  133444444433   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEIFNI  181 (225)
Q Consensus       167 v~~~f~~l~~~~~~~  181 (225)
                      ++++++.|.+.+-..
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998887554

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.83  E-value=2.3e-20  Score=157.70  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=105.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC------------CCCc-------------------ceeeeEEEEEEECC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLD------------SKAT-------------------IGVEFQTRTLVIQH   63 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~~   63 (225)
                      ...++|+++|+.++|||||+++|++......            ...+                   .+++.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4579999999999999999999986531100            0011                   01121122222334


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCC--
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI-VIILIGNKSDLEEQRAV--  140 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~--  140 (225)
                      ....+.+|||||++.|...+..++..+|++|+|+|+++... .+..+|+..+...   +. |+++|+||+|+.+....  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence            55679999999999999888889999999999999997542 2334444444333   34 69999999999752211  


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292          141 --PTEDAKEFAQKEG-----LFFLETSALEATNVENAFM  172 (225)
Q Consensus       141 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~  172 (225)
                        ..+++..++..++     ++++++||++|.|+.++|+
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence              1234556666677     6799999999999998544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=3.7e-21  Score=161.29  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--------cCCCC-------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN--------EFSLD-------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      ....++|+++|++++|||||+++|.+.        .+...       .....+++.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999873        11100       001223333333444555567889999999999


Q ss_pred             hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027292           79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG-  153 (225)
Q Consensus        79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  153 (225)
                      |......++..+|++|+|+|+++... .+..+|+..+...   +.| +++++||+|+.+....   ..+++.+++...+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            99888899999999999999987543 3345555555443   678 8899999999742111   1224555666665 


Q ss_pred             ----CeEEEeccCCCCC
Q 027292          154 ----LFFLETSALEATN  166 (225)
Q Consensus       154 ----~~~~~~Sa~~~~~  166 (225)
                          ++++++||++|.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                5799999999976

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.9e-21  Score=159.40  Aligned_cols=164  Identities=12%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCC--------CcceeeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSL-DSK--------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ-------ER   78 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   78 (225)
                      +..++|+|+|++|+|||||+++|++..... .+.        ++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987653322 221        33333333333334556678999999998       66


Q ss_pred             hhhhhH-------hhhcCC-------------CEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           79 YRAVTS-------AYYRGA-------------VGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        79 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      +..++.       .++..+             |+++++++.. ..++..+. .|+..+    ..++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            665554       444332             4455555532 23344433 344433    347999999999999754


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          138 RAVPT--EDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       138 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      +.+..  +.+..++..++++++++||+++.+ ++.|.++.+.+.+....
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            33222  355666667789999999999999 89999999988776543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.82  E-value=2.3e-21  Score=163.85  Aligned_cols=157  Identities=18%  Similarity=0.222  Sum_probs=104.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCC---------------------------CCcceeeeEEEEEEECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN--EFSLDS---------------------------KATIGVEFQTRTLVIQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   65 (225)
                      ...++|+++|+.++|||||+++|++.  .+....                           ....+++.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35689999999999999999999864  221100                           0011222222223344556


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc----CCCC-cEEEEEeCCCCCCCCC-
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA----DKNI-VIILIGNKSDLEEQRA-  139 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-piilv~nK~Dl~~~~~-  139 (225)
                      ..+.+|||||+++|...+..++..+|++|+|+|+++ .+++....|.....++.    ..+. |+++++||+|+.+... 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            789999999999999999999999999999999998 55554433332222211    1244 6899999999976211 


Q ss_pred             -----CCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292          140 -----VPTEDAKEFAQKEG-----LFFLETSALEATNVENAFM  172 (225)
Q Consensus       140 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~  172 (225)
                           ...++++.++...+     ++++++||++|.|+.++++
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 11244566666665     6799999999999986654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=2.5e-20  Score=151.45  Aligned_cols=118  Identities=18%  Similarity=0.246  Sum_probs=94.9

Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeC
Q 027292           63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNK  131 (225)
Q Consensus        63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK  131 (225)
                      ...+.+++|||+|++.++..|..+++.++++|||+|++          +..++.....|+..+.... ..+.|++|++||
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence            34578999999999999999999999999999999998          5677777777877776553 258999999999


Q ss_pred             CCCCCC---------------CCCCHHHHHHHHH-Hc--------------------------CCeEEEeccCCCCCHHH
Q 027292          132 SDLEEQ---------------RAVPTEDAKEFAQ-KE--------------------------GLFFLETSALEATNVEN  169 (225)
Q Consensus       132 ~Dl~~~---------------~~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~v~~  169 (225)
                      +|+.+.               .....+++.+++. ++                          .+.++++||++..+|+.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            998421               1124555544432 22                          36689999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          170 AFMTVLTEIFN  180 (225)
Q Consensus       170 ~f~~l~~~~~~  180 (225)
                      +|+.+.+.+++
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999998

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=1.1e-19  Score=158.19  Aligned_cols=159  Identities=16%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------------HKSVKAQIWDTAGQERY   79 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~   79 (225)
                      ..++|+|+|++++|||||+++|.+..+........+.+.........                .....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765432221111111111111100                11125899999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-------------HH
Q 027292           80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-------------TE  143 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------------~~  143 (225)
                      ..++..++..+|++|+|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.......             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999998   55554432    2222   378999999999996432110             00


Q ss_pred             ----------HHHHHHHHcC---------------CeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          144 ----------DAKEFAQKEG---------------LFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       144 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                                +......+.+               ++++++||++|.|++++++++...+...
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                      1111111212               3699999999999999999998877544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.82  E-value=2.9e-20  Score=160.05  Aligned_cols=119  Identities=17%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---------------CCC-----CcceeeeEEEEEEECCEEEEEEEEeC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL---------------DSK-----ATIGVEFQTRTLVIQHKSVKAQIWDT   73 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt   73 (225)
                      .....+|+|+|++|+|||||+++|+......               ...     ...+++.......+...++.+.||||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT   89 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT   89 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence            4567899999999999999999996211000               000     00112222222333334578999999


Q ss_pred             CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ||++.|...+..+++.+|++|+|+|+++.........|. .+..   .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999866655554443 3332   3789999999999964

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.3e-20  Score=164.89  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-----------------------------CcceeeeEEEEEEECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-----------------------------ATIGVEFQTRTLVIQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   65 (225)
                      ...++|+|+|++++|||||+++|++........                             ...+++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998753322211                             001222222233333456


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHHhHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFDHIPRWLEELRSHADKN-IVIILIGNKSDLEEQRAVP  141 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~~~~~  141 (225)
                      ..+.||||||++.|......++..+|++|+|+|+++..   ++.....+...+......+ .|+|||+||+|+.+.....
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~  324 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  324 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence            78999999999999999999999999999999998742   1111112222222222224 4599999999997632222


Q ss_pred             H----HHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 027292          142 T----EDAKEFAQKEG-----LFFLETSALEATNVENA  170 (225)
Q Consensus       142 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  170 (225)
                      .    +++..+....+     ++++++||++|.|+.++
T Consensus       325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2    22334444443     57999999999999876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=8.1e-21  Score=161.76  Aligned_cols=157  Identities=16%  Similarity=0.150  Sum_probs=92.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC----------------------CC-----CCcceeeeEEEEEEECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN--EFSL----------------------DS-----KATIGVEFQTRTLVIQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~   65 (225)
                      ...++|+++|+.++|||||+++|++.  .+..                      ..     ....+++.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999752  1110                      00     0001112211111222335


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRA--  139 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~--  139 (225)
                      ..+.||||||++.|.......+..+|++|+|+|+++.   .+|+....|...+......+.| +++++||+|+.....  
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            6799999999999999888899999999999999985   3343222333333322233677 999999999964211  


Q ss_pred             ----CCHHHHHHHHHHc-------CCeEEEeccCCCCCHHHHH
Q 027292          140 ----VPTEDAKEFAQKE-------GLFFLETSALEATNVENAF  171 (225)
Q Consensus       140 ----~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~f  171 (225)
                          ...+++..++...       +++++++||++|.|+.++|
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                0122355666555       3569999999999998766

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=2.1e-20  Score=158.96  Aligned_cols=153  Identities=18%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC--------chhhhhhhHhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG--------QERYRAVTSAYY   87 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~   87 (225)
                      ..++|+|+|.+|||||||+|+|++..+.... .+.+.+...........+..+.+|||||        ++.+......++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            3679999999999999999999987654222 2334555555555566677899999999        777888888899


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATN  166 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  166 (225)
                      ..+|++|+|+|..+..+  ....|+..+...  .+.|+++|+||+|+.+..    ....++. .++. .++++||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence            99999999999876332  223344333322  479999999999986421    1111111 2333 368999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          167 VENAFMTVLTEI  178 (225)
Q Consensus       167 v~~~f~~l~~~~  178 (225)
                      +.++++.+.+.+
T Consensus       172 v~~L~~~i~~~l  183 (456)
T 4dcu_A          172 LGDLLDAVAEHF  183 (456)
T ss_dssp             HHHHHHHHHTTG
T ss_pred             hHHHHHHHHhhc
Confidence            999999987654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.80  E-value=1.3e-19  Score=165.03  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=107.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNE-------FSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ....++|+++|++++|||||+++|.+..       +..       ....+.+++.....+.++.....+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4467999999999999999999998631       000       11122333333333445555678999999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG--  153 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  153 (225)
                      ......++..+|++|+|+|+++... .+..+|+..+...   ++| +|+++||+|+.+....   ..+++..++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            9888889999999999999998543 2334455555443   678 7899999999752111   1234556666665  


Q ss_pred             ---CeEEEeccCCC--------CCHHHHHHHHHH
Q 027292          154 ---LFFLETSALEA--------TNVENAFMTVLT  176 (225)
Q Consensus       154 ---~~~~~~Sa~~~--------~~v~~~f~~l~~  176 (225)
                         ++++++||++|        .|+.++|+.|.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence               57999999999        346666665544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=3.9e-20  Score=148.85  Aligned_cols=163  Identities=13%  Similarity=0.159  Sum_probs=104.4

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcc-----------------e---eeeE-----------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS------KATI-----------------G---VEFQ-----------   55 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~------~~~~-----------------~---~~~~-----------   55 (225)
                      +....++|+|+|.+|||||||+|+|++..+.+..      .|+.                 +   ++..           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999998764221      1210                 0   0000           


Q ss_pred             ------------EEEEE-ECCEEEEEEEEeCCCch-------------hhhhhhHhhhcCCCEEE-EEEeCCChhhHHhH
Q 027292           56 ------------TRTLV-IQHKSVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDISRRQSFDHI  108 (225)
Q Consensus        56 ------------~~~~~-~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~  108 (225)
                                  ...+. .......+.+|||||..             .+..+...++..++.+| +|+|+++..+....
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                        00000 00113578999999953             45566777888888776 79999875443333


Q ss_pred             HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--C-CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          109 PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE--G-LFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       109 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      ..|+..+.   ..+.|+++|+||+|+.+......+.++......  + .+++++||+++.|++++|+++.+..
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            33444432   347899999999999764432333222110111  2 3578899999999999999988743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=3.3e-21  Score=164.25  Aligned_cols=156  Identities=15%  Similarity=0.196  Sum_probs=106.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ...++|+++|+.++|||||+++|....+.....+..+.+.....  +...+..+.||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            35679999999999999999999876554443333332222222  2223346889999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CCCHH--HHHHHHHHcC--CeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AVPTE--DAKEFAQKEG--LFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~v~  168 (225)
                      +|+|+++....+.... +..+..   .+.|+++++||+|+.+..  .+..+  +...+...++  ++++++||++|.|++
T Consensus        80 LVVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            9999987432222222 222222   378999999999996421  11100  0001112233  689999999999999


Q ss_pred             HHHHHHHH
Q 027292          169 NAFMTVLT  176 (225)
Q Consensus       169 ~~f~~l~~  176 (225)
                      ++|+++..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99998864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=1.1e-19  Score=154.36  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=102.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC------------------C----C-----CcceeeeEEEEEEECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE--FSLD------------------S----K-----ATIGVEFQTRTLVIQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~------------------~----~-----~~~~~~~~~~~~~~~~~~   65 (225)
                      ...++|+++|++++|||||+++|++..  +...                  +    .     ...+++.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            356999999999999999999998641  1100                  0    0     001122222222334455


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFD---HIPRWLEELRSHADKNIV-IILIGNKSDLEEQR  138 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~  138 (225)
                      ..+.||||||++.|......++..+|++|+|+|+++..   +++   +..+++..+..   .+.| +++++||+|+.+..
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~~  161 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  161 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccCC
Confidence            78999999999999999999999999999999999752   221   22222222222   2565 99999999997421


Q ss_pred             CC----CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 027292          139 AV----PTEDAKEFAQKEG-----LFFLETSALEATNVENA  170 (225)
Q Consensus       139 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  170 (225)
                      ..    ..++++.++...+     ++++++||++|.|+.++
T Consensus       162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11    1233555556665     57999999999998754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=6.6e-19  Score=134.42  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=99.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAV   82 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~   82 (225)
                      +.....+|+|+|++|+|||||+++|++..+.....++.+.......+..++   .+.+|||||..          .+...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            344568999999999999999999998764333344444444433333322   57799999973          23333


Q ss_pred             hHhhh---cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--
Q 027292           83 TSAYY---RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG--  153 (225)
Q Consensus        83 ~~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~--  153 (225)
                      ...++   ..++++++++|+.+..+..  .+..|+.   .   .+.|+++++||+|+....+  ...+.++.++...+  
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~  172 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  172 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence            33344   5789999999998754432  2333332   1   3789999999999864211  11234445555554  


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          154 LFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       154 ~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +.++++|++++.++++++++|.+.+
T Consensus       173 ~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          173 VQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CceEEEeecCCCCHHHHHHHHHHHH
Confidence            4588999999999999999887765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=4e-18  Score=134.83  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR------   88 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   88 (225)
                      ..++|+|+|.+|+|||||+++|++....... .+..+.......+..+  +..+.+|||||++.+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            5799999999999999999999997753222 2222333333333333  458899999998776554433332      


Q ss_pred             ---CCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCCCCH
Q 027292           89 ---GAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN--IVIILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        89 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~  142 (225)
                         .+|++++|++++... +... ..|+..+......+  .|+++|+||+|+...+....
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  171 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY  171 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence               789999999987644 3333 46777777665433  48999999999965444443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=4.3e-18  Score=150.50  Aligned_cols=118  Identities=11%  Similarity=0.110  Sum_probs=83.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC----------------cceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA----------------TIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      .....+|+|+|+.|+|||||+++|++.........                ..++++......+....+.+.+|||||++
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            45678999999999999999999985322111000                01222222333333346789999999999


Q ss_pred             hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      .|......+++.+|++++|+|+.+..... ...|+..+...   +.|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence            99998999999999999999988654332 23444444432   78999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=8.3e-19  Score=144.87  Aligned_cols=156  Identities=12%  Similarity=0.094  Sum_probs=105.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEE--------------------------------------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTR--------------------------------------   57 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   57 (225)
                      ..+.|+|+|++|||||||+++|.+..+.+......+......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999776433322211000000                                      


Q ss_pred             --------------EEE-ECCEEEEEEEEeCCCchhh-------------hhhhHhhhcCCCEEEEEEeCCChhhHHhHH
Q 027292           58 --------------TLV-IQHKSVKAQIWDTAGQERY-------------RAVTSAYYRGAVGAMLVYDISRRQSFDHIP  109 (225)
Q Consensus        58 --------------~~~-~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  109 (225)
                                    .+. .......+.+|||||...+             ..+...++..+|++|+|++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          000 0111235889999997665             566778899999999999876533222  3


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292          110 RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus       110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      .|+..+......+.|+++|+||+|+.+......+....+...++.+|+++++..+.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            4555555555567899999999999865555555455455556778999999987776655443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=2.1e-20  Score=163.16  Aligned_cols=151  Identities=24%  Similarity=0.252  Sum_probs=81.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   65 (225)
                      ...++|+|+|++++|||||+++|++......                             .....+++.......+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            4578999999999999999999964210000                             00111233333333344456


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SF---DHIPRWLEELRSHADKNIV-IILIGNKSDLEEQR  138 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~  138 (225)
                      ..+.||||||++.|.......+..+|++|+|+|+++..   .+   .+....+..+...   +.| +|+|+||+|+.+..
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~  331 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWS  331 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTC
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccccc
Confidence            78999999999999988888899999999999998632   11   1112222222222   565 99999999997521


Q ss_pred             CCCH----HHHHHHH-HHcCC-----eEEEeccCCCCCHH
Q 027292          139 AVPT----EDAKEFA-QKEGL-----FFLETSALEATNVE  168 (225)
Q Consensus       139 ~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~  168 (225)
                      ....    .++..+. ...++     +++++||++|.|+.
T Consensus       332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            1111    2233333 33444     69999999999998

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=9.9e-18  Score=140.07  Aligned_cols=161  Identities=16%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhh---HhhhcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVT---SAYYRGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~---~~~~~~~   90 (225)
                      ..|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||...    +..+.   ...+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999988643222222222222223333332 35688999999632    11121   2234579


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +.+++++|++ ...+..+..|...+..+..  ...|.++++||+|+...  ...+.+.+.....+..++.+||+++.+++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5567777777777665532  25789999999998753  22333445555567889999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNIV  182 (225)
Q Consensus       169 ~~f~~l~~~~~~~~  182 (225)
                      +++++|.+.+.+..
T Consensus       314 eL~~~i~~~l~~~~  327 (416)
T 1udx_A          314 ALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.75  E-value=8.8e-18  Score=149.15  Aligned_cols=164  Identities=14%  Similarity=0.187  Sum_probs=107.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeE-------EEEEE--------------------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQ-------TRTLV--------------------------   60 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~-------~~~~~--------------------------   60 (225)
                      ...++|+|+|.+|+|||||+|+|++....+.. .+++.....       ..+..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            35799999999999999999999987754432 333210000       00110                          


Q ss_pred             --------------------ECCEE--EEEEEEeCCCchhh---hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHH
Q 027292           61 --------------------IQHKS--VKAQIWDTAGQERY---RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL  115 (225)
Q Consensus        61 --------------------~~~~~--~~~~l~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  115 (225)
                                          .+...  ..+.+|||||....   ......+++.+|++|+|+|+++..+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                00000  35899999996653   345567889999999999999877766665555444


Q ss_pred             HhhcCCCCcEEEEEeCCCCCCCCCCCHH---H-------HHH-----HHHH--------cCCeEEEeccC----------
Q 027292          116 RSHADKNIVIILIGNKSDLEEQRAVPTE---D-------AKE-----FAQK--------EGLFFLETSAL----------  162 (225)
Q Consensus       116 ~~~~~~~~piilv~nK~Dl~~~~~~~~~---~-------~~~-----~~~~--------~~~~~~~~Sa~----------  162 (225)
                      ..   .+.|+++|+||+|+........+   .       +..     +...        ....++++||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            32   36789999999999653211111   1       111     1111        12358999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHHH
Q 027292          163 ----EATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       163 ----~~~~v~~~f~~l~~~~~~~  181 (225)
                          ++.|+.++++.+.+.+...
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhhccCHHHHHHHHHHHHHHh
Confidence                9999999999998877543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=9.5e-18  Score=135.92  Aligned_cols=163  Identities=14%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Ccceee---eEEE--------------------------------
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVE---FQTR--------------------------------   57 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~---~~~~--------------------------------   57 (225)
                      ....++|+|+|.+|+|||||+|+|++..+.+... ..+...   ....                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456899999999999999999999987632211 000000   0000                                


Q ss_pred             ---------------------EEE-ECCEEEEEEEEeCCCchh-------------hhhhhHhhhcCCCEEEEEEeCCCh
Q 027292           58 ---------------------TLV-IQHKSVKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVYDISRR  102 (225)
Q Consensus        58 ---------------------~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~  102 (225)
                                           .+. .......+.+|||||...             +......++..+|++|+|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 111224689999999643             556677788999999999997432


Q ss_pred             h-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC------CCCHHHHHHHHH
Q 027292          103 Q-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE------ATNVENAFMTVL  175 (225)
Q Consensus       103 ~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~f~~l~  175 (225)
                      . .......++..+   ...+.|+++|+||+|+.+......+.++.....++..++++++..      +.|+.++++.+.
T Consensus       181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            2 111111222222   234789999999999976443223322211112235577776554      678888888766


Q ss_pred             HHHH
Q 027292          176 TEIF  179 (225)
Q Consensus       176 ~~~~  179 (225)
                      ..+-
T Consensus       258 ~~~~  261 (315)
T 1jwy_B          258 LYFK  261 (315)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6553

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.74  E-value=1.1e-17  Score=148.50  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLD------------------SKATIGVEFQTRTLVIQHKSVKAQIWDTA   74 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   74 (225)
                      ..+...+|+|+|++|+|||||+++|+.......                  .....++......  +....+.+.+||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~--~~~~~~~i~liDTP   85 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT--CFWKDHRINIIDTP   85 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEE--EEETTEEEEEECCC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEE--EEECCeEEEEEECc
Confidence            456789999999999999999999984211000                  0111111122222  22235789999999


Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      |+..|...+..++..+|++|+|+|+.+..+......|.. +..   .+.|+++|+||+|+..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999999999999999999999999998777666655653 333   2789999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=1.7e-17  Score=142.94  Aligned_cols=119  Identities=15%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC--------------------CCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD--------------------SKATIGVEFQTRTLVIQHKSVKAQIWDT   73 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   73 (225)
                      .....+|+|+|++|+|||||+++|+.......                    ..+..+++.......+....+.+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            35679999999999999999999986321110                    0011122222222233334578999999


Q ss_pred             CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ||++.|......++..+|++|+|+|+.+..... ...++..+   ...+.|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            999999988888999999999999998753322 12222222   234799999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=1e-17  Score=133.08  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=81.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH-------hh--
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS-------AY--   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--   86 (225)
                      ..++|+|+|.+|+|||||+|+|++..+...... .+.+..............+.+|||||.+.+.....       .+  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            579999999999999999999998775332221 11222222233333456799999999866542211       12  


Q ss_pred             hcCCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKN--IVIILIGNKSDLEEQR  138 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~  138 (225)
                      ...+|++|+|+|++.. ++.. ...|+..+......+  .|+++|+||+|+....
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            2478999999998753 2333 246777776654433  6999999999996543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=2.2e-16  Score=140.36  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC-----------C-----CCcceeeeEEEEEEEC-----CEEEEEE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNE--FSLD-----------S-----KATIGVEFQTRTLVIQ-----HKSVKAQ   69 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~   69 (225)
                      ..+...+|+|+|+.++|||||+++|+...  +...           +     ....++......+...     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997531  1100           0     1111121121222221     2338899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ||||||+..|...+..+++.+|++|+|+|+++.........|.. +.   ..+.|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence            99999999999999999999999999999998655544444432 22   23789999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.71  E-value=3.1e-18  Score=138.03  Aligned_cols=165  Identities=12%  Similarity=0.200  Sum_probs=86.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcC-cCCCCCCC------cceeeeEEEEEE--ECCEEEEEEEEeCCCc-------
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARN-EFSLDSKA------TIGVEFQTRTLV--IQHKSVKAQIWDTAGQ-------   76 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~-~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~-------   76 (225)
                      ..+..++|+|+|++|+|||||+++|++. .++..+.+      +.+.......+.  ..+....+.+|||+|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            3456799999999999999999998875 44333210      111111111222  2334567899999997       


Q ss_pred             hhhhhhhH-------hhhc-------------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           77 ERYRAVTS-------AYYR-------------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        77 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      +.+..+..       .++.             .+++++++.+.+. .+++.+.  ...+.... .+.++++|+||.|+..
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCC
Confidence            55544433       3322             2345555555432 1222222  12233332 3678999999999975


Q ss_pred             CCCC--CHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          137 QRAV--PTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      .++.  ..+++.+++..+++.+|++||+++ +++++|.++.+.+.+..
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            3222  234667788889999999999999 99999999998886543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.71  E-value=7e-17  Score=134.00  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=96.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD  133 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  133 (225)
                      .+.+.+|||+|++.++..|..+++.++++|||||+++          ..+++....|+..+.... ..+.|++||+||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3889999999999999999999999999999999998          788999999999887653 35799999999999


Q ss_pred             CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEeccCCCCCHHHH
Q 027292          134 LEEQRA---V---------------------------PTEDAKEFA-----QK--------EGLFFLETSALEATNVENA  170 (225)
Q Consensus       134 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~v~~~  170 (225)
                      +.+.+.   +                           ..+++..++     ..        ..+.+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            843111   1                           134455443     22        2456889999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027292          171 FMTVLTEIFNIVN  183 (225)
Q Consensus       171 f~~l~~~~~~~~~  183 (225)
                      |+++.+.+++...
T Consensus       376 F~~v~~~I~~~~l  388 (402)
T 1azs_C          376 FNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=2.8e-18  Score=138.32  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=109.1

Q ss_pred             HHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHH
Q 027292           32 QILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIP  109 (225)
Q Consensus        32 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  109 (225)
                      +|+.+++.+.|. ..+.||.+..+. ..+..++   .+.+||+  +++|..++..+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888888 788899884443 2222222   7889999  8999999999999999999999999987 688889


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHH
Q 027292          110 RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      .|+..+..   .+.|++||+||+|+.+.+.  .++..+++..++  +.++++||++|.|++++|.++..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99987765   3799999999999975322  244667777777  88999999999999999998764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=1.2e-16  Score=141.96  Aligned_cols=118  Identities=16%  Similarity=0.166  Sum_probs=83.3

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC----C------------CCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFAR--NEFSLD----S------------KATIGVEFQTRTLVIQHKSVKAQIWDTA   74 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   74 (225)
                      +.+...+|+|+|++|+|||||+++|+.  +.+...    .            .+..+.......+.  .....+.+||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA--WEGHRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE--ETTEEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE--ECCeeEEEEECc
Confidence            345689999999999999999999985  221100    0            01111111112222  234779999999


Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      |+..|...+..+++.+|++|+|+|+.+..+......|.. +..   .+.|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999998888999999999999999998766665555543 333   2789999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.70  E-value=3.6e-17  Score=136.80  Aligned_cols=160  Identities=16%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh----
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS--------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR----   80 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----   80 (225)
                      ..+..++|+|+|++|+|||||++.|++..+....        .++.........+...+....+.+||++|...+.    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            4556789999999999999999999987653221        1111111111111222334578999999975431    


Q ss_pred             ---hh------------------hHhhhcCCCEEEEEEeCCCh-hhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           81 ---AV------------------TSAYYRGAVGAMLVYDISRR-QSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        81 ---~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                         .+                  ...++..+++.+++|..... .+++... .|+..+.    .+.|+|+|+||+|+...
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence               11                  11233444443444443322 2333332 5666553    27899999999998754


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292          138 RAVPT--EDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       138 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      +.+..  ..+...+...++.++++|++++.++.++|..+..
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            33332  4566777888999999999999999987766654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1.6e-17  Score=138.41  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRT--L-------------------VIQH-KSVKAQIWDTAG   75 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G   75 (225)
                      ++|+|+|.+|||||||+|+|++........+.++.+.....  +                   .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987643223222222221111  1                   1122 357899999999


Q ss_pred             chh----hhhhhH---hhhcCCCEEEEEEeCCCh
Q 027292           76 QER----YRAVTS---AYYRGAVGAMLVYDISRR  102 (225)
Q Consensus        76 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~  102 (225)
                      ...    ...+..   ..++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    222333   346899999999999874

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=4e-17  Score=134.39  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=95.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------Ccce--------------------eee--------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIG--------------------VEF--------------   54 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~--------------------~~~--------------   54 (225)
                      ...++|+|+|.+|||||||+|+|++..+.+...      |+..                    +++              
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            346899999999999999999999987642221      1100                    000              


Q ss_pred             ---------EEEEEE-ECCEEEEEEEEeCCCch-------------hhhhhhHhhhcCCC-EEEEEEeCCChhhHHhHHH
Q 027292           55 ---------QTRTLV-IQHKSVKAQIWDTAGQE-------------RYRAVTSAYYRGAV-GAMLVYDISRRQSFDHIPR  110 (225)
Q Consensus        55 ---------~~~~~~-~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  110 (225)
                               ....+. .......+.||||||..             .+..+...++..++ ++++|++++......   .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence                     000000 01113569999999952             45556667776665 455566665422211   2


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH--HHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 027292          111 WLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF--AQKEG-LFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      |+..+......+.|+++|+||+|+.+......+..+..  ....+ ..++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22333333445789999999999976433222221110  00122 24678999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=8.8e-17  Score=123.65  Aligned_cols=155  Identities=11%  Similarity=0.066  Sum_probs=95.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeee--------------EEEEEEE----------------CCEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEF--------------QTRTLVI----------------QHKS   65 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   65 (225)
                      ...+|+|+|.+|+|||||+++|+..............+.              ....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            467999999999999999999987532111100000000              0011111                1123


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA  145 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (225)
                      ..+.+|||+|.....   ..+....+.+++|+|+.+...  ....+...   .   +.|+++|+||+|+.+......+.+
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            568899999951111   011125688999999876432  11111111   1   478899999999964323455666


Q ss_pred             HHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          146 KEFAQKE--GLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       146 ~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ...+...  +++++++||++|.|++++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6666554  46899999999999999999999877554

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.65  E-value=1.3e-15  Score=131.83  Aligned_cols=118  Identities=15%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc------------------CCC--CCCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE------------------FSL--DSKATIGVEFQTRTLVIQHKSVKAQIWDTA   74 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   74 (225)
                      ...=||.|+|+.++|||||..+|+...                  +..  ......+++.....+.+.+.++.++|+|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            356789999999999999999996310                  000  001112233333333444566889999999


Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      |+..|.......++.+|++|+|+|+...-..+....|... ..+   ++|.++++||+|...
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT---TCCEEEEEECTTSCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh---CCceEEEEecccchh
Confidence            9999999999999999999999999986555555555333 333   899999999999854

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=8.5e-15  Score=119.97  Aligned_cols=146  Identities=19%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchhhh--
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQERYR--   80 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~--   80 (225)
                      ++|+|+|.+|||||||+|+|.+........+..+.+.....+.+++.               ...+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987643333332222222222333331               2578999999987643  


Q ss_pred             --hh---hHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHH------------------------------
Q 027292           81 --AV---TSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEEL------------------------------  115 (225)
Q Consensus        81 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~------------------------------  115 (225)
                        .+   ....++.+|++++|+|+.+.          ++++.+..|..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23357899999999999862          2233222211111                              


Q ss_pred             ----------H-------------------hh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292          116 ----------R-------------------SH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE  163 (225)
Q Consensus       116 ----------~-------------------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (225)
                                .                   .+ .....|+++++|+.|..-........+++++...+++++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      1                   01 112489999999998642112234567778888899999999763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=1e-17  Score=129.28  Aligned_cols=154  Identities=11%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE------------EEEEEEC-CE------------------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ------------TRTLVIQ-HK------------------   64 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   64 (225)
                      ..++|+|+|.+|||||||+++|+...+...+.++...++.            ...+..+ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987654433333333322            1111111 11                  


Q ss_pred             -EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292           65 -SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE  143 (225)
Q Consensus        65 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  143 (225)
                       ...+.++|++|.-...   ..+-...+..+.++|.........  .....+      +.|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence             0134555555521000   011122344556666432111100  001111      4678999999999753334566


Q ss_pred             HHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          144 DAKEFAQKE--GLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       144 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ++..++...  +++++++||++|.|++++|+++.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            677776654  5789999999999999999999887754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=2.7e-15  Score=135.70  Aligned_cols=118  Identities=18%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCC--cceeeeEEEEEE------------ECC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKA--TIGVEFQTRTLV------------IQH   63 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~   63 (225)
                      .....||+|+|+.++|||||+++|+...-..                +..+  +.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3567899999999999999999998641100                0111  111111111121            133


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..+.+....|.....    .+.|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            47899999999999999999999999999999999999877776666654332    378999999999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.59  E-value=2.6e-16  Score=129.67  Aligned_cols=104  Identities=17%  Similarity=0.094  Sum_probs=69.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED  144 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  144 (225)
                      ++.+.||||||...   .....+..+|++|+|+|....+....+..+        -.+.|+++|+||+|+...... ...
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~-~~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA-RLA  238 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH-HHH
Confidence            46789999999533   223345889999999998765443322111        124688999999998642111 111


Q ss_pred             HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          145 AKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       145 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ..++...          ++.+++++||++|.|+++++++|.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222221          25789999999999999999999887754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=2.1e-15  Score=130.55  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEEEEECCE-----------------------E-
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRTLVIQHK-----------------------S-   65 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~-   65 (225)
                      ..+..++|+|+|.+|+|||||+|+|++..+.   ....+++.  ... .+.....                       + 
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~  137 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGN  137 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEE-EEECCSSSEEECCC------------------
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEE-EEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence            3456799999999999999999999998764   23333321  110 0000000                       0 


Q ss_pred             ----------------EEEEEEeCCCchh-----------hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 027292           66 ----------------VKAQIWDTAGQER-----------YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH  118 (225)
Q Consensus        66 ----------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  118 (225)
                                      ..+.||||||...           |......++..+|++|+|+|+++....+....|+..+.. 
T Consensus       138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-  216 (550)
T 2qpt_A          138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-  216 (550)
T ss_dssp             CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-
T ss_pred             cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-
Confidence                            2588999999764           556677788999999999999875444455566655533 


Q ss_pred             cCCCCcEEEEEeCCCCCC
Q 027292          119 ADKNIVIILIGNKSDLEE  136 (225)
Q Consensus       119 ~~~~~piilv~nK~Dl~~  136 (225)
                        .+.|+++|+||+|+..
T Consensus       217 --~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 --HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             --CGGGEEEEEECGGGSC
T ss_pred             --cCCCEEEEEECCCccC
Confidence              3689999999999875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.55  E-value=1.5e-13  Score=122.56  Aligned_cols=120  Identities=16%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcC--------cCC----------CCCCCcceeeeEEEEEEEC-----CEEEEE
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARN--------EFS----------LDSKATIGVEFQTRTLVIQ-----HKSVKA   68 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~   68 (225)
                      .+.++.-||.|+|+.++|||||..+|+..        ...          .+..+..++......+.+.     ..++.+
T Consensus         8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i   87 (709)
T 4fn5_A            8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV   87 (709)
T ss_dssp             SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred             CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence            34578889999999999999999998641        110          1112222222222233322     236889


Q ss_pred             EEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           69 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      +|+|||||..|.......++.+|++|+|+|+...-..+....|.....+    ++|.++++||+|..
T Consensus        88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred             EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence            9999999999999999999999999999999986555554555544433    78999999999974

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=1.7e-14  Score=118.86  Aligned_cols=154  Identities=15%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-------------------KSVKAQIWDTAGQER   78 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   78 (225)
                      ++|+++|.+|+|||||+++|.+........+..+.........+..                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999988653222222112222121222211                   235789999999765


Q ss_pred             hh-------hhhHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHH--------------------------
Q 027292           79 YR-------AVTSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEEL--------------------------  115 (225)
Q Consensus        79 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~--------------------------  115 (225)
                      ..       ......++.+|++++|+|+.+.          ++...+..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42       1223457899999999999851          1222111110000                          


Q ss_pred             ---------H----h-------------------hc-CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEEEe
Q 027292          116 ---------R----S-------------------HA-DKNIVIILIGNKSDL--EEQ-RAVPTEDAKEFAQKEGLFFLET  159 (225)
Q Consensus       116 ---------~----~-------------------~~-~~~~piilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                               .    +                   +. ....|+++++||.|.  .+. .....+.++++++..+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                     0    0                   00 123799999999974  222 1223566778888889999999


Q ss_pred             ccCCCCCHHHHH
Q 027292          160 SALEATNVENAF  171 (225)
Q Consensus       160 Sa~~~~~v~~~f  171 (225)
                      ||+....+.+++
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998765555443

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=4.4e-15  Score=130.80  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=83.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--cCCC------------CC--CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARN--EFSL------------DS--KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~--~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      -||.|+|+.++|||||..+|+..  ....            ..  ....+++.....+.+.+.++.++|+|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47999999999999999999741  1100            00  01113344444444566778899999999999999


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .....++.+|++|+|+|+...-..+....|... ...   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc---CCCeEEEEecccccc
Confidence            999999999999999999975444444444433 333   788999999999753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.51  E-value=7.6e-15  Score=120.51  Aligned_cols=104  Identities=12%  Similarity=-0.009  Sum_probs=62.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED  144 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  144 (225)
                      ++.+.++||+|....   .......+|++++|+|+.+....+.+..   .+     .+.|.++|+||+|+.+.... ...
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            356889999995321   2334678999999999986543222211   11     14678899999998631100 011


Q ss_pred             HHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          145 AKEFAQ----------KEGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       145 ~~~~~~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ...+..          .++.+++.+||+++.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            122211          124578999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.2e-12  Score=107.83  Aligned_cols=155  Identities=14%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHh
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RAVTSA   85 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~   85 (225)
                      .+....+|.|+|.|+||||||+|+|.+........+.++.+.....+.+.+  .+++++||||.-.-       ......
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~  145 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIA  145 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence            456678999999999999999999999776665566656666666666654  46889999995321       112234


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcCCe
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEE--------QRAVPTEDAKEFAQKEGLF  155 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~  155 (225)
                      .++.+|++++|+|+.++..  .......++....  ..+.|.++++||.|...        ......++++.+...+.+.
T Consensus       146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt  223 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN  223 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred             HHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence            5678999999999997532  2222222332221  13567788899999742        2234566677776666543


Q ss_pred             EEEeccCCCCCHHHHH
Q 027292          156 FLETSALEATNVENAF  171 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f  171 (225)
                      .-++-...+...+++.
T Consensus       224 ~kpv~~~~nv~eddl~  239 (376)
T 4a9a_A          224 SAEIAFRCDATVDDLI  239 (376)
T ss_dssp             SEEEEECSCCCHHHHH
T ss_pred             CCCeeecccCCHHHHH
Confidence            2222223334445543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.48  E-value=1e-13  Score=123.04  Aligned_cols=160  Identities=13%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Ccceeee---------------------------------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEF---------------------------------------   54 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~---------------------------------------   54 (225)
                      -..++|+|+|.+++|||||+|+|++..+.+... ..+....                                       
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456899999999999999999999977632221 1110000                                       


Q ss_pred             ---------EEEEEEE-CCEEEEEEEEeCCCchh-------------hhhhhHhhh-cCCCEEEEEEeCCChhhHHhHHH
Q 027292           55 ---------QTRTLVI-QHKSVKAQIWDTAGQER-------------YRAVTSAYY-RGAVGAMLVYDISRRQSFDHIPR  110 (225)
Q Consensus        55 ---------~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  110 (225)
                               ....+.+ ......+.|+||||...             +..+...++ ..+|++++|+|+++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                     0000000 01122478999999432             333444444 57899999999987433222222


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--HcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 027292          111 WLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ--KEG-LFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~-~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ++..+   ...+.|+++|+||+|+.+..............  ..+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33333   33478999999999998644433221110000  012 246789999999999999888763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.47  E-value=6.8e-15  Score=120.50  Aligned_cols=104  Identities=14%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH--
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT--  142 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--  142 (225)
                      ++.+.||||||...+..   .....+|++++|+|.........+..   ..     .+.|.++|+||+|+.+......  
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            45799999999654432   24589999999999875533222111   00     1457889999999864211100  


Q ss_pred             HHHHHHHHHc-------CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          143 EDAKEFAQKE-------GLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       143 ~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      ++.+......       ..+++++||++|.|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1122211222       456899999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.46  E-value=5.2e-13  Score=105.12  Aligned_cols=111  Identities=14%  Similarity=-0.017  Sum_probs=67.7

Q ss_pred             EEEEEEeCCCchhhhhhhH------hhhcCCCEEEEEEeCCChhhHHhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      +.+.+|||||...+.....      ..+.. +++|+++|.........+.. +..........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999876543321      23455 88888998764322222211 1111111112268999999999986522


Q ss_pred             CCCHHHHHHH----------------------------HHHcC--CeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          139 AVPTEDAKEF----------------------------AQKEG--LFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       139 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      .  .+++.++                            +..++  .+++++||+++.|++++++++.+.+-
T Consensus       188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            1  1111111                            23333  47999999999999999999887653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.39  E-value=4.6e-13  Score=107.78  Aligned_cols=97  Identities=13%  Similarity=0.077  Sum_probs=78.9

Q ss_pred             chhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027292           76 QERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFAQKEG  153 (225)
Q Consensus        76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~  153 (225)
                      ++++..+...++.++|++++|+|++++. ++..+..|+..+..   .+.|+++|+||+|+.+...+. .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6677777888999999999999999886 88888999987765   379999999999997532111 344556667778


Q ss_pred             CeEEEeccCCCCCHHHHHHHHH
Q 027292          154 LFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus       154 ~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ++++++||+++.|++++|+.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.34  E-value=1.1e-12  Score=107.02  Aligned_cols=104  Identities=11%  Similarity=0.058  Sum_probs=62.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED  144 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  144 (225)
                      +..+.|+||+|.....   ......+|.+++|+|....+..+.+..+   +.     +.+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            4578999999964322   1235689999999998644322111111   11     23457777999975321111112


Q ss_pred             HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          145 AKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       145 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      .+.+...          +..+++.+|+.++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2333221          2456899999999999999998887653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.26  E-value=1.4e-10  Score=96.06  Aligned_cols=87  Identities=13%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER   78 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   78 (225)
                      ..-.+|+|+|.+|+|||||+|.|++... .....|.++.+.....+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999999765 4455555455555555555431               13588999999432


Q ss_pred             -------hhhhhHhhhcCCCEEEEEEeCCC
Q 027292           79 -------YRAVTSAYYRGAVGAMLVYDISR  101 (225)
Q Consensus        79 -------~~~~~~~~~~~~d~~i~v~d~~~  101 (225)
                             +.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234456789999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.25  E-value=6.6e-12  Score=103.87  Aligned_cols=88  Identities=13%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQERY   79 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   79 (225)
                      ...++|+|+|.+|+|||||+|+|.+........+..+.+.....+.+.+.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34689999999999999999999988765444455445444444444331               235899999997764


Q ss_pred             hh-------hhHhhhcCCCEEEEEEeCCCh
Q 027292           80 RA-------VTSAYYRGAVGAMLVYDISRR  102 (225)
Q Consensus        80 ~~-------~~~~~~~~~d~~i~v~d~~~~  102 (225)
                      .+       .+..+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       455678899999999998753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=92.83  Aligned_cols=102  Identities=10%  Similarity=0.017  Sum_probs=68.1

Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHH----hhc-CCCCcEEEEEeCC-CCCCCCCCCHHHHHHH
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR----SHA-DKNIVIILIGNKS-DLEEQRAVPTEDAKEF  148 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~----~~~-~~~~piilv~nK~-Dl~~~~~~~~~~~~~~  148 (225)
                      |++.++.+|..|+.++|++|||+|.+|.+-.+ ....+..+.    +.. ..+.|++|++||. |+..  ..+..++.+.
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~  187 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE  187 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence            78889999999999999999999999865433 333332222    221 2478999999995 6753  4555554433


Q ss_pred             HH----HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          149 AQ----KEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       149 ~~----~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      ..    .....+..|||.+|+|+.+.++||.+.+.
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            21    12345899999999999999999987654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=90.58  Aligned_cols=105  Identities=9%  Similarity=0.023  Sum_probs=73.2

Q ss_pred             CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH---hHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCCCCCCHHHHHHH
Q 027292           74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD---HIPRWLEELRSHA-DKNIVIILIGNK-SDLEEQRAVPTEDAKEF  148 (225)
Q Consensus        74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~~~~  148 (225)
                      .|++..+.+|..|+.++|++|||+|.+|.+-++   ++.++...+.+.. ..+.|++|++|| .|+..  ..+..++.+.
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~  272 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE  272 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHH
Confidence            467889999999999999999999999876443   2222222232221 248999999996 58754  4555554433


Q ss_pred             HH----HcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          149 AQ----KEGLFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       149 ~~----~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                      ..    .....+..|||.+|+|+.+.++||.+.+..
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            21    123448999999999999999999987643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.01  E-value=1.6e-09  Score=89.43  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=74.6

Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE----FAQ  150 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~  150 (225)
                      ..+.|.+++..+.+.+|++++|+|+.++.     ..|...+.+... +.|+++|+||+|+.+. ....+...+    +++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            46889999999999999999999999753     456666666554 7899999999999753 333344443    356


Q ss_pred             HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292          151 KEGL---FFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   69999999999999999988653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.91  E-value=1.2e-10  Score=96.19  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=81.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC------cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARN------EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AVT   83 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~   83 (225)
                      .+|+++|.+|+|||||+|+|++.      .......+.  ++.....+....   .+.++||||.....        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999875      222222222  233333333332   27899999943221        111


Q ss_pred             Hhhh--cCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027292           84 SAYY--RGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLE  158 (225)
Q Consensus        84 ~~~~--~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
                      ..++  ...|+++++++....   ..+..       +......+.|+++++||.|...... .......+.+..+..+.+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p  309 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSP  309 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCS
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCC
Confidence            2222  678999999998432   11111       1222234789999999999865332 233345566667766666


Q ss_pred             eccCCCCC
Q 027292          159 TSALEATN  166 (225)
Q Consensus       159 ~Sa~~~~~  166 (225)
                      .++.+..+
T Consensus       310 ~~~~~~~~  317 (369)
T 3ec1_A          310 PSKRYAAE  317 (369)
T ss_dssp             SCGGGTTT
T ss_pred             CCchhhhh
Confidence            66554333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.87  E-value=1.7e-09  Score=92.40  Aligned_cols=152  Identities=15%  Similarity=0.097  Sum_probs=83.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc------CcCCC----CCCCc-----------ceeeeEEEEEE-------------
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR------NEFSL----DSKAT-----------IGVEFQTRTLV-------------   60 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~------~~~~~----~~~~~-----------~~~~~~~~~~~-------------   60 (225)
                      .....|+|+|.+||||||++++|..      .....    .+.+.           .+..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            4467899999999999999999983      21100    00000           00111110000             


Q ss_pred             ECCEEEEEEEEeCCCchhhh-hhh---Hhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 027292           61 IQHKSVKAQIWDTAGQERYR-AVT---SAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI-ILIGNKSD  133 (225)
Q Consensus        61 ~~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D  133 (225)
                      .....+.+.||||||..... .+.   ...  ...+|.+++|+|+.......   .....+.+.    .|+ ++|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCc
Confidence            00134578999999965321 111   111  22789999999998743311   112223221    454 78899999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 027292          134 LEEQRAVPTEDAKEFAQKEGLFF------------------LETSALEATN-VENAFMTVLTE  177 (225)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~f~~l~~~  177 (225)
                      .....  .  .+.......+.++                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            86421  1  1222334455543                  2368888888 88888887654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.85  E-value=6.1e-09  Score=85.95  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=72.0

Q ss_pred             CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027292           75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF----AQ  150 (225)
Q Consensus        75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~  150 (225)
                      .++.|.++...++..++++++|+|+.++.+     .|...+.+... +.|+++|+||+|+.+. ....+...++    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            478899999999999999999999998663     34444444444 7899999999999763 3333444443    55


Q ss_pred             HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292          151 KEGL---FFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            5676   68999999999999999988654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.84  E-value=1.1e-10  Score=96.41  Aligned_cols=135  Identities=10%  Similarity=0.106  Sum_probs=75.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCC-----CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhH
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSL-----DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTS   84 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~   84 (225)
                      .+|+++|.+|+|||||+|+|++.....     ......+++.....+.....   +.++||||......        ...
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999998853211     01111223333333333322   78999999533211        111


Q ss_pred             hh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292           85 AY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus        85 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                      .+  ....+.++++++.........+.    .+......+.|+++++||.|...... .......+.+..+..+++.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCc
Confidence            11  35678889998874211111110    01122234789999999999875322 23334445566665544444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.80  E-value=8.8e-09  Score=85.98  Aligned_cols=115  Identities=21%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECC--EEEEEEEEeCCCchhh-------------
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQH--KSVKAQIWDTAGQERY-------------   79 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~-------------   79 (225)
                      .++++|+|++|+|||||++.|++..+......  ..+.......+....  ....+.++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999988643211110  111112222222222  2346889999873211             


Q ss_pred             -----hhhhHhh---------hcC--CCE-EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           80 -----RAVTSAY---------YRG--AVG-AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        80 -----~~~~~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                           ......+         ...  +|+ ++|+.|....-+...    ...+... ..+.|+|+|.||+|...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAIS  190 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSC
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccc
Confidence                 1111111         111  233 555666654322222    1222222 24899999999999754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.72  E-value=4.8e-08  Score=77.16  Aligned_cols=137  Identities=17%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-------CcceeeeEEEEEEECC--EEEEEEEEeCCCchh---------
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSK-------ATIGVEFQTRTLVIQH--KSVKAQIWDTAGQER---------   78 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~---------   78 (225)
                      .++++|+|++|+|||||++.|++...+....       ...........+....  ....+.++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5799999999999999999998743222110       0000001111111111  223678999998211         


Q ss_pred             ---------hhhhhH----------hhhcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           79 ---------YRAVTS----------AYYRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        79 ---------~~~~~~----------~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                               +.....          ..+..+++.++++|... .-.... ...+..+   ... .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence                     000000          01234688888888542 211111 2223333   232 8899999999976421


Q ss_pred             CC--CHHHHHHHHHHcCCeEEE
Q 027292          139 AV--PTEDAKEFAQKEGLFFLE  158 (225)
Q Consensus       139 ~~--~~~~~~~~~~~~~~~~~~  158 (225)
                      +.  ....++......++.+|+
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            11  112233334556666554

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.69  E-value=3.9e-08  Score=78.13  Aligned_cols=101  Identities=17%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             EeCCCch-hhhhhhHhhhcCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027292           71 WDTAGQE-RYRAVTSAYYRGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE  147 (225)
Q Consensus        71 ~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  147 (225)
                      -..||+. .........+..+|++++|+|+.++.+..  .+..|+        .+.|.++|+||+|+.+..  ..+...+
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~   73 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKE   73 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHH
Confidence            3468876 34455666789999999999999877654  233332        378999999999997521  1122233


Q ss_pred             HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          148 FAQKEGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      +.+..+.+++.+||.++.|+.++++.+.+.+...
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            4445578899999999999999999887776543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.68  E-value=5.1e-07  Score=75.30  Aligned_cols=156  Identities=13%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-eeeeEEEEEEECC-EEEEEEEEeCCCchhh----hhh-hHhhhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-GVEFQTRTLVIQH-KSVKAQIWDTAGQERY----RAV-TSAYYRG   89 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~----~~~-~~~~~~~   89 (225)
                      ...|+|+|++|+|||||+|.+.+...+....... +.......+.+.. ....+.+||++|....    ... ....+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3479999999999999999999843222211110 1100000111111 1124789999985321    111 1112334


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HHcC-
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE-------EQRAVPTEDA----KEFA----QKEG-  153 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~~-  153 (225)
                      .+..++ ++.....  .+-..+...+..   .+.|+++|.||.|+.       .-+......+    +++.    .+.+ 
T Consensus       149 ~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455554 7765311  111112233333   268999999999873       1112233333    3332    1222 


Q ss_pred             --CeEEEecc--CCCCCHHHHHHHHHHHH
Q 027292          154 --LFFLETSA--LEATNVENAFMTVLTEI  178 (225)
Q Consensus       154 --~~~~~~Sa--~~~~~v~~~f~~l~~~~  178 (225)
                        ..++.+|+  .++.+++++.+.+.+.+
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence              24788999  55566999888887665

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.46  E-value=5.1e-07  Score=75.74  Aligned_cols=136  Identities=17%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC------cCC----CCCCC-----------cceeeeEEEEEEE-------------
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN------EFS----LDSKA-----------TIGVEFQTRTLVI-------------   61 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~------~~~----~~~~~-----------~~~~~~~~~~~~~-------------   61 (225)
                      ....|+++|.+|+||||++..|...      ...    ..+.+           ..+..........             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999988741      100    00000           0011111000000             


Q ss_pred             CCEEEEEEEEeCCCchhhh-----hhhH-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           62 QHKSVKAQIWDTAGQERYR-----AVTS-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        62 ~~~~~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      ...++.+.|+||+|.....     .+.. .....+|.+++|+|+......   ......+.+.   -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence            0012678899999943211     1111 123367999999998864332   2222333332   23456888999976


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292          136 EQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      .    ....+..+....+.++..++.
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc
Confidence            4    233455566678888776665

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.43  E-value=2.1e-07  Score=73.95  Aligned_cols=59  Identities=20%  Similarity=0.379  Sum_probs=35.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE   77 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (225)
                      ...++|+|+|.+|+|||||+|+|.+........ ..+++.....+....   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            356899999999999999999999865332221 112222222233322   57899999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.38  E-value=1.4e-07  Score=74.19  Aligned_cols=57  Identities=23%  Similarity=0.290  Sum_probs=35.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER   78 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (225)
                      ++++++|.+|+|||||+|+|.+...... .++.+++.....+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            6999999999999999999998665322 2222333322222222   2578999999653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.25  E-value=1.5e-06  Score=72.88  Aligned_cols=91  Identities=16%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             EEEEEEEeCCCchh--hh----hhhHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           65 SVKAQIWDTAGQER--YR----AVTSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      .+.+.++||||...  ..    .....  .....|.+++|+|+.......   .....+.+.   -.+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc
Confidence            45688999999533  11    11111  122568999999998643322   223344433   234678899999753


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292          137 QRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                          ....+.......+.|+..++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                334455666678899777765  4443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.23  E-value=5e-06  Score=69.82  Aligned_cols=85  Identities=16%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             EEEEEEEEeCCCchhhhh-h---hHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-c-EEEEEeCCCCC
Q 027292           64 KSVKAQIWDTAGQERYRA-V---TSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI-V-IILIGNKSDLE  135 (225)
Q Consensus        64 ~~~~~~l~Dt~G~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iilv~nK~Dl~  135 (225)
                      ..+.+.|+||||...... +   ...  .+..+|.+++|+|+....   ........+.   . .. | ..+|+||+|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~-~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---E-AVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---T-TSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---h-cccCCeEEEEeCCCCc
Confidence            345689999999543211 1   111  122689999999987543   1222222222   1 34 5 78899999975


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEe
Q 027292          136 EQRAVPTEDAKEFAQKEGLFFLET  159 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                      ..    ...+..+....+.++..+
T Consensus       252 ~~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          252 AK----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ST----THHHHHHHHHSSCCEEEE
T ss_pred             cc----hHHHHHHHHHHCCCEEEe
Confidence            31    123344666777776555

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.20  E-value=1.3e-06  Score=75.89  Aligned_cols=63  Identities=16%  Similarity=0.157  Sum_probs=39.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-eeeeEEEEE--EE-CCEEEEEEEEeCCCch
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-GVEFQTRTL--VI-QHKSVKAQIWDTAGQE   77 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~   77 (225)
                      ...++|+|+|.+|+|||||+|+|++.........++ +.+.....+  .. ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            467899999999999999999999876432222111 111111111  11 1234568899999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.17  E-value=9.7e-07  Score=69.33  Aligned_cols=91  Identities=15%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCCchhh-hhhhHhhhcCCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027292           73 TAGQERY-RAVTSAYYRGAVGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA  149 (225)
Q Consensus        73 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  149 (225)
                      .|||... .......+..+|++++|+|+.++.+...  +. |       .  +.|.++|+||+|+.+..  ..+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~~--~~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADEK--TTKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCHH--HHHHHHHHH
Confidence            4776532 2345667889999999999998765432  22 2       1  78999999999997521  112233444


Q ss_pred             HHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292          150 QKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus       150 ~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ...+.++ .+||.++.|++++++.+.+
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5567788 9999999999999887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.14  E-value=4.7e-07  Score=72.61  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             hhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEE
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLFFLE  158 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  158 (225)
                      +....+.++|.+++|+|+.++. +...+.+++.....   .++|.+||+||+|+.+...  ...+.+.+.....+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            3445688999999999999754 34445555544433   3788899999999986321  0012344445556888999


Q ss_pred             eccCCCCCHHHHHH
Q 027292          159 TSALEATNVENAFM  172 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~  172 (225)
                      +|+.++.|+++++.
T Consensus       156 ~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          156 TSSKDQDSLADIIP  169 (307)
T ss_dssp             CCHHHHTTCTTTGG
T ss_pred             EecCCCCCHHHHHh
Confidence            99998888776554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.03  E-value=1.3e-05  Score=70.27  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFS   43 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~   43 (225)
                      ..|+|+|++|+|||||++.+.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            34999999999999999999886433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.00  E-value=1.2e-05  Score=64.33  Aligned_cols=92  Identities=16%  Similarity=0.041  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCchh--hhh-hhH-----hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027292           65 SVKAQIWDTAGQER--YRA-VTS-----AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLE  135 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~  135 (225)
                      .+.+.++||||...  ... +..     .....+|.+++|+|+...   .........+..    ..+ ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            45689999999665  221 111     124478999999998642   222222333332    244 67788999975


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      .    ....+..+....+.++..++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            3    23445567777888877765  4555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.95  E-value=1.7e-05  Score=64.80  Aligned_cols=84  Identities=17%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH---HHHHcCCeEEEeccC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE---FAQKEGLFFLETSAL  162 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~  162 (225)
                      ...++|.+++|++.....+...+.+++......   +.|.+||+||+|+.+...  .+....   .....|.+++.+|+.
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecC
Confidence            467899999987765333444556665554443   678899999999975321  111333   334567889999999


Q ss_pred             CCCCHHHHHHHH
Q 027292          163 EATNVENAFMTV  174 (225)
Q Consensus       163 ~~~~v~~~f~~l  174 (225)
                      ++.|++++...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999877643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.88  E-value=1.4e-06  Score=74.04  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--hhhhh--------H
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--YRAVT--------S   84 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~   84 (225)
                      ...+.|+++|.+|+||||+.++|....... ...+.............+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999997643211 111100000000000011112345789988733  23332        4


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEE
Q 027292           85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG  129 (225)
Q Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~  129 (225)
                      .++...++.++|+|.++. +.+....|+..+.+.   +.+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            456667888999999986 455566777666654   34444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.72  E-value=3.9e-05  Score=62.07  Aligned_cols=91  Identities=14%  Similarity=0.035  Sum_probs=50.8

Q ss_pred             EEEEEeCCCchhhhhh----hHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV  140 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  140 (225)
                      .+.++|++|.......    ...  ..-..|-.+++.|.....   .+......+.+..  +. .++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~i-t~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--KI-DGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--CC-CEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--CC-CEEEEeCcCCcc----
Confidence            4667999995432211    111  112468889999966432   3333344444332  22 356779999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          141 PTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      ..-.+.......+.++..++  +|+++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            12335566777788877765  5555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.68  E-value=0.00025  Score=59.57  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+..-|.|+|.+++|||+|+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4577799999999999999999986

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.30  E-value=0.0027  Score=53.27  Aligned_cols=81  Identities=15%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             EEEEEEEeCCCchhhhh-hhH-----hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQ  137 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~  137 (225)
                      .+.+.|+||||...... +..     .....+|.+++|+|+.....   .......+...    .+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence            45789999999543321 111     12447899999999875322   22222333222    23 2467899997532


Q ss_pred             CCCCHHHHHHHHHHcCCeE
Q 027292          138 RAVPTEDAKEFAQKEGLFF  156 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~  156 (225)
                       .   ..+..+....+.++
T Consensus       256 -~---g~~l~i~~~~~~Pi  270 (433)
T 2xxa_A          256 -G---GAALSIRHITGKPI  270 (433)
T ss_dssp             -C---THHHHHHHHHCCCE
T ss_pred             -H---HHHHHHHHHHCCCe
Confidence             1   23334555566653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.24  E-value=0.00017  Score=53.02  Aligned_cols=23  Identities=22%  Similarity=0.679  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+++|+|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.23  E-value=0.00077  Score=54.28  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=47.4

Q ss_pred             EEEEEEEeCCCchhhhh-hhH------hhh-----cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           65 SVKAQIWDTAGQERYRA-VTS------AYY-----RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~-~~~------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      .+.+.|+||||...... +..      ..+     ..+|.+++|++....  .+.+..    +......-...-+|+||.
T Consensus       191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~  264 (320)
T 1zu4_A          191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKM  264 (320)
T ss_dssp             TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECG
T ss_pred             CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCC
Confidence            35789999999654321 110      111     247899999998732  222222    222211111234678999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292          133 DLEEQRAVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       133 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                      |....    ...+..+....+.++..+.
T Consensus       265 d~~~~----~g~~~~~~~~~~~Pi~~i~  288 (320)
T 1zu4_A          265 DSTSK----GGIGLAIKELLNIPIKMIG  288 (320)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEE
T ss_pred             CCCCc----hhHHHHHHHHHCcCEEEEe
Confidence            97532    1245566677888865553

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.22  E-value=0.00033  Score=52.83  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             EEEEEEEeCCCc-hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292           65 SVKAQIWDTAGQ-ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE  143 (225)
Q Consensus        65 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  143 (225)
                      .+.+.++|+|+. ..  ......+..+|.+|+++..+ ..+...+..++..+....  +.++.+|+|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            356889999986 32  23345677899999998875 445555666666665533  4568899999986430  1234


Q ss_pred             HHHHHHHHcCCeEE
Q 027292          144 DAKEFAQKEGLFFL  157 (225)
Q Consensus       144 ~~~~~~~~~~~~~~  157 (225)
                      ++.+..++++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            45555555665543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.09  E-value=0.00038  Score=56.87  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.09  E-value=0.00012  Score=58.65  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            78999999999999999998753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.08  E-value=0.00029  Score=51.72  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.01  E-value=0.00036  Score=52.11  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|++|+|||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.94  E-value=0.0016  Score=52.03  Aligned_cols=22  Identities=50%  Similarity=0.739  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57999999999999999998 54

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.90  E-value=0.00051  Score=51.19  Aligned_cols=22  Identities=14%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999774

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.89  E-value=0.00053  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.89  E-value=0.002  Score=45.29  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999988654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.86  E-value=0.00056  Score=51.32  Aligned_cols=22  Identities=45%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999774

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.83  E-value=0.00071  Score=50.52  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.82  E-value=0.00063  Score=51.72  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|+|++|||||||++.|.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.80  E-value=0.00065  Score=51.51  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.80  E-value=0.00063  Score=49.52  Aligned_cols=20  Identities=45%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027292           19 KVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~   38 (225)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.74  E-value=0.00083  Score=48.33  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.73  E-value=0.00081  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|+|+|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.73  E-value=0.0009  Score=49.51  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.69  E-value=0.0008  Score=50.53  Aligned_cols=26  Identities=27%  Similarity=0.201  Sum_probs=22.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-..|.|+|++|+|||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999988764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.67  E-value=0.00096  Score=48.25  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|+|++|||||||++.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.66  E-value=0.00097  Score=51.24  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998774

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.66  E-value=0.0013  Score=47.76  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|+|++|+|||||++.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.62  E-value=0.0011  Score=48.83  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|++|+|||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.62  E-value=0.0011  Score=49.48  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.61  E-value=0.0048  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.61  E-value=0.0012  Score=47.46  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 027292           18 FKVVLIGDSAVGKSQILARF   37 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l   37 (225)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.60  E-value=0.0011  Score=50.57  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998774

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.59  E-value=0.0011  Score=49.28  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ..|+|+|++|||||||++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999997753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.58  E-value=0.0012  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998763

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.58  E-value=0.0013  Score=47.30  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|.|.+||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.57  E-value=0.0013  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.57  E-value=0.0019  Score=47.99  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .......|+|.|.+||||||+.+.|..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            444557899999999999999998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.56  E-value=0.0013  Score=50.66  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.55  E-value=0.0014  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.54  E-value=0.0013  Score=48.94  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.|+|+|++|+|||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.53  E-value=0.0017  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.52  E-value=0.0015  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.52  E-value=0.0015  Score=50.27  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 027292           18 FKVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~   38 (225)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.52  E-value=0.0014  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999775

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.51  E-value=0.0014  Score=51.19  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.49  E-value=0.0013  Score=47.99  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|+|++|+|||+|++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.48  E-value=0.0015  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999774

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.48  E-value=0.0016  Score=50.04  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999774

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.46  E-value=0.0015  Score=50.80  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999775

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.45  E-value=0.0016  Score=48.72  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|.|+|+.|+|||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.45  E-value=0.0016  Score=51.01  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.44  E-value=0.0018  Score=49.99  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999774

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.44  E-value=0.0016  Score=50.86  Aligned_cols=22  Identities=41%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999998774

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.44  E-value=0.0017  Score=49.66  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999775

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.43  E-value=0.0018  Score=47.98  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.43  E-value=0.0018  Score=50.11  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998775

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.42  E-value=0.011  Score=47.71  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|.|++|+|||||++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998877

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.42  E-value=0.0017  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.42  E-value=0.002  Score=47.91  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.42  E-value=0.0017  Score=49.99  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.41  E-value=0.0017  Score=50.67  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.41  E-value=0.0018  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+|+|+|.+||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.40  E-value=0.0023  Score=47.59  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...+.|+|.|.+|+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.40  E-value=0.0019  Score=47.22  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-++|+|.+|+|||||+++|+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            456899999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.40  E-value=0.0018  Score=50.16  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998775

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.39  E-value=0.0019  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.38  E-value=0.0022  Score=51.16  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      .++++|++|+|||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.38  E-value=0.002  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.37  E-value=0.0023  Score=46.93  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.37  E-value=0.0021  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999763

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.36  E-value=0.0019  Score=48.04  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|.|.+|||||||++.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.35  E-value=0.0021  Score=50.14  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.35  E-value=0.002  Score=47.93  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -..|+|+|++|+|||||++.|...
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.35  E-value=0.0022  Score=50.62  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.34  E-value=0.0021  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.33  E-value=0.002  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0026  Score=47.45  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.32  E-value=0.0022  Score=48.45  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|.|+|++|+||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.31  E-value=0.0014  Score=49.32  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.31  E-value=0.0021  Score=49.90  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.31  E-value=0.0022  Score=51.23  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.31  E-value=0.0026  Score=47.07  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ......|+|.|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999999764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.30  E-value=0.0027  Score=46.59  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..+|+|+|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.30  E-value=0.0028  Score=46.32  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -..|+|.|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.30  E-value=0.0025  Score=48.64  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .....+|+|+|.+|+||||+.+.|..
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            33457899999999999999998865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.30  E-value=0.0031  Score=47.06  Aligned_cols=26  Identities=15%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .....|+|+|.+|+|||||++.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34467999999999999999999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.30  E-value=0.0022  Score=50.22  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.30  E-value=0.0013  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=14.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh-cC
Q 027292           19 KVVLIGDSAVGKSQILARFA-RN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~-~~   40 (225)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 53

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.29  E-value=0.0021  Score=48.60  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|+|++|+|||||++.+++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999873

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.27  E-value=0.0026  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.147  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.26  E-value=0.0027  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.25  E-value=0.0023  Score=51.27  Aligned_cols=27  Identities=26%  Similarity=0.217  Sum_probs=22.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...-.-|+|+|++|||||||++.|.+-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            344567999999999999999998774

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.0027  Score=49.59  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.22  E-value=0.0032  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.22  E-value=0.003  Score=45.31  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.21  E-value=0.0086  Score=48.87  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.19  E-value=0.0034  Score=48.31  Aligned_cols=24  Identities=13%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..++|+|.|.+||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.17  E-value=0.0093  Score=50.06  Aligned_cols=63  Identities=27%  Similarity=0.369  Sum_probs=38.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc------------------CcCCCC---CCCcceeeeEEEEEEE---CCEEEEEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR------------------NEFSLD---SKATIGVEFQTRTLVI---QHKSVKAQI   70 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~l   70 (225)
                      .+..=|.|+|..++|||+|+|.|+.                  ..|...   ...|.|+-.....+..   ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            4677788999999999999996641                  122221   1122232222111111   456788999


Q ss_pred             EeCCCch
Q 027292           71 WDTAGQE   77 (225)
Q Consensus        71 ~Dt~G~~   77 (225)
                      +||.|..
T Consensus       145 lDTEG~~  151 (457)
T 4ido_A          145 MDTQGTF  151 (457)
T ss_dssp             EEECCBT
T ss_pred             EeccCCC
Confidence            9999943

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.16  E-value=0.0031  Score=45.75  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +|+|+|.+|+||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.16  E-value=0.0027  Score=49.84  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ++++|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.16  E-value=0.0037  Score=46.58  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.15  E-value=0.0033  Score=47.45  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.13  E-value=0.0034  Score=47.61  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0065  Score=46.17  Aligned_cols=29  Identities=14%  Similarity=-0.055  Sum_probs=23.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.+.+-|++.|.++.|||.|+++++...
T Consensus        25 ~P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           25 YPQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             cCCCceEEEecCcccccHHHHHHHHhccc
Confidence            35566777777999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.12  E-value=0.0035  Score=45.54  Aligned_cols=23  Identities=39%  Similarity=0.624  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.12  E-value=0.0014  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|.|+|++|+|||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.12  E-value=0.0029  Score=51.63  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.11  E-value=0.0035  Score=45.54  Aligned_cols=24  Identities=13%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|.|+|.+|+|||||+.+|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.09  E-value=0.0042  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.09  E-value=0.0032  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ++|+|++|+|||+|++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.09  E-value=0.002  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998774

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.08  E-value=0.0035  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.07  E-value=0.0033  Score=51.23  Aligned_cols=23  Identities=43%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.05  E-value=0.0028  Score=51.89  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998774

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.05  E-value=0.0033  Score=47.51  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.05  E-value=0.0034  Score=48.30  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....|.|+|+.|+|||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.04  E-value=0.0034  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.|+|+|++|||||||++.+.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.04  E-value=0.0035  Score=49.68  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998774

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.04  E-value=0.0037  Score=45.48  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.03  E-value=0.0036  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999999874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.01  E-value=0.0037  Score=51.10  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998743

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.00  E-value=0.0043  Score=47.27  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-.-|+|.|..|+|||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.99  E-value=0.0038  Score=50.96  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|+|++|+|||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999876

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.99  E-value=0.0024  Score=51.00  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999988763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.99  E-value=0.0039  Score=51.30  Aligned_cols=23  Identities=43%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.99  E-value=0.0037  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ---++++|+.|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34688999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.97  E-value=0.0042  Score=46.83  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.97  E-value=0.0039  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.96  E-value=0.0041  Score=51.08  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|+.|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3689999999999999999874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.96  E-value=0.0041  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999998753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.96  E-value=0.0055  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.079  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.96  E-value=0.0041  Score=48.23  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.96  E-value=0.0055  Score=44.80  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.93  E-value=0.0048  Score=45.69  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.93  E-value=0.0038  Score=50.45  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.93  E-value=0.0046  Score=48.92  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....|+|.|++|||||||.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999965

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.92  E-value=0.0064  Score=48.87  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...+-|.|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4457799999999999999998865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.92  E-value=0.0038  Score=51.07  Aligned_cols=22  Identities=18%  Similarity=0.542  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.92  E-value=0.0049  Score=45.19  Aligned_cols=21  Identities=14%  Similarity=0.222  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.91  E-value=0.0065  Score=46.00  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999998865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.89  E-value=0.0049  Score=45.29  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.88  E-value=0.0068  Score=44.36  Aligned_cols=25  Identities=32%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....|+|.|.+|+||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.88  E-value=0.0045  Score=45.19  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.85  E-value=0.0047  Score=50.75  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|+|++|+|||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.85  E-value=0.0047  Score=48.40  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|++|+|||+|++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.85  E-value=0.0053  Score=45.25  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.85  E-value=0.0045  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|+|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.84  E-value=0.0045  Score=49.45  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.84  E-value=0.0062  Score=45.33  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....|+|+|.+|+|||||++.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.83  E-value=0.0063  Score=48.20  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=21.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .....|+|+|++|+|||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.82  E-value=0.0061  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.80  E-value=0.0051  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -++|+|++|+|||||+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.79  E-value=0.21  Score=39.66  Aligned_cols=21  Identities=10%  Similarity=0.295  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            344566999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.78  E-value=0.0041  Score=45.00  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.78  E-value=0.0059  Score=43.94  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.77  E-value=0.0034  Score=51.09  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998743

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.75  E-value=0.0052  Score=50.77  Aligned_cols=22  Identities=41%  Similarity=0.662  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+.|+|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999873

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.74  E-value=0.0059  Score=44.44  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.74  E-value=0.006  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.73  E-value=0.0021  Score=48.06  Aligned_cols=21  Identities=14%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.72  E-value=0.0039  Score=45.35  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=15.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.72  E-value=0.0066  Score=46.95  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 027292           18 FKVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~   38 (225)
                      ..|.|+|++|||||||++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999997

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.71  E-value=0.0043  Score=48.03  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .....|+|+|.+||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.70  E-value=0.0054  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .|+|+|++|||||||++.+++--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999998743

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.69  E-value=0.006  Score=47.14  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+|.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.69  E-value=0.0067  Score=44.95  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..++|.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.69  E-value=0.0065  Score=45.96  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.69  E-value=0.0056  Score=51.09  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.66  E-value=0.006  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ---|+|+|+.|+|||||++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999999876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.65  E-value=0.022  Score=45.70  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.65  E-value=0.0079  Score=43.17  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..-.|+|.|.+||||||+.+.|..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.64  E-value=0.018  Score=42.55  Aligned_cols=85  Identities=13%  Similarity=-0.025  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTE  143 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~  143 (225)
                      +.+.++|+|+..  .......+..+|.+|+++..+...  ..+..++..+....  ..+.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            678999999865  333455666799999999876544  55666666665543  235677899999985421   223


Q ss_pred             HHHHHHHHcCCeEE
Q 027292          144 DAKEFAQKEGLFFL  157 (225)
Q Consensus       144 ~~~~~~~~~~~~~~  157 (225)
                      +..+..+.++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555555665443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.62  E-value=0.0084  Score=43.56  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+|+||||+++.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.60  E-value=0.0062  Score=48.14  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|+|++|+|||||+..+++.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0058  Score=51.62  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|+|+.|+|||||++.|++-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998763

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.59  E-value=0.0082  Score=46.32  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.58  E-value=0.0066  Score=51.59  Aligned_cols=23  Identities=30%  Similarity=0.704  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ---|+|+|..|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.55  E-value=0.0034  Score=51.20  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.52  E-value=0.0076  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -++|+|++|+|||||+..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999987

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.52  E-value=0.0073  Score=46.76  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.|+|+|.+|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.52  E-value=0.0075  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ++.|+|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.50  E-value=0.0079  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|+|++|+|||||+..++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.48  E-value=0.0097  Score=44.71  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999975

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.45  E-value=0.0089  Score=41.99  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ...|++.|++|+|||+|++.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3569999999999999999997643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.44  E-value=0.011  Score=46.45  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999873

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.39  E-value=0.009  Score=44.72  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...|+|.|.+|+||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.37  E-value=0.011  Score=41.94  Aligned_cols=19  Identities=32%  Similarity=0.566  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027292           20 VVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~   38 (225)
                      .+|+|+.|+|||+|+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.35  E-value=0.012  Score=44.83  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-..|+|.|.+|+||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.33  E-value=0.0083  Score=48.11  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-++|+|..|+|||||++.+.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            456789999999999999999865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.29  E-value=0.012  Score=45.12  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+.|.|.|++|+||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.29  E-value=0.0099  Score=44.70  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.28  E-value=0.01  Score=46.41  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45999999999999999999764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.28  E-value=0.01  Score=45.73  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.27  E-value=0.0095  Score=46.95  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.|+|.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999999763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.22  E-value=0.01  Score=47.00  Aligned_cols=24  Identities=21%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-+++.|++|+|||+|++.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346777899999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.21  E-value=0.013  Score=46.39  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .....++|.|++|+|||+|++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999987654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.19  E-value=0.014  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.17  E-value=0.011  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+|.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.14  E-value=0.011  Score=49.53  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ++.|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.12  E-value=0.011  Score=48.52  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.|+|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.11  E-value=0.018  Score=42.62  Aligned_cols=28  Identities=14%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....-+.|+|.|.+||||||+.+.|...
T Consensus         8 ~~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            8 HHHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.08  E-value=0.013  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.04  E-value=0.012  Score=49.85  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.03  E-value=0.012  Score=47.01  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.01  E-value=0.011  Score=44.35  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+++.|++|+|||+++..++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.99  E-value=0.02  Score=44.57  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....++|.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999999774

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.98  E-value=0.013  Score=46.54  Aligned_cols=86  Identities=12%  Similarity=0.101  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCCchhhhh--h--hHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRA--V--TSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      ...+.|+||+|......  +  ....+.  ..+.+++|+|....  ...+..+...+..   .+. .-+|+||.|.... 
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~~-~giVltk~D~~~~-  254 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VPV-NQYIFTKIDETTS-  254 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SCC-CEEEEECTTTCSC-
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CCC-CEEEEeCCCcccc-
Confidence            35688999999654322  1  112222  36778899987742  2333333332221   122 3456699997532 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEec
Q 027292          139 AVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                         ...+.......+.++..+.
T Consensus       255 ---~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 ---LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---CHHHHHHHHTCSCCCSEEC
T ss_pred             ---hhHHHHHHHHHCcCEEEEE
Confidence               2355667777888755443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.97  E-value=0.019  Score=45.45  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|+|++|+|||+|++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            347999999999999999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.94  E-value=0.013  Score=45.81  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -++|+|++|+|||||+..++.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.94  E-value=0.011  Score=44.98  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=17.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-+++.|++|+||||++-.++.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~   34 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLH   34 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            4577889999999998876654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.91  E-value=0.015  Score=47.57  Aligned_cols=19  Identities=26%  Similarity=0.499  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027292           20 VVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~   38 (225)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5599999999999999986

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.85  E-value=0.016  Score=45.77  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...++|.|++|+|||+|++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.015  Score=48.56  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|++.|+||+|||+|++++++.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.85  E-value=0.015  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.|+|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.83  E-value=0.015  Score=50.59  Aligned_cols=22  Identities=41%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+.++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999998774

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.79  E-value=0.015  Score=47.18  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.78  E-value=0.017  Score=46.12  Aligned_cols=86  Identities=16%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCchhhhhh-------hHhhh-----cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           66 VKAQIWDTAGQERYRAV-------TSAYY-----RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      +.+.++||||.......       ....+     ...|.+++|+|....  .+.+.. ...+.+..  +. .-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i-~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NV-TGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CC-CEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CC-CEEEEeCCC
Confidence            45889999995321111       01111     247889999998732  122221 22233221  22 345679999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292          134 LEEQRAVPTEDAKEFAQKEGLFFLETSA  161 (225)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (225)
                      ....    ...+..+....+.|+..+..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            6531    22366777788888766644

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.021  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.|.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            48999999999999999998743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.016  Score=48.45  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.|++.|+||+|||.|++++++.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.76  E-value=0.017  Score=43.86  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -++|+|++|+|||+|+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999887754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.75  E-value=0.02  Score=43.65  Aligned_cols=25  Identities=16%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..-++..|+|.+||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3468999999999999999998854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.74  E-value=0.017  Score=50.24  Aligned_cols=22  Identities=45%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998774

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.74  E-value=0.016  Score=43.11  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.71  E-value=0.017  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+|.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.70  E-value=0.018  Score=47.99  Aligned_cols=24  Identities=25%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..-|+|+|.+||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356889999999999999998753

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.69  E-value=0.17  Score=38.30  Aligned_cols=87  Identities=16%  Similarity=0.042  Sum_probs=57.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA  145 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (225)
                      +.+.++|+|+...  ......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+...  ....   
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~---  190 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS---  190 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence            5689999988542  23445677899999998875 55666667777777655433455788899998653  2233   


Q ss_pred             HHHHHHcCCeEEEec
Q 027292          146 KEFAQKEGLFFLETS  160 (225)
Q Consensus       146 ~~~~~~~~~~~~~~S  160 (225)
                      +.+.+.++.+++.+-
T Consensus       191 ~~~~~~~~~~v~~~i  205 (245)
T 3ea0_A          191 DEIEKVIGRPISKRI  205 (245)
T ss_dssp             HHHHHHHTSCEEEEE
T ss_pred             HHHHHHhCCCeEEEC
Confidence            334445677766553

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.65  E-value=0.021  Score=43.52  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.64  E-value=0.019  Score=45.94  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.019  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .--|++.|+||+|||+|++++++.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.61  E-value=0.027  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.60  E-value=0.022  Score=42.12  Aligned_cols=21  Identities=43%  Similarity=0.476  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|.|.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.58  E-value=0.019  Score=49.50  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.57  E-value=0.023  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|+|++|+|||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.57  E-value=0.019  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998774

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.56  E-value=0.022  Score=45.48  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.54  E-value=0.022  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.51  E-value=0.028  Score=45.74  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..+|+|+|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999987754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.50  E-value=0.022  Score=49.78  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .++|+|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998854

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.021  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      --|++.|+||+|||.|++++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            46999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.48  E-value=0.022  Score=45.93  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.44  E-value=0.023  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4699999999999999998865

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.42  E-value=0.025  Score=41.39  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.41  E-value=0.01  Score=46.06  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999976

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.39  E-value=0.025  Score=45.23  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=94.39  E-value=0.029  Score=46.44  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHH
Q 027292           15 DYVFKVVLIGDSAVGKSQILARF   37 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l   37 (225)
                      ...+|++++|...|||||++..+
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHH
Confidence            35899999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.36  E-value=0.027  Score=42.00  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -.+|+|+.|+|||||+.++..
T Consensus        25 ~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            457889999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.35  E-value=0.024  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.34  E-value=0.022  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|++|+|||||+..++..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.32  E-value=0.024  Score=45.63  Aligned_cols=22  Identities=14%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+|||+|++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.29  E-value=0.017  Score=50.40  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+.++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.27  E-value=0.019  Score=44.53  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....|+|.|..|+||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999988653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.27  E-value=0.021  Score=46.36  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.27  E-value=0.015  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+.++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999987663

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.26  E-value=0.025  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcC
Q 027292           20 VVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      ++|+|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999988543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.23  E-value=0.025  Score=46.00  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+|.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.20  E-value=0.027  Score=43.54  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ..|+|.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            579999999999999999997653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.18  E-value=0.02  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+.++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.16  E-value=0.027  Score=46.96  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .--|++.|+||+|||.|++++++.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            346999999999999999999874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.16  E-value=0.027  Score=46.09  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|.|++|+|||+|++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.16  E-value=0.024  Score=48.02  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+++|+|++|+|||+|++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.14  E-value=0.038  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-|+|+|++|||||+|...|..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4588999999999999999975

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.13  E-value=0.026  Score=47.34  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.++|.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.10  E-value=0.028  Score=45.75  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...|+|.|++|+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.09  E-value=0.03  Score=45.52  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.|+|.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-54
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-54
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-51
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-50
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-50
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-49
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-48
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-48
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-47
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-45
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-44
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-44
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-43
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-39
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-39
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-38
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-38
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-36
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-35
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-34
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-33
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-33
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-32
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-31
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-31
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-29
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-29
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-29
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-26
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-25
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	7e-25
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-25
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-23
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-23
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-21
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-21
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-21
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  169 bits (428), Expect = 6e-54
 Identities = 79/170 (46%), Positives = 119/170 (70%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ RT+ +  K +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +T+AYYRGA+G MLVYDI+  +SFD+I  W+  +  HA  ++  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            ++R V  E  ++ A   G+ F+ETSA    NVENAF T+  +I   ++K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 8e-54
 Identities = 113/173 (65%), Positives = 148/173 (85%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYR +TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
              RAVPT++A+ FA+K  L F+ETSAL++TNVE AF  +LTEI+ IV++K +
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  162 bits (411), Expect = 3e-51
 Identities = 84/191 (43%), Positives = 139/191 (72%), Gaps = 1/191 (0%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT-AGEGQ 193
           +++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I   ++++NL    + +
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 183

Query: 194 GNGNPASLSGK 204
            +    +L G+
Sbjct: 184 EDKGNVNLKGQ 194

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 2e-50
 Identities = 87/165 (52%), Positives = 118/165 (71%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIGNK+DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
           E QR V  E+AK+FA++ GL FLE SA    NVE+AF+    +I+
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (402), Expect = 4e-50
 Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDT 73
           D  FKV+L+GDS VGK+ +L RF    F   +  +T+G++F+ + L +    VK Q+WDT
Sbjct: 4   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 63

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
           AGQER+R+VT AYYR A   +L+YD++ + SFD+I  WL E+  +A  ++ ++L+GNK D
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
              +R V  ED ++ A++ GL F+ETSA    NV+ AF  +  E+
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 7e-49
 Identities = 72/166 (43%), Positives = 113/166 (68%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK+VLIG++ VGK+ ++ RF +  F     ATIGV+F  +T+ I  + VK QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R++T +YYR A   +L YDI+  +SF  +P WL E+  +A   ++ +L+GNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
            E+R V  + A+EF++ + +++LETSA E+ NVE  F+ +   + +
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (392), Expect = 1e-48
 Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 1/162 (0%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K++LIGDS VGKS +L RF  ++F+     TIG++F+ +T+ I  K VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           ER+R +T+AYYRGA+G +LVYDI+  ++F +I +W + +  HA+    ++L+GNKSD+ E
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V  +  +  A++ G+ F+E+SA    NV   F T+   I
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (390), Expect = 3e-48
 Identities = 87/169 (51%), Positives = 119/169 (70%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R H+  N+VI+LIGNKSDLE
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            +R V  E+ + FA++ GL F+ETSA  A NVE AF+    EI+  + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  152 bits (384), Expect = 1e-47
 Identities = 67/164 (40%), Positives = 113/164 (68%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ +T+    K +K QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  ++L+GNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           E++R V +E  ++ A   G  F E SA +  NV+  F  ++  I
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 2e-45
 Identities = 84/171 (49%), Positives = 115/171 (67%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D++FK ++IG++  GKS +L +F   +F  DS  TIGVEF ++ + +  K VK QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
           GQER+R+VT +YYRGA GA+LVYDI+ R++++ +  WL + R  A +NIVIIL GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
           +  R V   +A  FAQ+  L FLETSAL   NVE AF+    +I N +   
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (365), Expect = 2e-44
 Identities = 68/182 (37%), Positives = 112/182 (61%), Gaps = 11/182 (6%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ + +V   +          
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 65  SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
            V  Q+WDTAGQER+R++T+A++R A+G +L++D++ +QSF ++  W+ +L+++A     
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 125 II-LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
            I LIGNK+DL +QR V    A+E A K G+ + ETSA    NVE A  T+L  I   + 
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 184 KK 185
           + 
Sbjct: 183 QC 184

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 9e-44
 Identities = 63/168 (37%), Positives = 103/168 (61%)

Query: 11  NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
           ++ +    K+++IG+S VGKS +L RF  + F  +  ATIGV+F+ +T+ +     K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
           WDTAGQER+R +T +YYRGA G +LVYD++RR +F  +  WL EL ++  +N ++ ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
               +E R V   +  +FA+K  + F+E SA     V+ AF  ++ +I
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 2e-43
 Identities = 57/164 (34%), Positives = 109/164 (66%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+V +G+ +VGK+ ++ RF  + F    +ATIG++F ++T+ ++ ++++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+R++  +Y R +  A++VYDI+   SF    +W++++R+    +++I+L+GNK+DL ++
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
           R V  E+ +  A++  + F+ETSA    NV+  F  V   +  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 64/163 (39%), Positives = 97/163 (59%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y FKVVL+G+  VGK+ ++ R+  N+F+     T+G  F T+ L I  K V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
           QER+ A+   YYR + GA+LVYDI+   SF  +  W++ELR      I + ++GNK DLE
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           ++R V  ++A+ +A+  G     TSA +   +E  F+ +   +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +KVV++G   VGKS +  +F    F      TI  +F  + + +       +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLEE 136
           ++ ++   Y +   G +LVY +  +QSF  I    +++      + + +IL+GNK DLE 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V + + +  A++ G  F+ETSA   T V+  F  ++ ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 1e-38
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 6/169 (3%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
             +FKV+L+GD  VGKS ++ R+  N+F      TIGVEF  + L +    V  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK----NIVIILIGN 130
           GQER+R++ + +YRG+   +L + +   QSF ++  W +E   +AD     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 131 KSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEI 178
           K D+ E R V TE+A+ + +  G   + ETSA +ATNV  AF   +  +
Sbjct: 124 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-38
 Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 5/169 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+G+SAVGKS ++ RF + +F    ++TIG  F T+T+ +   +VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           RY ++   YYRGA  A++VYDI+  +SF     W++EL+  A  NIVI L GNK+DL  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN 186
           RAV  ++A+ +A    L F+ETSA  + NV   FM +  ++      KN
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL-----PKN 170

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  125 bits (315), Expect = 4e-37
 Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++G   VGKS +  +F  +EF  D + T    ++ +  V+  + V+  I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQE 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            Y A+   Y+R   G + V+ I+  +SF     + E+ LR   D+N+  +L+GNKSDLE+
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E+AK  A +  + ++ETSA    NV+  F  ++ EI
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 8e-36
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N+F  +   T+  +    T++I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
            Y  +    Y      ++ + +    SF+++        +H       +L+G + DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 138 RAV------------PTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
            +               E A++ A+  + + ++E SAL    ++N F   +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 185 KN 186
           K 
Sbjct: 183 KK 184

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 8e-36
 Identities = 53/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +  +N F  +   TI   ++ +  VI  ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
            Y A+   Y R   G + V+ I+  +SF+ I ++ E+++   D  ++ ++L+GNK D   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            R V +  A++ A+  G+ ++ETSA     VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 1e-35
 Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 1   MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
           MA G G          + K V++GD AVGK+ +L  +A + F  +   T+  +    ++ 
Sbjct: 1   MAHGPG--------ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVT 51

Query: 61  IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
           +  K     ++DTAGQE Y  +    Y      ++ + +    SF ++            
Sbjct: 52  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 111

Query: 121 KNIVIILIGNKSDLEEQRA------------VPTEDAKEFAQKEG-LFFLETSALEATNV 167
            N+  +LIG + DL +               +  E  ++ A++ G   ++E SAL    +
Sbjct: 112 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 171

Query: 168 ENAFMTVLTEIFN 180
           +  F   +  I  
Sbjct: 172 KTVFDEAIIAILT 184

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-35
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++G   VGKS +  +F +  F      TI  +   + + +  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLE-ELRSHADKNIVIILIGNKSDLEE 136
           ++ A+   Y +   G  LVY I+ + +F+ +    E  LR    +++ +IL+GNK DLE+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 137 QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEI 178
           +R V  E  +  A++     FLE+SA    NV   F  ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 5/163 (3%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           +FK+++IGDS VGK+ +  RF    F   ++ATIGV+F+ R + I  + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 77  ERY-RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
           ER+ +++   YYR     + VYD++   SF  +P W+EE + H    +I  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEAT---NVENAFMTV 174
                VPT+ A++FA    +   ETSA       +VE  FMT+
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 69/163 (42%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+VL+G++AVGKS I+ RF  N+F+ + + TIG  F T+ + I   +VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL---E 135
           + ++   YYR A  A++VYD+++ QSF     W++EL   A K+I+I L+GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +R V  E+ ++ A+++GL F ETSA    NV + F+ +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (296), Expect = 2e-34
 Identities = 68/161 (42%), Positives = 98/161 (60%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV L+GD+ VGKS I+ RF  + F  +   TIG  F T+T+  Q++  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           R+RA+   YYRG+  A++VYDI++ ++F  +  W+ ELR H   +IV+ + GNK DL + 
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           R V   DAK++A      F+ETSA  A N+   F+ +   I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 1e-33
 Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +++V++G   VGKS +  +F ++ F  D   TI  +  T+  VI  ++ +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
            + A+   Y R   G +LV+ ++ R SF+ I ++  + LR        +ILIGNK+DL+ 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           QR V  E+ ++ A++  + ++E SA    NV+ AF  ++  I
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
               K+V++G   VGKS +  +F ++ F  D       +  T+   +     +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD 133
           GQE + A+   Y R   G +LV+ I+ RQSF+ +   + + LR     +  ++L+GNK+D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           LE QR VP  +A  F     + + E SA    NV+ AF  ++  +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K V++GD AVGK+ +L  +  N F  +   T+  +  +  +++  K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
            Y  +    Y     +++ + +    SF+++         H   N  IIL+G K DL + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 138 RAVPTE------------DAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
           +    +                 A++ G + +LE SAL    ++  F   +  +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (283), Expect = 4e-32
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 4/175 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++GDS VGK+ ++ ++   +FS   KATIG +F T+ +++  + V  QIWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK----NIVIILIGNKSD 133
           R++++  A+YRGA   +LV+D++   +F  +  W +E    A      N   +++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT 188
           LE ++            K  + + ETSA EA NVE AF T+         +  L 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  111 bits (277), Expect = 1e-31
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           +++++G  A GK+ IL +    E       T           +++K++   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKS---DL 134
            R +   Y++   G + V D + R+  +     L   L     ++ V+++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
                +  +      +    +   T A     +      +  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           +K+V++GD  VGKS +  +F +  F  D   TI   +   T  I ++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLE-ELRSHADKNIVIILIGNKSDLEE 136
            + A+   Y R   G ++VY ++ + SF+H+ R+ +  LR    ++  +IL+ NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTVLTEI 178
            R V  +  KE A K  + ++ETSA +   NV+  F  ++  I
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 3e-31
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 16/179 (8%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++GDS  GK+ +L  FA++ F  +   T+  E  T +  I  + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE-- 136
           Y  V    Y  +   ++ +DISR ++ D + +  +        N  ++L+G KSDL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 137 ----------QRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFNIVNK 184
                     Q  V  +     A++ G   ++E SAL++ N       V T     VNK
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA--CVNK 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 4e-31
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 14/174 (8%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+V++GD A GK+ +L   ++++F      T+  E     + +  K V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
            Y  +    Y      ++ + I    S ++IP        H   N+ IIL+GNK DL   
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 138 RAV------------PTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
                            E+ ++ A + G F ++E SA     V   F       
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-31
 Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 9/165 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G  A GK+ IL +    +    +  T+G   +T      +K+VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQD 67

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           + R +   YY G  G + V D + R   D   + L  + +  + ++ +I++  NK DL +
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 137 QR---AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
                 +  +      +    +   + A     +      + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 8e-30
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           ++V + G   VGKS ++ RF +  F      T+   ++             QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI-SCDKSICTLQITDTTGSH 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLE 135
           ++ A+           +LVY I+ RQS + +    E++       ++I I+L+GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             R V + +A+  A+     F+ETSA    NV+  F  +L   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 1e-29
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV-KAQIWDTAG 75
           + KV+++GDS VGK+ ++ R+  +++S   KATIG +F T+ + +    V   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 76  QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN----IVIILIGNK 131
           QER++++  A+YRGA   +LVYD++   SF++I  W +E   HA+ N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 132 SDLEEQRAVPTEDAKEFAQKE--GLFFLETSALEATNVENAFMTVLTEIF 179
            D EE + + +E + +   K    +    TSA  A NV+ AF  +     
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-29
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
           FK+VL+GD   GK+  + R    EF     AT+GVE            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
           ++  +   YY  A  A++++D++ R ++ ++P W  +L    + NI I+L GNK D++++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
           +         F +K+ L + + SA    N E  F+ +  ++  
Sbjct: 123 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  105 bits (263), Expect = 4e-29
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E    +K TIG   +T    + +K++K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
             R     YY      + V D + +       + L  +    + ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 137 Q---RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
                 V  E      +      + +SA++   +      ++  I
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (258), Expect = 9e-29
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  R + +  + V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
           + A+T AYYRGA   +LV+  + R+SF+ I  W E++ +    +I   L+ NK DL +  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
            +  E+A+  A++  L F  TS  E  NV   F  +  + 
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+ + G + VGKS ++ RF    F  +   T+   ++ +   I  + V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQE 61

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLE-ELRSHADKNIVIILIGNKSDLEE 136
                   + R   G +LVYDI+ R SF+ +             KN+ +IL+GNK+DL+ 
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTVLTEI 178
            R V TE+ ++ A +    F E SA     N+   F  +  E+
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 1e-26
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            KV+++G    GK+ IL +F+ NE              +    I   + +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVV-----HTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
             R+  + YY      ++V D + R+        L ++ +H D     +++  NK D++E
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 137 Q---RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
                 +         +          AL    +      +++ +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 2e-26
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+ ++G  +VGKS +  +F   +F      TI     T+ + +  +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEE 136
            Y      Y     G +LVY ++  +SF+ I     +L        I I+L+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           +R +  E+ K  A+     FLE+SA E     + F  ++ E 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 4e-26
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           V+KV+L+G   VGKS +   F   E     +A        R++V+  +     ++D   Q
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLE 135
           +  R +           ++VY ++ + SF+      ++  R+    ++ IIL+GNKSDL 
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
             R V  ++ +  A      F+ETSA    NV+  F  V+ +I    + K
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 1e-25
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL +F   +       TI          ++H+  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEE 136
             R+    Y+    G + V D + RQ      R L+ L          +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 137 QRAVPTEDAKE---FAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             +             +         SA+   ++      +L +I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (239), Expect = 2e-25
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 47/207 (22%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K++L+G    GKS  + +            T G+           +SV  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 78  RYRAVTSAYYRGAVGAMLVYDIS-----------RRQSFDHIPRWLEELRSHADKNIVII 126
             R      +      M +  +S             +  +    +   +     +N  +I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKEG--------------------------LFFLETS 160
           L  NK DL E++ + +     F + +G                          ++   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 161 ALEATNVENAFMTVLTEIFNIVNKKNL 187
           A +  N+   F  V     + + + NL
Sbjct: 177 ATDTENIRFVFAAV----KDTILQLNL 199

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 2e-25
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D   +++L+G    GK+ +L + A  + S  +  T G   ++     Q +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSV----QSQGFKLNVWDIG 68

Query: 75  GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSD 133
           GQ + R    +Y+      + V D + R+ F+   + L EL        + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 134 LEEQR---AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           L        +         +         SAL    V++    V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 7e-25
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ ++GD+  GKS ++ RF    +          E   + +++  ++    I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD--LE 135
             +          +    + D +  Q+   +   L  LR      + + L+G +      
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 136 EQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
             R V    A+      +   + ET A    NV+  F  V  ++  +  ++ L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 7e-25
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDT 73
           +  ++VVLIG+  VGKS +   FA    S+DS    +G +   RTL++  +S    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 74  A-GQERYRAVTSAYYRGAVGAMLVYDISRRQSF-DHIPRWLEELRSHADKNIVIILIGNK 131
              +     +     +     ++VY I+ R SF       ++  R+   ++I IIL+GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 132 SDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
           SDL   R V   + +  A      F+ETSA    NV+  F  ++ ++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 8/165 (4%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            ++ L+G    GK+  +   A  +F+ D   T+G   +     I   +V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
           R+R++   Y RG    + + D + ++  +     L  L      + I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 137 ---QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
              ++ +  +      Q   +     S  E  N++     ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.0 bits (222), Expect = 5e-23
 Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 49/209 (23%)

Query: 17  VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
           + K++L+G    GKS  L +            T G+         + K+V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-----------LRSHADKNIVI 125
              R      +      + +   S         R               + +    N+ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEG---------------------------LFFLE 158
           IL  NK+DL E++         F + EG                           L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 159 TSALEATNVENAFMTVLTEIFNIVNKKNL 187
           T+A+   N+   F  V   I       NL
Sbjct: 175 TTAINTENIRLVFRDVKDTIL----HDNL 199

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (214), Expect = 1e-21
 Identities = 32/191 (16%), Positives = 52/191 (27%), Gaps = 24/191 (12%)

Query: 12  QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIW 71
           Q      +++L+G    GKS I+ +            T G+         Q   V   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFETK----FQVDKVNFHMF 52

Query: 72  DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-----------LRSHAD 120
           D  GQ   R      +      + V   S                           +   
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112

Query: 121 KNIVIILIGNKSDLEEQRAVPTEDA-----KEFAQKEGLFFLETSALEATNVENAFMTVL 175
           + I +IL  NK DL  ++ +  +        EFA+            E   V  A   + 
Sbjct: 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 172

Query: 176 TEIFNIVNKKN 186
            E   I     
Sbjct: 173 DEFLRISTASG 183

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.4 bits (210), Expect = 3e-21
 Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 50/206 (24%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K++L+G    GKS I+ +      +       G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIV----ETHFTFKDLHFKMFDVGGQR 53

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSF-----------DHIPRWLEELRSHADKNIVII 126
             R      + G    +    +S                + +  +     +    +  II
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKEG--------------------------LFFLETS 160
           L  NK DL E++   +     + +  G                          ++   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 161 ALEATNVENAFMTVLTEIFNIVNKKN 186
           A +  NV+  F  V     +++ K N
Sbjct: 174 ATDTKNVQFVFDAV----TDVIIKNN 195

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
           K++ +G    GK+ +L     +  +     T+   +   +  +   ++K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
            R +   Y+    G + + D +  + FD     L+ L + A+ K++  +++GNK D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 138 RAV----------PTEDAKEFAQKEGLFFLETSALEATNVENAF 171
            +            T  ++    +  +     S +       AF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 8e-21
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            +++++G    GK+ IL R    E       T           + +K++K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEE 136
             R     YY      + V D   R         L  +      +  ++++  NK D+E+
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 137 QRAV---PTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
                           +       +TSA + T ++ A   ++  + +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (185), Expect = 2e-17
 Identities = 23/172 (13%), Positives = 55/172 (31%), Gaps = 12/172 (6%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
            V+ +G    GK+ +  R    ++  D++ +I        +     +    I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 79  YRAVTSAYYRGAVGAMLVYDISRRQSF----DHIPRWLEELRSHADKNIVIILIGNKSDL 134
              +   +   A   + V D +  Q            +         +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 135 EEQRAVPTEDAKEFAQKEGLFFLET-----SALEATNVENAFMTVLTEIFNI 181
               A   +  ++  +KE      T     S L++++   A +    + F  
Sbjct: 121 AM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 170

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 21/177 (11%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
            K+V +G    GK+ +L     +                 +  +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 78  RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWL-EELRSHADKNIVIILIGNKSDLEE 136
           + R V   Y     G + + D +  +        L   +      N+ I+++GNK D  E
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 137 QRAV---------------PTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
             +                    + +      L     S L+       F  +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 16  YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
           Y   +++ G    GK+ +L     +      + T+  +         +      + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLS--AADYDGSGVTLVDFPG 55

Query: 76  QERYRAVTSAYYRGAVGA-----MLVYDISRRQSFDHIPRWLEELRSH----ADKNIVII 126
             + R   S Y +           +V      +       +L ++ S      +  I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 127 LIGNKSDLEEQRAVPTEDAKEFAQKE----------GLFFLETSALEATNVENAFMTVLT 176
           +  NKS+L    A P    K+  + E           L  +E    E    EN    + +
Sbjct: 116 IACNKSELFT--ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 177 E 177
            
Sbjct: 174 T 174

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (114), Expect = 6e-08
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA--- 74
            KVV+ G    GKS +L   A  E ++ +    G         I    +   I DTA   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 75  -----GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129
                 +             A   + + D +   + D    W E +     K  + + + 
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITV-VR 119

Query: 130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169
           NK+D+       T +    ++  G   +  SA     V+ 
Sbjct: 120 NKADI-------TGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 9/156 (5%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKA------TIGVEFQTRTLVIQHKSVKAQIWDT 73
           V L+G    GKS +LA   R    +           +GV   +         +   I   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 74  AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKS 132
           +  +        +       + V D +            E             ++  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168
           DL E+ AV  +   +   +EGL  L  SAL    + 
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLP 157

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 14/170 (8%)

Query: 13  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 72
           +I    KV ++G   VGKS +       E +L S    G         +     K    D
Sbjct: 4   EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 73  TAGQERYRAVTSAYYRGAVGAMLVYDISR--------RQSFDHIPRWLEELRSHADKNIV 124
           TAG  R   V            +V  I +          +     +          +   
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-----FLETSALEATNVEN 169
            +++ NK DL   R    ++  +  +++  F      + TSA +  N++ 
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 9/121 (7%)

Query: 18  FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI--WDTAG 75
             V + G++  GKS  +          +  A  GV   T             +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 76  QERYRAVTSAY---YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS 132
                     Y    +       +   + R   + I    + +     K    +    K 
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI-DIAKAISMM-KKEFYFVR--TKV 172

Query: 133 D 133
           D
Sbjct: 173 D 173

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 22/176 (12%), Positives = 46/176 (26%), Gaps = 11/176 (6%)

Query: 15  DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
           D   +V   G S  GKS  L      +    +  T G         +        +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 75  GQ-------ERYRAVTSAYYRGAVGAMLVYDISRRQSF--DHIPRWLEELRSHADKNIVI 125
                     +++     Y         +  +   +    D   + +E         +V+
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFN 180
           +   +K     ++A      +      G       S+L+   V+      L   F+
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK-LRQKLDTWFS 188

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 5/153 (3%)

Query: 19  KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG--Q 76
           ++V++G   VGKS +L R    + ++ +    G      +  I  + +  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 77  ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
           E    V        +  +   DI         P   E+ +          L+        
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169
           ++    E   +      +     SAL+   +E 
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLEK 151

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 24/186 (12%)

Query: 20  VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTR---------TLVIQHKSVKAQI 70
           ++  G S VGKS ++ R    +     +  +  +                        + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 71  WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH-------ADKNI 123
                ++          +    A+LV D               E+           + +I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKE----GLFFLETSALEATNVENAFMTVLTEIF 179
             I+  NK D  +          E  +         F+  SA    N+E     +   IF
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER----LKNRIF 178

Query: 180 NIVNKK 185
            ++ ++
Sbjct: 179 EVIRER 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.87
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.86
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.74
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.73
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.52
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.21
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.15
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.12
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.03
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.93
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.85
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.35
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.25
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.22
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.21
d1okkd2	207	GTPase domain of the signal recognition particle r	98.21
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.12
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.9
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.44
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.42
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.36
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.31
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.29
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.29
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.2
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.19
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.16
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.14
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.11
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.02
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.0
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.98
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.89
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.88
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.86
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.81
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.8
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.79
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.68
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.66
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.64
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.64
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.62
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.6
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.58
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.56
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.56
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.55
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.54
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.52
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.51
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.5
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.49
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.49
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.49
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.46
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.46
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.45
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.45
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.44
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.42
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.37
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.34
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.32
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.3
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.29
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.29
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.27
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.19
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.18
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.15
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.12
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.08
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.07
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.05
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.05
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.98
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.96
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.95
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.95
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.81
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.78
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.77
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.76
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.65
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.58
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.55
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.54
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.46
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.44
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.39
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.34
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.24
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.2
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.19
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.11
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.91
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.55
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.47
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.39
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.37
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.29
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.28
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.25
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.23
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.09
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.07
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.01
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.0
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.0
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.95
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.94
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.82
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.79
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.76
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.66
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.55
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.53
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.42
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.13
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.11
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.02
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.01
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.0
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.99
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.73
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.57
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.52
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.47
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.46
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.25
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.15
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.08
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.98
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.77
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.43
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.07
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.68
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.28
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.02
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.54
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.03
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.1
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.52
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.52
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.12
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.08
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.51
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.17
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.05
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.0
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.59
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	82.53
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.76
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	80.56
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.35

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-36  Score=224.40  Aligned_cols=167  Identities=40%  Similarity=0.786  Sum_probs=156.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+......+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46889999999999999999999999999999999988899988888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||+++.+++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++++++++++++||++|.||+++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999998887777778999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027292          174 VLTEIFN  180 (225)
Q Consensus       174 l~~~~~~  180 (225)
                      |++.+++
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=223.47  Aligned_cols=169  Identities=43%  Similarity=0.788  Sum_probs=158.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            46789999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      ++|||+++..+++.+..|+..+.+......|++||+||+|+.+...+..++++.+++.+++++++|||++|.||+++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999988877778999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          174 VLTEIFNIV  182 (225)
Q Consensus       174 l~~~~~~~~  182 (225)
                      |++.+++..
T Consensus       162 l~~~l~~~~  170 (171)
T d2ew1a1         162 LACRLISEA  170 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=222.26  Aligned_cols=173  Identities=49%  Similarity=0.815  Sum_probs=161.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +.++.+||+|+|++|||||||+++|..+.+...+.++.+.......+..++....+.+|||+|++.+..++..+++.+|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            35788999999999999999999999999999999998888888888888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||.++.+++..+..|+..+......+.|+++|+||+|+..........+..+++.++++|+++||++|.|++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999999888777899999999999987788888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027292          173 TVLTEIFNIVNKK  185 (225)
Q Consensus       173 ~l~~~~~~~~~~~  185 (225)
                      ++++.++++++..
T Consensus       161 ~l~~~i~~~~~~~  173 (174)
T d2bmea1         161 QCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999886654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=220.92  Aligned_cols=164  Identities=53%  Similarity=0.918  Sum_probs=155.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            67899999999999999999999999999999998889999889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||+++.++++.+..|+..+.+......|+++++||+|+........++++.+++.++++|+++||++|.||+++|++|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988887889999999999998878888889999999999999999999999999999999


Q ss_pred             HHHH
Q 027292          175 LTEI  178 (225)
Q Consensus       175 ~~~~  178 (225)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-36  Score=221.01  Aligned_cols=173  Identities=65%  Similarity=1.091  Sum_probs=158.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.+.......+..++..+.+.+||++|++.|..++..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            67899999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      +|||.+++.++..+..|+..+.+....+.|++||+||+|+.+.+....+....+...++.+++++||++|.|++++|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999998888789999999999998777778788888999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027292          175 LTEIFNIVNKKNL  187 (225)
Q Consensus       175 ~~~~~~~~~~~~~  187 (225)
                      ++.+.+...+++.
T Consensus       162 ~~~i~~~~~~~qi  174 (175)
T d2f9la1         162 LTEIYRIVSQKQI  174 (175)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHhhhccC
Confidence            9999988877654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-36  Score=222.30  Aligned_cols=163  Identities=36%  Similarity=0.648  Sum_probs=153.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999988888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ||+++..+++.+..|+..+..... +.|++||+||+|+.+.+.+..++++.++++++++|+++||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999987765 7999999999999887888999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027292          177 EIFN  180 (225)
Q Consensus       177 ~~~~  180 (225)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8863

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=223.04  Aligned_cols=165  Identities=39%  Similarity=0.717  Sum_probs=149.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+..........++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999989998888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||++++++++.+..|+..+........|++||+||+|+.+.+.+..++++.++++++++|+++||++|.||+++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999988777766889999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=221.90  Aligned_cols=170  Identities=30%  Similarity=0.490  Sum_probs=153.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ++..++||+|+|++|||||||+++|+.+.+...+.++. .+.....+.+++..+.+.+||++|.+.+..++..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45678999999999999999999999999988887774 45556677888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      +|+|||+++..+++.+..|+..+.+.. ..+.|++||+||+|+.+.+....++++.+++.++++|++|||++|.||+++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999999887654 4579999999999998878888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027292          172 MTVLTEIFNIVN  183 (225)
Q Consensus       172 ~~l~~~~~~~~~  183 (225)
                      +.|++.+.++.+
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999877543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-36  Score=220.03  Aligned_cols=166  Identities=27%  Similarity=0.355  Sum_probs=135.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|.+..+... .++ ..+.+...+..++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            47999999999999999999998765433 233 3444556677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.+++.++++|+++||++|.|++++|++|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999999877653 5789999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027292          176 TEIFNIVNK  184 (225)
Q Consensus       176 ~~~~~~~~~  184 (225)
                      +.+..++..
T Consensus       159 ~~i~~~~~~  167 (168)
T d2gjsa1         159 RQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhC
Confidence            998776543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=218.45  Aligned_cols=169  Identities=51%  Similarity=0.907  Sum_probs=154.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|++|||||||++++.++.+...+.++.+..............+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            57899999999999999999999999999988888888888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||++++.+++.+..|+..+.+....+.|++||+||+|+...+....+++..+++.++++|+++||++|.||+++|.+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888777899999999999988778888999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027292          176 TEIFNIVNK  184 (225)
Q Consensus       176 ~~~~~~~~~  184 (225)
                      +.+++..++
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999877654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-35  Score=216.76  Aligned_cols=164  Identities=30%  Similarity=0.491  Sum_probs=149.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +++||+++|++|||||||+++++++.+...+.++.+.. ....+..++..+.+.+||++|.+.+..++..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            47999999999999999999999999988888876644 45566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC-CHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMT  173 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~f~~  173 (225)
                      |||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++.++++.++++|+++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999987665 4579999999999999888899999999999999999999999986 99999999


Q ss_pred             HHHHHHH
Q 027292          174 VLTEIFN  180 (225)
Q Consensus       174 l~~~~~~  180 (225)
                      |++.+++
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-36  Score=220.77  Aligned_cols=171  Identities=46%  Similarity=0.821  Sum_probs=131.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      ..++.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            46789999999999999999999999999988888998889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||.|+........+++..++...+++|+++||++|.||.++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999878777899999999999988778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027292          173 TVLTEIFNIVN  183 (225)
Q Consensus       173 ~l~~~~~~~~~  183 (225)
                      +|++.+.+++.
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999987765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.4e-35  Score=218.64  Aligned_cols=164  Identities=34%  Similarity=0.574  Sum_probs=147.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|++|||||||+++|+.+.+...+.+|.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            4689999999999999999999999998888888776554 566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||+++..+++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++++.+++.++++|+++||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987765 4589999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-35  Score=219.81  Aligned_cols=175  Identities=47%  Similarity=0.828  Sum_probs=163.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .++.+||+|+|.+|||||||+++|..+.+...+.++.+..+....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            57889999999999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |+|||+++.+++..+..|+..+.+....+.|++||+||+|+.+...+..++...++...++.|+++||++|.|++++|++
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999999999888777778999999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 027292          174 VLTEIFNIVNKKNLT  188 (225)
Q Consensus       174 l~~~~~~~~~~~~~~  188 (225)
                      |++.+.+...+....
T Consensus       163 l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         163 MARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHhhhcccC
Confidence            999998876655543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=215.96  Aligned_cols=161  Identities=35%  Similarity=0.756  Sum_probs=151.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      |+++..+++.+..|+..+......+.|++||+||+|+.+.+....+++.++++.++++|+++||++|.||+++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777789999999999998878888899999999999999999999999999999999886


Q ss_pred             H
Q 027292          178 I  178 (225)
Q Consensus       178 ~  178 (225)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-35  Score=215.06  Aligned_cols=163  Identities=42%  Similarity=0.730  Sum_probs=154.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|.+|||||||+++|..+.+...+.++.+..........+.....+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999998888888888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||++++++++.+..|+..+......+.|++||+||+|+.+.+.+..++++++++.++++|+++||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999998888878999999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027292          176 TEI  178 (225)
Q Consensus       176 ~~~  178 (225)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=215.40  Aligned_cols=164  Identities=29%  Similarity=0.433  Sum_probs=149.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+..++..+.+.+||++|.+.+..++..++..+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            568999999999999999999999999888888877664 4567788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||++++++++.+..|+..+.+.. ..+.|++||+||+|+...+.+..+++++++++++++|+++||++|.||+++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999999999887665 4579999999999998878889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          175 LTEIFN  180 (225)
Q Consensus       175 ~~~~~~  180 (225)
                      ++.+.+
T Consensus       162 i~~~~K  167 (167)
T d1xtqa1         162 ILEAEK  167 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=217.61  Aligned_cols=162  Identities=27%  Similarity=0.404  Sum_probs=145.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|++|||||||+++|+++.+...+.+|.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++|+
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999999888888877544 4456678899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT  173 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~  173 (225)
                      |||++++++++.+..|+..+.+...  .+.|++||+||+|+.+.+.+..++++++++.++++|+++||++|.||+++|+.
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988876543  57899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          174 VLTEI  178 (225)
Q Consensus       174 l~~~~  178 (225)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=219.14  Aligned_cols=171  Identities=40%  Similarity=0.719  Sum_probs=152.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC----------EEEEEEEEeCCCchhhhhhh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------KSVKAQIWDTAGQERYRAVT   83 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~   83 (225)
                      .++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.|..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            46789999999999999999999999999888888877777776665433          34679999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL  162 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (225)
                      ..+++.+|++|+|||+++..+++.+..|+..+.... ....|++||+||.|+.+.+.+..+++.+++++++++|+++||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            999999999999999999999999999998776554 3568899999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027292          163 EATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      +|.||+++|++|++.++++.++
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999877654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=212.80  Aligned_cols=164  Identities=32%  Similarity=0.542  Sum_probs=145.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888888765 55566777889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||.+++.+++.+..|+..+.... ..+.|++||+||+|+.+.+.+..+++.+++++++++|++|||++|.|++++|+.|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999998876554 45799999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          176 TEIFNI  181 (225)
Q Consensus       176 ~~~~~~  181 (225)
                      +.+.++
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=212.68  Aligned_cols=164  Identities=45%  Similarity=0.772  Sum_probs=154.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      -.+||+|+|++|||||||+++|..+.+...+.++.+..............+.+.+||++|++.+..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35799999999999999999999999999999999988888888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||..+.++++.+..|+..+.+....+.|++||+||+|+.+.+.++.++++++++.++++|+++||++|.||+++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887777899999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 027292          176 TEIF  179 (225)
Q Consensus       176 ~~~~  179 (225)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=214.69  Aligned_cols=165  Identities=25%  Similarity=0.464  Sum_probs=143.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG   92 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (225)
                      +....+||+|+|++|||||||+++|+.+.+...+.+|.+ +.....+...+..+.+.+||++|++.+..++..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            466789999999999999999999999999888888875 4455666677888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEE
Q 027292           93 AMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEG-LFFLE  158 (225)
Q Consensus        93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  158 (225)
                      +++|||++++++++.+.. |+..+... ..+.|+++|+||+|+.+            .+.+..+++.+++++++ +.|+|
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999988755 55555544 45899999999999864            35678889999999988 68999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027292          159 TSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       159 ~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      |||++|.||+++|+.+++.++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999999885

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-34  Score=210.11  Aligned_cols=167  Identities=43%  Similarity=0.741  Sum_probs=144.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      -.+..+||+|+|+++||||||+++|..+.+...+ .++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            3678999999999999999999999999876544 555567778777888999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ++++|||+++..++..+..|+..+........|+++|+||.|+.+...+..+++..+++.++++|+++||++|.|++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999988888777789999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027292          172 MTVLTEIF  179 (225)
Q Consensus       172 ~~l~~~~~  179 (225)
                      ++|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-34  Score=210.51  Aligned_cols=163  Identities=42%  Similarity=0.765  Sum_probs=151.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      .++||+|+|++|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            47999999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE---QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |||++++.+++.+..|+..+........|+++++||+|+.+   .+.+..++++++++.++++|+++||++|.||+++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888877777899999999999854   467788999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          173 TVLTEI  178 (225)
Q Consensus       173 ~l~~~~  178 (225)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-34  Score=210.02  Aligned_cols=164  Identities=31%  Similarity=0.464  Sum_probs=144.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|+.+.+...+.||.+.++.. .+..++..+.+.+||++|.+.+. .+..+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999999999987766544 45567889999999999998775 456688899999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC-CHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTV  174 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~f~~l  174 (225)
                      ||++++.+++.+..|+....... ..+.|+++|+||+|+.+.+.++.++++.++++++++|+++||++|. +|+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998877665544 3589999999999998878889999999999999999999999998 599999999


Q ss_pred             HHHHHHHH
Q 027292          175 LTEIFNIV  182 (225)
Q Consensus       175 ~~~~~~~~  182 (225)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=213.60  Aligned_cols=162  Identities=24%  Similarity=0.385  Sum_probs=141.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      ++||+|+|++|||||||+++|+.+.+...+.++.+. ........++..+.+.+||++|++.|..++..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            689999999999999999999999998888888764 4455566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEeccCC
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEG-LFFLETSALE  163 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  163 (225)
                      ||+++++|++.+..|+.........+.|+++|+||+|+.+            ...+..+++++++++.+ +.|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999997655554445555899999999999853            34578889999998865 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIF  179 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~  179 (225)
                      |.||+++|+.+++.++
T Consensus       162 ~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         162 QKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-34  Score=210.77  Aligned_cols=163  Identities=28%  Similarity=0.421  Sum_probs=142.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      ..||+|+|++|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            46999999999999999999999999888888865 44455667788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      ||++++++++.+..|+.........+.|++||+||+|+.+            .+.+..++++.++++++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999987765555454556899999999999964            245778889999999984 799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEIFN  180 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~~~  180 (225)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998873

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=210.63  Aligned_cols=163  Identities=29%  Similarity=0.516  Sum_probs=147.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            368999999999999999999999999888888765 4555667788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      |||++++.++..+..|+..+..... .+.|++||+||+|+.+.+....++++.+++.++++|+++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988876543 579999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          175 LTEIF  179 (225)
Q Consensus       175 ~~~~~  179 (225)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=207.58  Aligned_cols=162  Identities=33%  Similarity=0.579  Sum_probs=146.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            5899999999999999999999999988888887766554 455678899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      ||++++.+++.+..|+..+.+... .+.|+++|+||+|+.. +....++++.+++.++++|+++||++|.|++++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999999887764 5799999999999975 56778889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027292          176 TEIFN  180 (225)
Q Consensus       176 ~~~~~  180 (225)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-34  Score=209.26  Aligned_cols=165  Identities=44%  Similarity=0.788  Sum_probs=147.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL  175 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~  175 (225)
                      |||.+++.+++.+..|+..+........|++++++|.|+.+ +....++++.++.+++++++++||++|.||+++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999988888877899999999999875 56678889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027292          176 TEIFNI  181 (225)
Q Consensus       176 ~~~~~~  181 (225)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=208.28  Aligned_cols=169  Identities=41%  Similarity=0.751  Sum_probs=155.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      .-+++||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..++..+|++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999999998888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM  172 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~  172 (225)
                      |+|||++++.+++.+..|+..+.+... ...|+++++||.|... +.+...+++.+++.+++.|+++||++|.|++++|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999877653 5689999999999865 67788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027292          173 TVLTEIFNIVN  183 (225)
Q Consensus       173 ~l~~~~~~~~~  183 (225)
                      +|++.+++..+
T Consensus       163 ~l~~~l~~~p~  173 (177)
T d1x3sa1         163 ELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHTSGG
T ss_pred             HHHHHHccCcc
Confidence            99999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-35  Score=215.10  Aligned_cols=162  Identities=30%  Similarity=0.587  Sum_probs=142.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      -+||+|+|++|||||||+++|+++.+...+.+|.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999999999999999988888888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT  176 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~  176 (225)
                      ||++++++++.+..|+..+..... +.|+++|+||+|+......  ++...++...+++|+++||++|.||+++|++|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999877665 8999999999999764432  3455778888999999999999999999999999


Q ss_pred             HHHHH
Q 027292          177 EIFNI  181 (225)
Q Consensus       177 ~~~~~  181 (225)
                      .++..
T Consensus       160 ~l~~~  164 (170)
T d1i2ma_         160 KLIGD  164 (170)
T ss_dssp             HHHTC
T ss_pred             HHccC
Confidence            88643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=207.95  Aligned_cols=162  Identities=29%  Similarity=0.513  Sum_probs=146.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            58999999999999999999999999888888876554 45566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTV  174 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~l  174 (225)
                      ||++++.+++.+..|+..+.+.. ..+.|++||+||+|+........+++..+++++ +++|+++||++|.||+++|++|
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999887654 457999999999999887888888888988874 6889999999999999999999


Q ss_pred             HHHHH
Q 027292          175 LTEIF  179 (225)
Q Consensus       175 ~~~~~  179 (225)
                      ++.+.
T Consensus       162 ~~~i~  166 (167)
T d1c1ya_         162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98774

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=206.32  Aligned_cols=165  Identities=28%  Similarity=0.388  Sum_probs=142.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCC---chhhhhhhHhhhcCCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAG---QERYRAVTSAYYRGAV   91 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d   91 (225)
                      ..+||+|+|++|||||||+++|.+..+.. ...++.+.+.....+..++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            56999999999999999999999877654 3445666777888888899999999999765   4444  5677899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++|+|||+++..+++.+..|+..+.... ..+.|++||+||+|+.+.+.+..++++++++.++++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999999887654 357999999999999887888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          171 FMTVLTEIFNIV  182 (225)
Q Consensus       171 f~~l~~~~~~~~  182 (225)
                      |+.|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=203.62  Aligned_cols=166  Identities=39%  Similarity=0.702  Sum_probs=147.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ++..+||+|+|++|||||||+++|..+.+...+.++.+...........+..+.+.+||++|...+...+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            46789999999999999999999999999999999988888888888889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVE  168 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  168 (225)
                      ++++|.++..+++.+..|+..+.....    .+.|++||+||+|+.+ +.+..+++++++++.+ ++|+++||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            999999999999999999988766542    4689999999999975 6788889999998864 889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFN  180 (225)
Q Consensus       169 ~~f~~l~~~~~~  180 (225)
                      ++|++|++.+++
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-33  Score=206.24  Aligned_cols=167  Identities=37%  Similarity=0.682  Sum_probs=133.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +.+||+|+|++|||||||+++|.++.+...+.++.+.......... +.....+.+|||+|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            4689999999999999999999999998888887776666655553 345677899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHcC-CeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQ-RAVPTEDAKEFAQKEG-LFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  168 (225)
                      +|||+++..+++.+..|+..+.....    .+.|++||+||+|+.+. +.+..++++++++.++ ++|+++||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            99999999999999999998876542    47899999999999764 3467788999998886 789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          169 NAFMTVLTEIFNIV  182 (225)
Q Consensus       169 ~~f~~l~~~~~~~~  182 (225)
                      ++|++|++.++++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-33  Score=207.59  Aligned_cols=173  Identities=38%  Similarity=0.674  Sum_probs=153.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999998999888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      ||.++..+++.+..|+..+.....    .+.|+++|+||+|+.+ .....++...++. ..+++|+++||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988866542    3689999999999976 4566666666654 567899999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccC
Q 027292          172 MTVLTEIFNIVNKKNLTAG  190 (225)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~  190 (225)
                      ++|++.+++...+.+..+.
T Consensus       161 ~~l~~~i~~~~~~~~~~~~  179 (184)
T d1vg8a_         161 QTIARNALKQETEVELYNE  179 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccCC
Confidence            9999999998776655443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-33  Score=206.34  Aligned_cols=163  Identities=27%  Similarity=0.486  Sum_probs=141.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..+||+|+|++|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4679999999999999999999999999888888865 445566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEec
Q 027292           95 LVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEG-LFFLETS  160 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  160 (225)
                      +|||+++..+++.+.. |+..+.. ...+.|++||+||+|+.+            .......+...++++++ +.|+|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            9999999999999876 5555544 445899999999999853            23456677888888887 7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027292          161 ALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       161 a~~~~~v~~~f~~l~~~~~  179 (225)
                      |++|.||+++|+.|++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999885

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-32  Score=201.11  Aligned_cols=160  Identities=42%  Similarity=0.739  Sum_probs=145.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-VTSAYYRGAVGAM   94 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i   94 (225)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+................+.+||++|...+.. .+..+++.+|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            368999999999999999999999999999999988888888888999999999999999887754 5677899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC---CCCHHHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE---ATNVENA  170 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~  170 (225)
                      +|||++++++++.+..|+..+.+.. ..+.|++||+||+|+.+.+.+..+++++++++++++|+++||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999987765 35799999999999988788899999999999999999999987   5599999


Q ss_pred             HHHHH
Q 027292          171 FMTVL  175 (225)
Q Consensus       171 f~~l~  175 (225)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-32  Score=202.64  Aligned_cols=163  Identities=28%  Similarity=0.449  Sum_probs=141.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888888765 44445566788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292           97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE  163 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (225)
                      ||+++++|++.+..|+.........+.|++||+||+|+..            .+.+..++...++++.+. .|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999987766554444455899999999999853            356788999999999874 799999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027292          164 AT-NVENAFMTVLTEIFN  180 (225)
Q Consensus       164 ~~-~v~~~f~~l~~~~~~  180 (225)
                      |. +++++|+.+++.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.2e-31  Score=194.02  Aligned_cols=164  Identities=19%  Similarity=0.349  Sum_probs=137.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      +.+||+|+|+.|||||||+++++++.+... .++.+ +.....+.+++..+.+.+|||+|+..+.     +++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence            369999999999999999999999988543 34433 4445667789999999999999987643     6788999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEE--QRAVPTEDAKEFAQK-EGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  169 (225)
                      |||++++.|++.+..|+..+....   ..+.|+++|+||.|+..  .+.+..+++..++.+ ++++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999998887654   35679999999988743  456778888888765 468899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 027292          170 AFMTVLTEIFNIVNKKN  186 (225)
Q Consensus       170 ~f~~l~~~~~~~~~~~~  186 (225)
                      +|..+++.+++...+++
T Consensus       157 ~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence            99999999998877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=5.6e-30  Score=187.58  Aligned_cols=155  Identities=21%  Similarity=0.390  Sum_probs=127.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|..+.+...+.+|.+..+..  +..  ..+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999988888886655443  333  457899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHH-H----HHHcCCeEEEeccCCCCCHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKE-F----AQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ||+++..+++....|+..+.+.. ..+.|++||+||.|+.+..  ...++.+ +    +...++.++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999988887765543 3689999999999997532  2333222 2    2233567999999999999999


Q ss_pred             HHHHHHH
Q 027292          171 FMTVLTE  177 (225)
Q Consensus       171 f~~l~~~  177 (225)
                      |+||++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=3e-29  Score=183.74  Aligned_cols=157  Identities=23%  Similarity=0.378  Sum_probs=122.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|++|||||||+++|.+..+. ...++.+....  .+.  ...+.+.+||++|++.+...+..++..+|++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK--TLE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE--EEE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee--ecc--ccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999887653 44555443332  233  3457899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHH
Q 027292           97 YDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ||+++..++.....|+..... ....+.|++||+||+|+.+..  ..++.....     ...++.++++||++|.|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999998887666655443 334689999999999997533  333333321     122456899999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          171 FMTVLTEIFN  180 (225)
Q Consensus       171 f~~l~~~~~~  180 (225)
                      |+||++.+.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=1.5e-29  Score=187.20  Aligned_cols=159  Identities=22%  Similarity=0.344  Sum_probs=123.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV   91 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (225)
                      .+.+..+||+|+|++|||||||+++|.++.+.... ++.+.  ....+..  .++.+.+||++|++.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            34566799999999999999999999998774333 22222  2233333  3578899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCC
Q 027292           92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEAT  165 (225)
Q Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  165 (225)
                      ++|+|||+++..++..+..|+..+.... ..+.|++||+||+|+.+..  ......+.     +....+.++++||++|.
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            9999999999999999888877765443 3579999999999997632  23333322     22234669999999999


Q ss_pred             CHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTE  177 (225)
Q Consensus       166 ~v~~~f~~l~~~  177 (225)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=7.1e-29  Score=184.61  Aligned_cols=161  Identities=20%  Similarity=0.354  Sum_probs=122.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA   93 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (225)
                      ....+||+|+|.+|||||||+++|.++.+.. ..++.+....  ...  ...+.+.+||++|++.+..++..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE--TLS--YKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE--EEE--ETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEE--EEe--eCCEEEEEEecccccccchhHHhhhccceeE
Confidence            4568999999999999999999998877643 3344443332  222  2457889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCH
Q 027292           94 MLVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNV  167 (225)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v  167 (225)
                      ++|+|+++..++.....|+...... ...+.|++||+||+|+.+  .....++...     +...++.+++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999999888887665443 345799999999999975  2334443332     2233567999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027292          168 ENAFMTVLTEIFNI  181 (225)
Q Consensus       168 ~~~f~~l~~~~~~~  181 (225)
                      +++|++|++.+.++
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=3e-28  Score=179.81  Aligned_cols=156  Identities=21%  Similarity=0.404  Sum_probs=120.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+++|++|||||||+++|..+.+... .++.+...    .......+.+.+||+||.+.+...+..+++.+|++|+
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            469999999999999999999998765432 23323222    2222345788999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |+|+++..++..+..|+....+. ...+.|+++++||+|+.+.  ....++...     +...++.++++||++|+|+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999988887776544 3457999999999999753  233333322     222355699999999999999


Q ss_pred             HHHHHHHHH
Q 027292          170 AFMTVLTEI  178 (225)
Q Consensus       170 ~f~~l~~~~  178 (225)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=4.3e-27  Score=170.66  Aligned_cols=154  Identities=17%  Similarity=0.318  Sum_probs=122.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (225)
                      +||+|+|++|||||||+++|.++++...+......     ....+...+.+.+||++|.+.+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            68999999999999999999998876555433222     2223456778999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHH-----HHHHHcCCeEEEeccCCCCCHHHHH
Q 027292           98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAK-----EFAQKEGLFFLETSALEATNVENAF  171 (225)
Q Consensus        98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~~f  171 (225)
                      |..+..++..+..|+..+.... ....|+++++||.|+.+..  ...++.     .+++..++.++++||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999999888887766544 3578999999999987632  223222     2333456779999999999999999


Q ss_pred             HHHHHHH
Q 027292          172 MTVLTEI  178 (225)
Q Consensus       172 ~~l~~~~  178 (225)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=3.9e-24  Score=157.64  Aligned_cols=157  Identities=20%  Similarity=0.348  Sum_probs=115.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..+||+|+|.+|||||||+++|.+.++....... +....  ..  ......+.+||+++.+.+...+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSNVE--EI--VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CSSCE--EE--EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-ceeEE--EE--eecceEEEEeccccccccccchhhhhccceeee
Confidence            45689999999999999999999998765333222 22111  11  123468899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292           95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE  168 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +++|.++..++.....++....... ..+.|+++|+||+|+....  ...+.....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998888766655544333 3689999999999987532  333333332     2234679999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          169 NAFMTVLTEI  178 (225)
Q Consensus       169 ~~f~~l~~~~  178 (225)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=4.7e-24  Score=155.57  Aligned_cols=158  Identities=22%  Similarity=0.344  Sum_probs=119.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML   95 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (225)
                      ..+||+++|.+|||||||+++|.++.+.... ++.+.  .....  ....+.+.+||++|.+.+.......+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF--NVETV--TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE--EEEEE--EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce--eeeee--ccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3489999999999999999999998875433 33222  22222  2345678899999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHHHcCCeEEEeccCCCCCHHHH
Q 027292           96 VYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLEEQRAVPTEDAKE----FAQKEGLFFLETSALEATNVENA  170 (225)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~~  170 (225)
                      ++|..+..++.....++.... .......|+++++||.|+.+... ..+....    ++...+++|+++||++|.|++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999998888777766554443 33345789999999999976322 2222222    23445678999999999999999


Q ss_pred             HHHHHHHHH
Q 027292          171 FMTVLTEIF  179 (225)
Q Consensus       171 f~~l~~~~~  179 (225)
                      |++|++.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.4e-24  Score=157.87  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAY   86 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   86 (225)
                      +.-.|+|+|.+|||||||+|+|++....... .+..+..........  .+..+.+|||||...        +.......
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee--eeeeeeecccccccccccccchhcccccccc
Confidence            4457999999999999999999987653322 232223333323333  345788999999633        23334456


Q ss_pred             hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCC
Q 027292           87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEAT  165 (225)
Q Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  165 (225)
                      +..+|++|+|+|+++...... ..|...++.. ..+.|+++|+||+|+...   ..+..+.+....+ ..++++||++|.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKY---PEEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSS---HHHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccC---HHHHHHHHHhhcccCceEEEecCCCC
Confidence            789999999999987544322 3344444433 347899999999999652   2233444445454 458999999999


Q ss_pred             CHHHHHHHHHHH
Q 027292          166 NVENAFMTVLTE  177 (225)
Q Consensus       166 ~v~~~f~~l~~~  177 (225)
                      |+++++++|++.
T Consensus       157 gi~~L~~~i~~~  168 (178)
T d1wf3a1         157 QVAELKADLLAL  168 (178)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHh
Confidence            999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.7e-24  Score=158.92  Aligned_cols=156  Identities=20%  Similarity=0.195  Sum_probs=114.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||++||..|||||||+++|....++..+.         .+..++...+.+.+||++|++.+..++..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~---------~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGI---------VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSE---------EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccE---------EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            6899999999999999999998876653332         1222334567889999999999999999999999999999


Q ss_pred             EeCCChhhHH-----------hHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---------------CCCCCHHHHHH-HH
Q 027292           97 YDISRRQSFD-----------HIPRWLEELRSHADKNIVIILIGNKSDLEE---------------QRAVPTEDAKE-FA  149 (225)
Q Consensus        97 ~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---------------~~~~~~~~~~~-~~  149 (225)
                      +|+++..++.           ....|...+......+.|+++++||.|+..               .......+... ..
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9998876552           334455555555556899999999998621               01112222221 11


Q ss_pred             HH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          150 QK----------EGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       150 ~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ..          ..+.+++|||+++.+|+++|+.+.+.+++.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            11          134578999999999999999998888764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.8e-23  Score=148.90  Aligned_cols=151  Identities=19%  Similarity=0.269  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   98 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   98 (225)
                      ||+++|++|||||||+++|.++.+.. ..++.+....    ........+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999987753 3444333332    233445678899999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------------HcCCeEEEeccCCCC
Q 027292           99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ------------KEGLFFLETSALEAT  165 (225)
Q Consensus        99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  165 (225)
                      .++...+.....|+....... ..+.|++++++|.|+..  .....++.....            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999988888877776665544 36799999999999975  334444333221            123458999999999


Q ss_pred             CHHHHHHHHHH
Q 027292          166 NVENAFMTVLT  176 (225)
Q Consensus       166 ~v~~~f~~l~~  176 (225)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.7e-24  Score=162.48  Aligned_cols=160  Identities=21%  Similarity=0.216  Sum_probs=124.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+|+|..|||||||+++|..+.+  .+.||.|.+...    +....+.+.+||++|++.+...+..++..+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            58999999999999999999988876  466787765433    334567889999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC----------------CCCCCHHHHHHHH
Q 027292           97 YDISRRQ-----------SFDHIPRWLEELRSHADKNIVIILIGNKSDLEE----------------QRAVPTEDAKEFA  149 (225)
Q Consensus        97 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------------~~~~~~~~~~~~~  149 (225)
                      +|.++..           ..+....|...+......+.|+++++||.|+..                ...........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753           345567788877777667899999999999732                1122233333322


Q ss_pred             H----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          150 Q----------KEGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       150 ~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                      .          ...+.++++||++|.+|.++|+.+.+.+++..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            1          12344789999999999999999998887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.4e-24  Score=156.51  Aligned_cols=150  Identities=20%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------RAVTSAYYR   88 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   88 (225)
                      +||+++|.+|||||||+|+|++...... ..+..........+..  .+..+.+||+||....        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI--DGMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE--TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeec--cCceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998765432 3333233333333333  3457889999994322        122345578


Q ss_pred             CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      .+|++++++|..+..+.+....|...+.... .+.|+++|+||+|+.......       .+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            9999999999998877777666666555544 479999999999986533211       11235679999999999999


Q ss_pred             HHHHHHHHH
Q 027292          169 NAFMTVLTE  177 (225)
Q Consensus       169 ~~f~~l~~~  177 (225)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=6.3e-23  Score=151.78  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~   90 (225)
                      .+|+|+|.+|||||||+|+|++...........+...... .........+.+|||||...       ........+..+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            3699999999999999999998765444444333333332 23334455688999999432       112233457789


Q ss_pred             CEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292           91 VGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE  168 (225)
Q Consensus        91 d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  168 (225)
                      +++++++|....  ........|+...... ..+.|+++|+||+|+.+..  ..+...+.....+.+++++||++|.|++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            999999998653  2333334444332221 1268999999999997532  2233445556678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027292          169 NAFMTVLTEIF  179 (225)
Q Consensus       169 ~~f~~l~~~~~  179 (225)
                      ++++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998877653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.2e-22  Score=147.61  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=98.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch---------hhhhhhHhhhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE---------RYRAVTSAYYRG   89 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~   89 (225)
                      .|+|+|.+|||||||+++|++.......... +.+.......+......+.+||++|..         .+......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-GVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccC-ceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6999999999999999999986553222111 122222222233445678899999932         123344556789


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292           90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      +|+++++++..+..... ...|+..+...   +.|+++|+||+|+.+.  ...+...++.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeeccccccccc-ccccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            99999999987654432 23444445443   6899999999998641  111112223222334589999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027292          170 AFMTVLTEIFNI  181 (225)
Q Consensus       170 ~f~~l~~~~~~~  181 (225)
                      ++++|++.+.+.
T Consensus       155 L~~~i~~~l~e~  166 (171)
T d1mkya1         155 MLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCC
Confidence            999999876554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.5e-22  Score=151.85  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   96 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (225)
                      .+||+++|++|||||||+++|.   +...+.||.|....  .+.  .....+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~--~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFE--IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEE--ETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEe--eeeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   45567778775433  233  3557789999999999999999999999999999


Q ss_pred             EeCCChhhH----------HhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCC----------------CCCCHHHHHHHH
Q 027292           97 YDISRRQSF----------DHIPRWLEELRS-HADKNIVIILIGNKSDLEEQ----------------RAVPTEDAKEFA  149 (225)
Q Consensus        97 ~d~~~~~s~----------~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~----------------~~~~~~~~~~~~  149 (225)
                      +|..+...+          +....|+..+.+ ....+.|++|++||.|+.+.                .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            999874432          233333333332 23458999999999997320                112233344332


Q ss_pred             HH-----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292          150 QK-----------EGLFFLETSALEATNVENAFMTVLTEIFNI  181 (225)
Q Consensus       150 ~~-----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~  181 (225)
                      ..           ..+.++++||+++.+|..+|+.+.+.+++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            22           124567899999999999999998887765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.87  E-value=1.6e-21  Score=144.06  Aligned_cols=157  Identities=21%  Similarity=0.269  Sum_probs=110.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      ....||+++|.+|||||||+++|.++.+.... ++.+....  .+..++  ..+.+||+.+...+...+..+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            44689999999999999999999998775433 33333332  233333  45779999999999888999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027292           95 LVYDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----------------EGLFF  156 (225)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  156 (225)
                      +++|..+...+.....++..... ....+.|+++++||.|+..  ......+......                 .++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999998887776554444333 3346899999999999875  3344444443321                 12458


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +++||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.87  E-value=4.4e-22  Score=147.13  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=103.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-----eeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-----GVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA   90 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (225)
                      ..++|.++|++++|||||+|+|++.........+.     +.............+..+.++|++|+..|.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            45799999999999999999998643222111111     1111111111222346688999999999998888899999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHH----cCCeEEEeccCCC
Q 027292           91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQK----EGLFFLETSALEA  164 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa~~~  164 (225)
                      |++++|+|+.+....+....| ..+..   .+.|+++|+||+|+.+.....  .+..+.+...    .+.+++++||++|
T Consensus        84 d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g  159 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG  159 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC
T ss_pred             cccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCC
Confidence            999999999975433222222 22222   378999999999987532111  1112222222    1357999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEIF  179 (225)
Q Consensus       165 ~~v~~~f~~l~~~~~  179 (225)
                      .|++++++.|.+.+-
T Consensus       160 ~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         160 FGVDELKNLIITTLN  174 (179)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCC
Confidence            999999999887653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=5.4e-22  Score=143.78  Aligned_cols=149  Identities=22%  Similarity=0.252  Sum_probs=98.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------h-hhhhHhhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------Y-RAVTSAYY   87 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~-~~~~~~~~   87 (225)
                      +||+|+|.+|||||||+|+|++....... .+..+.......+..  .+..+.+|||||...        + .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--RGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe--CCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999986543322 222222222222333  345788999999321        1 11223346


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV  167 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  167 (225)
                      ..+|++++|+|++++...+...-+     ... ...++++++||.|+.+..  ..++.... ...+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-----~~~-~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-----ERI-KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-----HHH-TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-----hhc-ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            789999999999986654432222     111 267899999999997632  33333222 223467999999999999


Q ss_pred             HHHHHHHHHH
Q 027292          168 ENAFMTVLTE  177 (225)
Q Consensus       168 ~~~f~~l~~~  177 (225)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.6e-21  Score=142.23  Aligned_cols=159  Identities=18%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------------hh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------------RA   81 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~   81 (225)
                      ...+||+|+|++|||||||+|+|++..... ...+..+.......+..++  ..+.++|+||....            ..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            347999999999999999999999865432 2222222222222333333  45778999995432            22


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----c-CCeE
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----E-GLFF  156 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~-~~~~  156 (225)
                      .....++.+|++++|+|+...... ....|+..+...   +.|+|+|+||+|+.........+..+...+    . ..++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            344556789999999999864332 223344444333   789999999999865444344444333332    1 2569


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHH
Q 027292          157 LETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       157 ~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      +++||++|.|++++++.|.+.+.
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999855443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=3.9e-21  Score=142.25  Aligned_cols=150  Identities=21%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-----------h----hhhhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-----------R----YRAVT   83 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~----~~~~~   83 (225)
                      .|+|+|.+|||||||+|+|++........+.++.+  ...+...    .+.+|||||..           .    +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            68999999999999999999877655544433322  2222222    35789999941           1    12223


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhH----------HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHI----------PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG  153 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  153 (225)
                      ...++.+|++++|+|..+.......          ..+++.+..   .+.|+++|+||+|+....   ......+....+
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhH---HHHHHHHHHHhc
Confidence            3456789999999998753221111          112222322   378999999999986422   122222333322


Q ss_pred             -------CeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292          154 -------LFFLETSALEATNVENAFMTVLTEIFN  180 (225)
Q Consensus       154 -------~~~~~~Sa~~~~~v~~~f~~l~~~~~~  180 (225)
                             ..++++||++|.|+++++++|.+.+-+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238999999999999999999877654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=3.7e-21  Score=147.32  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=104.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE----------------ECCEEEEEEEEeCCCchhhhhhh
Q 027292           20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV----------------IQHKSVKAQIWDTAGQERYRAVT   83 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~~   83 (225)
                      |+|+|++++|||||+++|++...........+.........                +......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987432221111111111111111                22344578899999999998888


Q ss_pred             HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH-------------H-------
Q 027292           84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT-------------E-------  143 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-------------~-------  143 (225)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .+.|+|+++||+|+.+......             .       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999987433222 222233333   3789999999999965332110             0       


Q ss_pred             HH----HHHHHH--------------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292          144 DA----KEFAQK--------------EGLFFLETSALEATNVENAFMTVLTEIFNIVNK  184 (225)
Q Consensus       144 ~~----~~~~~~--------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~  184 (225)
                      ..    ..+...              ..++++++||.+|.|++++++.|...+.+.+.+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            00    011111              013589999999999999999988877665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.6e-20  Score=138.24  Aligned_cols=117  Identities=15%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCCEEEEEE
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-AVTSAYYRGAVGAMLVY   97 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~   97 (225)
                      +|+|+|++|||||||+++|.++.+...+ ++.+.+.....+ .....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876543 444444433222 24567789999999999885 56778889999999999


Q ss_pred             eCCChhh-HHhHHHHHHHH-Hhh--cCCCCcEEEEEeCCCCCCC
Q 027292           98 DISRRQS-FDHIPRWLEEL-RSH--ADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        98 d~~~~~s-~~~~~~~~~~~-~~~--~~~~~piilv~nK~Dl~~~  137 (225)
                      |+++..+ .....+|+..+ ...  ...+.|++|++||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998655 34444444433 222  2346899999999999753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=7.9e-20  Score=136.65  Aligned_cols=162  Identities=18%  Similarity=0.151  Sum_probs=105.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-----CCcceeeeEEEEEE-------------------ECCEEEEEE
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-----KATIGVEFQTRTLV-------------------IQHKSVKAQ   69 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~~~-------------------~~~~~~~~~   69 (225)
                      +...++|+++|+.++|||||+++|.+.......     ..+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            567889999999999999999999863221111     11111111111111                   111245689


Q ss_pred             EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHH
Q 027292           70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKE  147 (225)
Q Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~  147 (225)
                      ++||||+..|.......+..+|++++|+|+.+........+.+..+... . ..++++++||+|+.+.....  .+...+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~-~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-G-QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-c-CccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999999998888899999999999998753222223333333333 1 34588889999987632111  122333


Q ss_pred             HHHHc---CCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          148 FAQKE---GLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       148 ~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      +....   .++++++||++|.|++++++.+.+.
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33332   3579999999999999988887653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1e-19  Score=135.94  Aligned_cols=159  Identities=16%  Similarity=0.119  Sum_probs=95.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hh--
Q 027292           12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RY--   79 (225)
Q Consensus        12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~--   79 (225)
                      -+.+..++|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|..          .+  
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhh
Confidence            3455567999999999999999999998653222222222222222222222   23455665521          11  


Q ss_pred             -hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCC
Q 027292           80 -RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----EGL  154 (225)
Q Consensus        80 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~  154 (225)
                       ..........+|++++++|+.+.... ....+++.+...   +.|+++|+||+|+..... ..+..+.+.+.    ...
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~-~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGK-WDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGG-HHHHHHHHHHHHTCCTTS
T ss_pred             HHhhhhccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHH-HHHHHHHHHHHhcccCCC
Confidence             11223345678999999999865332 223445555443   789999999999864322 22223333333    335


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHH
Q 027292          155 FFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       155 ~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      +++++||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            699999999999999999988765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1e-20  Score=140.24  Aligned_cols=156  Identities=16%  Similarity=0.121  Sum_probs=99.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh----hh---hHhhhcCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR----AV---TSAYYRGA   90 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~---~~~~~~~~   90 (225)
                      .+|+|+|.+|||||||+|+|++........+..+.........+ .....+.+|||||.....    .+   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe-cCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            47999999999999999999887654444444333333333332 233467899999953211    11   12234568


Q ss_pred             CEEEEEEeCCChhhHHhHHH--HHHHHH---hhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEeccCC
Q 027292           91 VGAMLVYDISRRQSFDHIPR--WLEELR---SHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE--GLFFLETSALE  163 (225)
Q Consensus        91 d~~i~v~d~~~~~s~~~~~~--~~~~~~---~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  163 (225)
                      ++++++++............  +.....   .....++|+++|+||+|+.+.    .+....+...+  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCC
Confidence            88888887765433222211  111111   122246899999999998752    23334444444  57799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027292          164 ATNVENAFMTVLTEI  178 (225)
Q Consensus       164 ~~~v~~~f~~l~~~~  178 (225)
                      |.|++++++.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999887765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=3.4e-20  Score=141.32  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=112.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM   94 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (225)
                      +..+||+++|..|||||||+++|..+.+    .||.|...  ..+.+  ..+.+.+||++|++.++..|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEE--CcEEEEEEecCccceeccchhhhcccccceE
Confidence            4578999999999999999999987654    35655433  33333  3578899999999999999999999999999


Q ss_pred             EEEeCCChhh----------HHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-------------------------
Q 027292           95 LVYDISRRQS----------FDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQR-------------------------  138 (225)
Q Consensus        95 ~v~d~~~~~s----------~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------------------  138 (225)
                      +|+|.++...          +.. ...|...+.+....++|++|++||+|+.+..                         
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            9999986322          222 2233333333333579999999999983210                         


Q ss_pred             ---CC--CHHHHHHH-----HHH--------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292          139 ---AV--PTEDAKEF-----AQK--------EGLFFLETSALEATNVENAFMTVLTEIFNIV  182 (225)
Q Consensus       139 ---~~--~~~~~~~~-----~~~--------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~  182 (225)
                         ..  ....+..+     .+.        ..+..+++||+++.+++.+|+.+.+.+++..
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence               00  11222222     111        1234678999999999999999887777653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=7.6e-19  Score=132.26  Aligned_cols=161  Identities=15%  Similarity=0.128  Sum_probs=100.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC---CcceeeeEE--EEEE------------------------ECCEE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK---ATIGVEFQT--RTLV------------------------IQHKS   65 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~---~~~~~~~~~--~~~~------------------------~~~~~   65 (225)
                      .+.++|+++|+.++|||||+++|++........   .....+...  ..+.                        .....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            445799999999999999999998632211100   000000000  0000                        01123


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TE  143 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~  143 (225)
                      ..+.++|+||+..|.......+..+|++|+|+|+.+.-...+..+-+..+... . ..|+||++||+|+.+.....  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~-i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T-CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C-CceeeeccccCCCccchHHHHHHH
Confidence            56899999999999988888899999999999998743222222222223222 1 35789999999997532111  11


Q ss_pred             HHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          144 DAKEFAQKE---GLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       144 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ....+....   +++++++||++|.|++++++.+...
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            122222222   3679999999999999998877654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=7.7e-20  Score=136.44  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=105.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC-----cC---------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN-----EF---------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA   81 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   81 (225)
                      +.+||+++|+.++|||||+++|++.     ..         ........+++.......+......+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4589999999999999999999751     00         011122234445555555666777899999999999999


Q ss_pred             hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-----
Q 027292           82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV---PTEDAKEFAQKEG-----  153 (225)
Q Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----  153 (225)
                      .....+..+|++|+|+|+.+...-+. .+.+..+....  ..|+|+++||+|+..+...   ...+++.+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            88889999999999999997533222 22233333321  3578999999998653211   1113344444443     


Q ss_pred             CeEEEeccCCC----------CCHHHHHHHHH
Q 027292          154 LFFLETSALEA----------TNVENAFMTVL  175 (225)
Q Consensus       154 ~~~~~~Sa~~~----------~~v~~~f~~l~  175 (225)
                      ++++++|+++|          .++..+++.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~  190 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVD  190 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHH
Confidence            56999999987          36666665543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.74  E-value=2e-17  Score=125.50  Aligned_cols=152  Identities=20%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-------------------------------CCCcceeeeEEEEEEE
Q 027292           13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLD-------------------------------SKATIGVEFQTRTLVI   61 (225)
Q Consensus        13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   61 (225)
                      .+...+||+++|+.++|||||+.+|+...-...                               .....+.+.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            455789999999999999999999964211000                               0011122222222333


Q ss_pred             CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCC
Q 027292           62 QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI-VIILIGNKSDLEEQRAV  140 (225)
Q Consensus        62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~  140 (225)
                      ......+.++|+||+..|-......+..+|++|+|+|+.....-+.... +..+...   ++ .+|+++||+|+.+..+.
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~~---gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASLL---GIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHHc---CCCEEEEEEEccccccccce
Confidence            3445678999999999999999999999999999999987433332222 2222222   44 48889999999764322


Q ss_pred             CHH----HHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027292          141 PTE----DAKEFAQKEG-----LFFLETSALEATNVE  168 (225)
Q Consensus       141 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~  168 (225)
                      ..+    ++..+....+     ++|+++||.+|.|+.
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            222    2334454544     358999999999883

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.5e-17  Score=122.14  Aligned_cols=158  Identities=20%  Similarity=0.197  Sum_probs=97.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHh
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---------AVTSA   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   85 (225)
                      .+.-.|+|+|.+|||||||+|+|++...........+........... ....+..||++|.....         .....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhcccc
Confidence            345569999999999999999999876554433332232222222221 22345568888743221         11222


Q ss_pred             hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCC
Q 027292           86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEA  164 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  164 (225)
                      ....+|+++++.|..+...  ....+...+.+   ...|.++|+||.|..............+..+++ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            3346788888888775332  22222333332   367889999999986543222333444555555 56999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027292          165 TNVENAFMTVLTEI  178 (225)
Q Consensus       165 ~~v~~~f~~l~~~~  178 (225)
                      .|++++++.|.+.+
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999886643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=8.2e-18  Score=126.27  Aligned_cols=143  Identities=16%  Similarity=0.148  Sum_probs=93.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC------cCCCCCC---------CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN------EFSLDSK---------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR   80 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   80 (225)
                      +.+||+++|+.++|||||+++|+..      .......         ...+++.......+...+..+.|+||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            4589999999999999999999641      0000000         001233333444455666788999999999999


Q ss_pred             hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 027292           81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKEG---  153 (225)
Q Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  153 (225)
                      ......+..+|++|+|+|+.+....+....| ..+...   ++| +++++||+|+.+.....   .++++.+....+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999875544433333 333333   665 77889999986522111   122333344333   


Q ss_pred             --CeEEEeccC
Q 027292          154 --LFFLETSAL  162 (225)
Q Consensus       154 --~~~~~~Sa~  162 (225)
                        +++++.|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              457888765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.5e-17  Score=124.94  Aligned_cols=116  Identities=18%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh----hcCCC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAY----YRGAV   91 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d   91 (225)
                      +.++|+|+|++|||||||+|+|.+.++..    +++.....  ..+...+..+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            34689999999999999999999876532    22222222  2234455678899999998765554443    44568


Q ss_pred             EEEEEEeCCC-hhhHHhHHHHH----HHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292           92 GAMLVYDISR-RQSFDHIPRWL----EELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus        92 ~~i~v~d~~~-~~s~~~~~~~~----~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      .+++++|..+ ..+++....|+    ..+......+.|+++|+||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8899998775 45555555554    3444555578999999999999763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.3e-17  Score=118.84  Aligned_cols=164  Identities=15%  Similarity=0.076  Sum_probs=85.9

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-------hhhhh
Q 027292           10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-------RYRAV   82 (225)
Q Consensus        10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~   82 (225)
                      .+.+.+..++|+|+|.+|||||||+|+|.+...........+................+..++.++..       .....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            34567889999999999999999999998876544433332233333233222222222222222211       11111


Q ss_pred             h---HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHc--CCe
Q 027292           83 T---SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQKE--GLF  155 (225)
Q Consensus        83 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~  155 (225)
                      .   .......+.++.+.+........ ...++..+...   ..++++++||+|+.+.....  .+..++....+  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            1   12223445555666665433222 23333444333   67899999999987521111  11122222222  246


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 027292          156 FLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       156 ~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ++++||++|.|++++++.|.+.
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999987653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=3.1e-16  Score=121.93  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=82.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS----------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      +.-||.++|+.++|||||+.+++...-....                ....+++.......+.+.+..+.|+||||+..|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            3458999999999999999999752111000                011122223333344456678999999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      .......+..+|++|+|+|+.+.-.......| +....   .+.|.++++||+|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            99999999999999999999986555554444 33333   389999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=8.7e-17  Score=123.24  Aligned_cols=151  Identities=15%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCC--------------------CC---------CCCcceeeeEEEEEEECCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFS--------------------LD---------SKATIGVEFQTRTLVIQHKSV   66 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~   66 (225)
                      ..++|+++|+.++|||||+.+|+...-.                    ..         .....+++.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            4589999999999999999999641100                    00         001123333333444445668


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh---H---HhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS---F---DHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRA  139 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~  139 (225)
                      .+.|+|||||..|.......+..+|++|+|+|+....-   +   .+..+-+......   ++| +|+++||+|+.+...
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d~  161 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDE  161 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCH
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCCH
Confidence            89999999999999999999999999999999986311   0   1122212222222   554 888999999876332


Q ss_pred             CCH----HHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292          140 VPT----EDAKEFAQKEG-----LFFLETSALEATNVEN  169 (225)
Q Consensus       140 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  169 (225)
                      ...    .++..+....+     ++++++|+..|.|+-+
T Consensus       162 ~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         162 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            222    22344444444     4589999999987643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=8.5e-17  Score=122.45  Aligned_cols=149  Identities=18%  Similarity=0.206  Sum_probs=93.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcC-------------------------------CCCCCCcceeeeEEEEEEECCE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEF-------------------------------SLDSKATIGVEFQTRTLVIQHK   64 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   64 (225)
                      +.+||+|+|+.++|||||+.+|+...-                               ..+...  +.+.......++..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcC--CccccceEEEEecC
Confidence            368999999999999999998863110                               011111  23333333334456


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh---H---HhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS---F---DHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      ...+.++||||+..|.......+..+|++|+|+|+.+...   +   .+..+-+.... ... ..++|+++||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~-~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG-LDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT-CTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhC-CCceEEEEEcccCCCcc
Confidence            6789999999999999999999999999999999997421   1   11111111121 122 34688889999987522


Q ss_pred             CCC--HH----HHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027292          139 AVP--TE----DAKEFAQKEG-----LFFLETSALEATNVE  168 (225)
Q Consensus       139 ~~~--~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~  168 (225)
                      ...  .+    .+..+...++     ++++++||..|.|+.
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            211  11    2333334433     458999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=2e-16  Score=121.72  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=83.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------CCCCcceeeeEEEEEEECCEEE
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSL-----------------------------DSKATIGVEFQTRTLVIQHKSV   66 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   66 (225)
                      ..++|+++|+.++|||||+.+|+...-..                             ......+.........+.....
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            46799999999999999999995411000                             0001111222222222334446


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCC
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFD---HIPRWLEELRSHADKNI-VIILIGNKSDLEEQRA  139 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~  139 (225)
                      .+.++||||+..|..........+|++|+|+|+.+..   ++.   +..+-+..+...   ++ ++++++||+|+.....
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCSS
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccch
Confidence            7899999999999999999999999999999998732   111   222222222222   44 4889999999974322


Q ss_pred             C--CHHH----HHHHHHHc-------CCeEEEeccCCCCCHHHHH
Q 027292          140 V--PTED----AKEFAQKE-------GLFFLETSALEATNVENAF  171 (225)
Q Consensus       140 ~--~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~v~~~f  171 (225)
                      .  ..++    +..+....       .++|+++||++|+|+.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            1  1111    22222222       2569999999999997654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=1.5e-15  Score=117.80  Aligned_cols=112  Identities=12%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLD------------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      =+|+|+|+.++|||||+.+|+...-...                  .....++....  ..+.+.+..+.++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~--~~~~~~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGV--APLLFRGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEE--EEEEETTEEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeec--ccccccccceeEEccCchhhh
Confidence            3699999999999999999964211000                  01112222222  333345567899999999999


Q ss_pred             hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      .......++.+|++|+|+|+.+.-.......|. .+.+.   +.|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---cccccccccccccc
Confidence            999999999999999999999765555444443 33333   78999999999963

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.1e-14  Score=114.77  Aligned_cols=117  Identities=18%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCc----------------CCCCCCCcceeeeEEEEEEE--------------CCE
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNE----------------FSLDSKATIGVEFQTRTLVI--------------QHK   64 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~~   64 (225)
                      ++.-+|+|+|+.++|||||+.+|+...                ...+..+..++......+..              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            344469999999999999999996311                01111122222222222221              345


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292           65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE  135 (225)
Q Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (225)
                      .+.+.++||||+..|.......++.+|++|+|+|+.+.-.......|.....    .+.|+++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            6789999999999999999999999999999999998665555444444332    378999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1e-13  Score=113.70  Aligned_cols=156  Identities=12%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcce---eeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhh
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIG---VEFQTRTLVIQHKSVKAQIWDTAGQERYRA-----VTSAYY   87 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~   87 (225)
                      ..++|+|+|.+|+|||||+|+|.+...........+   ++.....+.. .....+.+|||||......     +.....
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999998543322211111   1111122222 2233477999999654221     122335


Q ss_pred             cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCCCCCHHH----H----HHHHHHc
Q 027292           88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE-------EQRAVPTED----A----KEFAQKE  152 (225)
Q Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~----~----~~~~~~~  152 (225)
                      ..+|++|++.|..-.+.-   ..++..+...   +.|+++|.||+|..       .......+.    +    .......
T Consensus       134 ~~~d~~l~~~~~~~~~~d---~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKND---IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHHH---HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHHH---HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            678988888875422221   2233444433   78999999999962       111122222    1    1222233


Q ss_pred             CC---eEEEeccCCC--CCHHHHHHHHHHHH
Q 027292          153 GL---FFLETSALEA--TNVENAFMTVLTEI  178 (225)
Q Consensus       153 ~~---~~~~~Sa~~~--~~v~~~f~~l~~~~  178 (225)
                      ++   ++|.+|..+.  .++..+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            33   4788887654  47888888776665

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.49  E-value=1.2e-13  Score=106.80  Aligned_cols=125  Identities=12%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHh-
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RAVTSA-   85 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~-   85 (225)
                      ...++|+|+|.+|+|||||+|.|++........ +..+...........  +..+.+|||||....       ...... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~--g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEec--cEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999876544332 222223333333333  457889999994221       111111 


Q ss_pred             -hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCCCCC
Q 027292           86 -YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK--NIVIILIGNKSDLEEQRAVP  141 (225)
Q Consensus        86 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~  141 (225)
                       .....|+++||++++...--......+..+...+..  -.++++|+||+|........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             224568899998887532111112223333333322  25789999999987543333

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.33  E-value=9e-13  Score=100.55  Aligned_cols=112  Identities=14%  Similarity=-0.062  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCchhhhhhhHh---h--hcCCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAVTSA---Y--YRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      ..+.++|+||+..+......   +  ....+++++++|+........ ...++...........|.++|+||+|+.....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence            34889999998775433222   1  224578999999865222121 11222211111122789999999999875211


Q ss_pred             CCH-----------------------HHHH---HHHHH--cCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292          140 VPT-----------------------EDAK---EFAQK--EGLFFLETSALEATNVENAFMTVLTE  177 (225)
Q Consensus       140 ~~~-----------------------~~~~---~~~~~--~~~~~~~~Sa~~~~~v~~~f~~l~~~  177 (225)
                      ...                       ....   .....  ..++++++||++|+|+++++..|.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            000                       0000   01111  24679999999999999999877654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.21  E-value=3.4e-11  Score=95.49  Aligned_cols=103  Identities=12%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA  145 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (225)
                      +.+.|++|.|...-.   ......+|.+++|......+..+.+   ...+.+..     -++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~---k~gilE~a-----Di~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI---KKGIFELA-----DMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C---CTTHHHHC-----SEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhh---hhhHhhhh-----heeeEeccccccchHHHHHHH
Confidence            567888998854322   2234569999999998876554432   22233332     377889999865322111111


Q ss_pred             HHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292          146 KEFAQ----------KEGLFFLETSALEATNVENAFMTVLTEIF  179 (225)
Q Consensus       146 ~~~~~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~  179 (225)
                      ..+..          .+..+++.+||.++.|+++++++|.+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            11111          14567999999999999999998866543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=4.8e-11  Score=94.77  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHH
Q 027292           67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TED  144 (225)
Q Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~  144 (225)
                      .+.+++|.|...-.   ..+...+|.+++|.+....+..+.+..   .+.+..     -++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~a-----Di~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLMEVA-----DLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHHHHC-----SEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhch---hhhccc-----cEEEEEeecccchHHHHHHHHH
Confidence            46677777643221   235567899999998776655544322   233332     26778999986521111  111


Q ss_pred             HHHHH-------HHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292          145 AKEFA-------QKEGLFFLETSALEATNVENAFMTVLTEI  178 (225)
Q Consensus       145 ~~~~~-------~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~  178 (225)
                      .+...       ..+..+++.+||.+|.|++++++.|.+..
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            11111       12345799999999999999999886644

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=4.7e-10  Score=88.07  Aligned_cols=120  Identities=14%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEE----------CC----------------------
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVI----------QH----------------------   63 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~----------~~----------------------   63 (225)
                      .++|+|+|..++|||||+|+|++..+.+. ..+++...........          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            56899999999999999999999886433 3333221111111110          00                      


Q ss_pred             -----------------EEEEEEEEeCCCchh-------------hhhhhHhhhcCCCE-EEEEEeCCChhhHHhHHHHH
Q 027292           64 -----------------KSVKAQIWDTAGQER-------------YRAVTSAYYRGAVG-AMLVYDISRRQSFDHIPRWL  112 (225)
Q Consensus        64 -----------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~  112 (225)
                                       ....+.++|+||...             ...+...|+...+. +++|.++...-+......|.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             001378999999421             23445566666664 55566666544444444554


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292          113 EELRSHADKNIVIILIGNKSDLEEQRA  139 (225)
Q Consensus       113 ~~~~~~~~~~~piilv~nK~Dl~~~~~  139 (225)
                      +.+   .....++++|+||+|..+...
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTTC
T ss_pred             HHh---CcCCCceeeEEeccccccchh
Confidence            443   333567999999999976433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=5e-10  Score=87.11  Aligned_cols=84  Identities=18%  Similarity=0.125  Sum_probs=54.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE-------------E--EEEEEEeCCCchh---
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK-------------S--VKAQIWDTAGQER---   78 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~l~Dt~G~~~---   78 (225)
                      .++|.++|.|+||||||++++..........|.++++.....+.+...             .  ..+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999999999987765555555444444444443221             1  2488999999321   


Q ss_pred             ----hhhhhHhhhcCCCEEEEEEeCC
Q 027292           79 ----YRAVTSAYYRGAVGAMLVYDIS  100 (225)
Q Consensus        79 ----~~~~~~~~~~~~d~~i~v~d~~  100 (225)
                          ........++.+|++|.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1122345678999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.03  E-value=1.2e-09  Score=85.96  Aligned_cols=118  Identities=16%  Similarity=0.207  Sum_probs=69.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEE-----------------------------------
Q 027292           17 VFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLV-----------------------------------   60 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------------------------------   60 (225)
                      .++|+|+|..++|||||+|+|++..+.+... +++..........                                   
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999977643332 2211111111000                                   


Q ss_pred             ---------------------E-CCEEEEEEEEeCCCchh-------------hhhhhHhhhcCCCEEEEEE-eCCChhh
Q 027292           61 ---------------------I-QHKSVKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVY-DISRRQS  104 (225)
Q Consensus        61 ---------------------~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s  104 (225)
                                           + ......+.++||||...             ...+...|+..++.+|+++ +......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                                 0 00012377999999432             2355667888899866665 4443333


Q ss_pred             HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292          105 FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ  137 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (225)
                      ......+.+.+   .....++++|+||+|..+.
T Consensus       184 ~~~~~~~~~~~---~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         184 NSDALQLAKEV---DPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TCSHHHHHHHH---CSSCSSEEEEEECTTSSCS
T ss_pred             ccHHHHHHHHh---CcCCCeEEEEEeccccccc
Confidence            33334444443   3335679999999998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=8.9e-10  Score=87.26  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE----------------------ECCEEEEEEEEeCCC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV----------------------IQHKSVKAQIWDTAG   75 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~Dt~G   75 (225)
                      ++|.++|.|+||||||+|+|.+........|.++.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998766555555434332221110                      012346799999999


Q ss_pred             chhh-------hhhhHhhhcCCCEEEEEEeCCC
Q 027292           76 QERY-------RAVTSAYYRGAVGAMLVYDISR  101 (225)
Q Consensus        76 ~~~~-------~~~~~~~~~~~d~~i~v~d~~~  101 (225)
                      .-.-       .......++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4221       1112234568999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.85  E-value=6.3e-09  Score=81.45  Aligned_cols=86  Identities=13%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECC---------------EEEEEEEEeCCCchh-
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQH---------------KSVKAQIWDTAGQER-   78 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~~-   78 (225)
                      ..++|.++|.|+||||||++++++... .....|.++++.....+.+..               ....+.+.|+||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            458999999999999999999997654 334444444444444444332               124688999998321 


Q ss_pred             ------hhhhhHhhhcCCCEEEEEEeCCC
Q 027292           79 ------YRAVTSAYYRGAVGAMLVYDISR  101 (225)
Q Consensus        79 ------~~~~~~~~~~~~d~~i~v~d~~~  101 (225)
                            ........++.+|++|.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  12234456789999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.48  E-value=7.7e-08  Score=74.21  Aligned_cols=59  Identities=20%  Similarity=0.383  Sum_probs=37.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ   76 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   76 (225)
                      ....++|+|+|.|+||||||+|+|.+........ ..|++....++..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEEECCC---CeEEecCCCc
Confidence            3457999999999999999999999876533332 223444444443322   4889999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=3.9e-07  Score=67.70  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEeccC
Q 027292           86 YYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK--EGLFFLETSAL  162 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~  162 (225)
                      ...+.|.+++|+++.+++ +...+.+|+......   +++.+||+||+|+.+..  ..+....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEeccc
Confidence            456889999999998754 556677777776555   78999999999997521  12223333332  34678999999


Q ss_pred             CCCCHHHHHHHHH
Q 027292          163 EATNVENAFMTVL  175 (225)
Q Consensus       163 ~~~~v~~~f~~l~  175 (225)
                      ++.+++++..++.
T Consensus        82 ~~~g~~~L~~~l~   94 (225)
T d1u0la2          82 TGMGIEELKEYLK   94 (225)
T ss_dssp             TCTTHHHHHHHHS
T ss_pred             cchhHhhHHHHhc
Confidence            9999999887663

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.25  E-value=5.2e-06  Score=58.98  Aligned_cols=23  Identities=22%  Similarity=0.679  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=2.9e-07  Score=68.40  Aligned_cols=58  Identities=21%  Similarity=0.137  Sum_probs=33.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292           19 KVVLIGDSAVGKSQILARFARNEFSLDS------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY   79 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   79 (225)
                      ..+|+|++|||||||+|+|.+.......      ....-++.....+..++.   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            5689999999999999999875322111      111112222223333322   358999996543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.4e-05  Score=59.21  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +.+=++|-|..|||||||+++++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4556889999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.21  E-value=1.6e-07  Score=69.19  Aligned_cols=91  Identities=12%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCchhhhhh----hHhh---h-----cCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           66 VKAQIWDTAGQERYRAV----TSAY---Y-----RGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      ..+.++||+|...+...    ...+   .     ...+-.++|+|+.. .+....+..++..+      +.. -+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCc-eEEEecc
Confidence            46899999995433221    1111   1     24577899999885 34444444444443      222 3567999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       133 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |....    .-.+-.+....+.++..++.  |+++++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            97642    22355667778888766653  444443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=5.8e-07  Score=66.16  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCchhhhhh----hH---hhhc-----CCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           66 VKAQIWDTAGQERYRAV----TS---AYYR-----GAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      +.+.|+||+|....+..    ..   ....     ..+-.++|.|+.. .+....+..++..+      +. --+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------GL-TGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------CC-CEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------CC-ceEEEeec
Confidence            46889999994332211    11   1222     2467899999875 33343333333322      22 23567999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       133 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |...    ..-.+-.+....+.|+..++  .|++|++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9754    22346667778899977775  5555543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=2.7e-07  Score=68.81  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..+|+|++|||||||+|+|.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4579999999999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=3.9e-06  Score=64.39  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=64.7

Q ss_pred             hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292           83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL  162 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (225)
                      ....+..+|++|+|+|+..+.+...  .++   .+... +.|.++|+||+|+.+..  ..+...+.....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l---~~~~~-~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMI---EDILK-NKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHH---HHHCS-SSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHH---HHHHc-CCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecc
Confidence            4557889999999999988765432  112   22222 67999999999998521  1223333444556789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 027292          163 EATNVENAFMTVLTEIFNIVN  183 (225)
Q Consensus       163 ~~~~v~~~f~~l~~~~~~~~~  183 (225)
                      .+.+...+...+.+.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~  101 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFD  101 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhhh
Confidence            999999888877776655443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=4.3e-06  Score=61.54  Aligned_cols=91  Identities=18%  Similarity=0.133  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCchhhhhh----hHhh---hc-----CCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292           66 VKAQIWDTAGQERYRAV----TSAY---YR-----GAVGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGNKS  132 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~  132 (225)
                      +.+.|+||+|...++..    ...+   ..     ..+-.++|+|+... +....+...+..+      +. --+|++|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------NV-TGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------CC-CEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------CC-ceEEEecc
Confidence            45899999994332211    1111   11     24678999998743 2333333322222      22 23667999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          133 DLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       133 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                      |...    ..-.+-.++...+.|+..++  +|.++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9753    22345667778888877775  4555544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.09  E-value=1.4e-06  Score=64.08  Aligned_cols=91  Identities=20%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCchhhhh------hhHhh--hcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292           66 VKAQIWDTAGQERYRA------VTSAY--YRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEE  136 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  136 (225)
                      ..+.++||+|...+..      ....+  .-..+-+++|+++.... ..+.+...   .. ..  +. --+|+||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~---~~-~~--~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF---NQ-AS--KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH---HH-HC--TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhh---hc-cc--Cc-ceEEEecccCCC
Confidence            4689999999533221      11111  22456788999887532 23322222   21 11  22 235679999654


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292          137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVEN  169 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  169 (225)
                          ..-.+-.++...++++..++  +|.+|++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                45667778888999977776  3555543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=5.9e-07  Score=66.89  Aligned_cols=85  Identities=19%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             hhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEecc
Q 027292           86 YYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK---EFAQKEGLFFLETSA  161 (225)
Q Consensus        86 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa  161 (225)
                      ...+.|.+++|+++.++. +...+.+++......   +++.+||+||+||.++.. ..+.+.   +.....+.+++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeec
Confidence            356889999999998754 566677777665544   788999999999976321 112222   334556889999999


Q ss_pred             CCCCCHHHHHHHH
Q 027292          162 LEATNVENAFMTV  174 (225)
Q Consensus       162 ~~~~~v~~~f~~l  174 (225)
                      .++.|++++..++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999988776644

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.90  E-value=3.4e-05  Score=56.43  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292           66 VKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR  138 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (225)
                      ..+.+|||+|...++..    +..+  ....+-+++|.|+.... ..+.+..+    .+...  .- -++++|.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f----~~~~~--~~-~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF----DEKVG--VT-GLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH----HHHTC--CC-EEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHH----HhhCC--CC-eeEEeecCccc--
Confidence            46889999994433221    1112  23568899999987543 33333222    22222  11 26679999653  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEec
Q 027292          139 AVPTEDAKEFAQKEGLFFLETS  160 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~S  160 (225)
                        ..-.+-.+....+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              23456677788888876664

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=2.8e-05  Score=55.06  Aligned_cols=41  Identities=15%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             HHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 027292          145 AKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT  188 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~  188 (225)
                      ..++.++++.+++.+..   .++.+.++.+++.+.+..+.++..
T Consensus       148 ~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~~~  188 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEEIS  188 (192)
T ss_dssp             HHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCcHh
Confidence            44556667778777753   468999999999888877766554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.42  E-value=3.5e-05  Score=53.99  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.36  E-value=5.4e-05  Score=53.14  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +..++|+|.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4568999999999999999999965

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00046  Score=52.50  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=54.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-----CcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hh-h
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSK-----ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RA-V   82 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~-~   82 (225)
                      +..=|.|+|+.++|||+|+|.|++........     .|.|+-.....+ ..+....+.++||.|....       .. +
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~~~~~~~i  109 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGDNQNDSWI  109 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccccccccchhHHHH
Confidence            57788999999999999999999866433322     233322221111 2345567889999994321       11 1


Q ss_pred             hHhhhcCCCEEEEEEe-CCChhhHHhHHHHH
Q 027292           83 TSAYYRGAVGAMLVYD-ISRRQSFDHIPRWL  112 (225)
Q Consensus        83 ~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~  112 (225)
                      ....+--++++|+=.. ..+....+.+....
T Consensus       110 ~~l~~llSs~~i~N~~~~~~~~~l~~L~~~~  140 (277)
T d1f5na2         110 FALAVLLSSTFVYNSIGTINQQAMDQLYYVT  140 (277)
T ss_dssp             HHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhCEEEEeccccCcHHHHHHHHHHH
Confidence            1112224566666443 33455555544433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=6.7e-05  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998855

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.5e-05  Score=52.45  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +-|.|+|.+|||||||+++|+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.20  E-value=9.4e-05  Score=52.62  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.19  E-value=0.0001  Score=52.79  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..+||+|+|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.19  E-value=0.00011  Score=52.76  Aligned_cols=25  Identities=16%  Similarity=0.500  Sum_probs=22.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999976

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.0001  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +||+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.18  E-value=9.2e-05  Score=51.81  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=18.6

Q ss_pred             eE-EEEcCCCCCHHHHHHHHhc
Q 027292           19 KV-VLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I-~vlG~~g~GKSsLi~~l~~   39 (225)
                      || .|+|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 5999999999999999976

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00011  Score=52.17  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999965

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.14  E-value=0.00012  Score=50.21  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|.|.+|||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00012  Score=51.79  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +||+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.09  E-value=0.00012  Score=52.47  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++|+|+|++||||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.02  E-value=0.00017  Score=50.16  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999975

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00017  Score=50.40  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +||+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0002  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.89  E-value=0.00033  Score=50.14  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..|+|+|++||||||+.++|..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999965

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00028  Score=49.83  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...-|+++|.+|||||||++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00026  Score=49.66  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00028  Score=50.95  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.81  E-value=0.00034  Score=48.71  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.0011  Score=45.74  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-|++-|+-|+|||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            45888999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00041  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +.|+|+|++||||||+...|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.0004  Score=49.51  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.69  E-value=0.00054  Score=47.80  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -+-|.|.|.+||||||+.+.|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999988864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00068  Score=48.50  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ...-|+|+|++||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            455699999999999999999965

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00047  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +|+|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999988774

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.66  E-value=0.00048  Score=49.83  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999999774

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00049  Score=47.83  Aligned_cols=21  Identities=38%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|+|.+||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999999875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.00052  Score=48.62  Aligned_cols=21  Identities=48%  Similarity=0.621  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.64  E-value=0.00053  Score=48.20  Aligned_cols=20  Identities=25%  Similarity=0.245  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00056  Score=48.48  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|+|++|+||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999985

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00058  Score=50.43  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988773

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.58  E-value=0.00067  Score=50.11  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....++|.|+||+|||||++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.56  E-value=0.00063  Score=48.01  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=18.0

Q ss_pred             eeEE-EEcCCCCCHHHHHHHHhc
Q 027292           18 FKVV-LIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~-vlG~~g~GKSsLi~~l~~   39 (225)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3555 569999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.56  E-value=0.00062  Score=47.42  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988664

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00065  Score=48.60  Aligned_cols=20  Identities=45%  Similarity=0.667  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|+|++|||||||+++|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.55  E-value=0.00061  Score=50.28  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999977664

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.54  E-value=0.00068  Score=50.47  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++-+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.004  Score=45.91  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..++++.|++|+||||+++.++..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346999999999999999988764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00079  Score=48.27  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-+++++|++|||||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34789999999999999988865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.51  E-value=0.00071  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.00071  Score=50.74  Aligned_cols=22  Identities=41%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|++|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999988763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.49  E-value=0.00073  Score=50.61  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|++.|+||+|||+|++.+...
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00075  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.001  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+|+|.|++|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.48  E-value=0.00078  Score=47.09  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.46  E-value=0.0008  Score=49.88  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.++|+.|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3789999999999999998774

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00079  Score=48.81  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -|+|+|++|||||||++.|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.00076  Score=49.75  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..++|.|+||+|||++++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.45  E-value=0.00084  Score=46.65  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455599999999999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00081  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4889999999999999999774

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.00082  Score=48.03  Aligned_cols=21  Identities=14%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|+|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999965

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.001  Score=50.22  Aligned_cols=23  Identities=35%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-+++++|++|||||++++.|..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHH
Confidence            34889999999999999998865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.34  E-value=0.001  Score=49.39  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999988753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00096  Score=49.49  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998774

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.30  E-value=0.00066  Score=50.00  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      +.++|+.|+|||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999998853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.29  E-value=0.0011  Score=49.34  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00058  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +-|++.|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0008  Score=49.73  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +.++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999999873

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.27  E-value=0.0016  Score=46.08  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..+-|.|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355689999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.0013  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      +.|+|+.|+|||||++.+.+-.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999998753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.18  E-value=0.025  Score=42.00  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=52.2

Q ss_pred             EEEEEEeCCCchhhhh-hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCCCCCCH
Q 027292           66 VKAQIWDTAGQERYRA-VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIV-IILIGNKSDLEEQRAVPT  142 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-iilv~nK~Dl~~~~~~~~  142 (225)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++..+......+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4588999986432222 222334568888888776 45555555555555544432 2333 336779887654    34


Q ss_pred             HHHHHHHHHcCCeEEE
Q 027292          143 EDAKEFAQKEGLFFLE  158 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~  158 (225)
                      +..+++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5677788888877544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.15  E-value=0.00085  Score=50.31  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +++|+|++|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999997765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.12  E-value=0.0014  Score=50.54  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|+++|+||+|||.|++.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999999763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.08  E-value=0.0016  Score=48.89  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|+|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.07  E-value=0.0023  Score=47.64  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.|++.|++|+|||+|++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            457999999999999999999763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.05  E-value=0.0016  Score=48.71  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +.++|+.|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0018  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..++|.|++|+|||++++.++..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.98  E-value=0.0017  Score=48.59  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-++|.|++|+|||++++.+...
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHH
Confidence            33456799999999999998763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.96  E-value=0.00091  Score=49.65  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      .+.|+|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.002  Score=47.68  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ....+++.|++|+||||+++.++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.95  E-value=0.0023  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           17 VFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.88  E-value=0.0024  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+.|.|-|++||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36788889999999999998865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.81  E-value=0.0023  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|.|++|+|||||++.++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478899999999999999865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.78  E-value=0.0023  Score=51.83  Aligned_cols=21  Identities=38%  Similarity=0.806  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ||+++|++|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999965

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.0025  Score=47.41  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|++.|++|+|||+|++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999863

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0031  Score=45.47  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+-|+|-|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0031  Score=45.89  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..+++.|++|+||||+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46899999999999999988653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.004  Score=44.07  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +.+-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457789999999999999998854

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0033  Score=45.78  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..+++.|++|+|||++++.++..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0035  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34899999999999999999863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0035  Score=46.90  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .|++.|++|+|||+|++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0042  Score=44.80  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      =|+|.|++||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999998865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0039  Score=45.51  Aligned_cols=22  Identities=14%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .++|.|++|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999998763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.39  E-value=0.0044  Score=43.96  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+-|+|-|..||||||+++.|..
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0033  Score=49.95  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=18.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-++++||++|||||+|++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            44679999999999999876543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.24  E-value=0.0057  Score=43.71  Aligned_cols=22  Identities=14%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.20  E-value=0.0056  Score=44.20  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..+-|.|.|.+|||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0047  Score=46.40  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -.|++.|++|+|||+|+++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35999999999999999999774

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0076  Score=46.19  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ....+-|+|.|.+|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45678899999999999999988854

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.91  E-value=0.0067  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..-+++++|++|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456699999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.011  Score=42.04  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|.|++|+|||+|+..++..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.47  E-value=0.0046  Score=47.89  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999999864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.016  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-.++++|++|+|||.|++.|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            34688999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.017  Score=43.64  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=20.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHh
Q 027292           14 IDYVFKVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        14 ~~~~~~I~vlG~~g~GKSsLi~~l~   38 (225)
                      ....+-|.|-|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3446889999999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.34  E-value=0.011  Score=44.42  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .-|.|.|..|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.29  E-value=0.015  Score=40.61  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -|+|.|++|+|||||.-.|....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.012  Score=42.67  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -++|.|++|+|||+|+..++..-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.013  Score=42.01  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.23  E-value=0.019  Score=40.97  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++-|+|.|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46689999999999999998854

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.09  E-value=0.013  Score=45.89  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -+++.|+||+|||+|...+++
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.07  E-value=0.018  Score=40.32  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -|+|.|++|+|||+|.-.|....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            48999999999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.01  E-value=0.015  Score=42.57  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 027292           19 KVVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      -++|.|++|+|||+|.-.++...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999887643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.00  E-value=0.02  Score=44.23  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=23.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ...++|.|=|.-|+||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            35789999999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.011  Score=43.13  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.94  E-value=0.016  Score=41.88  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +++.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.0028  Score=44.76  Aligned_cols=20  Identities=35%  Similarity=0.556  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .+|+|+.|+|||||+.+|..
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.024  Score=40.58  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999988654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.018  Score=41.37  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.66  E-value=0.019  Score=44.08  Aligned_cols=21  Identities=19%  Similarity=0.490  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445699999999999999764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.55  E-value=0.02  Score=41.61  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|.|++|+|||+|+..++..
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.53  E-value=0.024  Score=39.28  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARNEF   42 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~~~   42 (225)
                      .-|++.|++|+|||++.-.+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999988887643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.42  E-value=0.022  Score=41.31  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|.|++|+|||+|...++..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998763

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.40  E-value=0.026  Score=43.49  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292           16 YVFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.13  E-value=0.032  Score=44.22  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027292           20 VVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+|.|++|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999998774

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.027  Score=40.33  Aligned_cols=20  Identities=10%  Similarity=0.360  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      +++.|++|+|||++++.++.
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.015  Score=44.09  Aligned_cols=18  Identities=28%  Similarity=0.591  Sum_probs=16.4

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 027292           20 VVLIGDSAVGKSQILARF   37 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l   37 (225)
                      -+|+|+.|+|||++++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            378999999999999987

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.028  Score=40.89  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578899999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.03  Score=40.79  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -++|.|++|+|||+|...++..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.028  Score=41.11  Aligned_cols=20  Identities=30%  Similarity=0.497  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|.|++|+|||++++.++.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999998765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.99  E-value=0.022  Score=44.01  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           16 YVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        16 ~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.73  E-value=0.028  Score=44.25  Aligned_cols=19  Identities=26%  Similarity=0.550  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027292           20 VVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~   38 (225)
                      -+|+|+.|+|||+|+.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999974

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.57  E-value=0.11  Score=38.60  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      =+.|.|++++|||+|+..++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3678999999999999887663

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.52  E-value=0.014  Score=44.23  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=15.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      =|.|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.47  E-value=0.036  Score=39.77  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -++|.|++|+|||+|+..++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            477889999999999877654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.46  E-value=0.037  Score=41.14  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999988864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.25  E-value=0.62  Score=32.91  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCCCHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAVPTED  144 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~  144 (225)
                      +.+.++|+++....  .....+..+|.++++...+ ..+.....+....+.+.   +.|++ +|+|+.+... .......
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            46899999885432  2344566799999999875 44555555555555433   66654 7889998765 3344444


Q ss_pred             HHHH
Q 027292          145 AKEF  148 (225)
Q Consensus       145 ~~~~  148 (225)
                      .+++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4433

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.038  Score=43.89  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-+++|+|.+|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34699999999999999887764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.044  Score=39.36  Aligned_cols=20  Identities=15%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999998864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.056  Score=41.30  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .++++|++|+|||.|.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578999999999999998764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.77  E-value=0.036  Score=39.44  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 027292           18 FKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      --+++.|++++|||.|+..|+.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            45789999999999999988663

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.43  E-value=0.054  Score=40.04  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027292           20 VVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~   39 (225)
                      ++|.|++|+|||+|+-.++.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            66999999999999987754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.065  Score=40.33  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.68  E-value=0.075  Score=38.52  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.28  E-value=0.056  Score=40.47  Aligned_cols=18  Identities=11%  Similarity=0.475  Sum_probs=14.1

Q ss_pred             EEEEcCCCCCHHHH-HHHH
Q 027292           20 VVLIGDSAVGKSQI-LARF   37 (225)
Q Consensus        20 I~vlG~~g~GKSsL-i~~l   37 (225)
                      ++|+|.+|+|||+. ++++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            67899999999964 4443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.02  E-value=0.068  Score=40.39  Aligned_cols=18  Identities=17%  Similarity=0.543  Sum_probs=14.3

Q ss_pred             EEEEcCCCCCHHH-HHHHH
Q 027292           20 VVLIGDSAVGKSQ-ILARF   37 (225)
Q Consensus        20 I~vlG~~g~GKSs-Li~~l   37 (225)
                      ++|.|.+|+|||+ |++++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHH
Confidence            7899999999995 44443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.54  E-value=0.57  Score=34.61  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027292           19 KVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      -+.|.|++++|||+|+-.++.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            367899999999999877764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.03  E-value=0.12  Score=38.47  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 027292           17 VFKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        17 ~~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .--+.+.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            34578889999999999998876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.10  E-value=1.8  Score=28.50  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             HhhhcCCCEEEEEEeCCCh--h--------hHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           84 SAYYRGAVGAMLVYDISRR--Q--------SFDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~--~--------s~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      ...++.+|++|+..-....  +        ...-++.+...+.++.. +.-++++.|-+|
T Consensus        63 ~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvD  121 (144)
T d1mlda1          63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVN  121 (144)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHH
T ss_pred             HHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchh
Confidence            4457789988887654321  1        12223445556666643 566677767666

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.52  E-value=0.19  Score=37.49  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |++++|.+|+|||+|+..++.+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.52  E-value=0.22  Score=32.15  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=22.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292           15 DYVFKVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        15 ~~~~~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      .+-+.|++-|..|+||++|.+.|...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.18  Score=39.05  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=15.8

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 027292           19 KVVLIGDSAVGKSQILARF   37 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l   37 (225)
                      -++|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.08  E-value=0.19  Score=36.81  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 027292           18 FKVVLIGDSAVGKSQILARFAR   39 (225)
Q Consensus        18 ~~I~vlG~~g~GKSsLi~~l~~   39 (225)
                      .-|+|.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3489999999999999998854

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.51  E-value=0.18  Score=35.11  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCc
Q 027292           20 VVLIGDSAVGKSQILARFARNE   41 (225)
Q Consensus        20 I~vlG~~g~GKSsLi~~l~~~~   41 (225)
                      |+|+|...+|||.+...+....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999997543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.17  E-value=0.65  Score=31.03  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=29.3

Q ss_pred             HhhhcCCCEEEEEEeCCChhh----------HHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           84 SAYYRGAVGAMLVYDISRRQS----------FDHIPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        84 ~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                      ...++++|++|+.......+.          ..-+..+...+.++...+.-++++.|-+|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            446788999998876554222          12233455556665554555666666665

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.05  E-value=0.24  Score=36.64  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      -+.|.|++|+|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3678999999999999887653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.04  E-value=1.7  Score=29.64  Aligned_cols=101  Identities=13%  Similarity=0.189  Sum_probs=56.5

Q ss_pred             ceeeeEEEEcC-CCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------------
Q 027292           15 DYVFKVVLIGD-SAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------------   79 (225)
Q Consensus        15 ~~~~~I~vlG~-~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------------   79 (225)
                      ...+||.|+|. .++|-+ |+..|..+.....                 ...+.+.++|.+.....              
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            35789999996 677855 4555655432111                 12234556666652211              


Q ss_pred             -------hhhhHhhhcCCCEEEEEEeCCChh--hHHh--------HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292           80 -------RAVTSAYYRGAVGAMLVYDISRRQ--SFDH--------IPRWLEELRSHADKNIVIILIGNKSD  133 (225)
Q Consensus        80 -------~~~~~~~~~~~d~~i~v~d~~~~~--s~~~--------~~~~~~~~~~~~~~~~piilv~nK~D  133 (225)
                             .......+.++|++|++-......  +...        +..+...+..+...+.-+++|.|-+|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   011234567899999887665422  2111        23344556666555666777777666

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.00  E-value=4  Score=28.28  Aligned_cols=82  Identities=9%  Similarity=-0.086  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCCHHH
Q 027292           66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTED  144 (225)
Q Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~  144 (225)
                      +.+.++|+|+....  .....+..+|.+++|.... ..+.....+.+..+.+.   +.+ +-+|+|+.+...    ....
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~----~~~~  179 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLG----IEMA  179 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTT----HHHH
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc---cccccccccccccccc----ccch
Confidence            44789999885432  2334556799999998875 34444443333333333   333 447789986432    1223


Q ss_pred             HHHHHHHcCCeEE
Q 027292          145 AKEFAQKEGLFFL  157 (225)
Q Consensus       145 ~~~~~~~~~~~~~  157 (225)
                      .+.+.+.++.+++
T Consensus       180 ~~~i~~~~~~~~~  192 (232)
T d1hyqa_         180 KNEIEAILEAKVI  192 (232)
T ss_dssp             HHHHHHHTTSCEE
T ss_pred             hhhHHhhcCCeEE
Confidence            3455666676644

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=0.42  Score=33.38  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             eEEEEcCC-CCCHHHHHHHHhc
Q 027292           19 KVVLIGDS-AVGKSQILARFAR   39 (225)
Q Consensus        19 ~I~vlG~~-g~GKSsLi~~l~~   39 (225)
                      |++|.|-. ||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            78999995 9999998877754

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=82.53  E-value=0.24  Score=32.79  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=16.4

Q ss_pred             CCcEEEEEeCCCCCCCCCCCHHH
Q 027292          122 NIVIILIGNKSDLEEQRAVPTED  144 (225)
Q Consensus       122 ~~piilv~nK~Dl~~~~~~~~~~  144 (225)
                      +.++++.+-..|-..........
T Consensus       106 g~~Viv~GLd~Df~~~~F~~~~~  128 (139)
T d2b8ta1         106 GFVVIISGLDKNFKGEPFGPIAK  128 (139)
T ss_dssp             TCEEEEECCSBCTTSSBCTTHHH
T ss_pred             CceEEEEEeccccccCcCccHHH
Confidence            78999999999986654444333

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.76  E-value=0.35  Score=36.10  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027292           19 KVVLIGDSAVGKSQILARFARN   40 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~~~   40 (225)
                      |+.++|.+|+|||+|+..++.+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998777643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.56  E-value=0.52  Score=34.68  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=15.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027292           19 KVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~   38 (225)
                      -|++.|-.|+||||+.-.+.
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHHH
Confidence            45678999999999776653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.35  E-value=0.51  Score=30.49  Aligned_cols=20  Identities=20%  Similarity=0.101  Sum_probs=15.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027292           19 KVVLIGDSAVGKSQILARFA   38 (225)
Q Consensus        19 ~I~vlG~~g~GKSsLi~~l~   38 (225)
                      ..+|.+++|+|||.++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45789999999998876544