Citrus Sinensis ID: 027325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHccHHccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mgnlfvkkpkitdVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILgeklsaedEEEILAEFDNLEAQLAVqempevptegpseeqekldlpnvptkvpvasrvvaddaeiapaeastkrrvmeeplpa
Flexible Loop (DISEMBL)
mgnlfvkkpkitdvdraILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGpseeqekldlpnvptkvpvasrvvaddaeiapaeastkrrvmeeplpa
Low Complexity Region (SEG)
MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIrqkrkdrallalkkkraqeellkqVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA
Disordered region (IsUnstruct)
*********KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAE******LI*******ALLALKK*RAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL*******************INAIL***********************************************************************************
Disordered Region (DISOPRED)
*********************KTQ************VVIE*******************LALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN***********EDVQKLMDDTEEAKAYQDEINAI********DEEEILAEFDNL****************************************************************
Disordered Region (DISEMBL)
MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQE*****************LPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA
Disordered Region (DISPRO)
********PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPT**************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNLFVKKPKITDxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKQAARDLxxxxxxxxxxxxxxxxxxxxxLLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q8GXN6	219	Vacuolar protein sorting-	yes	no	0.973	1.0	0.804	1e-95
Q9FY89	216	Vacuolar protein sorting-	no	no	0.955	0.995	0.800	2e-92
Q54KZ4	218	Charged multivesicular bo	yes	no	0.786	0.811	0.426	6e-30
Q503V0	206	Charged multivesicular bo	no	no	0.844	0.922	0.407	9e-28
Q96FZ7	201	Charged multivesicular bo	yes	no	0.835	0.935	0.376	2e-27
Q5R861	201	Charged multivesicular bo	yes	no	0.835	0.935	0.376	3e-27
Q5ZL55	200	Charged multivesicular bo	yes	no	0.751	0.845	0.380	1e-26
P0C0A3	200	Charged multivesicular bo	yes	no	0.773	0.87	0.387	2e-26
O94318	226	Vacuolar protein sorting-	yes	no	0.866	0.862	0.364	3e-23
Q6GMA4	200	Charged multivesicular bo	N/A	no	0.653	0.735	0.389	2e-19

>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1

 Score =  348 bits (894), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 203/225 (90%), Gaps = 6/225 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           AL+KKR QEELLKQVD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+D
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+  SE
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKE-SE 179

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           E EKLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct: 180 ESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1

 Score =  338 bits (866), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/226 (80%), Positives = 195/226 (86%), Gaps = 11/226 (4%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKKR QEELLKQVD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+D
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPS 179
           VQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVP TE   
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180

Query: 180 EEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           EE EK+DLP+VPTK PVAS              STKR+V+EEPL A
Sbjct: 181 EEPEKMDLPDVPTKAPVASNET----------TSTKRKVLEEPLEA 216

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=2

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 20/197 (10%)

Query: 1   MGNLFV-------KKPKITDVDRAILSLKTQRRKLAQYQQQ-LDVVIEAEKQAARDLIRQ 52
           MG LF        K+ KI+  DRA+L+LK QR KL  YQ Q L++ I      A++  + 
Sbjct: 1   MGILFSHCSGGREKEDKISKTDRAVLNLKIQRDKLKNYQTQVLEIAI------AKECSKA 54

Query: 53  KRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 112
            +K++ALLALKKK+ QE++L +    L N+E+ +A++E A  Q  +FESLK G  ++K I
Sbjct: 55  GKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEI 114

Query: 113 QSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPE 172
           Q E++LEDV+ LM++T EA  YQ++I+  L  K S E+E+++L E D +E QL  Q+ P+
Sbjct: 115 QKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPK 174

Query: 173 VP-TEGPSEEQEKLDLP 188
           VP T+ P     K++LP
Sbjct: 175 VPETQLP-----KIELP 186

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3

 Score =  123 bits (309), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 130/201 (64%), Gaps = 11/201 (5%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF KK   ++T+ DRA+L LK QR KL QYQ+++ + ++ E+Q A+ L++  +KD+A
Sbjct: 1   MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
           LL LKKKR Q++LL++ +  + N+E+ + DIE A  +  V E LK G + +K +   +++
Sbjct: 61  LLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
           E+V+K+MD+T +A  YQ +I+ +L   L+ EDEE +LAE + +    A  E+PEVP E  
Sbjct: 121 EEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE-- 178

Query: 179 SEEQEKLDLPNVPTKVPVASR 199
                  +LP VP + PV  +
Sbjct: 179 -------ELPEVPEQEPVREK 192

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Danio rerio (taxid: 7955)

>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 14/202 (6%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+R  RK+RA
Sbjct: 1   MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
            L LKKKR QE+LL + +  + ++E  +  IE    +  V E L+ G   +  +   +++
Sbjct: 61  KLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
           E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  +    E+PEVP+E  
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSE-- 176

Query: 179 SEEQEKLDLP-NVPTKVPVASR 199
                   LP  +P  VPV +R
Sbjct: 177 -------PLPEKIPENVPVKAR 191

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Homo sapiens (taxid: 9606)

>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 14/202 (6%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+R  RK+RA
Sbjct: 1   MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
            L LKKKR QE+LL + +  + ++E  +  IE    +  V E L+ G   +  +   +++
Sbjct: 61  KLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
           E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  +    E+PEVP+E  
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSE-- 176

Query: 179 SEEQEKLDLP-NVPTKVPVASR 199
                   LP  +P  VPV +R
Sbjct: 177 -------PLPEKIPEDVPVKAR 191

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membrane.

Pongo abelii (taxid: 9601)

>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 114/176 (64%), Gaps = 7/176 (3%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++ + +E E++ AR L+++ +K++A
Sbjct: 1   MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
           +L LKKKR QE+LL + D  + N+E+ + DIE    +  V E LK G   +  +   +++
Sbjct: 61  MLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP 174
           E+V++++ +T++A  YQ +I+ IL   L+ EDE+ IL E + +      QE  E+P
Sbjct: 121 EEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAI-----TQEQLELP 171

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Gallus gallus (taxid: 9031)

>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2 SV=2

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 112/178 (62%), Gaps = 4/178 (2%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF +K   ++T+ DRAIL LK QR KL QYQ+++   +E E+  AR L+R  RK+RA
Sbjct: 1   MGNLFGRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKERA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
            L LKKKR +E+LL + +  + ++E  +  IE    +  V E L+ G   +  +   +++
Sbjct: 61  KLLLKKKRYREQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTE 176
           E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E + +  +    E+PEVP+E
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQM--ELPEVPSE 176

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Mus musculus (taxid: 10090)

>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps20 PE=3 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 112/195 (57%)

Query: 4   LFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK 63
           + V   KI D DR+ILS+K QR KL +Y ++L+ + + E   AR  +R   K  AL ALK
Sbjct: 1   MGVNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALK 60

Query: 64  KKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQK 123
            K+    L+ Q  G L N+EQ L+ IE    QK V   L+ GTN I+ +Q+++ LE V +
Sbjct: 61  AKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGR 120

Query: 124 LMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQE 183
           + +D +EA +Y DE+N +L  ++S + E+EI  E D+L  +   +++ ++   G +    
Sbjct: 121 ICNDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTG 180

Query: 184 KLDLPNVPTKVPVAS 198
              LP+VP K  + S
Sbjct: 181 VDVLPSVPLKNAIPS 195

Class E VPS protein implicated in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. The lumenal sequestrated membrane proteins will be targeted into the vacuole after fusion of the endosome with the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6GMA4|CHM6A_XENLA Charged multivesicular body protein 6-A OS=Xenopus laevis GN=chmp6-a PE=2 SV=3

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 100/149 (67%), Gaps = 2/149 (1%)

Query: 1   MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
           MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++ + ++ E++ A+ L+   +K++A
Sbjct: 1   MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKA 60

Query: 59  LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
            L LKKKR QE+LL++ D  + N+E+ + DIE A  +  V E LK G   +K +   +++
Sbjct: 61  KLLLKKKRYQEQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSI 120

Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLS 147
           E+V+++MD+T+E   YQ +I+ +L   L+
Sbjct: 121 EEVERIMDETQEGIEYQRQIDEMLSGSLT 149

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224083490	222	predicted protein [Populus trichocarpa]	0.982	0.995	0.853	2e-99
224096083	222	predicted protein [Populus trichocarpa]	0.982	0.995	0.840	3e-97
18424760	219	vacuolar protein sorting-associated prot	0.973	1.0	0.804	8e-94
21553365	219	unknown [Arabidopsis thaliana]	0.973	1.0	0.8	1e-93
297793977	219	SNF7 family protein [Arabidopsis lyrata	0.973	1.0	0.795	2e-93
357464749	217	Vacuolar protein sorting-associated prot	0.964	1.0	0.773	4e-91
297806961	217	SNF7 family protein [Arabidopsis lyrata	0.96	0.995	0.805	4e-91
255639580	215	unknown [Glycine max]	0.955	1.0	0.782	9e-91
15242368	216	vacuolar protein sorting-associated prot	0.955	0.995	0.800	1e-90
363807342	215	uncharacterized protein LOC100820408 [Gl	0.955	1.0	0.786	2e-90

>gi|224083490|ref|XP_002307048.1| predicted protein [Populus trichocarpa] gi|222856497|gb|EEE94044.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/226 (85%), Positives = 209/226 (92%), Gaps = 5/226 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGN+FVKKPKITDVDRAILSLKTQRRKLAQYQQQL+ VIEAEKQAA+DLIR+KRKDRALL
Sbjct: 1   MGNIFVKKPKITDVDRAILSLKTQRRKLAQYQQQLEAVIEAEKQAAKDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKK+ QEELLKQVD WLINVEQQLADIELASKQKAVFESLKSGT+AIKAIQSE+NL+D
Sbjct: 61  ALKKKKTQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGTDAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT EAKAYQDEINAILGEKLSAEDEEEILAEF+NLEAQ+AVQE PEVPT+  SE
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFENLEAQMAVQEWPEVPTKVLSE 180

Query: 181 EQE-KLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           EQE KLDLP+VPTK P    V+ DDAE A AE ST+R+V+EEPLPA
Sbjct: 181 EQEQKLDLPDVPTKPP----VLVDDAETASAEVSTRRKVLEEPLPA 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096083|ref|XP_002310532.1| predicted protein [Populus trichocarpa] gi|222853435|gb|EEE90982.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/226 (84%), Positives = 207/226 (91%), Gaps = 5/226 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQL+ VIEAEK AA+DLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLETVIEAEKLAAKDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKK+ QEELLKQVD WLINVEQQLADIELASKQKAVFESLKSGT+AIKAIQSE+NL+D
Sbjct: 61  ALKKKKTQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGTDAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT EAKAYQDEINAILGEKLSAEDEEEILAEF++LE Q+AVQ++PEVPT   SE
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFEDLETQVAVQDLPEVPTIVVSE 180

Query: 181 EQE-KLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           EQE KLDLP+VPTK P    V+ DDAEI+ AE  TKR+V+EEPLPA
Sbjct: 181 EQEQKLDLPDVPTKPP----VLVDDAEISSAEVPTKRKVLEEPLPA 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424760|ref|NP_568980.1| vacuolar protein sorting-associated protein 20-1 [Arabidopsis thaliana] gi|75151255|sp|Q8GXN6.1|VP201_ARATH RecName: Full=Vacuolar protein sorting-associated protein 20 homolog 1; Short=AtVPS20-1; AltName: Full=Charged multivesicular body protein 6 homolog 1; AltName: Full=ESCRT-III complex subunit VPS20 homolog 1 gi|26451321|dbj|BAC42761.1| unknown protein [Arabidopsis thaliana] gi|28973341|gb|AAO63995.1| unknown protein [Arabidopsis thaliana] gi|332010426|gb|AED97809.1| vacuolar protein sorting-associated protein 20-1 [Arabidopsis thaliana]

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 203/225 (90%), Gaps = 6/225 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           AL+KKR QEELLKQVD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+D
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+  SE
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKE-SE 179

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           E EKLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct: 180 ESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553365|gb|AAM62458.1| unknown [Arabidopsis thaliana]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/225 (80%), Positives = 203/225 (90%), Gaps = 6/225 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           AL+KKR QEELLKQVD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+D
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT +AKAYQDE+N+ILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+  SE
Sbjct: 121 VQKLMDDTADAKAYQDELNSILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKE-SE 179

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           E EKLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct: 180 ESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793977|ref|XP_002864873.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310708|gb|EFH41132.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 205/225 (91%), Gaps = 6/225 (2%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKP+IT+VDRAILSLKTQRRKL+QYQQ+L+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLSQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           AL+KKR QEELLKQVD W+INVEQQLADIEL SKQKAVFESLK G +AIKAIQSE++L+D
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLADIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT +AKAYQDE+NAILGEKLSAEDEE++LAEFDNLE+QL V EMP+VPT+  SE
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGEKLSAEDEEDVLAEFDNLESQLIVDEMPQVPTKE-SE 179

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           E +KLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct: 180 ESDKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464749|ref|XP_003602656.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355491704|gb|AES72907.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|388497292|gb|AFK36712.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/225 (77%), Positives = 196/225 (87%), Gaps = 8/225 (3%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGN+FVKKPK+TDVDRAIL+LKTQRRKLAQYQQ+LD VIEAEKQAARDLIR+K+KDRALL
Sbjct: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKK+ QEELLKQVD WLINVEQQLADIEL SKQKAVFESLK+G+ AI+AIQSEIN+ED
Sbjct: 61  ALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIED 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT EAKAYQDEINAILGE+LSAEDEEEILAEF+NLE Q AV+++PE P+  P +
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDK 180

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
             EKLDLP+VPTK PV +         + AE S KR+VMEEPL A
Sbjct: 181 VDEKLDLPDVPTKAPVTT--------TSDAEVSIKRKVMEEPLAA 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806961|ref|XP_002871364.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317201|gb|EFH47623.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/226 (80%), Positives = 200/226 (88%), Gaps = 10/226 (4%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKKR QEELLKQVD WLINVEQQLADIEL SKQKAVFESLK G +AIKAIQSE+NL+D
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNSAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPS 179
           VQKLMDDT EAKAYQDE++AILG+KLSAEDEE+ILAEFDNLE+QL V++MPEVP TE   
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGDKLSAEDEEDILAEFDNLESQLIVEDMPEVPTTELVP 180

Query: 180 EEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           EE EK+DLP+VPTK PVAS     +AEI P    TKR+V+EEPL A
Sbjct: 181 EEPEKMDLPDVPTKAPVAS-----NAEITP----TKRKVLEEPLEA 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639580|gb|ACU20084.1| unknown [Glycine max]

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 176/225 (78%), Positives = 195/225 (86%), Gaps = 10/225 (4%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPK+TDVD+AIL+LKTQRRKLAQYQQ+LD VIEAEKQAARDLIR+K+KDRALL
Sbjct: 1   MGNLFVKKPKVTDVDKAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKK+ QEELLKQVD WLINVEQQLADIELASKQKAVFESLK+G +A+KAIQSEIN+ED
Sbjct: 61  ALKKKKTQEELLKQVDAWLINVEQQLADIELASKQKAVFESLKAGNDAMKAIQSEINIED 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT EAKAYQDEIN I+GEKLSAEDEEEILAEF++LE QL VQ++PEVP     E
Sbjct: 121 VQKLMDDTAEAKAYQDEINEIMGEKLSAEDEEEILAEFEDLEIQLTVQDLPEVPPSANEE 180

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
            +EKLDLP+VPTK PV S           AE  TKR+VMEEPL A
Sbjct: 181 IEEKLDLPDVPTKAPVTS----------DAEVFTKRKVMEEPLAA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242368|ref|NP_196488.1| vacuolar protein sorting-associated protein 20-2 [Arabidopsis thaliana] gi|75173205|sp|Q9FY89.1|VP202_ARATH RecName: Full=Vacuolar protein sorting-associated protein 20 homolog 2; Short=AtVPS20-2; AltName: Full=Charged multivesicular body protein 6 homolog 2; AltName: Full=ESCRT-III complex subunit VPS20 homolog 2 gi|9955513|emb|CAC05452.1| putative protein [Arabidopsis thaliana] gi|34365667|gb|AAQ65145.1| At5g09260 [Arabidopsis thaliana] gi|51969450|dbj|BAD43417.1| unknown protein [Arabidopsis thaliana] gi|332003983|gb|AED91366.1| vacuolar protein sorting-associated protein 20-2 [Arabidopsis thaliana]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/226 (80%), Positives = 195/226 (86%), Gaps = 11/226 (4%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKKR QEELLKQVD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+D
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPS 179
           VQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVP TE   
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180

Query: 180 EEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
           EE EK+DLP+VPTK PVAS              STKR+V+EEPL A
Sbjct: 181 EEPEKMDLPDVPTKAPVASNET----------TSTKRKVLEEPLEA 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807342|ref|NP_001242629.1| uncharacterized protein LOC100820408 [Glycine max] gi|255640024|gb|ACU20303.1| unknown [Glycine max]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/225 (78%), Positives = 197/225 (87%), Gaps = 10/225 (4%)

Query: 1   MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
           MGNLFVKKPK+TDVD+AIL+LKTQRRKLAQYQQ+LD VIEAEKQAARDLIR+K+KDRALL
Sbjct: 1   MGNLFVKKPKVTDVDKAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALL 60

Query: 61  ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
           ALKKK+ QEELLKQVD WLINVEQQLADIELASKQKAVFESLK+G +A+KAIQSEIN+ED
Sbjct: 61  ALKKKKTQEELLKQVDAWLINVEQQLADIELASKQKAVFESLKAGNDAMKAIQSEINIED 120

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
           VQKLMDDT EAKAYQDEIN I+GEKLSAEDEEEILAEF++LE QL VQ++PEVP     E
Sbjct: 121 VQKLMDDTAEAKAYQDEINEIMGEKLSAEDEEEILAEFEDLEIQLTVQDLPEVPPSANEE 180

Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
            +EKL LP+VPTK PV S     DAE+     STKR+VMEEPL A
Sbjct: 181 IEEKLGLPDVPTKAPVTS-----DAEV-----STKRKVMEEPLAA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2184767	216	VPS20.2 "vacuolar protein sort	0.955	0.995	0.703	8.6e-72
ZFIN|ZDB-GENE-040924-2	206	chmp6b "chromatin modifying pr	0.844	0.922	0.343	2.5e-26
FB|FBgn0034744	212	Vps20 "Vacuolar protein sortin	0.897	0.952	0.330	7.6e-25
UNIPROTKB|Q5ZL55	200	CHMP6 "Charged multivesicular	0.866	0.975	0.321	1.4e-23
DICTYBASE|DDB_G0287021	218	vps20 "SNF7 family protein" [D	0.76	0.784	0.375	1.8e-23
ASPGD|ASPL0000059099	208	vps20 [Emericella nidulans (ta	0.875	0.947	0.331	2.6e-22
UNIPROTKB|Q148L0	201	CHMP6 "Chromatin modifying pro	0.84	0.940	0.313	3.4e-22
UNIPROTKB|F1NBY7	197	CHMP6 "Charged multivesicular	0.853	0.974	0.311	2.4e-21
UNIPROTKB|Q96FZ7	201	CHMP6 "Charged multivesicular	0.866	0.970	0.310	3.9e-21
POMBASE|SPBC215.14c	226	vps20 "ESCRT III complex subun	0.857	0.853	0.316	1e-20

TAIR|locus:2184767 VPS20.2 "vacuolar protein sorting-associated protein 20.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 159/226 (70%), Positives = 172/226 (76%)

Query:     1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXXXX 60
             MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLI          
Sbjct:     1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query:    61 XXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
                           VD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+D
Sbjct:    61 ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query:   121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPT-EGPS 179
             VQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVPT E   
Sbjct:   121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180

Query:   180 EEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
             EE EK+DLP+VPTK PVAS              STKR+V+EEPL A
Sbjct:   181 EEPEKMDLPDVPTKAPVASNETT----------STKRKVLEEPLEA 216

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040924-2 chmp6b "chromatin modifying protein 6b" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 69/201 (34%), Positives = 110/201 (54%)

Query:     1 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXX 58
             MGNLF KK   ++T+ DRA+L LK QR KL QYQ+++ + ++ E+Q A+ L+        
Sbjct:     1 MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKA 60

Query:    59 XXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
                              +  + N+E+ + DIE A  +  V E LK G + +K +   +++
Sbjct:    61 LLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSI 120

Query:   119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
             E+V+K+MD+T +A  YQ +I+ +L   L+ EDEE +LAE + +    A  E+PEVP E  
Sbjct:   121 EEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE-- 178

Query:   179 SEEQEKLDLPNVPTKVPVASR 199
                    +LP VP + PV  +
Sbjct:   179 -------ELPEVPEQEPVREK 192

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

FB|FBgn0034744 Vps20 "Vacuolar protein sorting 20" [Drosophila melanogaster (taxid:7227)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 70/212 (33%), Positives = 112/212 (52%)

Query:     1 MGNLFVKKPK------ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXX 54
             MG LF K  K      ITD D+A+L LK QR +L QYQ++++  +E ++  AR  +    
Sbjct:     1 MGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRLLARKCLQQGR 60

Query:    55 XXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQS 114
                                  D  L N+E+  ADIE A  +  V + LK+G  A+K +  
Sbjct:    61 KDRAKLLLRKKKYQESLLTNADKQLENLEKLAADIEFAQVEMKVLDGLKAGNAALKKVHE 120

Query:   115 EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQ---EMP 171
              +++++V+++MD+T E    Q EI+AIL + L+ +DEE++LAE D LEA+   Q   ++P
Sbjct:   121 MLDIDEVERIMDETREGIEKQQEIDAILTDVLTTQDEEDVLAELDALEAEEEQQKGAQLP 180

Query:   172 EVPTEGPSEEQEKLDLPNVPTKVPVASRVVAD 203
             +VPTE      E ++    P K     +V+ +
Sbjct:   181 DVPTEDLPIPAE-IESVEEPAKTKATKKVLVE 211

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZL55 CHMP6 "Charged multivesicular body protein 6" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 65/202 (32%), Positives = 109/202 (53%)

Query:     1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXX 58
             MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++ + +E E++ AR L+        
Sbjct:     1 MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKA 60

Query:    59 XXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
                              D  + N+E+ + DIE    +  V E LK G   +  +   +++
Sbjct:    61 MLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSI 120

Query:   119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL-EAQLAVQEMPEVPTEG 177
             E+V++++ +T++A  YQ +I+ IL   L+ EDE+ IL E + + + QL   E+P+VP+E 
Sbjct:   121 EEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQEQL---ELPDVPSEP 177

Query:   178 -PSEEQEKLDLPNVPTKVPVAS 198
              P E  E   + N P    VA+
Sbjct:   178 LPEEPPEATPVKNRPKPELVAA 199

GO:0015031 "protein transport" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

DICTYBASE|DDB_G0287021 vps20 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 69/184 (37%), Positives = 101/184 (54%)

Query:     7 KKPKITDVDRAILSLKTQRRKLAQYQQQ-LDVVIEAEKQAARDLIXXXXXXXXXXXXXXX 65
             K+ KI+  DRA+L+LK QR KL  YQ Q L++ I  E   A                   
Sbjct:    14 KEDKISKTDRAVLNLKIQRDKLKNYQTQVLEIAIAKECSKAGKKNQALLALKKKKYQEKM 73

Query:    66 XXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLM 125
                          L N+E+ +A++E A  Q  +FESLK G  ++K IQ E++LEDV+ LM
Sbjct:    74 LDESFAN------LQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLM 127

Query:   126 DDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPSEEQEK 184
             ++T EA  YQ++I+  L  K S E+E+++L E D +E QL  Q+ P+VP T+ P     K
Sbjct:   128 EETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPKVPETQLP-----K 182

Query:   185 LDLP 188
             ++LP
Sbjct:   183 IELP 186

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000059099 vps20 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 67/202 (33%), Positives = 102/202 (50%)

Query:     1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXXXX 60
             MGN      KI+  DRAIL +K QR KL +YQ+++ V+ + E   A++ +          
Sbjct:     1 MGNTN-SSHKISSQDRAILDMKNQRDKLQKYQKRITVLTDRETAIAKECLARNDRKRALL 59

Query:    61 XXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LE 119
                            D  L  +EQ  + +E A  QK V   L+ GT  ++ I  E+  +E
Sbjct:    60 ALRRKKYQESLLAKTDAQLAQLEQLTSQVEFALVQKDVLYGLQQGTQVLQMINKEMGGIE 119

Query:   120 DVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL--EAQLAVQEMPEVPTEG 177
              V+KL+ +TEEA+AYQ+EI+ +L   LS +DE+E+  E + L  EAQ  V  +P VPT  
Sbjct:   120 GVEKLLGETEEARAYQEEISQMLAGNLSNQDEDEVEDELEALQREAQGPVS-LPNVPTAP 178

Query:   178 PSEEQEKLDLPNVPTKVPVASR 199
             P  E  + +L     +    +R
Sbjct:   179 PEVETPEEELKKQKARAKARAR 200

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005938 "cell cortex" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

UNIPROTKB|Q148L0 CHMP6 "Chromatin modifying protein 6" [Bos taurus (taxid:9913)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 63/201 (31%), Positives = 105/201 (52%)

Query:     1 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXX 58
             MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E++ AR L+        
Sbjct:     1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLKQYQKRITQQLEREREIARQLLRDGRKERA 60

Query:    59 XXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
                              +  + ++E  +  IE    +  V E LK G   +  +   +++
Sbjct:    61 KLLLKKKRYREQLLDKTENQITSLETMVQSIEFTQIEMKVIEGLKIGNECLNKMHQVMSI 120

Query:   119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
             E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E D +  +    E+P VP+E P
Sbjct:   121 EEVERILDETQEAVDYQRQIDELLAGSFTQEDEDAILEELDAITQEQI--ELPAVPSE-P 177

Query:   179 SEEQEKLDLPNVPTKVPVASR 199
               E+       +P KVPV +R
Sbjct:   178 LPEK-------IPEKVPVKAR 191

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1NBY7 CHMP6 "Charged multivesicular body protein 6" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 63/202 (31%), Positives = 107/202 (52%)

Query:     1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXX 58
             MGNLF +K   ++T+ D+A+L    QR KL QYQ+++ + +E E++ AR L+        
Sbjct:     1 MGNLFGRKRRSRVTEQDKAVLQ---QRDKLRQYQKRISLGLERERELARQLLKEGKKEKA 57

Query:    59 XXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
                              D  + N+E+ + DIE    +  V E LK G   +  +   +++
Sbjct:    58 MLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSI 117

Query:   119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL-EAQLAVQEMPEVPTEG 177
             E+V++++ +T++A  YQ +I+ IL   L+ EDE+ IL E + + + QL   E+P+VP+E 
Sbjct:   118 EEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQEQL---ELPDVPSEP 174

Query:   178 -PSEEQEKLDLPNVPTKVPVAS 198
              P E  E   + N P    VA+
Sbjct:   175 LPEEPPEATPVKNRPKPELVAA 196

GO:0015031 "protein transport" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

UNIPROTKB|Q96FZ7 CHMP6 "Charged multivesicular body protein 6" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/206 (31%), Positives = 107/206 (51%)

Query:     1 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXX 58
             MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+        
Sbjct:     1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA 60

Query:    59 XXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
                              +  + ++E  +  IE    +  V E L+ G   +  +   +++
Sbjct:    61 KLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120

Query:   119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
             E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  +    E+PEVP+E P
Sbjct:   121 EEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSE-P 177

Query:   179 SEEQEKLDLP-NVPTKV-PVASRVVA 202
               E+    +P NVP K  P  + +VA
Sbjct:   178 LPEK----IPENVPVKARPRQAELVA 199

GO:0015031 "protein transport" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

POMBASE|SPBC215.14c vps20 "ESCRT III complex subunit Vps20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 61/193 (31%), Positives = 99/193 (51%)

Query:     6 VKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIXXXXXXXXXXXXXXX 65
             V   KI D DR+ILS+K QR KL +Y ++L+ + + E   AR  +               
Sbjct:     3 VNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAK 62

Query:    66 XXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLM 125
                        G L N+EQ L+ IE    QK V   L+ GTN I+ +Q+++ LE V ++ 
Sbjct:    63 KLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRIC 122

Query:   126 DDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKL 185
             +D +EA +Y DE+N +L  ++S + E+EI  E D+L  +   +++ ++   G +      
Sbjct:   123 NDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVD 182

Query:   186 DLPNVPTKVPVAS 198
              LP+VP K  + S
Sbjct:   183 VLPSVPLKNAIPS 195

GO:0000815 "ESCRT III complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0006900 "membrane budding" evidence=IC

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0045324 "late endosome to vacuole transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96FZ7	CHMP6_HUMAN	No assigned EC number	0.3762	0.8355	0.9353	yes	no
Q8GXN6	VP201_ARATH	No assigned EC number	0.8044	0.9733	1.0	yes	no
Q5R861	CHMP6_PONAB	No assigned EC number	0.3762	0.8355	0.9353	yes	no
Q9FY89	VP202_ARATH	No assigned EC number	0.8008	0.9555	0.9953	no	no
O94318	VPS20_SCHPO	No assigned EC number	0.3641	0.8666	0.8628	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam03357	169	pfam03357, Snf7, Snf7	3e-36
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	7e-07
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	3e-06

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  125 bits (315), Expect = 3e-36
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 4/169 (2%)

Query: 16  RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
            AILSL+   R+L + Q+ L+  I+  +   + L ++  KD AL+ LK+K+  E+ L Q+
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 76  DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
           DG L N+EQ    IE A   + V  ++K G  A+KA+   ++++ +  LMD+ E+     
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 136 DEINAILGEKL---SAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEE 181
           DEI+ +L + L     EDEEE+ AE D L  ++  +E+ E+P   PS  
Sbjct: 121 DEISEMLSDTLDDADEEDEEELDAELDALLDEIGDEELVELP-SAPSGA 168

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 44  QAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK 103
           Q  R + + + K RA+  L++KR  +     +     N++Q     E     K   +++K
Sbjct: 49  QRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMK 108

Query: 104 SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILAEFDN 160
                +K    ++N++ V+ L D+  +      EI  I+G         DE+E+L E D 
Sbjct: 109 QAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDA 168

Query: 161 LEAQLAVQ-------EMPEVPTEGPSE 180
           L+  +  +       +   VP     +
Sbjct: 169 LDFDMEKEADASYLADALAVPGTKLPD 195

Length = 211

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 7   KKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKR 66
           KK    ++ +AIL  +     L + Q Q++  I+  +  A+  + Q +   A + LK+K+
Sbjct: 18  KKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKK 77

Query: 67  AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD 126
             E+ ++ +    + +E  + ++E     K    +L    N  K + +EIN + V+K++D
Sbjct: 78  LYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIID 137

Query: 127 DTEEAKAYQDEINAILGEKL-SAEDEEEILAEFDNLEAQ 164
             +E K  Q+EIN  L   L +  D++EI  E D L+ Q
Sbjct: 138 TIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ 176

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG2910	209	consensus Uncharacterized conserved protein predic	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
KOG1656	221	consensus Protein involved in glucose derepression	100.0
PTZ00464	211	SNF-7-like protein; Provisional	100.0
KOG1655	218	consensus Protein involved in vacuolar protein sor	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.96
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.95
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	99.68
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	99.58
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	99.45
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	98.86
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	98.5
PRK10698	222	phage shock protein PspA; Provisional	98.39
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	98.25
PTZ00464	211	SNF-7-like protein; Provisional	98.14
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.99
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	97.87
KOG1655	218	consensus Protein involved in vacuolar protein sor	97.56
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.23
KOG1656	221	consensus Protein involved in glucose derepression	96.74
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	95.53
COG5491	204	VPS24 Conserved protein implicated in secretion [C	95.17
KOG2910	209	consensus Uncharacterized conserved protein predic	94.02
PF05852	146	DUF848: Gammaherpesvirus protein of unknown functi	92.34
KOG2911	439	consensus Uncharacterized conserved protein [Funct	91.72
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	91.13
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	90.71
COG5491	204	VPS24 Conserved protein implicated in secretion [C	90.13
PRK04778	569	septation ring formation regulator EzrA; Provision	89.79
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	88.66
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	88.49
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	87.02
PRK14162	194	heat shock protein GrpE; Provisional	86.49
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	84.32
PRK14143	238	heat shock protein GrpE; Provisional	81.42
PRK14146	215	heat shock protein GrpE; Provisional	81.36
PRK14140	191	heat shock protein GrpE; Provisional	80.75

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=100.00  E-value=1e-45  Score=302.88  Aligned_cols=198  Identities=62%  Similarity=0.860  Sum_probs=186.1

Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI   80 (225)
Q Consensus         1 M~~lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~   80 (225)
                      ||++||++++||++|+||+.||.++++|.+|++++++.++..+..||.|++.|+|++|+.+||+|+++|..|.++++|+.
T Consensus         1 MG~lfsK~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~   80 (209)
T KOG2910|consen    1 MGNLFSKKSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLI   80 (209)
T ss_pred             CCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 027325           81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDN  160 (225)
Q Consensus        81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~  160 (225)
                      ||++++..||++...+.|+++|+.||.+||++|..|++|+|+++||+.+|.+++++||+++|++.++..|+|+|++||++
T Consensus        81 nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~Elda  160 (209)
T KOG2910|consen   81 NLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDA  160 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh-hcCCCCCCCCCCcccccCCCCCCCCCCCCCcc
Q 027325          161 LEAQLAV-QEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR  199 (225)
Q Consensus       161 L~~e~~~-~~~~~vp~~~~~~~~~~~~lP~vp~~~p~~~~  199 (225)
                      |+.+... .++|+||++. +.......+|++|...|+...
T Consensus       161 Lese~~~e~e~PevPs~e-p~lPek~~~~~~~~k~~~~~~  199 (209)
T KOG2910|consen  161 LESELEVEAELPEVPSTE-PELPEKEDLEDVPEKEPAASE  199 (209)
T ss_pred             HHHHhhhhhhcCCCCCCC-CCcccccccccccccccchhh
Confidence            9998766 5789999874 222334567888888877654

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=2.6e-41  Score=281.96  Aligned_cols=170  Identities=26%  Similarity=0.350  Sum_probs=160.4

Q ss_pred             CCCCCCCC--CC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKK--PK---------ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQE   69 (225)
Q Consensus         1 M~~lFg~k--~~---------ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e   69 (225)
                      |++|||++  +|         .|...+||++|+.+++.|.+|+.+|+.+|+++...||+++++|++.+|+.||||||+||
T Consensus         1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E   80 (191)
T PTZ00446          1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYE   80 (191)
T ss_pred             CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            78899986  22         34689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC
Q 027325           70 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SA  148 (225)
Q Consensus        70 ~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~-~~  148 (225)
                      ++|++++++++||++++++||++++|..||.||+.|+++||.+|+.|++|+|+++||+|+|++++++||+++|++++ ++
T Consensus        81 ~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~  160 (191)
T PTZ00446         81 QEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNN  160 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999874 57


Q ss_pred             CCHHHHHHHHHHHHHHHhhhcC
Q 027325          149 EDEEEILAEFDNLEAQLAVQEM  170 (225)
Q Consensus       149 ~DedELe~EL~~L~~e~~~~~~  170 (225)
                      +||+||++||++|+.+..+..+
T Consensus       161 ~DEdELe~ELe~Le~e~l~~~l  182 (191)
T PTZ00446        161 VDDDEIDKELDLLKEQTMEEKL  182 (191)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988766543

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-41  Score=279.62  Aligned_cols=198  Identities=29%  Similarity=0.438  Sum_probs=171.4

Q ss_pred             CCCCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQA-ARDLIRQKRKDRALLALKKKRAQEELLKQVDG   77 (225)
Q Consensus         1 M~~lFg~k--~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~-ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~   77 (225)
                      ||||||+.  ...+..+.+|.+|+.+...|.|+++.|+++|...... |+.|..+ ||+.|+.||||||.||+||.++++
T Consensus         4 ~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG   82 (221)
T KOG1656|consen    4 FSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDG   82 (221)
T ss_pred             HHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            68999975  2333467899999999999999999999999988665 7888655 888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHH
Q 027325           78 WLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEI  154 (225)
Q Consensus        78 ~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedEL  154 (225)
                      .+.+|+.+...||+|++|.+|+.+|+.|+++||++|+.||||+|+++||+|.|+.+.++||+++||.+++   ++|||||
T Consensus        83 ~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL  162 (221)
T KOG1656|consen   83 TLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDEL  162 (221)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985   6999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCCCC-CCC----ccccccccc
Q 027325          155 LAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKV-PVA----SRVVADDAE  206 (225)
Q Consensus       155 e~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~~~-p~~----~~~~~~~~~  206 (225)
                      .+||+.|+++..+.++-+++..       .+.||+||+.. |..    +.+.|||.+
T Consensus       163 ~~ELdeLeqeeld~~ll~~~~p-------~v~LP~vPs~~lPa~~~~~~~a~E~d~~  212 (221)
T KOG1656|consen  163 MAELDELEQEELDKELLDIRAP-------PVPLPDVPSIALPAKPASRPKAEEDDDD  212 (221)
T ss_pred             HHHHHHHHHHHHHHHHhccCCC-------CCCCCCCCccccCcccccCCCcchhhhH
Confidence            9999999999888776443322       23688888543 432    444455544

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=1.9e-39  Score=275.51  Aligned_cols=189  Identities=23%  Similarity=0.323  Sum_probs=156.1

Q ss_pred             CCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKK---PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQ-------KRKDRALLALKKKRAQEE   70 (225)
Q Consensus         1 M~~lFg~k---~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~-------~~k~~A~~~Lr~KK~~e~   70 (225)
                      ||||||++   |++| .+.+|..|+.....|.+++.+|+.++.    .+|+++++       +.|++|+.|||+||+||+
T Consensus         1 M~rlFG~~k~~p~~t-~~d~~~~l~~r~~~l~kKi~~ld~E~~----~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~   75 (211)
T PTZ00464          1 MNRLFGKKNKTPKPT-LEDASKRIGGRSEVVDARINKIDAELM----KLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQN   75 (211)
T ss_pred             CccccCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999975   5677 556779999999999999987776665    45555442       258999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---
Q 027325           71 LLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---  147 (225)
Q Consensus        71 ~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---  147 (225)
                      +++++.++++||++++++|++++++..||.||+.|+++||++|+.|++|+|+++||+|+|++++++||+++|+++++   
T Consensus        76 ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~  155 (211)
T PTZ00464         76 QQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPD  155 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999873   


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcc-cccCCCCCCCCCCCCC
Q 027325          148 AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEE-QEKLDLPNVPTKVPVA  197 (225)
Q Consensus       148 ~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~-~~~~~lP~vp~~~p~~  197 (225)
                      ++||+||++||++|+.++..   ..+|+|+++.+ .+...||++|...|..
T Consensus       156 ~~DEdELe~ELe~Le~e~~~---e~~~~~l~~~~~~p~~~~~~~~~~~~~~  203 (211)
T PTZ00464        156 DIDEDEMLGELDALDFDMEK---EADASYLADALAVPGTKLPDVPTDEKQQ  203 (211)
T ss_pred             CCCHHHHHHHHHHHHHHHhc---cccchhhhccccCCCCCCCCCCCccccc
Confidence            68999999999999998643   23455653211 1112455555554443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-31  Score=219.91  Aligned_cols=176  Identities=24%  Similarity=0.316  Sum_probs=153.3

Q ss_pred             CCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKK---PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQK-----RKDRALLALKKKRAQEELL   72 (225)
Q Consensus         1 M~~lFg~k---~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~-----~k~~A~~~Lr~KK~~e~~L   72 (225)
                      |+|+||++   .+......+|..+...-+.++++|.+|+.++.+++..+++. +.|     -|++|+++||+||+||+|+
T Consensus         1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~   79 (218)
T KOG1655|consen    1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK   79 (218)
T ss_pred             CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            89999986   23345677888888888899999999998888887766544 333     3679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCC
Q 027325           73 KQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--AED  150 (225)
Q Consensus        73 ~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~--~~D  150 (225)
                      +.+++|.||+++..+++++.+.+..+|.||+.|++.||+.++.|+||+|+++.|+|.+.++..+||+++|+++|+  ++|
T Consensus        80 d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peid  159 (218)
T KOG1655|consen   80 DSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDID  159 (218)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999886  689


Q ss_pred             HHHHHHHHHHHHHHHhhhc---CCCCCCCC
Q 027325          151 EEEILAEFDNLEAQLAVQE---MPEVPTEG  177 (225)
Q Consensus       151 edELe~EL~~L~~e~~~~~---~~~vp~~~  177 (225)
                      +++|++||++|.+|.....   --..|+|+
T Consensus       160 e~dL~aELdaL~~E~d~~~~~~~~~~psyl  189 (218)
T KOG1655|consen  160 EADLDAELDALGQELDMLEEDENYLMPSYL  189 (218)
T ss_pred             HHHHHHHHHHHHhHhhcccccccccchhhh
Confidence            9999999999977643221   12367775

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.96  E-value=3.4e-30  Score=210.39  Aligned_cols=167  Identities=35%  Similarity=0.517  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQ   95 (225)
Q Consensus        16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n   95 (225)
                      .+|++|+.+++.|.+++.+|+.+|..+...|++++++|++..|+.|||++|.++++++++.+++.+|++++.+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHhhhcCCC
Q 027325           96 KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQLAVQEMPE  172 (225)
Q Consensus        96 ~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~---~~~DedELe~EL~~L~~e~~~~~~~~  172 (225)
                      ..|+.+|+.|+++|+++++.|++++|+++|++|.+.++.+++|+++|++.+   +++|++||++||++|..+...+..  
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~--  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEE--  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS---
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhh--
Confidence            999999999999999999999999999999999999999999999999987   468999999999999988654432  


Q ss_pred             CCCCCCCcccccCCCCCCCCCC
Q 027325          173 VPTEGPSEEQEKLDLPNVPTKV  194 (225)
Q Consensus       173 vp~~~~~~~~~~~~lP~vp~~~  194 (225)
                       +         ...||+||+++
T Consensus       159 -~---------~~~lp~~P~~~  170 (171)
T PF03357_consen  159 -E---------KQQLPSVPSTE  170 (171)
T ss_dssp             -----------SS-SS---HH-
T ss_pred             -c---------cccCCcCCCCC
Confidence             1         12688888753

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=6.7e-27  Score=212.62  Aligned_cols=159  Identities=28%  Similarity=0.391  Sum_probs=151.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            9 PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLAD   88 (225)
Q Consensus         9 ~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~   88 (225)
                      .+||+.|.+|++|+.++..|.++++.|+++|+++...++.+++.|.|+.|+++||+||+.|+.++++..++.||++++.+
T Consensus       226 ~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~  305 (439)
T KOG2911|consen  226 SIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQ  305 (439)
T ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C--CCCHHHHHHHHHHHHHH
Q 027325           89 IELASKQKAVFESLKSGTNAIKAIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKL-S--AEDEEEILAEFDNLEAQ  164 (225)
Q Consensus        89 iE~a~~n~~vv~alk~~~~aLK~i~~~-~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~-~--~~DedELe~EL~~L~~e  164 (225)
                      |.+|++|+.|+.||+.|+.|||.+++. .+.|+|+++||++.|.++.++||+++|+.+. +  +++|++||+||+.|+.+
T Consensus       306 Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D  385 (439)
T KOG2911|consen  306 IDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEAD  385 (439)
T ss_pred             HHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhc
Confidence            999999999999999999999999995 5699999999999999999999999999864 3  68999999999999987


Q ss_pred             Hhh
Q 027325          165 LAV  167 (225)
Q Consensus       165 ~~~  167 (225)
                      ...
T Consensus       386 ~~k  388 (439)
T KOG2911|consen  386 EKK  388 (439)
T ss_pred             ccc
Confidence            544

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=7.5e-15  Score=121.63  Aligned_cols=163  Identities=19%  Similarity=0.285  Sum_probs=126.4

Q ss_pred             CCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHH
Q 027325            1 MGNLFVKKPKITDV-DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKD----RALLALKKKRAQEELLKQV   75 (225)
Q Consensus         1 M~~lFg~k~~ite~-D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~----~A~~~Lr~KK~~e~~L~~~   75 (225)
                      |. +||+++.+-+. -..-..|....+.|+.....|+.+-.++...+|+..++|+-.    .|+.+.|.|.    ++.+.
T Consensus         1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~----~i~kf   75 (224)
T KOG3230|consen    1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRR----YIKKF   75 (224)
T ss_pred             CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----HHHHH
Confidence            55 99998554321 011122333444455555555555555566777888888765    5555665555    55888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCHHHH
Q 027325           76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEI  154 (225)
Q Consensus        76 ~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-~DedEL  154 (225)
                      .+...+|+.+...|...+++..+..+|+.++++|..+|+.|++..+.++|.+|+.+.+.++...++|+..+++ .++++-
T Consensus        76 ~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~ed  155 (224)
T KOG3230|consen   76 QNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDED  155 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988764 456667


Q ss_pred             HHHHHHHHHHHhhh
Q 027325          155 LAEFDNLEAQLAVQ  168 (225)
Q Consensus       155 e~EL~~L~~e~~~~  168 (225)
                      |+|-+.|..+++++
T Consensus       156 EEEtd~lvnqVLDE  169 (224)
T KOG3230|consen  156 EEETDDLVNQVLDE  169 (224)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88999999888775

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=8.3e-13  Score=110.36  Aligned_cols=173  Identities=18%  Similarity=0.229  Sum_probs=147.3

Q ss_pred             CCCCCCCCC--hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            4 LFVKKPKIT--DVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI   80 (225)
Q Consensus         4 lFg~k~~it--e~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~   80 (225)
                      +||+.+..+  +.-+- -..|+.....|.+++..|++.-.+....+|+++++|+++.++.+-|.--...+...+++....
T Consensus         3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            899864433  44333 357888888999999999998888889999999999988777666666666666799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---C--CCHHHHH
Q 027325           81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---A--EDEEEIL  155 (225)
Q Consensus        81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~--~DedELe  155 (225)
                      +|..+.+.+..+-....++..|..++++||.+|.-+.+..+..+|.+|.-.+.++.-|.+++...+.   |  .++++.+
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d  162 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD  162 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987663   2  3667788


Q ss_pred             HHHHHHHHHHhhhcCCCCCCC
Q 027325          156 AEFDNLEAQLAVQEMPEVPTE  176 (225)
Q Consensus       156 ~EL~~L~~e~~~~~~~~vp~~  176 (225)
                      .|.+.+..++..+.++.+|..
T Consensus       163 eEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  163 EEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHhccccccCCcc
Confidence            888999999888888877754

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.4e-11  Score=99.94  Aligned_cols=165  Identities=12%  Similarity=0.144  Sum_probs=129.5

Q ss_pred             CCCCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            2 GNLFVKKPKITDVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI   80 (225)
Q Consensus         2 ~~lFg~k~~ite~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~   80 (225)
                      .|+||++ .+.++.+. -..|+.+-+.|+.....++++-.++...+|+....|+.+.++.+-++-..+.+|..+.++...
T Consensus         1 ~niF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~   79 (208)
T KOG3231|consen    1 ANIFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS   79 (208)
T ss_pred             CCcccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            4799988 33333332 235666666666666666666666666778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHHHHHHH
Q 027325           81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE-DEEEILAEFD  159 (225)
Q Consensus        81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~-DedELe~EL~  159 (225)
                      .+..+..+....+.+..+..||....++|+.+|+.|+++++-.+|.+|+-...+++...++|...++++ |...-++|-+
T Consensus        80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~  159 (208)
T KOG3231|consen   80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ  159 (208)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877531 2222234444


Q ss_pred             HHHHHHhh
Q 027325          160 NLEAQLAV  167 (225)
Q Consensus       160 ~L~~e~~~  167 (225)
                      ++..++++
T Consensus       160 aiVNqVLD  167 (208)
T KOG3231|consen  160 AIVNQVLD  167 (208)
T ss_pred             HHHHHHHH
Confidence            55544444

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.5e-06  Score=69.21  Aligned_cols=147  Identities=20%  Similarity=0.280  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL----ALKKKRAQEELLKQVDGWLINVEQQLADI   89 (225)
Q Consensus        14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~----~Lr~KK~~e~~L~~~~~~l~nLe~~~~~i   89 (225)
                      ....+++||-+-..|++.-.+.++.-..+..++|+++.+|+.+.|+.    +.|+|...    -++......+..+...+
T Consensus         7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~----~n~LrlssRvDAVaaRv   82 (203)
T KOG3232|consen    7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEA----VNYLRLSSRVDAVAARV   82 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            45678899999999999999988888888899999999999988775    45555433    34455566788888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHH
Q 027325           90 ELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQ  164 (225)
Q Consensus        90 E~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-----~~DedELe~EL~~L~~e  164 (225)
                      .+|-+...|...|...-+.|-+..+.|++++|-.+||.|..+-+..+--...+...++     ..+.+++    +.|.++
T Consensus        83 qTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~V----d~Lmq~  158 (203)
T KOG3232|consen   83 QTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDV----DSLMQQ  158 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHH----HHHHHH
Confidence            9999999999999999999999999999999999999999999987655555543332     3444443    445555


Q ss_pred             Hhhh
Q 027325          165 LAVQ  168 (225)
Q Consensus       165 ~~~~  168 (225)
                      +.++
T Consensus       159 vADe  162 (203)
T KOG3232|consen  159 VADE  162 (203)
T ss_pred             HHHH
Confidence            5444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=98.50  E-value=2.3e-05  Score=66.90  Aligned_cols=148  Identities=17%  Similarity=0.212  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027325           13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQ--------   84 (225)
Q Consensus        13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~--------   84 (225)
                      ....++.........|++++..++..+......|..++..|+-+.|+.+|.+|..++.++..+..++..+..        
T Consensus        41 ~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~  120 (221)
T PF04012_consen   41 KARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ  120 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666778889999999999999999999999999999999999999999988877666654444        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 027325           85 ---QLADIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEF  158 (225)
Q Consensus        85 ---~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL  158 (225)
                         +-.+|...+....++.+-..+.++-++++..   +++......++.|.+.++..+--.++.....+  +...++.+|
T Consensus       121 l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~--~~~~~e~~l  198 (221)
T PF04012_consen  121 LEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD--SDQDLEAEL  198 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccHHHHH
Confidence               4445566777888888888888888887764   45677777777777777776666666654322  222266777


Q ss_pred             HHHH
Q 027325          159 DNLE  162 (225)
Q Consensus       159 ~~L~  162 (225)
                      +++.
T Consensus       199 ~~~~  202 (221)
T PF04012_consen  199 EELE  202 (221)
T ss_pred             HHhc
Confidence            7665

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=98.39  E-value=0.0002  Score=61.69  Aligned_cols=150  Identities=13%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q 027325           16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINV-----------EQ   84 (225)
Q Consensus        16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL-----------e~   84 (225)
                      .++..+......++++...++..+......|+.++.+|+-+.|+.+|.+|+.+...+..+..++...           ..
T Consensus        45 ~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~  124 (222)
T PRK10698         45 STSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGE  124 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444556778888888999999999999999999999999999999999988877666555444           44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHhccc----CC----C-CCHH
Q 027325           85 QLADIELASKQKAVFESLKSGTNAIKAIQSEIN---LEDVQKLMDDTEEAKAYQDEINAILGEK----LS----A-EDEE  152 (225)
Q Consensus        85 ~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~---id~Ve~lmde~~e~~e~~~EI~e~Ls~~----~~----~-~Ded  152 (225)
                      +-.+|+.++....++.|=..+..+.++++..++   .+.--.-++.|.+-++..+--.++++.+    ++    . ..++
T Consensus       125 L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~  204 (222)
T PRK10698        125 LENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADD  204 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccc
Confidence            445567888899999999999999999888654   3333344455666666655555554321    11    0 1234


Q ss_pred             HHHHHHHHHHHHH
Q 027325          153 EILAEFDNLEAQL  165 (225)
Q Consensus       153 ELe~EL~~L~~e~  165 (225)
                      ++++||.+|-..+
T Consensus       205 ~ve~ELa~LK~~~  217 (222)
T PRK10698        205 EISEQLAALKAKM  217 (222)
T ss_pred             hHHHHHHHHHHHh
Confidence            5777777776654

>TIGR02977 phageshock_pspA phage shock protein A

Probab=98.25  E-value=0.00053  Score=58.81  Aligned_cols=127  Identities=14%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027325           16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLA--------   87 (225)
Q Consensus        16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~--------   87 (225)
                      .++..+......+++++..+...+......|+.++..|+-+.|+.+|.+|+.++.+...+..++..+...+.        
T Consensus        45 ~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~  124 (219)
T TIGR02977        45 TTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAK  124 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455668888888999999999999999999999999999999999999998777766655554443        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027325           88 ---DIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAIL  142 (225)
Q Consensus        88 ---~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~L  142 (225)
                         +|+.++....++.|=..+..+.+.++..   ++.+.--..++.|.+.++..+--.++.
T Consensus       125 L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~  185 (219)
T TIGR02977       125 LQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY  185 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence               3455666666666656677776666654   455555555555555555544444444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PTZ00464 SNF-7-like protein; Provisional

Probab=98.14  E-value=0.00045  Score=59.14  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDR--ALLALKKK-RAQEELLKQVDGWLINVEQQLADIELASKQK   96 (225)
Q Consensus        20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~--A~~~Lr~K-K~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~   96 (225)
                      .++.++..|..+...|+++|.++......|-+.-.+.+  +....|+| +.+-+..-.+.+++.++.+.+++++...+..
T Consensus        15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i   94 (211)
T PTZ00464         15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT   94 (211)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777654444333321111110  01111211 1222344455677777888888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHccCC
Q 027325           97 AVFESLKSGTNAIKAIQSEIN  117 (225)
Q Consensus        97 ~vv~alk~~~~aLK~i~~~~~  117 (225)
                      +....=...-.+|+.-++.+.
T Consensus        95 e~a~~~~~vv~amk~g~kaLK  115 (211)
T PTZ00464         95 ESVKDTKVQVDAMKQAAKTLK  115 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777766666677776666554

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.99  E-value=0.0021  Score=55.57  Aligned_cols=144  Identities=16%  Similarity=0.170  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 027325           19 LSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQ-----------QLA   87 (225)
Q Consensus        19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~-----------~~~   87 (225)
                      .++......++++...+...+.+....|+.++..|+-..|+.+|.++..|++++..+..++..+..           +-.
T Consensus        48 A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~  127 (225)
T COG1842          48 AQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ  127 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344557777777778888888899999999999999999999999999988777665554444           344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 027325           88 DIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEA  163 (225)
Q Consensus        88 ~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~  163 (225)
                      +|...+..+.++.+=..+.++-.++++.   ++.+.--..++.|++-++..+.-.++.+.- .....++++.|+.++..
T Consensus       128 Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el-~~~~~~dl~~e~a~~~~  205 (225)
T COG1842         128 KIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAEL-AEGSGDDLDKEFAQAGA  205 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHh-hccCcccHHHHHHHhcc
Confidence            4567778888888888887777777764   455566666667777666666666666531 01133445666666553

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0072  Score=50.88  Aligned_cols=150  Identities=21%  Similarity=0.323  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEK---------QAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVE   83 (225)
Q Consensus        13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~---------~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe   83 (225)
                      ..++++..|...+..|+.+.++|-..|.+.-         -.||.++      +-+++   .+.+.....++.+....++
T Consensus        20 al~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLv------RtR~~---i~kf~~~kaqiqaVSl~iQ   90 (224)
T KOG3230|consen   20 ALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLV------RTRRY---IKKFQNMKAQIQAVSLRIQ   90 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999998888886543         2233333      22333   2334456678888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 027325           84 QQLADIELASKQKAVFESLKSGTNAIK--AIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDN  160 (225)
Q Consensus        84 ~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~-~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~  160 (225)
                      ++..+-..++.-+-+.+||..-|+.|.  ++.+- +.+++--.+||--.|.+.  +-|+++|+   ++.||+|-++=..+
T Consensus        91 tlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~---~~edEEEtd~lvnq  165 (224)
T KOG3230|consen   91 TLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALG---DDEDEEETDDLVNQ  165 (224)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc---ccchhHHHHHHHHH
Confidence            999999999999999999999998876  44443 357787888876666443  34556655   25677777776677


Q ss_pred             HHHHHhh---hcCCCCCCC
Q 027325          161 LEAQLAV---QEMPEVPTE  176 (225)
Q Consensus       161 L~~e~~~---~~~~~vp~~  176 (225)
                      ...|+..   .++.+.|+.
T Consensus       166 VLDEiGvdl~~qL~~~P~~  184 (224)
T KOG3230|consen  166 VLDEIGVDLASQLSSLPSA  184 (224)
T ss_pred             HHHHHcccHHHHhccCccc
Confidence            7766642   345666663

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.0042  Score=52.24  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDL---IRQKRKDRALLALKKKRAQ-EELLKQVDGWLINVEQQLADIELASKQ   95 (225)
Q Consensus        20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~---~k~~~k~~A~~~Lr~KK~~-e~~L~~~~~~l~nLe~~~~~iE~a~~n   95 (225)
                      .|..+++.+.++...++.+|.++.....+|   +++-+-.-|+.+||+|.+- -+|.-...+|..+|.++.+.++.|...
T Consensus        16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            577889999999999999999999888766   3332334689999988763 477788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHH
Q 027325           96 KAVFESLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEIL  155 (225)
Q Consensus        96 ~~vv~alk~~~~aLK~i~~~~~----id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe  155 (225)
                      .+-++--...-.|||.-++.|.    -=+|++ +++++++|++.=+..+=|...++ ..+.-+|+
T Consensus        96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~-IedlQDem~Dlmd~a~EiQE~Lgr~y~~peid  159 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDK-IEDLQDEMEDLMDQADEIQEVLGRNYNTPDID  159 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC
Confidence            9888888888889998888765    334544 35566666665555555555565 45665543

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.23  E-value=0.00058  Score=55.29  Aligned_cols=153  Identities=20%  Similarity=0.324  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQ-----AARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLAD   88 (225)
Q Consensus        14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~-----~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~   88 (225)
                      ...++..|...+..|+++++.+..++..+..     .|+.|++     ..+.+=+....+..++.++...+.+|+.....
T Consensus         6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk-----~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    6 LKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLK-----RKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777888888888887777765543     2333332     12222223333445556667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCHHHHHHHHHHHHH
Q 027325           89 IELASKQKAVFESLKSGTNAIKAIQSEIN--LEDVQKLMDDTEEAKAYQDEINAILG--EKLS-AEDEEEILAEFDNLEA  163 (225)
Q Consensus        89 iE~a~~n~~vv~alk~~~~aLK~i~~~~~--id~Ve~lmde~~e~~e~~~EI~e~Ls--~~~~-~~DedELe~EL~~L~~  163 (225)
                      ......=.....+|+..++.+. + ..+.  ++++.+.++.+.+   .++-+++.++  ...+ +.=+.||++=+.....
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~-~-~~v~~~~d~~~e~~e~~~e---i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~  155 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQIN-L-DKVEKLMDDFQEEMEDQDE---ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE  155 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTT-S-CCHHHHHHHHHHHHHHHTS-------------------TTSTTCHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-h-hhHHHHHHHHHHHHHHHHH---HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence            7766666677777776665553 1 1121  3444444444443   3444444441  3333 2223344433333333


Q ss_pred             HH-hhhcCCCCCCC
Q 027325          164 QL-AVQEMPEVPTE  176 (225)
Q Consensus       164 e~-~~~~~~~vp~~  176 (225)
                      +. ....+|.||+.
T Consensus       156 ~~~~~~~lp~~P~~  169 (171)
T PF03357_consen  156 EEEEKQQLPSVPST  169 (171)
T ss_dssp             TS--SS-SS---HH
T ss_pred             hhhccccCCcCCCC
Confidence            22 24567777753

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.17  Score=42.97  Aligned_cols=136  Identities=16%  Similarity=0.278  Sum_probs=82.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCC-HHHH
Q 027325           45 AARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIK--AIQSEIN-LEDV  121 (225)
Q Consensus        45 ~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~~~-id~V  121 (225)
                      .|.+|++.     =+.+=+.--.+..-+.++..|+..|++.-...|...+-..-.+|||..-..|-  +++.-|+ |.+-
T Consensus        62 ~AlqaLkr-----KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQ  136 (221)
T KOG1656|consen   62 MALQALKR-----KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQ  136 (221)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            44555542     23344455567788888888888999888888888888888888888877765  4444443 4444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--ccCCCCCHHHHHHHHH--HHHHHHhhh-----cCCCCCCCCCCcccccCCCCCCCC
Q 027325          122 QKLMDDTEEAKAYQDEINAILG--EKLSAEDEEEILAEFD--NLEAQLAVQ-----EMPEVPTEGPSEEQEKLDLPNVPT  192 (225)
Q Consensus       122 e~lmde~~e~~e~~~EI~e~Ls--~~~~~~DedELe~EL~--~L~~e~~~~-----~~~~vp~~~~~~~~~~~~lP~vp~  192 (225)
                      ..++++|      ++-|+.=++  ..+++.+=..=.+||+  .|..++...     .+|+||+.         .||+.|.
T Consensus       137 qe~a~eI------seAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~---------~lPa~~~  201 (221)
T KOG1656|consen  137 QEVAEEI------SEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSI---------ALPAKPA  201 (221)
T ss_pred             HHHHHHH------HHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc---------ccCcccc
Confidence            4444444      445666554  3466432222234444  445555443     25666654         6888876


Q ss_pred             CCCCCccc
Q 027325          193 KVPVASRV  200 (225)
Q Consensus       193 ~~p~~~~~  200 (225)
                      +.|.....
T Consensus       202 ~~~~a~E~  209 (221)
T KOG1656|consen  202 SRPKAEED  209 (221)
T ss_pred             cCCCcchh
Confidence            66655443

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=95.53  E-value=1.3  Score=37.46  Aligned_cols=45  Identities=13%  Similarity=-0.017  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           65 KRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAI  109 (225)
Q Consensus        65 KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aL  109 (225)
                      .-.+..++.++..++++|+......+....-..-..||+..++-|
T Consensus        83 l~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~  127 (191)
T PTZ00446         83 IENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEI  127 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334445555555555555555555555555555555555555444

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=95.17  E-value=1.8  Score=36.98  Aligned_cols=61  Identities=8%  Similarity=0.066  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH
Q 027325           74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAY  134 (225)
Q Consensus        74 ~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~-id~Ve~lmde~~e~~e~  134 (225)
                      ++..+...|+..+..+.+.......--+|.....-+......++ ++.|.++++.+.-+...
T Consensus        46 ~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~  107 (204)
T COG5491          46 KLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLA  107 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333333344444444444444444 55666666555544433

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=94.02  E-value=3.3  Score=34.99  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHH
Q 027325           18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQE--ELLKQ---VDGWLINVEQQLADIELA   92 (225)
Q Consensus        18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e--~~L~~---~~~~l~nLe~~~~~iE~a   92 (225)
                      |-.-...+-.|..+.++|.+=..+..    + +-...+..|+.|+|..+--.  -.|-+   ...-+.+..+.+..||+.
T Consensus        11 Itd~DrAIL~lK~QRdkl~qyqkR~e----~-~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm   85 (209)
T KOG2910|consen   11 ITDQDRAILSLKTQRDKLKQYQKRLE----K-QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM   85 (209)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666555543332211    1 12345778999998433211  11222   134566777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Q 027325           93 SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLM  125 (225)
Q Consensus        93 ~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lm  125 (225)
                      .++.++...-+..-.-||.=|..+.  +++..|
T Consensus        86 vsdiEft~vqk~V~~gLk~GN~~lk--kl~~~~  116 (209)
T KOG2910|consen   86 VSDIEFTQVQKKVMEGLKQGNEALK--KLQQEF  116 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence            7777777666666666665544443  555544

>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae

Probab=92.34  E-value=3.7  Score=33.21  Aligned_cols=27  Identities=33%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027325          117 NLEDVQKLMDDTEEAKAYQDEINAILG  143 (225)
Q Consensus       117 ~id~Ve~lmde~~e~~e~~~EI~e~Ls  143 (225)
                      .++.++++.|.+.|..+..+..-+.++
T Consensus        87 kv~~~E~L~d~v~eLkeel~~el~~l~  113 (146)
T PF05852_consen   87 KVEDLEKLTDRVEELKEELEFELERLQ  113 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            488899999888886655544444443

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.72  E-value=11  Score=35.64  Aligned_cols=125  Identities=23%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             CCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHH
Q 027325           10 KITDVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK---KKRA--QEELLKQVDGWLINVE   83 (225)
Q Consensus        10 ~ite~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr---~KK~--~e~~L~~~~~~l~nLe   83 (225)
                      .++..|-. |-.+...+-.|.+-+.+|.++|+.+.+.++++-     ..|+.++|   ++-.  |-+.+-.+..-+....
T Consensus       219 ~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~-----~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~  293 (439)
T KOG2911|consen  219 QIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSK-----EKLRQALKEGKKQIAITYLRARKLLEKDLERKV  293 (439)
T ss_pred             cCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence            34444444 678888899999999999999999988888773     44555555   3222  3334444555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Q 027325           84 QQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD---DTEEAKAYQDEINAILGE  144 (225)
Q Consensus        84 ~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmd---e~~e~~e~~~EI~e~Ls~  144 (225)
                      ..+.++++..++......=+..-.|+|.     +.+-+..++-   -....-+..++|.+.+.+
T Consensus       294 ~~l~~l~~vl~~Id~s~~nkvvl~Ayks-----Gs~alK~il~~~~s~ekVed~Ldev~et~d~  352 (439)
T KOG2911|consen  294 SSLNNLETVLSQIDNSQTNKVVLQAYKS-----GSEALKAILAQGGSTEKVEDVLDEVNETLDR  352 (439)
T ss_pred             HHHHHHHHHHHHHHhhcccHHHHHHHHH-----hHHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence            6666666666665555444444444443     2233334443   111122345666666654

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.13  E-value=9  Score=32.81  Aligned_cols=145  Identities=19%  Similarity=0.283  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIELASKQK   96 (225)
Q Consensus        20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~a~~n~   96 (225)
                      +|..++..|+...++.++.|.   ..||+.-...-+-.|+.+.+.+|.+-...   .++.+-...|..++..+-.+.+-.
T Consensus        29 ~ldrqir~iqree~kv~~~iK---~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lq  105 (227)
T KOG3229|consen   29 QLDRQIRDIQREEEKVQKSIK---QAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQ  105 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHH
Confidence            344444444444444444443   23444433344556666666666554433   455666677777776665554443


Q ss_pred             HHHHHHHHHH---------HHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHh
Q 027325           97 AVFESLKSGT---------NAIKAIQSEI-NLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLA  166 (225)
Q Consensus        97 ~vv~alk~~~---------~aLK~i~~~~-~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~~  166 (225)
                      .....|+..+         .+|..+.++| ..-=|+.+.|+.-+..+..+|+.+-        -++|++.=|-++..+..
T Consensus       106 kStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe--------~deEVdkIL~~it~~~~  177 (227)
T KOG3229|consen  106 KSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEE--------ADEEVDKILTEITGEKA  177 (227)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH--------HHHHHHHHHHHHhcccc
Confidence            3334444333         3455555554 3445667777777766666664433        34567777777766643


Q ss_pred             hhcCCCCCCC
Q 027325          167 VQEMPEVPTE  176 (225)
Q Consensus       167 ~~~~~~vp~~  176 (225)
                       ...|.+|..
T Consensus       178 -~~~p~a~~~  186 (227)
T KOG3229|consen  178 -GEAPLAVTA  186 (227)
T ss_pred             -ccCCcchHH
Confidence             344666654

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.71  E-value=7.5  Score=32.24  Aligned_cols=152  Identities=13%  Similarity=0.224  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027325           16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAA-RDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIEL   91 (225)
Q Consensus        16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a-k~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~   91 (225)
                      .+-..|..-+..++++.+.|+..|.+.-... ..++    +-.|+++..-||.-....   .++.+...+=.-+-..+..
T Consensus        22 kt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAc----r~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km   97 (208)
T KOG3231|consen   22 KTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDAC----RVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKM   97 (208)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            3445677888899999999999998654333 2223    556666555444433322   2333222222223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHhhh
Q 027325           92 ASKQKAVFESLKSGTNAIK--AIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQLAVQ  168 (225)
Q Consensus        92 a~~n~~vv~alk~~~~aLK--~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe~EL~~L~~e~~~~  168 (225)
                      +..---++++|+.-|+.|.  ++...|--=.....--++-|     +.|++.|..-++ .-|++|-.+=.++...|+.-+
T Consensus        98 ~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTe-----EMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIE  172 (208)
T KOG3231|consen   98 AGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTE-----EMINDTLDDILDGSGDEEESQAIVNQVLDEIGIE  172 (208)
T ss_pred             HHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHH-----HHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Confidence            3333344455555454432  11111100001111111111     223444443333 236666666666666666543


Q ss_pred             ---cCCCCCCC
Q 027325          169 ---EMPEVPTE  176 (225)
Q Consensus       169 ---~~~~vp~~  176 (225)
                         .+..+|+.
T Consensus       173 isgKma~~P~a  183 (208)
T KOG3231|consen  173 ISGKMAKAPSA  183 (208)
T ss_pred             hcchhccCCcc
Confidence               45666764

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=90.13  E-value=11  Score=32.19  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           21 LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE  100 (225)
Q Consensus        21 Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~  100 (225)
                      +..+..++....+...+.........+.... ..+..|..+++-++    +..+++..+..|+.+...+........+..
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~-~~~~l~~~~~~~~~----~~srL~~~~sRLqs~~~~~~e~~~m~~v~~   79 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAP-NRRRLAEELYKLRK----ARSRLDASISRLQSLDTMLFEKVVMRQVSG   79 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchh-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444444444444433333332221 22334555555444    458899999999999999988888999999


Q ss_pred             HHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHH
Q 027325          101 SLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQL  165 (225)
Q Consensus       101 alk~~~~aLK~i~~~~~----id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedELe~EL~~L~~e~  165 (225)
                      .|..++..|..+..-..    ++.+...|+-.+-   ..+.+.+.+....+   ..+.+++++++..+..|.
T Consensus        80 ~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~---~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi  148 (204)
T COG5491          80 DMAKAAMYMNELESIRRIMQLFETQFLALELVQL---RLETMDELMDVVVGDPVLEDLEELDELVNKVLPEI  148 (204)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCccchhhhhHHHHHHHHHhhchhh
Confidence            99999999886655333    2222222222222   33455555555444   124444555555444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.79  E-value=4.6  Score=39.38  Aligned_cols=105  Identities=16%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHH
Q 027325           57 RALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-----LEDVQKLMDDTEEA  131 (225)
Q Consensus        57 ~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~-----id~Ve~lmde~~e~  131 (225)
                      .=+.+|-.+..|-.-+..+..++.+++......+....+-+.+.|    ...+.++...++     +++|=.+..+++..
T Consensus       152 ~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A----~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~  227 (569)
T PRK04778        152 LRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA----REILDQLEEELAALEQIMEEIPELLKELQTE  227 (569)
T ss_pred             HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556566667777777777777766666555443333    233333322221     22333333333332


Q ss_pred             H-HHHHHHHH----HhcccCCCCCHHHHHHHHHHHHHHHh
Q 027325          132 K-AYQDEINA----ILGEKLSAEDEEEILAEFDNLEAQLA  166 (225)
Q Consensus       132 ~-e~~~EI~e----~Ls~~~~~~DedELe~EL~~L~~e~~  166 (225)
                      . +..+++.+    |...+| .++..+++.++..|..++.
T Consensus       228 ~P~ql~el~~gy~~m~~~gy-~~~~~~i~~~i~~l~~~i~  266 (569)
T PRK04778        228 LPDQLQELKAGYRELVEEGY-HLDHLDIEKEIQDLKEQID  266 (569)
T ss_pred             hhHHHHHHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Confidence            2 23333333    333444 3455567777777766553

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=88.66  E-value=2.5  Score=29.03  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027325           33 QQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD   76 (225)
Q Consensus        33 ~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~   76 (225)
                      +.|+.+...+...|.++-..|+...|+.++|--|.|+..+....
T Consensus         2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~   45 (59)
T smart00685        2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR   45 (59)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence            45777888888888888889999999999999999988776543

3 and human FLJ20241.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=88.49  E-value=26  Score=34.23  Aligned_cols=38  Identities=13%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           58 ALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQ   95 (225)
Q Consensus        58 A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n   95 (225)
                      =+.+|..+..|-..+..+..++.+++......+....+
T Consensus       149 rk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~  186 (560)
T PF06160_consen  149 RKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN  186 (560)
T ss_pred             HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            33455555566666666667777777766666655554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=87.02  E-value=7.3  Score=27.44  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 027325           26 RKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV   75 (225)
Q Consensus        26 ~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~   75 (225)
                      ..|..-...+..++..+......+...++...|+.++++-+++.+.++.+
T Consensus        27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i   76 (78)
T PF07743_consen   27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            45666667777777778888888888899999999999999998877665

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>PRK14162 heat shock protein GrpE; Provisional

Probab=86.49  E-value=13  Score=31.53  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLADIELA   92 (225)
Q Consensus        14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~iE~a   92 (225)
                      .+..+..|+..+..|.+++..+..+.-+.......+-    |+.++..-. ++...++.+..+...++||+-.+......
T Consensus        37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r----kR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~  112 (194)
T PRK14162         37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ----NRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADD  112 (194)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc
Confidence            3445556666666666666666555543333332221    222332222 22234455566666666666665443322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325           93 SKQKAVFESLKSGTNAIKAIQSEINLEDV  121 (225)
Q Consensus        93 ~~n~~vv~alk~~~~aLK~i~~~~~id~V  121 (225)
                      .....++.+++..-+.|.++....++..|
T Consensus       113 ~~~~~l~~Gvemi~k~l~~vL~~~GV~~I  141 (194)
T PRK14162        113 EAAKQLKKGVQMTLDHLVKALKDHGVTEI  141 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence            33345666666666666666665554443

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=84.32  E-value=35  Score=31.72  Aligned_cols=41  Identities=7%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 027325           93 SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA  133 (225)
Q Consensus        93 ~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e  133 (225)
                      +.-.+++..|......+.....-.+++.|..+...+.....
T Consensus       131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~  171 (383)
T PF04100_consen  131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQN  171 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence            33467777777777777666666678888877777766444

>PRK14143 heat shock protein GrpE; Provisional

Probab=81.42  E-value=35  Score=29.82  Aligned_cols=100  Identities=10%  Similarity=0.082  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 027325           15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLADIEL-A   92 (225)
Q Consensus        15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~iE~-a   92 (225)
                      +..+..|+..+..|.++++.+..+.-++......+-    |+..+..-. ++...++.+..+.-.+.||+-.+..+.. .
T Consensus        66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~R----KR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~  141 (238)
T PRK14143         66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFR----KRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEG  141 (238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccc
Confidence            334556666666666665555554433333322222    222221111 2233445555555555555555443211 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCH
Q 027325           93 SKQKAVFESLKSGTNAIKAIQSEINL  118 (225)
Q Consensus        93 ~~n~~vv~alk~~~~aLK~i~~~~~i  118 (225)
                      .....+..++...-+.|.++.+..++
T Consensus       142 ~~~~~l~~Gve~i~k~l~~~L~k~GV  167 (238)
T PRK14143        142 EEAQALHRSYQGLYKQLVDVLKRLGV  167 (238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            11123344444444444444444443

>PRK14146 heat shock protein GrpE; Provisional

Probab=81.36  E-value=25  Score=30.24  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325           68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDV  121 (225)
Q Consensus        68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~V  121 (225)
                      .++.+..+...++||+-.+...........++.+++..-+.|.++.+..++..|
T Consensus       103 ~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i  156 (215)
T PRK14146        103 VKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKEFYSVLEKSNVIRF  156 (215)
T ss_pred             HHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHCcCeee
Confidence            445555555666666655443222222244556666666666666555554433

>PRK14140 heat shock protein GrpE; Provisional

Probab=80.75  E-value=32  Score=29.04  Aligned_cols=18  Identities=28%  Similarity=0.211  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 027325           69 EELLKQVDGWLINVEQQL   86 (225)
Q Consensus        69 e~~L~~~~~~l~nLe~~~   86 (225)
                      ++.+..+...++||+-.+
T Consensus        87 ~~~~~~LLpvlDnLerAl  104 (191)
T PRK14140         87 QSLASDLLPALDNFERAL  104 (191)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	6e-07
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	6e-07
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 83/230 (36%)

Query: 15  DRAILS-LKTQRRKLAQ-YQQQLD------VVIEAEKQAARDLIRQKRKDRALLALKKKR 66
              +L  L+    ++   +  + D      + I + +   R L++ K  +  LL      
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------ 248

Query: 67  AQEELLKQV-DGWLINVEQQLADIE----LASKQKAVFESLKSGTNAIKAIQSEINLEDV 121
               +L  V +    N      ++     L ++ K V + L + T       + I+L+  
Sbjct: 249 ----VLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAAT------TTHISLDHH 294

Query: 122 QKLM--DDTEE--AKA----YQD------EIN----AILGEKLSAEDEEEILAEFDN--- 160
              +  D+ +    K      QD        N    +I+ E +      + LA +DN   
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWDNWKH 349

Query: 161 ---------LEAQLAVQEMPEVPTEGPSEEQEKLD----LP---NVPTKV 194
                    +E+ L V E        P+E ++  D     P   ++PT +
Sbjct: 350 VNCDKLTTIIESSLNVLE--------PAEYRKMFDRLSVFPPSAHIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 50/190 (26%)

Query: 18  ILSLKTQRRKL---AQYQQQL----DV----VIEA------------EKQAARDLIRQKR 54
           I S++ + R+L     Y+  L    +V       A             KQ    L     
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 55  KDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASK----QKAVF-ESLKSGTNAI 109
              +L         +E+   +  +L    Q L            + ++  ES++ G    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATW 344

Query: 110 KAIQSEINLEDVQKLMD------DTEEAKAY-------QDEIN------AILGEKLSAED 150
              +  +N + +  +++      +  E +             +      +++   +   D
Sbjct: 345 DNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 151 EEEILAEFDN 160
              ++ +   
Sbjct: 404 VMVVVNKLHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 52/207 (25%)

Query: 10  KITDVDRAILSLKTQRRKLAQ----------YQQQLDVVIEAEKQAA--RDLIRQKRKDR 57
            I      +++ K  +  L +              L++ ++ E + A  R ++       
Sbjct: 399 VIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN--- 454

Query: 58  ALLALKKKRAQEELLK-QVDGW--------LINVEQQLADIELASKQKAVFESLKSGTNA 108
               + K    ++L+   +D +        L N+E      E  +  + VF   +     
Sbjct: 455 ----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----PERMTLFRMVFLDFRFLEQK 506

Query: 109 IKAIQSEINLEDVQKLMDDTEEAKAYQDEI-----------NAILGEKLSAEDEEEILAE 157
           I+             +++  ++ K Y+  I           NAIL + L   +E  I ++
Sbjct: 507 IRH--DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSK 563

Query: 158 FDNLEAQLAVQEMPEVPTEGPSEEQEK 184
           + +L  ++A+        E   EE  K
Sbjct: 564 YTDL-LRIALMA----EDEAIFEEAHK 585

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 27/161 (16%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 21  LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80
           ++ + R + +  + +    E  K++ +D  ++ +KD  ++  K+     + + ++     
Sbjct: 19  IRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA 78

Query: 81  NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINA 140
           ++   L  ++       V  SL+  T  +KA+QS + + ++Q  M +  +       I  
Sbjct: 79  HMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEE 138

Query: 141 ILGEKLSA-----EDEEEILAEFDNLEAQLAVQEMPEVPTE 176
           +L +   +     E EEE   E D +  ++    + + P++
Sbjct: 139 MLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK 179

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Length = 79

 Score = 44.9 bits (106), Expect = 6e-07
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
          AI  L+     L++ Q+ L+  IE E  AA+     K K  AL ALK+K+  E+ L Q+D
Sbjct: 7  AIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQID 65

Query: 77 GWLINVEQQLADIE 90
          G L  +E Q   +E
Sbjct: 66 GTLSTIEFQREALE 79

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 30/190 (15%), Positives = 75/190 (39%), Gaps = 5/190 (2%)

Query: 21  LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80
           ++ + R + +  + +    E  K++ +D  ++ +KD  ++  K+     + + ++     
Sbjct: 19  IRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKA 78

Query: 81  NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINA 140
           ++   L  ++       V  SL+  T  +KA+QS + + ++Q  M +  +       I  
Sbjct: 79  HMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEE 138

Query: 141 ILGEKLSA-----EDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVP 195
           +L +   +     E EEE   E D +  ++    + + P++      E      +     
Sbjct: 139 MLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASED 198

Query: 196 VASRVVADDA 205
                 A +A
Sbjct: 199 EEEEEEALEA 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.81
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.68
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.66
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.64
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	99.06
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	98.64
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	98.24
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	97.9
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.23
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	96.45
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.42

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.81  E-value=8.4e-21  Score=156.72  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=122.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 027325            4 LFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKD----RALLALKKKRAQEELLKQVDGWL   79 (225)
Q Consensus         4 lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~----~A~~~Lr~KK~~e~~L~~~~~~l   79 (225)
                      +|+++.|-.....+...|+.+...|.+++.+|+..-.++...+|+++++|++.    .|+.++|.||+    ..+++...
T Consensus         2 ~~~~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~   77 (179)
T 2gd5_A            2 AMAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASK   77 (179)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            57666444567888999999999999999999999999999999999999875    67888888876    57788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCHHHHHHHH
Q 027325           80 INVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEF  158 (225)
Q Consensus        80 ~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-~DedELe~EL  158 (225)
                      .+|+.+.+.++++.++..|+.+|+.++++|+.+|+.|++++|..+|++|.++++++++|+++|++++++ .|+++.++|.
T Consensus        78 a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~  157 (179)
T 2gd5_A           78 AHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEA  157 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998864 2445555666


Q ss_pred             HHHHHHHhh
Q 027325          159 DNLEAQLAV  167 (225)
Q Consensus       159 ~~L~~e~~~  167 (225)
                      +.+...+.+
T Consensus       158 d~~v~kVl~  166 (179)
T 2gd5_A          158 EMEIDRILF  166 (179)
T ss_dssp             TTHHHHTTC
T ss_pred             HHHHHHHHH
Confidence            666555543

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=112.93  Aligned_cols=77  Identities=36%  Similarity=0.380  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIE   90 (225)
Q Consensus        13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE   90 (225)
                      ....||.+|+.+++.|.+|+++|+.+|+.+...||+++ .++|.+|+.|||+||+||++|++++++++||++++.+||
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999 677889999999999999999999999999999999885

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=133.97  Aligned_cols=159  Identities=18%  Similarity=0.249  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKA   97 (225)
Q Consensus        18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~   97 (225)
                      -..|+.+.+.|.+.+.+|+..=.+....+|+++++|+...|+.+.|.--...++..+++....+|+.+.+.+.++.++..
T Consensus        16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~   95 (218)
T 3frt_A           16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR   95 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888888888888888888999999999998766655555555555668899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CCHHHHHHHHHHHHHHHhhhcCCC
Q 027325           98 VFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-----EDEEEILAEFDNLEAQLAVQEMPE  172 (225)
Q Consensus        98 vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-----~DedELe~EL~~L~~e~~~~~~~~  172 (225)
                      |..+|+.++++|+.+|+.|++++|..+|++|..++++++-+.+++...+++     .+++|.+.+.+++..|+....++.
T Consensus        96 v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~  175 (218)
T 3frt_A           96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGK  175 (218)
T ss_dssp             ---CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhc
Confidence            999999999999999999999999999999999999998888888877652     245566777777777776666777


Q ss_pred             CCCC
Q 027325          173 VPTE  176 (225)
Q Consensus       173 vp~~  176 (225)
                      +|+.
T Consensus       176 ~p~~  179 (218)
T 3frt_A          176 APSK  179 (218)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7753

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.64  E-value=6.9e-16  Score=116.37  Aligned_cols=75  Identities=25%  Similarity=0.519  Sum_probs=64.0

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCC
Q 027325          114 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNV  190 (225)
Q Consensus       114 ~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~v  190 (225)
                      ++|+||+|+++||+++|++++++||+++|+++++   ++|++||++||++|+.+.....+..++...      .+.||+|
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~------~~~LP~v   74 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPE------TVPLPNV   74 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC------CCCCCCC
Confidence            3689999999999999999999999999999873   689999999999999998888776655321      2469999


Q ss_pred             CCCC
Q 027325          191 PTKV  194 (225)
Q Consensus       191 p~~~  194 (225)
                      |++.
T Consensus        75 P~~~   78 (104)
T 3um3_B           75 PSIA   78 (104)
T ss_pred             CCCc
Confidence            9765

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=3.5e-11  Score=80.82  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHHH
Q 027325          116 INLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQL  165 (225)
Q Consensus       116 ~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-----~~DedELe~EL~~L~~e~  165 (225)
                      |+|++|++++|+|.+.++.++||+++||++|+     ++|+++|++||++|..+.
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~   55 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED   55 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence            57999999999999999999999999999864     489999999999999873

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=98.64  E-value=4.3e-09  Score=70.35  Aligned_cols=54  Identities=26%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCC
Q 027325          132 KAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPT  192 (225)
Q Consensus       132 ~e~~~EI~e~Ls~~~~--~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~  192 (225)
                      ++.++||+++|+++++  ++||+||++||++|+++...   ..+|+|+.+    .+..|++|+
T Consensus         1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~---~~~~syL~~----~~~ap~~p~   56 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLA---DEDSSYLDE----AASAPAIPE   56 (57)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHHH---CSCCHHHHH----HHHC-----
T ss_pred             CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhh---cccchHHHH----hhhccCCCC
Confidence            4678999999999875  69999999999999988643   467888632    235788885

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=98.24  E-value=1.7e-06  Score=53.61  Aligned_cols=38  Identities=42%  Similarity=0.650  Sum_probs=32.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325            8 KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQA   45 (225)
Q Consensus         8 k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~   45 (225)
                      +++||+.|+||++||.++++|..|+++++..++.+...
T Consensus         1 ~skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~ei   38 (39)
T 3htu_B            1 GSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERAL   38 (39)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence            37899999999999999999999999999999876544

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=97.90  E-value=1.3e-05  Score=55.32  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCCCCCCCcc
Q 027325          148 AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR  199 (225)
Q Consensus       148 ~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~~~p~~~~  199 (225)
                      ++||+||++||++|..++..   ..+|+|+++    ...+|.+|++.|..+.
T Consensus         7 diDE~eL~aELdaL~~e~~~---~~~pSyL~~----~~~~P~~p~~~p~~~~   51 (69)
T 3uly_B            7 ELDEDDLEAELDALGDELLA---DEDSSYLDE----AASAPAIPEGVPTDTK   51 (69)
T ss_pred             CCCHHHHHHHHHHHHHHHhc---ccCcchhhc----cccCCCCCCCCCCccc
Confidence            69999999999999988643   347999864    3579999998885543

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.23  E-value=0.00021  Score=58.29  Aligned_cols=149  Identities=17%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEK---------QAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVE   83 (225)
Q Consensus        13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~---------~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe   83 (225)
                      ....++..|...+..|+++.+++...|.+..         -.|+.+++..         |....|-....++.+....|+
T Consensus        18 ~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~r---------k~~~~l~~~~a~l~~v~~~lq   88 (179)
T 2gd5_A           18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR---------KAVSKLYASKAHMNSVLMGMK   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888999999999988888886543         2344455332         123333335567777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHHHHHHH
Q 027325           84 QQLADIELASKQKAVFESLKSGTNAIK--AIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDN  160 (225)
Q Consensus        84 ~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe~EL~~  160 (225)
                      ++......+..-..+..+|+..++.|+  .+.+-  .+++++   ++...-...+.++++|...++ +.++++.++|+++
T Consensus        89 t~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~--M~e~~~---e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~k  163 (179)
T 2gd5_A           89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT--MRELSK---EMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR  163 (179)
T ss_dssp             HHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHH--HHHHHH---HHHHHTSCC-------------------CTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence            887777777777778888888888773  22222  334444   444444456666777776554 4678888999999


Q ss_pred             HHHHHhhhcCCCCCC
Q 027325          161 LEAQLAVQEMPEVPT  175 (225)
Q Consensus       161 L~~e~~~~~~~~vp~  175 (225)
                      +..|...+.+|.+|+
T Consensus       164 Vl~E~~~~~l~~~P~  178 (179)
T 2gd5_A          164 ILFEITAGALGKAPS  178 (179)
T ss_dssp             TTCCC----------
T ss_pred             HHHHhhHhhcccCCC
Confidence            988877655555553

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=96.45  E-value=0.0052  Score=51.65  Aligned_cols=92  Identities=15%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027325           15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIEL   91 (225)
Q Consensus        15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~   91 (225)
                      .+.+..|...+..|++..+++...|.+   .||+.=..+-|..|+.+.|.||+..+.+   .++.+....|+++.....-
T Consensus        20 r~~~R~LdR~~~kle~eEkk~~~~IKk---aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v   96 (218)
T 3frt_A           20 RKEMRVVDRQIRDIQREEEKVKRSVKD---AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRV   96 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666653   2333222333566666666666655443   3445555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 027325           92 ASKQKAVFESLKSGTNAI  109 (225)
Q Consensus        92 a~~n~~vv~alk~~~~aL  109 (225)
                      +..-..++.+|+..|+.|
T Consensus        97 ~~sM~~st~~M~~~n~~m  114 (218)
T 3frt_A           97 AGSLQKSTEVMKAMQSLV  114 (218)
T ss_dssp             --CCCCCHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            555555555666655555

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.42  E-value=15  Score=30.67  Aligned_cols=28  Identities=25%  Similarity=0.109  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           14 VDRAILSLKTQRRKLAQYQQQLDVVIEA   41 (225)
Q Consensus        14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~   41 (225)
                      .|..|..|+..+..|-..+..|+..+..
T Consensus        16 lD~~i~~l~~~~~~lp~el~~le~~~~~   43 (256)
T 3na7_A           16 LDKEIDSLEPLIREKRKDLDKALNDKEA   43 (256)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4555555555555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1bjta_	760	e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra	0.004

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 19/170 (11%), Positives = 51/170 (30%), Gaps = 11/170 (6%)

Query: 5   FVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKR--------KD 56
           + +K K    +R    ++    ++   +  ++  +    +    +I++          K+
Sbjct: 586 YYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKE 645

Query: 57  RALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAI--KAIQS 114
                        E +  V G   + E + +  E         E L      +    I S
Sbjct: 646 GKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWS 705

Query: 115 EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQ 164
                  QKL+   +E +   + +  +  + +   D +     +     +
Sbjct: 706 LTKER-YQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 754

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	90.5

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=90.50  E-value=1.1  Score=30.48  Aligned_cols=54  Identities=13%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325           27 KLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI   80 (225)
Q Consensus        27 ~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~   80 (225)
                      .|..-...+..++..+....+.++..++...|..++++-|+|.+.+..+.....
T Consensus        37 ~l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e~   90 (95)
T d1fpoa2          37 RLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEE   90 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            466666677788888888888899999999999999999999887777665443