Citrus Sinensis ID: 027342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MDDAIVEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Secondary Structure (PSIPRED)
ccHHHHccccccHHHHHHccccccccccccccEEEEEEccccccccccccEEEEEEcccccccccccccccEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccEEccccHHcccccccccEEEEEEccccccccccccEEEEEEccccccccEEcccccEEEEEEEcccccccEEEEcccccccEEEEEEEEEEEEEcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mddaivegykpteeyeeelrdplvdlslidstELWLIQwpykqmpdfdgkelslelrgngrlgsfedssgkaydivsndfqepdemvflnypsepkivgkisrrvslvhypepkeveelnpdkirqlhvtssgasmpnhrfassgqsswrrnsqstlehssytqssryksfspeggepskhskrrrahepnhstdhslgrhsevtslgssershQEKLKRKGKS
Flexible Loop (DISEMBL)
mddaivegykpteeyeeelrdpLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGrlgsfedssgkAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHypepkeveelnpdkIRQLHVtssgasmpnhrfassgqsswRRNSQStlehssytqssryksfspeggepskhskrrrahepnhstdhslgrhsevtslgssershqeklkrkgks
Low Complexity Region (SEG)
MDDAIVEGYKPTeeyeeeLRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Disordered region (IsUnstruct)
********************DPLVDLSLIDSTELWLIQWPYKQMPDFDGK**********************YDIVSNDF***DEMVFLNYPSEPKIVGKISRRVSLVHY******************************************************************************************************************
Disordered Region (DISOPRED)
******E*YKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFL***S*****GKISRRVSLVHYPE****************************************************************************************************************
Disordered Region (DISEMBL)
MDDAIVEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPN**************************************************************************************
Disordered Region (DISPRO)
*DDAIVEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEEL*********************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDAIVEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
F4KF27	211	Mediator-associated prote	yes	no	0.678	0.720	0.373	5e-13

>sp|F4KF27|MDA2_ARATH Mediator-associated protein 2 OS=Arabidopsis thaliana GN=At5g64680 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 23  LVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSS--------GKAYD 74
           L D  L  S E WLIQ P  Q P+ +   L +E   +G  G F+DS+        G  YD
Sbjct: 19  LDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAKYD 78

Query: 75  IVSNDFQEPDEMVFLNYPS-EPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTSSG 133
           + S  F   D    L  PS E  IVGKI+RRV+LV YPEP E+ +    + +Q  V    
Sbjct: 79  LAS--FHSQDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV---- 132

Query: 134 ASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRA 187
            S+ N    SS +SS   N   +  H S T+SSR KS      E  K  KR+ +
Sbjct: 133 GSVTN----SSKKSS---NLTQSSRHKSGTRSSREKSMFSGFTETPKSPKRKNS 179

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
118485606	231	unknown [Populus trichocarpa]	0.964	0.935	0.524	3e-45
225425286	218	PREDICTED: uncharacterized protein LOC10	0.924	0.949	0.486	6e-45
224057854	231	predicted protein [Populus trichocarpa]	0.964	0.935	0.52	1e-44
147864421	340	hypothetical protein VITISV_024902 [Viti	0.915	0.602	0.482	2e-43
449456619	246	PREDICTED: mediator-associated protein 2	0.959	0.873	0.453	2e-41
255543236	208	conserved hypothetical protein [Ricinus	0.843	0.908	0.5	5e-40
357513323	216	hypothetical protein MTR_8g012410 [Medic	0.843	0.875	0.401	2e-28
242052487	226	hypothetical protein SORBIDRAFT_03g00999	0.718	0.712	0.453	2e-28
356521396	216	PREDICTED: uncharacterized protein LOC10	0.897	0.930	0.420	4e-28
356548678	216	PREDICTED: uncharacterized protein LOC10	0.897	0.930	0.410	3e-27

>gi|118485606|gb|ABK94653.1| unknown [Populus trichocarpa]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 149/225 (66%), Gaps = 9/225 (4%)

Query: 1   MDDAI-VEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGN 59
           MDD   VEGYKP   +EE+ R+PL D+SL DSTELWLIQWP  ++PDF+GKELSL L  +
Sbjct: 1   MDDVEEVEGYKPEPGFEEDSREPLADISLSDSTELWLIQWPINELPDFNGKELSLSLDQD 60

Query: 60  GRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEEL 119
           G LGSFE S GKA+D+VS   Q  D  VFL+   E KIVGKISR+VSLVHYP+PKE+E+ 
Sbjct: 61  GCLGSFEASPGKAFDLVSCSAQGLDATVFLSSELETKIVGKISRQVSLVHYPDPKELEKQ 120

Query: 120 NPD-KIRQLHVTSSGASMPNHRF--ASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGG 176
             + K ++ +  S+G+S+ N      ++  SS  RNSQ +  H++ T SSR+KS   E G
Sbjct: 121 EAEKKSKRSYQMSAGSSLMNSSLHSGTTTPSSKLRNSQLSRGHAASTHSSRHKSSLSEAG 180

Query: 177 EPSKHSKRRRAHEPNHSTDHSL---GR-HSEVTSLGSSERSHQEK 217
           E S +SK+RR H  + STD S    GR HS     GSS  SHQ K
Sbjct: 181 EQS-NSKQRRMHNRSGSTDRSTLDSGRGHSGHAYSGSSGLSHQGK 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425286|ref|XP_002272015.1| PREDICTED: uncharacterized protein LOC100264392 isoform 1 [Vitis vinifera] gi|225425288|ref|XP_002272062.1| PREDICTED: uncharacterized protein LOC100264392 isoform 2 [Vitis vinifera] gi|296085538|emb|CBI29270.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 143/228 (62%), Gaps = 21/228 (9%)

Query: 3   DAIVEG-YKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGR 61
           DA+ E  YKP  E+ E+ +D LVDLS+ DS ELWLIQWP  Q PDFDG+ELSL+L  +G+
Sbjct: 2   DAVSEADYKPPPEFIEDTKDSLVDLSMTDSKELWLIQWPVNQHPDFDGQELSLKLHQDGQ 61

Query: 62  LGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNP 121
           LG FE SSGK Y++VS   Q+PD  VF++ PSE KIVGKISRRVSLVHYPEP E+E  + 
Sbjct: 62  LGKFEGSSGKLYNVVSFASQDPDATVFISSPSESKIVGKISRRVSLVHYPEPDELENQSA 121

Query: 122 DKIRQLHVTSSGASMP--NHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPS 179
           + +R+++  S G+S+   +H +++   S+  RN QS    S+ T SSR+           
Sbjct: 122 NNLRKMYQRSGGSSLTHSSHHYSTPSHSTKLRNPQSVSGRSASTHSSRH----------- 170

Query: 180 KHSKRRRAHEP----NHSTDHSLGRHSEVTSLGSSERSHQEKLKRKGK 223
              KRR A +P    N  T  S   HS VTS GS   SHQ K  +K K
Sbjct: 171 ---KRRHADKPATSINQLTQDSGRGHSTVTSSGSLGLSHQGKSTKKVK 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057854|ref|XP_002299357.1| predicted protein [Populus trichocarpa] gi|222846615|gb|EEE84162.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/225 (52%), Positives = 149/225 (66%), Gaps = 9/225 (4%)

Query: 1   MDDAI-VEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGN 59
           MDD   VEGYKP   +EE+ R+PL D+SL DSTELWLIQWP  ++PDF+GKELSL L  +
Sbjct: 1   MDDVEEVEGYKPEPGFEEDSREPLADISLSDSTELWLIQWPINELPDFNGKELSLSLDQD 60

Query: 60  GRLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEEL 119
           G LGSFE S GK++D+VS   Q  D  VFL+   E KIVGKISR+VSLVHYP+PKE+E+ 
Sbjct: 61  GCLGSFEASPGKSFDLVSCSAQGLDATVFLSSELETKIVGKISRQVSLVHYPDPKELEKQ 120

Query: 120 NPD-KIRQLHVTSSGASMPNHRF--ASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGG 176
             + K ++ +  S+G+S+ N      ++  SS  RNSQ +  H++ T SSR+KS   E G
Sbjct: 121 EAEKKSKRSYQMSAGSSLMNSSLHSGTTTPSSKLRNSQLSRGHAASTHSSRHKSSLSEAG 180

Query: 177 EPSKHSKRRRAHEPNHSTDHSL---GR-HSEVTSLGSSERSHQEK 217
           E S +SK+RR H  + STD S    GR HS     GSS  SHQ K
Sbjct: 181 EQS-NSKQRRMHNRSGSTDRSTLDSGRGHSGHAYSGSSGLSHQGK 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864421|emb|CAN82642.1| hypothetical protein VITISV_024902 [Vitis vinifera]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 141/226 (62%), Gaps = 21/226 (9%)

Query: 3   DAIVEG-YKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGR 61
           DA+ E  YKP  E+ E+ +D LVDLS+ DS ELWLIQWP  Q PDFDG+ELSL+L  +G+
Sbjct: 69  DAVSEABYKPPPEFIEDTKDSLVDLSMTDSKELWLIQWPVNQHPDFDGQELSLKLHQDGQ 128

Query: 62  LGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNP 121
           LG FE SSGK Y++VS   Q+PD  VF++ PSE KIVGKISR VSLVHYPEP E+E  + 
Sbjct: 129 LGKFEGSSGKLYNVVSFAXQDPDATVFISSPSESKIVGKISRCVSLVHYPEPDELENQSA 188

Query: 122 DKIRQLHVTSSGASMP--NHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPS 179
           + +R+++  S G+S+   +H +++   S+  RN QS    S+ T SSR+           
Sbjct: 189 NNLRKMYQRSGGSSLTHSSHHYSTPSHSTKLRNPQSVSGRSASTHSSRH----------- 237

Query: 180 KHSKRRRAHEP----NHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 221
              KRR A +P    N  T  S   HS VTS GS   SHQ K  +K
Sbjct: 238 ---KRRHADKPATSINQLTQDSGRGHSTVTSSGSLGLSHQGKSTKK 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456619|ref|XP_004146046.1| PREDICTED: mediator-associated protein 2-like isoform 1 [Cucumis sativus] gi|449456621|ref|XP_004146047.1| PREDICTED: mediator-associated protein 2-like isoform 2 [Cucumis sativus] gi|449507088|ref|XP_004162930.1| PREDICTED: mediator-associated protein 2-like isoform 1 [Cucumis sativus] gi|449507092|ref|XP_004162931.1| PREDICTED: mediator-associated protein 2-like isoform 2 [Cucumis sativus]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/247 (45%), Positives = 153/247 (61%), Gaps = 32/247 (12%)

Query: 3   DAI--VEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNG 60
           DA+  VEGYKP  E+EE+ R+ L D+SL DS ELWLIQWP  Q PDFDG+E SL+L  +G
Sbjct: 6   DALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPDG 65

Query: 61  RLGSFEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELN 120
            +GSF+ SSGK+YD++S   QEP+  VFL   S+ ++VGKISRR+SLVHYPEP+E+E+  
Sbjct: 66  HMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEKAT 125

Query: 121 PDKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSK 180
              ++ L+  SSG S+ N R     Q++  R   S+   ++ ++SS+ +S   E  EPSK
Sbjct: 126 I-PLKSLYQKSSGISLTNSR-----QTTTSRGPHSSSRRTTSSRSSKPRSSVSEFTEPSK 179

Query: 181 --------------------HSKRRRAHEPNHSTDHSLGR----HSEVTSLGSSERSHQE 216
                                SKR+R HEP+ S DHS       +S VTS GS+ERS + 
Sbjct: 180 TSSVKQELESTESRDHKRKDSSKRKRLHEPSRSIDHSTRDSGHGNSAVTSSGSAERSSEG 239

Query: 217 KLKRKGK 223
           K K++ K
Sbjct: 240 KSKKQKK 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543236|ref|XP_002512681.1| conserved hypothetical protein [Ricinus communis] gi|223548642|gb|EEF50133.1| conserved hypothetical protein [Ricinus communis]

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 134/194 (69%), Gaps = 5/194 (2%)

Query: 6   VEGYKPTEEYEEELRDPLVDLSLIDST-ELWLIQWPYKQMPDFDGKELSLELRGNGRLGS 64
           ++GY+    +EE+ R+PLVDLS  DST ELWLIQWP+ ++PDF+GKE+SL L  +G L +
Sbjct: 1   MDGYRAEAGFEEDSREPLVDLSFTDSTSELWLIQWPHNELPDFNGKEISLNLYTDGCLAT 60

Query: 65  FEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPD-K 123
           FE SSGK YD+VS+  QEPD  VFL+  S+ KIVG +SRRVSLVH+P+PKE+E+   + K
Sbjct: 61  FEGSSGKVYDVVSSAAQEPDATVFLSSASQTKIVGNVSRRVSLVHFPDPKELEKQEAEKK 120

Query: 124 IRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSK 183
            ++++  S+G+S   +  A+  QS+  RNS S   H++ T SSR++S   E GE S   K
Sbjct: 121 SKRMYQMSAGSS---YHSATPTQSTKLRNSYSLRGHAASTHSSRHRSSLSEAGEQSSAKK 177

Query: 184 RRRAHEPNHSTDHS 197
           RR  +E   STD S
Sbjct: 178 RRHKYERTASTDRS 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513323|ref|XP_003626950.1| hypothetical protein MTR_8g012410 [Medicago truncatula] gi|355520972|gb|AET01426.1| hypothetical protein MTR_8g012410 [Medicago truncatula] gi|388512825|gb|AFK44474.1| unknown [Medicago truncatula]

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 124/224 (55%), Gaps = 35/224 (15%)

Query: 9   YKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQ----MPDFDGKELSLELRGNGRLGS 64
           YKP +E+ E   +PLV L+L DSTELWLI+ P       + D +GKELS +L   G L S
Sbjct: 13  YKPNKEFIEYATEPLVGLNLTDSTELWLIKVPNSHDKNLLDDINGKELSFKLNKEGTLAS 72

Query: 65  FEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEEL---NP 121
           FE  SG+ YD +S    EPDE VF++  +E +I GKISRRVS+VHYP+P+ +E++   +P
Sbjct: 73  FEGVSGETYDFLSFASTEPDETVFVSSATESEIAGKISRRVSVVHYPDPRALEKISSTDP 132

Query: 122 DKIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKS----FSPEGGE 177
           ++  Q            +  A++ QS+ RR+      H+S T+SSR KS     S     
Sbjct: 133 NQTLQ------------NSIAAASQSAQRRS------HASATKSSRAKSSISGLSERTTT 174

Query: 178 PSKHSKRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 221
           P +H   RR  +P  S  HS G      S  SS+ S   K KR+
Sbjct: 175 PKRHGVNRRP-QPESSRGHSSG-----VSAVSSDHSDGGKSKRR 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052487|ref|XP_002455389.1| hypothetical protein SORBIDRAFT_03g009990 [Sorghum bicolor] gi|241927364|gb|EES00509.1| hypothetical protein SORBIDRAFT_03g009990 [Sorghum bicolor]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 9   YKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQMP--DFDGKELSLELRGNGRLGSFE 66
           Y+P   +EE   + ++D+S  DSTE WLIQWP  Q+   DF GKELSL+LR +G LGS E
Sbjct: 10  YEPGPAFEEVKEEAMLDISPTDSTEFWLIQWPKDQIDFLDFHGKELSLKLRSDGNLGSLE 69

Query: 67  DSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKIRQ 126
            SSGK+Y++VS   Q+PD  VFL   SE K VGKISRRVSLVHYP+P+E+ + +   +  
Sbjct: 70  SSSGKSYELVSFAAQKPDATVFLPSGSETKPVGKISRRVSLVHYPKPEELAKPSFGSLTP 129

Query: 127 LHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYK 169
               S+G+     RF S+ ++   + S  +L   S   +S++K
Sbjct: 130 SIKKSAGSKKTMSRFTSASKNRSSQGSALSLGQRSAEPTSKHK 172

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521396|ref|XP_003529342.1| PREDICTED: uncharacterized protein LOC100790461 [Glycine max]

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 121/219 (55%), Gaps = 18/219 (8%)

Query: 6   VEGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQ--MPDFDGKELSLELRGNGRLG 63
            EGY P+ EY E+  + L++L+  DSTEL  ++ P     + D  G++L L L  +G+L 
Sbjct: 9   TEGYIPSTEYVEDSNETLINLT--DSTELLFLKLPSSNDFLSDIHGQKLFLTLHNDGKLA 66

Query: 64  SFEDSSGKAYDIVSNDFQEPDEMVFLNYPS-EPKIVGKISRRVSLVHYPEPKEVEELNPD 122
           SFEDSSGK YD VS   QEPDE VF+  PS EPKI GKIS RVS VHYP PKE+E+LN  
Sbjct: 67  SFEDSSGKVYDFVSYSAQEPDETVFV--PSTEPKI-GKISMRVSTVHYPGPKELEKLNST 123

Query: 123 KIRQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHS 182
             +  H  SSG +          QS    +S+ + + SS T++S          EPS  S
Sbjct: 124 NAKHAHGNSSGVTGTTSSRYFPMQSGGAASSKGSRQRSSLTEAS----------EPSSIS 173

Query: 183 KRRRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 221
           KRR A +   +   +   HS   S  S   SH+ K KR+
Sbjct: 174 KRRHASKSKSNLSETSHEHSTGISSMSPNHSHEGKAKRR 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548678|ref|XP_003542727.1| PREDICTED: uncharacterized protein LOC100814011 [Glycine max]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 16/217 (7%)

Query: 7   EGYKPTEEYEEELRDPLVDLSLIDSTELWLIQWPYKQ--MPDFDGKELSLELRGNGRLGS 64
           EGY+P+ EY E+  + L++L+  DSTEL  ++ P     + D  G++L L L  +G+L S
Sbjct: 10  EGYRPSTEYVEDSNETLINLT--DSTELLFLKLPSSNDFLSDIHGQKLFLTLHNDGKLAS 67

Query: 65  FEDSSGKAYDIVSNDFQEPDEMVFLNYPSEPKIVGKISRRVSLVHYPEPKEVEELNPDKI 124
           F+DSSGK YD VS   QEPDE VF++  +EPKI GKISRRVS VHY +PKE+E LN    
Sbjct: 68  FKDSSGKVYDFVSYSAQEPDETVFVS-STEPKI-GKISRRVSTVHYSDPKELENLNSTNA 125

Query: 125 RQLHVTSSGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKR 184
           +  H  SSG          +G +S R     +   ++ ++ SR +S   E  EPS  SKR
Sbjct: 126 KHAHGNSSGV---------TGTTSSRYFPMQSSG-AASSKGSRQRSSLTEASEPSSISKR 175

Query: 185 RRAHEPNHSTDHSLGRHSEVTSLGSSERSHQEKLKRK 221
           R A +   +   +   HS   S  S + SH+ K KR+
Sbjct: 176 RHASKSKSNLSEASHGHSTGISSMSPDHSHEGKAKRR 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2174834	211	AT5G64680 "AT5G64680" [Arabido	0.808	0.857	0.372	2.8e-18

TAIR|locus:2174834 AT5G64680 "AT5G64680" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 79/212 (37%), Positives = 103/212 (48%)

Query:    21 DPLVDLSLIDSTELWLIQWPYKQMPDFDGKELSLELRGNGRLGSFEDSS--------GKA 72
             + L D  L  S E WLIQ P  Q P+ +   L +E   +G  G F+DS+        G  
Sbjct:    17 EQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAK 76

Query:    73 YDIVSNDFQEPDEMVFLNYPSEPK-IVGKISRRVSLVHYPEPKEVEELNPDKIRQLHVTS 131
             YD+ S  F   D    L  PSE   IVGKI+RRV+LV YPEP E+ +    + +Q  V  
Sbjct:    77 YDLAS--FHSQDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKLV-- 132

Query:   132 SGASMPNHRFASSGQSSWRRNSQSTLEHSSYTQSSRYKSFSPEGGEPSKHSKRRRAHEPN 191
                S+ N    SS +SS   N   +  H S T+SSR KS      E  K  KR+      
Sbjct:   133 --GSVTN----SSKKSS---NLTQSSRHKSGTRSSREKSMFSGFTETPKSPKRK------ 177

Query:   192 HSTDHSLGRHSEVTSL--GSSERSHQEKLKRK 221
              +++ S G+H   TS   GSSERS + K K K
Sbjct:   178 -NSESSSGKHRSSTSTVSGSSERSAKSKKKVK 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       218   0.00091  112 3  11 23  0.48    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.54u 0.16s 25.70t   Elapsed:  00:00:01
  Total cpu time:  25.54u 0.16s 25.70t   Elapsed:  00:00:01
  Start:  Fri May 10 11:08:52 2013   End:  Fri May 10 11:08:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF08208	198	RNA_polI_A34: DNA-directed RNA polymerase I subuni	98.29

>PF08208 RNA_polI_A34: DNA-directed RNA polymerase I subunit RPA34

Probab=98.29  E-value=9.9e-07  Score=73.68  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=50.2

Q ss_pred             CCCceeEEEecCCCCC-CCCCCceeEEeecCCcceeeeecCCCCeeeeeecc---CCCCCeeEEeeCCCCCc---cccee
Q 027342           29 IDSTELWLIQWPYKQM-PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSND---FQEPDEMVFLNYPSEPK---IVGKI  101 (224)
Q Consensus        29 tDStELWLIQ~P~~~~-~Df~G~~lslkl~~DG~Lg~Fe~SsGK~YdlVS~~---aq~pdatvfvpS~~e~~---ivgKI  101 (224)
                      .++.|||||++|.+.- .+|+|..|.|.--.+|. .-|+ -.|..|.|.+..   ......+||||+.....   ..-.|
T Consensus         2 ~~~kelWlI~~P~~~~~~~l~~l~i~l~~~~~~~-~~~~-~~~~~Y~i~~~~~~~~~~~~~~lL~p~~~~~~~~~~~~~~   79 (198)
T PF08208_consen    2 LDGKELWLIKAPASFPISSLKGLPIPLSKSQTGK-PILK-HKGKDYQISEDSINQEESSSISLLLPSKKGGGYLVASKPF   79 (198)
T ss_dssp             STTEEEEEEEEETTS-GGG-SEE---S---SBSE-EEEE-ETTEEEEEEEGGGSGS--TTEEEEEE-SSSTTEEESB---
T ss_pred             CCCCEEEEEeCCCCCCHHHhCCceeeeeeccCCc-ccee-eCCceEEEEecccCccccCCeEEEeEcCCCCceeccCCCc
Confidence            3678999999999995 67988888773334454 3343 589999999987   56788899999977553   36788


Q ss_pred             eeEEEee---ecCChh
Q 027342          102 SRRVSLV---HYPEPK  114 (224)
Q Consensus       102 sRRVsLV---rypeP~  114 (224)
                      .|-+.|.   ..|...
T Consensus        80 ~~~~~I~e~~~ip~~~   95 (198)
T PF08208_consen   80 DRFLHISEIVQIPQID   95 (198)
T ss_dssp             SEEEEEEE--------
T ss_pred             ceEEEEEEecCCCCcc
Confidence            8888886   455554

5; InterPro: IPR013240 This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription [].; PDB: 3NFG_N.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3nfg_B	123	DNA-directed RNA polymerase I subunit RPA34; tripl	97.26

>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B

Probab=97.26  E-value=0.00095  Score=53.63  Aligned_cols=93  Identities=20%  Similarity=0.426  Sum_probs=57.0

Q ss_pred             ccCCCchhhhcccCcccCCCC----CCCceeEEEecCCCCC-CCCCCceeEEeecCCcceeeeecCCCCeeeeeeccCCC
Q 027342            8 GYKPTEEYEEELRDPLVDLSL----IDSTELWLIQWPYKQM-PDFDGKELSLELRGNGRLGSFEDSSGKAYDIVSNDFQE   82 (224)
Q Consensus         8 ~YeP~~~Fve~~~e~l~d~~l----tDStELWLIQ~P~~~~-~Df~G~~lslkl~~DG~Lg~Fe~SsGK~YdlVS~~aq~   82 (224)
                      .|+|+.+|.--.-  |-.+..    .+..|||||.+|.+-- ..+.  +|  .++..|.-..|+ -.|+.|.|.++..|+
T Consensus         4 ~F~pP~~y~K~~~--lk~f~~~~~~l~~KevWlIkaP~~~plskLk--~L--pv~~~g~~~~~~-~~g~~Y~v~ed~~~~   76 (123)
T 3nfg_B            4 GYQPPSDYKQCKH--LKSFPVSELKGDNKELWLMKVPANIDISQLK--SL--PLDTDATVSTVE-LGSKNFNVLQNTSTQ   76 (123)
T ss_dssp             CCCCCTTEEECCS--CBCCCGGGTTCTTEEEEEEEEETTCCGGGCS--EE--CCCTTCSEEEEE-ETTEEEEEEEGGGSS
T ss_pred             cccCCCCcccccc--hhhcccccccCCCcEEEEEeCCCCCCHHHhc--cc--ccccCCCceeEE-ECCceeeeeeccccc
Confidence            6999999974331  222321    3678999999998863 4433  33  333335444466 469999998886653


Q ss_pred             -----CCeeEEeeCC--CC-Cccc-------ceeeeEEEe
Q 027342           83 -----PDEMVFLNYP--SE-PKIV-------GKISRRVSL  107 (224)
Q Consensus        83 -----pdatvfvpS~--~e-~~iv-------gKIsRRVsL  107 (224)
                           -.-.|++|+.  .+ ..++       -+|+|=.+|
T Consensus        77 ~~~d~sn~slL~p~~~~k~~l~~~~~~~~~~~~~dr~y~I  116 (123)
T 3nfg_B           77 EGSDNTNLSLLIPSEKKKETLKVATSKDNKSVYFDRVFTI  116 (123)
T ss_dssp             TTSCCTTEEEEEECSSSTTCEEECBCTTSCBCCCSEEEEE
T ss_pred             ccccccceEEEccccccCcceeecccccccCcceeeEEEE
Confidence                 2346888884  22 2442       247776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00