Citrus Sinensis ID: 027306

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK
ccccccccccccccccccccccccEEEEEEcEEEEccccccEEEccccccccccccccccEEEEcccEEEEEccccEEEEEccccEEEEEEccEEEEEcccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEEEEEccEEEEEcccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHHccccccccccccEEEcccEEEEEcccccccc
cccccccccccccccccEEcccccEEEEEEEEEEEccEEEEEEEEEcccccccEEcccccEEEEEccEEEEEEccEEEEEEcccccEEEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccEEEEEccEEEEEccccccEEEcccccEEEEEEEccEEEEEEccHHHHHHHHHHHHcccccccccccEEEEccccccEEcccccccc
massiassfhtsnlksiffgerngfsmsnvpvnrvgfsrktieckesrigkqpievpsnvtitlggqdlkvkgplgelslvyprevkvdredSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLgfshpvrmtipdgikvnveentritvsgydksaIGQFAASirkwrppepykgkgvkyVDEVIRRkegkagkkk
massiassfhtsnLKSIFFGERNGFSMSNVPVNRVGFSRKTIeckesrigkqpievpsnvtitlggqdlkvkgplgelslvyprevkvdredsflrvrktvetrranqmhglfrtltdnmVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVrmtipdgikvnveentritvsgydksaigqfaasirkwrppepykgkgvkyvdevirrkegkagkkk
MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK
*************LKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEV************
****************************NVPV**VGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK*****
*********HTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR*********
**********TSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
O23049223 50S ribosomal protein L6, yes no 0.986 0.995 0.769 9e-98
B1WQS5179 50S ribosomal protein L6 yes no 0.791 0.994 0.561 4e-52
B7KI01179 50S ribosomal protein L6 yes no 0.791 0.994 0.556 9e-51
B0C1E7179 50S ribosomal protein L6 yes no 0.791 0.994 0.556 3e-50
Q3SSV1177 50S ribosomal protein L6 yes no 0.773 0.983 0.551 2e-49
Q110C1179 50S ribosomal protein L6 yes no 0.791 0.994 0.550 3e-49
Q8DML8187 50S ribosomal protein L6 yes no 0.791 0.951 0.537 3e-49
A6TWG7179 50S ribosomal protein L6 yes no 0.786 0.988 0.539 5e-49
Q18CH5180 50S ribosomal protein L6 yes no 0.791 0.988 0.530 1e-48
Q1QN15177 50S ribosomal protein L6 yes no 0.773 0.983 0.545 2e-48
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1 Back     alignment and function desciption
 Score =  356 bits (913), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 174/226 (76%), Positives = 198/226 (87%), Gaps = 4/226 (1%)

Query: 1   MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
           MASS+ SSF     +S F G+RN F +S+ P  +VG+S KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 57

Query: 61  TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
           TI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDN
Sbjct: 58  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 117

Query: 120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
           MVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVS
Sbjct: 118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 177

Query: 180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
           GYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct: 178 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223
This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.
Arabidopsis thaliana (taxid: 3702)
>sp|B1WQS5|RL6_CYAA5 50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|B7KI01|RL6_CYAP7 50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7424) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|B0C1E7|RL6_ACAM1 50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|Q3SSV1|RL6_NITWN 50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|Q110C1|RL6_TRIEI 50S ribosomal protein L6 OS=Trichodesmium erythraeum (strain IMS101) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|Q8DML8|RL6_THEEB 50S ribosomal protein L6 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|A6TWG7|RL6_ALKMQ 50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|Q18CH5|RL6_CLOD6 50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1 Back     alignment and function description
>sp|Q1QN15|RL6_NITHX 50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplF PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
359485565226 PREDICTED: 50S ribosomal protein L6, chl 1.0 0.995 0.796 4e-99
356559805226 PREDICTED: 50S ribosomal protein L6, chl 1.0 0.995 0.778 5e-99
449453496233 PREDICTED: 50S ribosomal protein L6, chl 0.973 0.939 0.778 3e-98
356530868226 PREDICTED: 50S ribosomal protein L6, chl 1.0 0.995 0.778 9e-98
224128942227 predicted protein [Populus trichocarpa] 0.995 0.986 0.764 2e-96
15220443223 50S ribosomal protein L6 [Arabidopsis th 0.986 0.995 0.769 5e-96
255645959226 unknown [Glycine max] 1.0 0.995 0.761 6e-96
356559807223 PREDICTED: 50S ribosomal protein L6, chl 0.986 0.995 0.761 2e-95
226502158224 50S ribosomal protein L6 [Zea mays] gi|1 0.986 0.991 0.775 3e-95
297848784223 EMB2394 [Arabidopsis lyrata subsp. lyrat 0.986 0.995 0.765 3e-95
>gi|359485565|ref|XP_002279657.2| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Vitis vinifera] gi|297739290|emb|CBI28941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 180/226 (79%), Positives = 198/226 (87%), Gaps = 1/226 (0%)

Query: 1   MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
           MASSI  SF TSNL+S F GERNG  +S+VPV RVGF RKTIECKESRIGK+PIEVPSNV
Sbjct: 1   MASSITPSFQTSNLRSAFLGERNGIYVSSVPVTRVGFLRKTIECKESRIGKKPIEVPSNV 60

Query: 61  TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
           TITL GQDLKVKGPLGELS  YPREVKV +++S  L V+K  ETRRANQMHGLFRTLTDN
Sbjct: 61  TITLEGQDLKVKGPLGELSRTYPREVKVQKDESGILTVKKAFETRRANQMHGLFRTLTDN 120

Query: 120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
           MVVGVSKGFEK+LQ+VGVGYRA +EG+ LVL+LGFSHPVRM IP  +KV VE+NTRI VS
Sbjct: 121 MVVGVSKGFEKRLQLVGVGYRATVEGKDLVLNLGFSHPVRMPIPGDLKVKVEDNTRIIVS 180

Query: 180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
           GYDK  IGQFAAS+RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct: 181 GYDKCNIGQFAASVRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356559805|ref|XP_003548187.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449453496|ref|XP_004144493.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Cucumis sativus] gi|449515641|ref|XP_004164857.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530868|ref|XP_003534001.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224128942|ref|XP_002320459.1| predicted protein [Populus trichocarpa] gi|222861232|gb|EEE98774.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15220443|ref|NP_172011.1| 50S ribosomal protein L6 [Arabidopsis thaliana] gi|75277355|sp|O23049.1|RK6_ARATH RecName: Full=50S ribosomal protein L6, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2394; Flags: Precursor gi|189096131|pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|13430706|gb|AAK25975.1|AF360265_1 putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] gi|2388578|gb|AAB71459.1| Similar to Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698 come from this gene [Arabidopsis thaliana] gi|14532906|gb|AAK64135.1| putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] gi|21553840|gb|AAM62933.1| putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] gi|332189681|gb|AEE27802.1| 50S ribosomal protein L6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255645959|gb|ACU23468.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356559807|ref|XP_003548188.1| PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|226502158|ref|NP_001147133.1| 50S ribosomal protein L6 [Zea mays] gi|195607520|gb|ACG25590.1| 50S ribosomal protein L6 [Zea mays] Back     alignment and taxonomy information
>gi|297848784|ref|XP_002892273.1| EMB2394 [Arabidopsis lyrata subsp. lyrata] gi|297338115|gb|EFH68532.1| EMB2394 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2207190223 emb2394 "embryo defective 2394 0.986 0.995 0.769 1.4e-89
TIGR_CMR|CHY_2294182 CHY_2294 "ribosomal protein L6 0.791 0.978 0.494 6.4e-44
TIGR_CMR|CPS_0616177 CPS_0616 "ribosomal protein L6 0.773 0.983 0.528 1e-43
TIGR_CMR|GSU_2842179 GSU_2842 "ribosomal protein L6 0.791 0.994 0.511 2.2e-43
UNIPROTKB|P66311179 rplF "50S ribosomal protein L6 0.786 0.988 0.505 7.3e-43
UNIPROTKB|P46898179 rplF "50S ribosomal protein L6 0.786 0.988 0.477 4e-42
TIGR_CMR|BA_0125179 BA_0125 "ribosomal protein L6" 0.786 0.988 0.483 4.6e-41
TIGR_CMR|CJE_1860178 CJE_1860 "ribosomal protein L6 0.782 0.988 0.513 5.3e-40
TIGR_CMR|SPO_0500177 SPO_0500 "ribosomal protein L6 0.773 0.983 0.448 1.8e-39
UNIPROTKB|Q9KNZ9177 rplF "50S ribosomal protein L6 0.773 0.983 0.459 2.6e-38
TAIR|locus:2207190 emb2394 "embryo defective 2394" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 174/226 (76%), Positives = 198/226 (87%)

Query:     1 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
             MASS+ SSF     +S F G+RN F +S+ P  +VG+S KTIECKESRIGKQPI VPSNV
Sbjct:     1 MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 57

Query:    61 TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
             TI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDN
Sbjct:    58 TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 117

Query:   120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
             MVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVS
Sbjct:   118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 177

Query:   180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
             GYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct:   178 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0019843 "rRNA binding" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
TIGR_CMR|CHY_2294 CHY_2294 "ribosomal protein L6" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0616 CPS_0616 "ribosomal protein L6" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2842 GSU_2842 "ribosomal protein L6" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P66311 rplF "50S ribosomal protein L6" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P46898 rplF "50S ribosomal protein L6" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0125 BA_0125 "ribosomal protein L6" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1860 CJE_1860 "ribosomal protein L6" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0500 SPO_0500 "ribosomal protein L6" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNZ9 rplF "50S ribosomal protein L6" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8DML8RL6_THEEBNo assigned EC number0.53760.79110.9518yesno
A5ELL2RL6_BRASBNo assigned EC number0.54020.77330.9830yesno
Q89J99RL6_BRAJANo assigned EC number0.54590.77330.9830yesno
A0L5Y8RL6_MAGSMNo assigned EC number0.52290.77330.9830yesno
A7HWS6RL6_PARL1No assigned EC number0.55740.77330.9830yesno
Q0ID19RL6_SYNS3No assigned EC number0.53930.79110.9944yesno
B2UQM5RL6_AKKM8No assigned EC number0.51420.77770.9776yesno
Q488Z8RL6_COLP3No assigned EC number0.52870.77330.9830yesno
B1XJJ3RL6_SYNP2No assigned EC number0.50270.79110.9888yesno
Q3SSV1RL6_NITWNNo assigned EC number0.55170.77330.9830yesno
Q7UZV8RL6_PROMPNo assigned EC number0.53370.79110.9944yesno
Q1QN15RL6_NITHXNo assigned EC number0.54590.77330.9830yesno
Q6N4U8RL6_RHOPANo assigned EC number0.53440.77330.9830yesno
B8H4E9RL6_CAUCNNo assigned EC number0.53440.77330.9830yesno
B2ITP1RL6_NOSP7No assigned EC number0.52350.75550.9340yesno
Q318J8RL6_PROM9No assigned EC number0.54490.79110.9944yesno
B1WQS5RL6_CYAA5No assigned EC number0.56170.79110.9944yesno
A9BCN3RL6_PROM4No assigned EC number0.54490.79110.9944yesno
B7K234RL6_CYAP8No assigned EC number0.54490.79110.9944yesno
Q7V531RL6_PROMMNo assigned EC number0.52800.79110.9944yesno
B0C1E7RL6_ACAM1No assigned EC number0.55610.79110.9944yesno
Q0ABG0RL6_ALHEHNo assigned EC number0.51720.77330.9830yesno
A4YSK7RL6_BRASONo assigned EC number0.52870.77330.9830yesno
Q2IXP5RL6_RHOP2No assigned EC number0.53440.77330.9830yesno
Q31IW7RL6_THICRNo assigned EC number0.52870.77330.9830yesno
Q2JQN4RL6_SYNJANo assigned EC number0.53520.75550.9392yesno
Q110C1RL6_TRIEINo assigned EC number0.55050.79110.9944yesno
A4XBN1RL6_SALTONo assigned EC number0.52510.79110.9888yesno
A5GIT1RL6_SYNPWNo assigned EC number0.54490.79110.9944yesno
Q7V9X6RL6_PROMANo assigned EC number0.52240.79110.9944yesno
B4R8N2RL6_PHEZHNo assigned EC number0.52290.77330.9830yesno
Q134U4RL6_RHOPSNo assigned EC number0.53440.77330.9830yesno
Q9A8T8RL6_CAUCRNo assigned EC number0.53440.77330.9830yesno
Q8YPJ3RL6_NOSS1No assigned EC number0.54110.75550.9340yesno
Q9Z9J9RL6_BACHDNo assigned EC number0.51410.78660.9943yesno
Q3MFA7RL6_ANAVTNo assigned EC number0.54110.75550.9340yesno
Q18CH5RL6_CLOD6No assigned EC number0.53070.79110.9888yesno
Q2JIL3RL6_SYNJBNo assigned EC number0.52940.75550.9392yesno
A6TWG7RL6_ALKMQNo assigned EC number0.53930.78660.9888yesno
A8M514RL6_SALAINo assigned EC number0.53070.79110.9888yesno
A5GVX4RL6_SYNR3No assigned EC number0.53930.79110.9944yesno
B7KI01RL6_CYAP7No assigned EC number0.55610.79110.9944yesno
O23049RK6_ARATHNo assigned EC number0.76990.98660.9955yesno
A2BYS2RL6_PROM5No assigned EC number0.52240.79110.9944yesno
B8ELE8RL6_METSBNo assigned EC number0.53440.77330.9830yesno
B3QBW5RL6_RHOPTNo assigned EC number0.53440.77330.9830yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
PRK05498178 PRK05498, rplF, 50S ribosomal protein L6; Validate 3e-99
TIGR03654175 TIGR03654, L6_bact, ribosomal protein L6, bacteria 1e-95
CHL00140178 CHL00140, rpl6, ribosomal protein L6; Validated 5e-88
COG0097178 COG0097, RplF, Ribosomal protein L6P/L9E [Translat 1e-78
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 5e-24
TIGR03653170 TIGR03653, arch_L6P, archaeal ribosomal protein L6 2e-22
PRK05518180 PRK05518, rpl6p, 50S ribosomal protein L6P; Review 3e-22
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 8e-08
>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated Back     alignment and domain information 
 Score =  285 bits (732), Expect = 3e-99
 Identities = 96/177 (54%), Positives = 127/177 (71%)

Query: 47  SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
           SRIGK+PI +P+ V +T+ G  + VKGP GELS     +V V  ED+ + V +  ++++A
Sbjct: 2   SRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNPDVTVKVEDNEITVTRPDDSKKA 61

Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
             +HG  R L +NMVVGV++GFEKKL++VGVGYRA ++G+ L LSLG+SHPV   IP+GI
Sbjct: 62  RALHGTTRALINNMVVGVTEGFEKKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGI 121

Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
            V V + T I V G DK  +GQ AA IR +RPPEPYKGKG++Y  EV+RRKEGK  K
Sbjct: 122 TVEVPKPTEIVVKGIDKQLVGQVAAEIRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK 178

Length = 178
>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type Back     alignment and domain information
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated Back     alignment and domain information
>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P Back     alignment and domain information
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
CHL00140178 rpl6 ribosomal protein L6; Validated 100.0
PRK05498178 rplF 50S ribosomal protein L6; Validated 100.0
TIGR03654175 L6_bact ribosomal protein L6, bacterial type. 100.0
COG0097178 RplF Ribosomal protein L6P/L9E [Translation, ribos 100.0
KOG3254211 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PRK05518180 rpl6p 50S ribosomal protein L6P; Reviewed 100.0
TIGR03653170 arch_L6P archaeal ribosomal protein L6P. Members o 100.0
PTZ00179189 60S ribosomal protein L9; Provisional 100.0
PTZ00027190 60S ribosomal protein L6; Provisional 100.0
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 99.76
KOG3255179 consensus 60S ribosomal protein L9 [Translation, r 99.65
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 98.6
>CHL00140 rpl6 ribosomal protein L6; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.9e-69  Score=455.80  Aligned_cols=178  Identities=57%  Similarity=0.971  Sum_probs=175.2

Q ss_pred             ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306           46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS  125 (225)
Q Consensus        46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt  125 (225)
                      |||||++||.||+||+|+++++.|+|+||+|+|+++|++.++++.++|.+.+..|++++++++||||+||||+|||+||+
T Consensus         1 msrig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt   80 (178)
T CHL00140          1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPDLITIEIQDNSLFVSKKDESKKARALHGLYRTLINNMVIGVS   80 (178)
T ss_pred             CCcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCCCeEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306          126 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK  205 (225)
Q Consensus       126 ~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK  205 (225)
                      +||+++|+++|+||||.+++|.|.|+||||||+.++||+||+|+++++|+|+|+|+|||+||||||+||+||+|||||||
T Consensus        81 ~Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK  160 (178)
T CHL00140         81 EGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKELVGQFAAKIRSVRPPEPYKGK  160 (178)
T ss_pred             cCceEEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCeEEEeccCcccC
Q 027306          206 GVKYVDEVIRRKEGKAGK  223 (225)
Q Consensus       206 GI~y~~E~I~lK~gKk~k  223 (225)
                      ||+|.||+|++|+||++|
T Consensus       161 GI~y~~e~i~~K~gK~~~  178 (178)
T CHL00140        161 GIRYKGEVIRRKAGKAGK  178 (178)
T ss_pred             cEeECCEEEEEecccCCC
Confidence            999999999999999954

>PRK05498 rplF 50S ribosomal protein L6; Validated Back     alignment and domain information
>TIGR03654 L6_bact ribosomal protein L6, bacterial type Back     alignment and domain information
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>TIGR03653 arch_L6P archaeal ribosomal protein L6P Back     alignment and domain information
>PTZ00179 60S ribosomal protein L9; Provisional Back     alignment and domain information
>PTZ00027 60S ribosomal protein L6; Provisional Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3bbo_I223 Homology Model For The Spinach Chloroplast 50s Subu 7e-99
1rl6_A177 Ribosomal Protein L6 Length = 177 1e-45
1eg0_J171 Fitting Of Components With Known Structure Into An 2e-42
487d_J164 Seven Ribosomal Proteins Fitted To A Cryo-Electron 7e-40
1p85_E176 Real Space Refined Coordinates Of The 50s Subunit F 3e-39
1vs6_G177 Crystal Structure Of The Bacterial Ribosome From Es 3e-39
1pnu_E177 Crystal Structure Of A Streptomycin Dependent Ribos 7e-38
1nkw_E212 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-37
1nwx_E185 Complex Of The Large Ribosomal Subunit From Deinoco 4e-37
2gya_E167 Structure Of The 50s Subunit Of A Pre-Translocation 1e-36
2j01_H180 Structure Of The Thermus Thermophilus 70s Ribosome 6e-36
3tve_H170 Crystal Structure Analysis Of Ribosomal Decoding. T 1e-32
3fin_H160 T. Thermophilus 70s Ribosome In Complex With Mrna, 6e-29
3pyo_G159 Crystal Structure Of A Complex Containing Domain 3 7e-29
3j21_F184 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-10
3g4s_E172 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-06
1ffk_1177 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-06
1s72_E178 Refined Crystal Structure Of The Haloarcula Marismo 1e-06
2zkr_e192 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-04
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 223 Back     alignment and structure 
Iteration: 1

 Score =  356 bits (913), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 174/226 (76%), Positives = 198/226 (87%), Gaps = 4/226 (1%)
Query: 1   MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
           MASS+ SSF     +S F G+RN F +S+ P  +VG+S KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 57
Query: 61  TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
           TI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDN
Sbjct: 58  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 117
Query: 120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
           MVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVS
Sbjct: 118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 177
Query: 180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
           GYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct: 178 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223
>pdb|1RL6|A Chain A, Ribosomal Protein L6 Length = 177 Back     alignment and structure
>pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 164 Back     alignment and structure
>pdb|1P85|E Chain E, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 176 Back     alignment and structure
>pdb|1VS6|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 177 Back     alignment and structure
>pdb|1PNU|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 177 Back     alignment and structure
>pdb|1NKW|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 212 Back     alignment and structure
>pdb|1NWX|E Chain E, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 185 Back     alignment and structure
>pdb|2GYA|E Chain E, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 167 Back     alignment and structure
>pdb|2J01|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 180 Back     alignment and structure
>pdb|3TVE|H Chain H, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 170 Back     alignment and structure
>pdb|3FIN|H Chain H, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 160 Back     alignment and structure
>pdb|3PYO|G Chain G, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 159 Back     alignment and structure
>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184 Back     alignment and structure
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172 Back     alignment and structure
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 1e-117
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 1e-104
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 1e-104
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 1e-103
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 1e-102
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 5e-99
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 4e-66
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 3e-54
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 5e-51
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 1e-49
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 2e-45
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 4e-22
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223 Back     alignment and structure
 Score =  332 bits (853), Expect = e-117
 Identities = 174/226 (76%), Positives = 198/226 (87%), Gaps = 4/226 (1%)

Query: 1   MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
           MASS+ SSF     +S F G+RN F +S+ P  +VG+S KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSF---QPRSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 57

Query: 61  TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
           TI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDN
Sbjct: 58  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 117

Query: 120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
           MVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVS
Sbjct: 118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 177

Query: 180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
           GYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct: 178 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180 Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212 Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177 Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185 Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176 Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178 Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192 Back     alignment and structure
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 100.0
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 100.0
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 100.0
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 100.0
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 100.0
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 100.0
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 100.0
3j21_F184 50S ribosomal protein L6P; archaea, archaeal, KINK 100.0
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 100.0
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 100.0
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 100.0
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 100.0
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 99.95
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=1.1e-82  Score=550.07  Aligned_cols=222  Identities=78%  Similarity=1.227  Sum_probs=178.3

Q ss_pred             CcccccccccccccceeecccccccccccccccccccccccccccccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEE
Q 027306            1 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSL   80 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~   80 (225)
                      ||||++|+|+   +|++|+|+++.++.++.+.+..++++++++|+|||||++||.||+||+|+++++.|+|+||+|+|++
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~   77 (223)
T 3bbo_I            1 MASSLVSSFQ---PRSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELAL   77 (223)
T ss_dssp             --------------------------------------------CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEE
T ss_pred             CcccccchhH---HHHHhccccccccccccccccccchhhhcccccccccccceecCCCCEEEEeCCEEEEECCCeEEEE
Confidence            8999999999   6999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             EcCCCeEE-EEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceEEEEEEEEEeEEEEEeCCEEEEEccceEeEE
Q 027306           81 VYPREVKV-DREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVR  159 (225)
Q Consensus        81 ~~~~~v~v-~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~  159 (225)
                      +|++.+.+ +.+++.|.++.|+++++++++|||+||||+|||+|||+||+++|+|+|+||||.++|+.|+|+||||||+.
T Consensus        78 ~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~  157 (223)
T 3bbo_I           78 TYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVK  157 (223)
T ss_dssp             ECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHTTTCEEECEECCSTTCCEEECSSEEEECSSCSSCEE
T ss_pred             EcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEeeccCcEEEEEEeeeceEEEecCCEEEEEeeCCccEE
Confidence            99999999 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCceeecCeEEEeccCcccCCC
Q 027306          160 MTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK  225 (225)
Q Consensus       160 ~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKGI~y~~E~I~lK~gKk~kk~  225 (225)
                      ++||+||+++++++|+|+|+|+|||.||||||+||+||||||||||||+|.||+|+||+||++|||
T Consensus       158 ~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYKGKGI~y~~E~I~rK~gK~~kkk  223 (223)
T 3bbo_I          158 MQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK  223 (223)
T ss_dssp             EECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCCSCEETTCCCCCCCCCCSCCC
T ss_pred             EECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEeECCeEEEEeccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999998776
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Back     alignment and structure
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Back     alignment and structure
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d2qamg295 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escheri 6e-45
d2j01h289 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus 5e-43
d1rl6a289 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillu 9e-41
d2zjre190 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinoco 2e-40
d2qamg181 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich 7e-26
d2zjre278 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc 3e-23
d1rl6a175 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus 2e-21
d2j01h171 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus 2e-19
d2cqla187 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho 1e-18
d1vqoe179 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon 4e-18
d1vqoe293 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo 0.002
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 95 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

 Score =  143 bits (362), Expect = 6e-45
 Identities = 56/93 (60%), Positives = 66/93 (70%)

Query: 128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIG 187
           F KKLQ+VGVGYRAA++G V+ LSLGFSHPV   +P GI       T I + G DK  IG
Sbjct: 1   FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIG 60

Query: 188 QFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
           Q AA +R +R PEPYKGKGV+Y DEV+R KE K
Sbjct: 61  QVAADLRAYRRPEPYKGKGVRYADEVVRTKEAK 93
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 89 Back     information, alignment and structure
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 89 Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 90 Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Back     information, alignment and structure
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d2qamg295 Ribosomal protein L6 {Escherichia coli [TaxId: 562 100.0
d1rl6a289 Ribosomal protein L6 {Bacillus stearothermophilus 100.0
d2zjre190 Ribosomal protein L6 {Deinococcus radiodurans [Tax 100.0
d2j01h289 Ribosomal protein L6 {Thermus thermophilus [TaxId: 100.0
d2qamg181 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.94
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 99.92
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 99.91
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.91
d2zjre278 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.91
d2j01h171 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.86
d1vqoe293 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.66
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.2e-45  Score=273.95  Aligned_cols=95  Identities=59%  Similarity=0.986  Sum_probs=92.9

Q ss_pred             eEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCce
Q 027306          128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV  207 (225)
Q Consensus       128 f~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKGI  207 (225)
                      |+++|+|+||||||.++|+.|.|+||||||+.++||+||+++++++|.|+|+|+|||.||||||.||++|||||||||||
T Consensus         1 f~k~L~lvGVGYRa~~~g~~L~l~LGySH~i~~~iP~gI~v~~~~~t~i~i~g~dKq~vg~~Aa~Ir~~r~pepYKGKGI   80 (95)
T d2qamg2           1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGV   80 (95)
T ss_dssp             CCCCCCBCSSSCCCCCCTTEECCCSSSSSCCCEECCSSEECCCSSTTCCCCEESCHHHHHHHHHHHHTTTCCCTTSCCSB
T ss_pred             CeEEEEEEeEEEEEEEcCCEEEEEEecceeceecCCCCcEEEecCCCEEEEEEcCHHHHHHHHHHHhccCCCCCcCCCcE
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCeEEEeccCccc
Q 027306          208 KYVDEVIRRKEGKAG  222 (225)
Q Consensus       208 ~y~~E~I~lK~gKk~  222 (225)
                      +|.||+|+||+|||+
T Consensus        81 ~y~~E~i~~K~gKkK   95 (95)
T d2qamg2          81 RYADEVVRTKEAKKK   95 (95)
T ss_dssp             CCTTCCCCCCCCCCC
T ss_pred             eECCeEEEeccccCC
Confidence            999999999999963
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure