Citrus Sinensis ID: 027372

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSTTTLYNCATTKLCSSLINNSSSFSKSRLFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEcccccEEEEEcccccccccccccccccEEEEEEEEEEccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEcccccccccccHccccccccccccccEEcEEEEEEcccccEEEEEEccccccccccEEccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHccEHEEEEEEccccccccccEEHHcc
Coil and Loop (DISEMBL)
mstttlyncattkLCSSLinnsssfsksrlffssshfaprvssirrplslrgasrssssssSARAISTmgdattdaGMDAVQRRLMfedecilvdendrvvghenkynCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQrsgtkvtfplvwtntccshplyreselieeNALGVRNAAQRKLLDElgicaedvpvdeftplgrilykapsdgkwgehernvfi
Flexible Loop (DISEMBL)
mstttlyncattkLCSSLINNSSSFSKSRLFFssshfaprvssirrplslrgasrsssssssarAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILykapsdgkwgehernvfi
Low Complexity Region (SEG)
MSTTTLYNCATTKLCsslinnsssfsksrlffssshfAPRVSSIrrplslrgasrsssssssaraisTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Disordered region (IsUnstruct)
*****LYNCATTKLCSSLIN***********************************************************AVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA***************
Disordered Region (DISOPRED)
**********************************************************************************RRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Disordered Region (DISEMBL)
MSTTTLYNCATTKLCSSLINNSSSFSKSRLFFSSSHFAPRVSSIRRP**********************GDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Disordered Region (DISPRO)
*************LCSSLINNSS**********SSHFAPRVSSI*******************************AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTTTLYNCATTKLCSSLINNSSSFSKSRLFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
O48965	309	Isopentenyl-diphosphate D	N/A	no	0.816	0.592	0.764	1e-83
Q38929	291	Isopentenyl-diphosphate D	yes	no	0.799	0.615	0.801	6e-83
O48964	235	Isopentenyl-diphosphate D	N/A	no	0.696	0.663	0.884	1e-80
Q42553	284	Isopentenyl-diphosphate D	no	no	0.781	0.616	0.805	8e-80
Q39472	287	Isopentenyl-diphosphate D	N/A	no	0.781	0.609	0.797	8e-80
Q39471	286	Isopentenyl-diphosphate D	N/A	no	0.790	0.618	0.781	2e-79
Q39664	290	Isopentenyl-diphosphate D	N/A	no	0.901	0.696	0.714	4e-79
Q1LZ95	227	Isopentenyl-diphosphate D	no	no	0.660	0.651	0.615	8e-42
Q4R4W5	227	Isopentenyl-diphosphate D	N/A	no	0.660	0.651	0.602	5e-41
Q13907	227	Isopentenyl-diphosphate D	no	no	0.625	0.616	0.619	5e-41

>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1

 Score =  308 bits (790), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 160/195 (82%), Gaps = 12/195 (6%)

Query: 30  LFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFED 89
           +F SSSH + RVSS              SS ++    S MGD  TDAGMDAVQRRLMFED
Sbjct: 48  VFCSSSHLSVRVSSYH------------SSVAAKATTSAMGDTATDAGMDAVQRRLMFED 95

Query: 90  ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
           ECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFP
Sbjct: 96  ECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFP 155

Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 209
           LVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKA
Sbjct: 156 LVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKA 215

Query: 210 PSDGKWGEHERNVFI 224
           PSDGKWGEHE +  +
Sbjct: 216 PSDGKWGEHELDYLL 230

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
Camptotheca acuminata (taxid: 16922)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3

 Score =  306 bits (785), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 159/186 (85%), Gaps = 7/186 (3%)

Query: 39  PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
           PR+S IR P     A R+  S  +  A+ TM D + DAGMDAVQRRLMFEDECILVDEND
Sbjct: 35  PRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEND 87

Query: 99  RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
           RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 88  RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCS 147

Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           HPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEH
Sbjct: 148 HPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEH 207

Query: 219 ERNVFI 224
           E +  +
Sbjct: 208 EVDYLL 213

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1

 Score =  299 bits (765), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 145/156 (92%)

Query: 69  MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
           MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVF
Sbjct: 1   MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVF 60

Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
           LFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELG
Sbjct: 61  LFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELG 120

Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           I AEDVPVD+F PLGRILYKAPSDGKWGEHE +  +
Sbjct: 121 IPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLL 156

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Camptotheca acuminata (taxid: 16922)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 154/180 (85%), Gaps = 5/180 (2%)

Query: 46  RPLSLRGASRSSSSSSSARAIS-TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHE 104
           RPLS    S S     + RA S T    T DAGMDAVQRRLMFEDECILVDE DRVVGH+
Sbjct: 31  RPLS----SISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHD 86

Query: 105 NKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 164
           +KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRE
Sbjct: 87  SKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRE 146

Query: 165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           SELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE +  +
Sbjct: 147 SELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLL 206

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 155/178 (87%), Gaps = 3/178 (1%)

Query: 47  PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
           P+SL    R S+  + +   +TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+K
Sbjct: 35  PISL--TQRFSAKLTFSSQATTMGE-VVDAGMDAVQRRLMFEDECILVDENDKVVGHESK 91

Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
           YNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESE
Sbjct: 92  YNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESE 151

Query: 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           LI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHE +  +
Sbjct: 152 LIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLL 209

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/188 (78%), Positives = 159/188 (84%), Gaps = 11/188 (5%)

Query: 40  RVSSIRRPLSLRGASRSSSSSSSARAIST---MGDATTDAGMDAVQRRLMFEDECILVDE 96
           R S I  PLSLR        S S R+I+T   MG+A  DAGMDAVQRRLMF+DECILVDE
Sbjct: 29  RSSRIAAPLSLR-------VSLSTRSIATSIAMGEAA-DAGMDAVQRRLMFDDECILVDE 80

Query: 97  NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTC 156
            DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTC
Sbjct: 81  VDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTC 140

Query: 157 CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 216
           CSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWG
Sbjct: 141 CSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWG 200

Query: 217 EHERNVFI 224
           EHE +  +
Sbjct: 201 EHELDYLL 208

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1

 Score =  294 bits (752), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 166/210 (79%), Gaps = 8/210 (3%)

Query: 22  SSSFSKSRLFFSSSHFAPRVSSIRRPLSLRG----ASRSSSSSSSARAIST---MGDATT 74
           +S   K RLF   S  + R   I  P  LR     A  S  +S S R+I+T   MG+A  
Sbjct: 4   TSRLYKPRLFSLPSQHSFRALPILSP-PLRSSCIPAPLSVRASLSTRSIATSIAMGEAAA 62

Query: 75  DAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY 134
           DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+
Sbjct: 63  DAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKF 122

Query: 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
           ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDV
Sbjct: 123 ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDV 182

Query: 195 PVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           PVDEFTP+ R+LYKAPSDGKWGEHE +  +
Sbjct: 183 PVDEFTPVSRMLYKAPSDGKWGEHELDYLL 212

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia xantiana (taxid: 3938)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 108/151 (71%), Gaps = 3/151 (1%)

Query: 69  MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
           M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVF
Sbjct: 1   MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVF 57

Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
           LFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELG
Sbjct: 58  LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELG 117

Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
           I  E+VP +E   L RI YKA SD  WGEHE
Sbjct: 118 IPMEEVPPEEINYLTRIHYKAQSDSIWGEHE 148

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 106/151 (70%), Gaps = 3/151 (1%)

Query: 69  MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
           M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVF
Sbjct: 1   MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57

Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
           LFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELG
Sbjct: 58  LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELG 117

Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
           I  E+VP +E   L RI YKA SDG WGEHE
Sbjct: 118 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHE 148

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Macaca fascicularis (taxid: 9541)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)

Query: 78  MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
           +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LL
Sbjct: 9   LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 66

Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
           LQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +
Sbjct: 67  LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 126

Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
           E   L RI YKA SDG WGEHE
Sbjct: 127 EINYLTRIHYKAQSDGIWGEHE 148

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
74027234	296	isopentenyl diphosphate isomerase [Ipomo	0.937	0.709	0.729	1e-83
6225532	309	RecName: Full=Isopentenyl-diphosphate De	0.816	0.592	0.764	7e-82
79514626	291	Isopentenyl-diphosphate Delta-isomerase	0.799	0.615	0.801	4e-81
78191045	292	isopentenyl pyrophosphate isomerase [Nic	0.794	0.609	0.806	4e-81
1213442	262	isopentenyl pyrophosphate isomerase [Ara	0.799	0.683	0.801	6e-81
297807669	289	isopentenyl pyrophosphate isomerase [Ara	0.803	0.622	0.809	7e-81
35186998	301	isopentenyl pyrophosphate isomerase [Pue	0.767	0.571	0.814	2e-80
13603406	290	isopentenyl diphosphate isomerase 1 [Nic	0.767	0.593	0.835	3e-80
157072591	305	isopentenyl pyrophosphate isomerase [Sal	0.812	0.596	0.777	3e-80
363807460	301	uncharacterized protein LOC100789313 [Gl	0.767	0.571	0.814	3e-80

>gi|74027234|gb|AAZ94730.1| isopentenyl diphosphate isomerase [Ipomoea batatas]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 173/218 (79%), Gaps = 8/218 (3%)

Query: 10  ATTKLC---SSLINNSSSFSKSRLFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAI 66
           A+ ++C   S L+   + +S +  F S   FA    SI  P+ LR      +S  S RA 
Sbjct: 5   ASVQICRRFSPLVARPAIYSANSSFLSPVSFASSSLSIM-PIRLR----CRASVHSVRAA 59

Query: 67  STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFS 126
           STMGD  TDA MDAVQRRLMF+DECILVDENDRVVGH+ KYNCHLMEKIES NLLHRAFS
Sbjct: 60  STMGDTITDANMDAVQRRLMFDDECILVDENDRVVGHDTKYNCHLMEKIESENLLHRAFS 119

Query: 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE 186
           VFLFNS YELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE
Sbjct: 120 VFLFNSNYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE 179

Query: 187 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           LGI AEDVPVDEFT LGRILYKAPSDG+WGEHE +  +
Sbjct: 180 LGIPAEDVPVDEFTTLGRILYKAPSDGRWGEHELDYLL 217

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6225532|sp|O48965.1|IDI2_CAMAC RecName: Full=Isopentenyl-diphosphate Delta-isomerase II; AltName: Full=Isopentenyl pyrophosphate isomerase II; Short=IPP isomerase II gi|2736288|gb|AAB94133.1| isopentenyl diphosphate isomerase II [Camptotheca acuminata]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 160/195 (82%), Gaps = 12/195 (6%)

Query: 30  LFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFED 89
           +F SSSH + RVSS              SS ++    S MGD  TDAGMDAVQRRLMFED
Sbjct: 48  VFCSSSHLSVRVSSYH------------SSVAAKATTSAMGDTATDAGMDAVQRRLMFED 95

Query: 90  ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
           ECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFP
Sbjct: 96  ECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFP 155

Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 209
           LVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKA
Sbjct: 156 LVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKA 215

Query: 210 PSDGKWGEHERNVFI 224
           PSDGKWGEHE +  +
Sbjct: 216 PSDGKWGEHELDYLL 230

Source: Camptotheca acuminata

Species: Camptotheca acuminata

Genus: Camptotheca

Family: Cornaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79514626|ref|NP_197148.3| Isopentenyl-diphosphate Delta-isomerase I [Arabidopsis thaliana] gi|334302895|sp|Q38929.3|IDI1_ARATH RecName: Full=Isopentenyl-diphosphate Delta-isomerase I, chloroplastic; AltName: Full=Isopentenyl pyrophosphate isomerase I; Short=IPP isomerase I; Flags: Precursor gi|9759126|dbj|BAB09611.1| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Arabidopsis thaliana] gi|332004909|gb|AED92292.1| Isopentenyl-diphosphate Delta-isomerase I [Arabidopsis thaliana]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 159/186 (85%), Gaps = 7/186 (3%)

Query: 39  PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
           PR+S IR P     A R+  S  +  A+ TM D + DAGMDAVQRRLMFEDECILVDEND
Sbjct: 35  PRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEND 87

Query: 99  RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
           RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 88  RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCS 147

Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           HPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEH
Sbjct: 148 HPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEH 207

Query: 219 ERNVFI 224
           E +  +
Sbjct: 208 EVDYLL 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78191045|gb|ABB29847.1| isopentenyl pyrophosphate isomerase [Nicotiana langsdorffii x Nicotiana sanderae]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/186 (80%), Positives = 160/186 (86%), Gaps = 8/186 (4%)

Query: 39  PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
           P + S RR  SLR      SSSS+ R    M DA +DA MDAVQRRLMFEDECILVDE+D
Sbjct: 36  PLLKSHRRAASLR----CYSSSSATR----MADAVSDANMDAVQRRLMFEDECILVDEDD 87

Query: 99  RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
           RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 88  RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCS 147

Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           HPLYR+SELIEENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYKAPSDGKWGEH
Sbjct: 148 HPLYRDSELIEENALGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRILYKAPSDGKWGEH 207

Query: 219 ERNVFI 224
           E +  +
Sbjct: 208 ELDYLL 213

Source: Nicotiana langsdorffii x Nicotiana sanderae

Species: Nicotiana langsdorffii x Nicotiana sanderae

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1213442|gb|AAB67741.1| isopentenyl pyrophosphate isomerase [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 159/186 (85%), Gaps = 7/186 (3%)

Query: 39  PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
           PR+S IR P     A R+  S  +  A+ TM D + DAGMDAVQRRLMFEDECILVDEND
Sbjct: 6   PRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEND 58

Query: 99  RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
           RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 59  RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCS 118

Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           HPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEH
Sbjct: 119 HPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEH 178

Query: 219 ERNVFI 224
           E +  +
Sbjct: 179 EVDYLL 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807669|ref|XP_002871718.1| isopentenyl pyrophosphate isomerase [Arabidopsis lyrata subsp. lyrata] gi|297317555|gb|EFH47977.1| isopentenyl pyrophosphate isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 161/189 (85%), Gaps = 9/189 (4%)

Query: 37  FAP-RVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVD 95
           FAP R S IR P      +RS  S  +  A+ TM DA  DAGMDAVQRRLMFEDECILVD
Sbjct: 31  FAPLRHSPIRSP------ARSHLSFRTFSAV-TMTDAN-DAGMDAVQRRLMFEDECILVD 82

Query: 96  ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155
           ENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNT
Sbjct: 83  ENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNT 142

Query: 156 CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKW 215
           CCSHPLYRESELIEEN LGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKW
Sbjct: 143 CCSHPLYRESELIEENVLGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKW 202

Query: 216 GEHERNVFI 224
           GEHE +  +
Sbjct: 203 GEHELDYLL 211

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|35186998|gb|AAQ84167.1| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 155/178 (87%), Gaps = 6/178 (3%)

Query: 47  PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
           PL+L      ++S SS  A+        DAGMDAVQRRLMFEDECILVDENDRVVGH++K
Sbjct: 51  PLTL------TASFSSHTAMGETSAPAADAGMDAVQRRLMFEDECILVDENDRVVGHDSK 104

Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
           YNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESE
Sbjct: 105 YNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESE 164

Query: 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           LIEENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHE +  +
Sbjct: 165 LIEENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLL 222

Source: Pueraria montana var. lobata

Species: Pueraria montana

Genus: Pueraria

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13603406|dbj|BAB40973.1| isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 154/176 (87%), Gaps = 4/176 (2%)

Query: 49  SLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYN 108
           S R A+     SSS R    MGDA  DA MDAVQRRLMFEDECILVDENDRVVGH+ KYN
Sbjct: 40  SHRIAASLRCYSSSTR----MGDAIADANMDAVQRRLMFEDECILVDENDRVVGHDTKYN 95

Query: 109 CHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELI 168
           CHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYR+SELI
Sbjct: 96  CHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRDSELI 155

Query: 169 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           EENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHE +  +
Sbjct: 156 EENALGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLL 211

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157072591|gb|ABV08818.1| isopentenyl pyrophosphate isomerase [Salvia miltiorrhiza]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 159/189 (84%), Gaps = 7/189 (3%)

Query: 37  FAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGD-ATTDAGMDAVQRRLMFEDECILVD 95
           F P+ ++   P  LR A+      S   A STMGD A  D+ MDAVQRRLMFEDECILVD
Sbjct: 44  FHPKPNAAATPFGLRFAA------SFTAATSTMGDVAAADSAMDAVQRRLMFEDECILVD 97

Query: 96  ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155
           END VVGHE+KYNCHLMEKIE+LNLLH AFSVFLFNSKYELLLQQRS TKVTFPLVWTNT
Sbjct: 98  ENDHVVGHESKYNCHLMEKIEALNLLHGAFSVFLFNSKYELLLQQRSTTKVTFPLVWTNT 157

Query: 156 CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKW 215
           CCSHPLYR+SELIEENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKW
Sbjct: 158 CCSHPLYRDSELIEENALGVRNAAQRKLLDELGIPAEDVPVDQFVPLGRMLYKAPSDGKW 217

Query: 216 GEHERNVFI 224
           GEHE +  +
Sbjct: 218 GEHELDYLL 226

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807460|ref|NP_001242135.1| uncharacterized protein LOC100789313 [Glycine max] gi|255647098|gb|ACU24017.1| unknown [Glycine max]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 155/178 (87%), Gaps = 6/178 (3%)

Query: 47  PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
           PLSL      ++S SS  A+        DAGMDAVQRRLMFEDECILVDENDRVVGH++K
Sbjct: 51  PLSL------TASFSSHTAMGETSAPAADAGMDAVQRRLMFEDECILVDENDRVVGHDSK 104

Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
           YNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESE
Sbjct: 105 YNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESE 164

Query: 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           LI+ENALGVRNAAQRKLLDELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHE +  +
Sbjct: 165 LIDENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLL 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2171382	291	IPP1 "isopentenyl diphosphate	0.674	0.518	0.914	3.2e-72
TAIR|locus:2075412	284	IPP2 "isopentenyl pyrophosphat	0.656	0.517	0.918	1.8e-71
UNIPROTKB|Q1LZ95	227	IDI1 "Isopentenyl-diphosphate	0.660	0.651	0.615	2e-40
UNIPROTKB|I3LDY2	287	LOC100739304 "Uncharacterized	0.665	0.519	0.592	6.8e-40
UNIPROTKB|Q13907	227	IDI1 "Isopentenyl-diphosphate	0.625	0.616	0.619	1.4e-39
UNIPROTKB|G4MT46	254	MGG_07125 "Isopentenyl-diphosp	0.660	0.582	0.587	3.7e-39
ZFIN|ZDB-GENE-050913-44	278	idi1 "isopentenyl-diphosphate	0.683	0.550	0.564	6.1e-39
UNIPROTKB|F1NZX3	233	IDI1 "Uncharacterized protein"	0.665	0.639	0.572	4.3e-38
ASPGD|ASPL0000061206	268	AN0579 [Emericella nidulans (t	0.633	0.529	0.564	7e-38
MGI|MGI:2442264	227	Idi1 "isopentenyl-diphosphate	0.625	0.616	0.577	1.9e-37

TAIR|locus:2171382 IPP1 "isopentenyl diphosphate isomerase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 139/152 (91%), Positives = 143/152 (94%)

Query:    68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV 127
             TM D+  DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSV
Sbjct:    58 TMTDSN-DAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSV 116

Query:   128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL 187
             FLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DEL
Sbjct:   117 FLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDEL 176

Query:   188 GICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
             GI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE
Sbjct:   177 GIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHE 208

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA;IMP

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

TAIR|locus:2075412 IPP2 "isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 135/147 (91%), Positives = 141/147 (95%)

Query:    73 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNS 132
             T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNS
Sbjct:    55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNS 114

Query:   133 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192
             KYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AE
Sbjct:   115 KYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAE 174

Query:   193 DVPVDEFTPLGRILYKAPSDGKWGEHE 219
             DVPVDEFTPLGR+LYKAPSDGKWGEHE
Sbjct:   175 DVPVDEFTPLGRMLYKAPSDGKWGEHE 201

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

UNIPROTKB|Q1LZ95 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Bos taurus (taxid:9913)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 93/151 (61%), Positives = 108/151 (71%)

Query:    69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
             M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVF
Sbjct:     1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVF 57

Query:   129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
             LFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELG
Sbjct:    58 LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELG 117

Query:   189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
             I  E+VP +E   L RI YKA SD  WGEHE
Sbjct:   118 IPMEEVPPEEINYLTRIHYKAQSDSIWGEHE 148

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|I3LDY2 LOC100739304 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 90/152 (59%), Positives = 108/152 (71%)

Query:    68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV 127
             TM +  TD  +DA Q +L+ E  CIL+DENDR +G E K NCHL E I+   LLHRAFSV
Sbjct:    60 TMPEINTDH-LDAQQVQLLAE-MCILIDENDRRIGAETKKNCHLNENIKK-GLLHRAFSV 116

Query:   128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL 187
             FLFN++ +LLLQQRS  K+TFP  ++N CCSHPL    EL E +A+GVR AAQR+L  EL
Sbjct:   117 FLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAEL 176

Query:   188 GICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
             GI  E+VP +E   L RI YKA SDG WGEHE
Sbjct:   177 GIPLEEVPPEEINYLTRIYYKAQSDGIWGEHE 208

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

UNIPROTKB|Q13907 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Homo sapiens (taxid:9606)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 88/142 (61%), Positives = 103/142 (72%)

Query:    78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
             +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LL
Sbjct:     9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 66

Query:   138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
             LQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +
Sbjct:    67 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 126

Query:   198 EFTPLGRILYKAPSDGKWGEHE 219
             E   L RI YKA SDG WGEHE
Sbjct:   127 EINYLTRIHYKAQSDGIWGEHE 148

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|G4MT46 MGG_07125 "Isopentenyl-diphosphate Delta-isomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/155 (58%), Positives = 107/155 (69%)

Query:    68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV 127
             T G+A    G D  Q RLM ++ CI+VDEND  +G  +K  CHLM  IE   LLHRAFSV
Sbjct:    26 TSGEALD--GHDEEQIRLM-DEVCIVVDENDMPIGKGSKKICHLMTNIEK-GLLHRAFSV 81

Query:   128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL---IEENALGVRNAAQRKLL 184
             FLFN K ELLLQQR+  K+TFP +WTNTCCSHPL    E    + ++ +GV+ AAQRKL 
Sbjct:    82 FLFNDKNELLLQQRATEKITFPDMWTNTCCSHPLGIPGETGSNLPDSIMGVKRAAQRKLD 141

Query:   185 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
              ELGI  E VP++ F  L RI YKAPSDGKWGEHE
Sbjct:   142 HELGIKKEQVPLENFHFLTRIHYKAPSDGKWGEHE 176

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-050913-44 idi1 "isopentenyl-diphosphate delta isomerase 1" [Danio rerio (taxid:7955)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 88/156 (56%), Positives = 110/156 (70%)

Query:    69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
             M +   D  +D  Q +L+ E  CIL+DEND+ +G ++K NCHL   I+   LLHRAFSVF
Sbjct:    52 MPEVNMD-NLDEKQVQLLAE-MCILIDENDKKIGADSKKNCHLNSNIDK-GLLHRAFSVF 108

Query:   129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
             LFNS+ +LLLQQRS  K+TFP  +TNTCCSHPL+  SEL E++A+GVR AAQR+L  ELG
Sbjct:   109 LFNSEEKLLLQQRSDAKITFPGCFTNTCCSHPLHTTSELEEQDAIGVRRAAQRRLQAELG 168

Query:   189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
             I  + V  +E T L RI YKA SDG WGEHE +  I
Sbjct:   169 IPMDQVLPEEMTYLTRIHYKAQSDGVWGEHEIDYII 204

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NZX3 IDI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 87/152 (57%), Positives = 107/152 (70%)

Query:    68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV 127
             TM + +TD  +D  Q +L+ E  CIL++ENDR +G + K NCHL E I+   LLHRAFSV
Sbjct:     6 TMPEVSTDH-LDEQQVQLLAE-MCILIEENDRRIGADTKKNCHLNENIDR-GLLHRAFSV 62

Query:   128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL 187
             FLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +A+GVR AAQR++  EL
Sbjct:    63 FLFNTENKLLLQQRSNAKITFPDCFTNTCCSHPLSHPLELEENDAIGVRRAAQRRMKAEL 122

Query:   188 GICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
             GI  E V  +E   L RI YKA SDG WGEHE
Sbjct:   123 GIPMEQVTPEEIFYLTRIHYKAKSDGIWGEHE 154

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ASPGD|ASPL0000061206 AN0579 [Emericella nidulans (taxid:162425)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 83/147 (56%), Positives = 105/147 (71%)

Query:    76 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYE 135
             AG D  Q RLM ++ CI++D++D+ +G  +K  CHLM  I+   LLHRAFSVFLF+S+  
Sbjct:    46 AGYDEEQVRLM-DEVCIVLDDDDKPIGSASKKTCHLMTNIDR-GLLHRAFSVFLFDSQNR 103

Query:   136 LLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL---IEENALGVRNAAQRKLLDELGICAE 192
             LLLQQR+  K+TFP +WTNTCCSHPL    E    ++   LGV+ AAQRKL  ELGI  E
Sbjct:   104 LLLQQRASEKITFPDMWTNTCCSHPLGIPGETGSQLDAAILGVKRAAQRKLNHELGIKPE 163

Query:   193 DVPVDEFTPLGRILYKAPSDGKWGEHE 219
             +VP+++F    RI YKAPSDGKWGEHE
Sbjct:   164 EVPIEKFEFFTRIHYKAPSDGKWGEHE 190

GO:0016125 "sterol metabolic process" evidence=RCA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;RCA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0045337 "farnesyl diphosphate biosynthetic process" evidence=IEA

MGI|MGI:2442264 Idi1 "isopentenyl-diphosphate delta isomerase" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 82/142 (57%), Positives = 102/142 (71%)

Query:    78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
             +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LL
Sbjct:     9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66

Query:   138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
             LQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++
Sbjct:    67 LQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLN 126

Query:   198 EFTPLGRILYKAPSDGKWGEHE 219
             E   L RI YKA SDG WGEHE
Sbjct:   127 EMDYLTRIYYKAQSDGIWGEHE 148

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=ISO

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39471	IDI2_CLABR	5, ., 3, ., 3, ., 2	0.7819	0.7901	0.6188	N/A	no
Q39472	IDI1_CLABR	5, ., 3, ., 3, ., 2	0.7977	0.7812	0.6097	N/A	no
Q5R8R6	IDI1_PONAB	5, ., 3, ., 3, ., 2	0.5960	0.6607	0.6519	yes	no
Q38929	IDI1_ARATH	5, ., 3, ., 3, ., 2	0.8010	0.7991	0.6151	yes	no
Q39664	IDI2_CLAXA	5, ., 3, ., 3, ., 2	0.7142	0.9017	0.6965	N/A	no
Q10132	IDI1_SCHPO	5, ., 3, ., 3, ., 2	0.5324	0.6651	0.6506	yes	no
O48964	IDI1_CAMAC	5, ., 3, ., 3, ., 2	0.8846	0.6964	0.6638	N/A	no
O35760	IDI1_RAT	5, ., 3, ., 3, ., 2	0.5625	0.6339	0.6255	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	0.946
3rd Layer	5.3.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
PLN02552	247	PLN02552, PLN02552, isopentenyl-diphosphate delta-	1e-107
cd02885	165	cd02885, IPP_Isomerase, Isopentenyl diphosphate (I	4e-61
TIGR02150	158	TIGR02150, IPP_isom_1, isopentenyl-diphosphate del	3e-52
COG1443	185	COG1443, Idi, Isopentenyldiphosphate isomerase [Li	4e-45
PRK03759	184	PRK03759, PRK03759, isopentenyl-diphosphate delta-	3e-26
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	2e-11
pfam00293	133	pfam00293, NUDIX, NUDIX domain	4e-10
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	4e-09
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	7e-08
PLN02791	770	PLN02791, PLN02791, Nudix hydrolase homolog	4e-05
PRK15393	180	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisio	2e-04

>gnl|CDD|215303 PLN02552, PLN02552, isopentenyl-diphosphate delta-isomerase

 Score =  307 bits (787), Expect = e-107
 Identities = 123/167 (73%), Positives = 130/167 (77%), Gaps = 14/167 (8%)

Query: 67  STMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFS 126
                  T AGMDAVQRRLMFEDECILVDEND VVGH++KYNCHL EKIE   LLHRAFS
Sbjct: 1   MGTMADATWAGMDAVQRRLMFEDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFS 60

Query: 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY--------RESELIEENALGVRNA 178
           VFLFNSKYELLLQQR+ TKVTFPLVWTNTCCSHPLY        RESELI+ N LGV+NA
Sbjct: 61  VFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNA 120

Query: 179 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GKWGEHE 219
           AQRKLL ELGI AEDVPVD+FT L R+ YKA  D      GKWGEHE
Sbjct: 121 AQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHE 167

Length = 247

>gnl|CDD|239218 cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

 Score =  188 bits (479), Expect = 4e-61
 Identities = 66/132 (50%), Positives = 78/132 (59%), Gaps = 18/132 (13%)

Query: 88  EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
           E+  ILVDE+D  +G   K   HL        LLHRAFSVFLFNSK  LLLQ+R+ +K T
Sbjct: 1   EELVILVDEDDNPIGTAEKLEAHLKG-----TLLHRAFSVFLFNSKGRLLLQRRALSKYT 55

Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 207
           FP +WTNTCCSHPL  E         GV++AAQR+L +ELGI            L R  Y
Sbjct: 56  FPGLWTNTCCSHPLPGE---------GVKDAAQRRLREELGI----TGDLLELVLPRFRY 102

Query: 208 KAPSDGKWGEHE 219
           +AP DG   EHE
Sbjct: 103 RAPDDGGLVEHE 114

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved. Length = 165

>gnl|CDD|233749 TIGR02150, IPP_isom_1, isopentenyl-diphosphate delta-isomerase, type 1

 Score =  165 bits (420), Expect = 3e-52
 Identities = 65/129 (50%), Positives = 79/129 (61%), Gaps = 21/129 (16%)

Query: 91  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 150
            ILVDEND  +G  +K   HL E       LHRAFSVFLFN + +LLLQ+R+ +K+T+P 
Sbjct: 1   VILVDENDNPIGTASKAEVHLQE-----TPLHRAFSVFLFNEEGQLLLQRRALSKITWPG 55

Query: 151 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 210
           VWTN+CCSHPL  E E           AA R+L +ELGI A+DVP    T L R  Y+A 
Sbjct: 56  VWTNSCCSHPLPGELE-----------AAIRRLREELGIPADDVP---LTVLPRFSYRAR 101

Query: 211 SDGKWGEHE 219
               WGEHE
Sbjct: 102 D--AWGEHE 108

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 158

>gnl|CDD|224360 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism]

 Score =  148 bits (375), Expect = 4e-45
 Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 15/134 (11%)

Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
              ++ IL++++D   G   K   H  +       LHRAFS FLFN + +LLL +R+ +K
Sbjct: 1   NMTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSK 56

Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
            T+P VWTN+ CSHPL  ES           +AA+R+L  ELGI  +     E  P  R 
Sbjct: 57  KTWPGVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQYDKLEILP--RF 105

Query: 206 LYKAPSDGKWGEHE 219
            Y+A       E+E
Sbjct: 106 RYRAADPDGIVENE 119

Length = 185

>gnl|CDD|235156 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase; Provisional

 Score = 99.7 bits (249), Expect = 3e-26
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 19/140 (13%)

Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  +L+DE     G   K   H      +   LH AFS +LF++   LL+ +R+ +K
Sbjct: 3   METELVVLLDEQGVPTGTAEKAAAH-----TADTPLHLAFSCYLFDADGRLLVTRRALSK 57

Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
            T+P VWTN+CC HP   ES         + +A  R+  +ELG+       D    L   
Sbjct: 58  KTWPGVWTNSCCGHPQPGES---------LEDAVIRRCREELGV----EITDLELVLPDF 104

Query: 206 LYKAPSDGKWGEHERN-VFI 224
            Y+A       E+E   VF 
Sbjct: 105 RYRATDPNGIVENEVCPVFA 124

Length = 184

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 122 HRAFSVFLFNSKYE---LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 178
           HR F  ++         +LLQ+RS  K T+P +W  +   H L  E+ L +         
Sbjct: 2   HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLED--------- 52

Query: 179 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERN-VFI 224
             R+L +ELG+   DV  D+  PLG    +    GK  + E + V++
Sbjct: 53  GIRELEEELGL---DVSADDLIPLGTFKIEYDHIGKLIDREFHHVYL 96

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 180
             RA  V L N   E+LL +RS   V FP +W             E  EE       AA 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPV-FPGLWELPGGKVE---PGESPEE-------AAV 49

Query: 181 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHER 220
           R+L +E G+      V     LG + Y AP     GEH  
Sbjct: 50  RELEEETGL-----RVLLLLLLGVLEYPAPGRD-GGEHVH 83

Length = 133

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRK 182
           RA  +F+FNS+ +L + +R+ TK   P  W           ES L           AQR+
Sbjct: 1   RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQ---------NAQRE 51

Query: 183 LLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 216
           L +ELGI  + V     TPLG   Y    +  WG
Sbjct: 52  LEEELGI--DGVQ---LTPLGLFYYDTDGNRVWG 80

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 19/98 (19%)

Query: 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE 186
           V +FNSK ELLLQ+RS  K  +P +W  +   H    E+            AA+R++ +E
Sbjct: 5   VCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS----------TAAEREVKEE 54

Query: 187 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
           LG    ++   E  PL R  ++A         +     
Sbjct: 55  LG---LELDFSELRPLFRYFFEAEG------FDDYYLF 83

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 14/102 (13%)

Query: 122 HRAFSVFLF-NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 180
           HRA  V+++  S  ELLLQ+R+  K ++P  W  +   H    ++ L+         +AQ
Sbjct: 32  HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL---------SAQ 82

Query: 181 RKLLDELGICAEDVPVDEFTPLGRILYK-APSDGKWGEHERN 221
           R+L +ELGI    +P D F  L   L +   +DGK+  +E N
Sbjct: 83  RELEEELGI---ILPKDAFELLFVFLQECVINDGKFINNEYN 121

Length = 770

>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 20/135 (14%)

Query: 82  QRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQR 141
           QRRL   +   +V+EN+ V+   ++      E++ +  L HRA  + + +   ++L+Q+R
Sbjct: 3   QRRLASTEWVDIVNENNEVIAQASR------EQMRAQCLRHRATYIVVHDGMGKILVQRR 56

Query: 142 SGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201
           + TK   P    +      +    +L+E        +A+R+  +ELGI    VP   F  
Sbjct: 57  TETKDFLP-GMLDATAGGVVQAGEQLLE--------SARREAEEELGI--AGVP---FAE 102

Query: 202 LGRILYKAPSDGKWG 216
            G+  ++  +   WG
Sbjct: 103 HGQFYFEDENCRVWG 117

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	100.0
PLN02552	247	isopentenyl-diphosphate delta-isomerase	100.0
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	100.0
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.96
PLN02791	770	Nudix hydrolase homolog	99.96
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.95
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.95
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.94
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.92
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.85
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.75
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.72
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.68
PLN02839	372	nudix hydrolase	99.66
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.64
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.62
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.6
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.58
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.52
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.52
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.51
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.51
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.51
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.5
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.5
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.48
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.47
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.47
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.47
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.47
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.47
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.46
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.45
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.45
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.45
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.44
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.43
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.42
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.42
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.41
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.4
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.4
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.39
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.39
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.39
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.39
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.39
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.37
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.35
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.35
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.33
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.31
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.3
PLN02325	144	nudix hydrolase	99.3
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	99.29
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.28
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.27
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.27
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.25
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.23
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.21
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.17
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.17
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.16
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.15
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.12
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.11
PRK10707	190	putative NUDIX hydrolase; Provisional	99.08
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.01
PRK08999	312	hypothetical protein; Provisional	98.98
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	98.97
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	98.96
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	98.95
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	98.91
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	98.89
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.86
PLN02709	222	nudix hydrolase	98.82
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	98.81
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	98.74
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	98.73
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	98.56
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	98.52
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.45
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.33
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	98.24
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.17
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.16
PLN03143	291	nudix hydrolase; Provisional	98.05
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	97.99
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	97.94
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	97.61
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	97.01
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.32
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	96.2
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	96.13
KOG4195	275	consensus Transient receptor potential-related cha	91.99
PF14443	126	DBC1: DBC1	91.79
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	87.7
PRK10880	350	adenine DNA glycosylase; Provisional	85.93
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	82.15

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.2e-49  Score=340.19  Aligned_cols=153  Identities=66%  Similarity=1.020  Sum_probs=146.9

Q ss_pred             CCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCC
Q 027372           70 GDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP  149 (224)
Q Consensus        70 ~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfP  149 (224)
                      |.+..+++||+.|.++|.+ .|++||+||++||..+|+.||+|+++++ |++|||||||+||++|++||||||..|++||
T Consensus         2 ~~~~~~~~~d~~Q~~~l~e-~ci~VDenD~~IG~~tk~~cHl~eni~k-glLHRaFSVFlFns~~~lLlQqRS~~KitFP   79 (225)
T KOG0142|consen    2 MSETNLSGMDEQQVKLLAE-NCILVDENDNVIGAGTKKNCHLMENIEK-GLLHRAFSVFLFNSKNELLLQQRSDEKITFP   79 (225)
T ss_pred             CccccccccCHHHHHHHhh-heEeeccccccccchhhhhhhcchhHHh-hhhhheeeEEEecCcchHHHhhhcccccccc
Confidence            5678999999999999986 9999999999999999999999999976 8999999999999999999999999999999


Q ss_pred             CceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       150 G~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      +.|+|+|||||++...++.+.+++|++.||+|.|+.||||+.+.++.++|+|+++|||++++++.||||||||||
T Consensus        80 ~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL  154 (225)
T KOG0142|consen   80 GLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYIL  154 (225)
T ss_pred             chhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEE
Confidence            999999999999877777788899999999999999999999999999999999999999999999999999996

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=100.00  E-value=6.3e-42  Score=303.59  Aligned_cols=156  Identities=77%  Similarity=1.202  Sum_probs=142.4

Q ss_pred             cCCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCC
Q 027372           69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF  148 (224)
Q Consensus        69 ~~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tf  148 (224)
                      +|.+....+||++|+++|++|.|+|||+||+++|.++|+.||+++++..+|++||+|+|||||++|+||||||+..|.+|
T Consensus         3 ~~~~~~~~~~~~~q~~~~~~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~   82 (247)
T PLN02552          3 TMADATWAGMDAVQRRLMFEDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTF   82 (247)
T ss_pred             ccccccccccCHHHHhhhhcCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCC
Confidence            57788999999999999998999999999999999999999987667678999999999999999999999999999999


Q ss_pred             CCceeecCCccCCCCCC--------hhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccC------CC
Q 027372          149 PLVWTNTCCSHPLYRES--------ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GK  214 (224)
Q Consensus       149 PG~Wd~t~gGh~~~gEs--------~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~------~~  214 (224)
                      ||+||++|||||.+||+        ++..+.++|+.+||+|||+|||||....+++++|.+++++.|..+..      ++
T Consensus        83 Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~  162 (247)
T PLN02552         83 PLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGK  162 (247)
T ss_pred             CcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCC
Confidence            99999999999999854        33445667789999999999999998877778899999999999876      78


Q ss_pred             eeeeeeeeeC
Q 027372          215 WGEHERNVFI  224 (224)
Q Consensus       215 wgEhEidyil  224 (224)
                      |+|||+||+|
T Consensus       163 ~~E~e~~~v~  172 (247)
T PLN02552        163 WGEHELDYLL  172 (247)
T ss_pred             ccceEEEEEE
Confidence            9999999985

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=100.00  E-value=5.5e-38  Score=265.67  Aligned_cols=123  Identities=40%  Similarity=0.612  Sum_probs=115.7

Q ss_pred             hcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCCh
Q 027372           87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE  166 (224)
Q Consensus        87 ~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~  166 (224)
                      .+|.|+++|++|+++|.++|..||.|+.++    +||||++||||.+|+||||||+..|.+|||.|||+|||||.+||+ 
T Consensus         2 ~~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es-   76 (185)
T COG1443           2 MTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES-   76 (185)
T ss_pred             CceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc-
Confidence            457999999999999999999999975542    999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       167 ~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                              .++||+|+|.+||||++..  .+.+.++.+|+|++++.++|+||||||||
T Consensus        77 --------~~~A~~rRl~~ELGie~~~--~d~~~il~rf~YrA~~~~~~~E~Eic~V~  124 (185)
T COG1443          77 --------NEDAARRRLAYELGIEPDQ--YDKLEILPRFRYRAADPDGIVENEICPVL  124 (185)
T ss_pred             --------hHHHHHHHHHHHhCCCCcc--cCccccccceEEeccCCCCcceeeeeeEE
Confidence                    7999999999999999986  46789999999999999999999999996

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.96  E-value=2.5e-29  Score=209.57  Aligned_cols=121  Identities=14%  Similarity=0.142  Sum_probs=104.4

Q ss_pred             hcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEE--EEeCC--CeEEEEEecCCCCCCCCceeecCCccCCC
Q 027372           87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLY  162 (224)
Q Consensus        87 ~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~--lfn~~--g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~  162 (224)
                      .+|.++|||++|+++|.++|..+|.      +|++||+|+++  ++|.+  ++||+|||+..|.+|||+||++||||++.
T Consensus         3 ~~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~   76 (180)
T cd03676           3 RNELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH   76 (180)
T ss_pred             cCcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCC
Confidence            3689999999999999999999884      79999999965  55766  89999999999999999999999999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ||+         +.+||+|||+|||||+...+  ..+.+++.+.|.....+....+|++|+|
T Consensus        77 gE~---------~~~aA~REl~EE~Gl~~~~~--~~l~~~g~~~~~~~~~~~~~~~e~~~~f  127 (180)
T cd03676          77 GEG---------PEETLVKECDEEAGLPEDLV--RQLKPVGVVSYLREGEAGGLQPEVEYVY  127 (180)
T ss_pred             CCC---------HHHHHHHHHHHHhCCCHHHH--hhceeccEEEEEEEcCCCcEeeeEEEEE
Confidence            999         79999999999999998653  2367888888877634456788888875

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PLN02791 Nudix hydrolase homolog

Probab=99.96  E-value=2.8e-29  Score=250.81  Aligned_cols=121  Identities=30%  Similarity=0.402  Sum_probs=108.2

Q ss_pred             hhcCeEEEEcCCCcEEEE-EecccccchhhcccCCeeEEEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCC
Q 027372           86 MFEDECILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYR  163 (224)
Q Consensus        86 m~eE~~~vvD~~d~~iG~-~~R~~~Hl~~~i~~~gllHra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~g  163 (224)
                      |++|.|||||++|+++|. ..|..||.      .|++||+|+|||||. +|+||||||+..|.+|||+||++||||+++|
T Consensus         1 ~~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aG   74 (770)
T PLN02791          1 MMEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAG   74 (770)
T ss_pred             CCceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCC
Confidence            567899999999999998 68989995      699999999999996 6999999999999999999999999999999


Q ss_pred             CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcc-cCCCeeeeeeeeeC
Q 027372          164 ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHERNVFI  224 (224)
Q Consensus       164 Es~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~-~~~~wgEhEidyil  224 (224)
                      |+         +.+||+|||+||+||.+   +.+++.+++.+.+... .++.|+|||++|||
T Consensus        75 Es---------~~eAA~REL~EELGI~l---~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VY  124 (770)
T PLN02791         75 DT---------SLLSAQRELEEELGIIL---PKDAFELLFVFLQECVINDGKFINNEYNDVY  124 (770)
T ss_pred             CC---------HHHHHHHHHHHHhCCCC---ChhheeeeeeEEEEeeccCCCcceeeEEEEE
Confidence            99         68999999999999985   3457888998876643 45679999999986

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.95  E-value=8.9e-28  Score=201.95  Aligned_cols=122  Identities=34%  Similarity=0.515  Sum_probs=101.5

Q ss_pred             hhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCC
Q 027372           85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE  164 (224)
Q Consensus        85 lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gE  164 (224)
                      ||.+|.|+|||+||+++|.++|+.+|+     .+|++|++++|+|+|++|+|||+||+..|..|||+|++++|||+++||
T Consensus         2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE   76 (184)
T PRK03759          2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE   76 (184)
T ss_pred             CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence            466789999999999999999999995     369999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       165 s~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      +         +.+||+||+.|||||.+..+.    .+++.+.|.....++...++++++|
T Consensus        77 t---------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vf  123 (184)
T PRK03759         77 S---------LEDAVIRRCREELGVEITDLE----LVLPDFRYRATDPNGIVENEVCPVF  123 (184)
T ss_pred             C---------HHHHHHHHHHHHhCCCccccc----cccceEEEEEecCCCceeeEEEEEE
Confidence            9         799999999999999885321    2344555544433344566666553

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.95  E-value=1e-27  Score=197.68  Aligned_cols=118  Identities=54%  Similarity=0.842  Sum_probs=103.8

Q ss_pred             cCeEEEEcCCCcEEEEEecccccchhhcccCCee-EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCCh
Q 027372           88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE  166 (224)
Q Consensus        88 eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gll-Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~  166 (224)
                      +|.++|||++++++|.++|+.+|.      +|++ |++|+++|+|++|++||+||+..|..|||.|++++|||+++||+ 
T Consensus         1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt-   73 (165)
T cd02885           1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG-   73 (165)
T ss_pred             CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC-
Confidence            479999999999999999999885      5788 99999999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       167 ~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                              +.+||+||++|||||.+....   +. ++.+.|..+..+.+.++++.|+|
T Consensus        74 --------~~eaa~REl~EEtGl~~~~~~---~~-~~~~~~~~~~~~~~~~~~i~~~f  119 (165)
T cd02885          74 --------VKDAAQRRLREELGITGDLLE---LV-LPRFRYRAPDDGGLVEHEIDHVF  119 (165)
T ss_pred             --------HHHHHHHHHHHHhCCCccchh---hc-cceEEEEEEcCCCceeeEEEEEE
Confidence                    799999999999999976432   22 47788877766677788887765

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.94  E-value=5.6e-27  Score=192.81  Aligned_cols=113  Identities=55%  Similarity=0.852  Sum_probs=96.0

Q ss_pred             EEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhh
Q 027372           91 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEE  170 (224)
Q Consensus        91 ~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~  170 (224)
                      ++|||+||+++|..+|+.+|.     ..|++|++++++|+|.+|++|||||+.+|..|||+|++++|||++.||+     
T Consensus         1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~-----   70 (158)
T TIGR02150         1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL-----   70 (158)
T ss_pred             CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----
Confidence            589999999999999999985     3699999999999999999999999999999999999999999999995     


Q ss_pred             hhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          171 NALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       171 ~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                            +||+||++|||||.+..+   ++..++.+.|.....  ++.++++++|
T Consensus        71 ------eaa~REl~EE~Gl~~~~~---~l~~~~~~~~~~~~~--~g~~~~~~~f  113 (158)
T TIGR02150        71 ------EAAIRRLREELGIPADDV---PLTVLPRFSYRARDA--WGEHELCPVF  113 (158)
T ss_pred             ------HHHHHHHHHHHCCCcccc---ceEEcceEEEEEecC--CCcEEEEEEE
Confidence                  799999999999998653   255666666665432  2356776654

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.92  E-value=2.9e-25  Score=186.82  Aligned_cols=109  Identities=26%  Similarity=0.340  Sum_probs=96.8

Q ss_pred             HHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccC
Q 027372           81 VQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHP  160 (224)
Q Consensus        81 ~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~  160 (224)
                      +|+.+|..|.++|||+||+++|.++|..+|.      +|+.|+++.++|+|++|++|||+|+..+..+||+|+.++|||+
T Consensus         2 ~~~~~~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~v   75 (180)
T PRK15393          2 EQRRLASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVV   75 (180)
T ss_pred             CCCCCCCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence            5888999999999999999999999998884      6999999999999999999999999999889999998889999


Q ss_pred             CCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEc
Q 027372          161 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA  209 (224)
Q Consensus       161 ~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a  209 (224)
                      ++||+         +.+||+|||.|||||....     +.+++.+.|..
T Consensus        76 e~GEs---------~~eAA~REL~EEtGl~~~~-----~~~~~~~~~~~  110 (180)
T PRK15393         76 QAGEQ---------LLESARREAEEELGIAGVP-----FAEHGQFYFED  110 (180)
T ss_pred             CCCCC---------HHHHHHHHHHHHHCCCCcc-----ceeceeEEecC
Confidence            99999         7999999999999998643     34456555543

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=3.5e-21  Score=154.55  Aligned_cols=91  Identities=30%  Similarity=0.456  Sum_probs=75.3

Q ss_pred             eEEEEEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          121 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       121 lHra~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      +||+|+|+|+|.+   ++||+|||+..|..|||.|++++|||++.||+         +.+||+|||.|||||.++.   .
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~~---~   68 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVSA---D   68 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCCh---H
Confidence            6999999999988   89999999999999999999988999999999         7999999999999998642   4


Q ss_pred             ceeeeeEEEEEcccCCCeeeeeeeee
Q 027372          198 EFTPLGRILYKAPSDGKWGEHERNVF  223 (224)
Q Consensus       198 ~l~~lgri~Y~a~~~~~wgEhEidyi  223 (224)
                      ++.+++.+.+....++....+++.++
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T cd04692          69 DLIPLGTFKIEYDHIGKLIDREFHHV   94 (144)
T ss_pred             HeEEeeEEEEeccccCCCccceEEEE
Confidence            57788888776542333344454443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=5.1e-18  Score=133.45  Aligned_cols=74  Identities=36%  Similarity=0.449  Sum_probs=65.4

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      |+|+|+++|++|+||||||+..+.++||+|+++.|||+++||+         +.+||+||++||+||++.     .+..+
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~l~~~   66 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGV-----QLTPL   66 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCcc-----ccEEe
Confidence            5899999999999999999999988999999977999999999         799999999999999875     45667


Q ss_pred             eEEEEEcc
Q 027372          203 GRILYKAP  210 (224)
Q Consensus       203 gri~Y~a~  210 (224)
                      +.+.|...
T Consensus        67 ~~~~~~~~   74 (126)
T cd04697          67 GLFYYDTD   74 (126)
T ss_pred             eEEEecCC
Confidence            77766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1.9e-17  Score=129.39  Aligned_cols=74  Identities=38%  Similarity=0.525  Sum_probs=64.0

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      ++|.++++|++|++|||||+..|..+||+|++++|||++.||+         + +||+||++|||||.+..   ..+.++
T Consensus         1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~---~~~~~~   67 (127)
T cd04693           1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDF---SELRPL   67 (127)
T ss_pred             CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcCh---hhcEEE
Confidence            4688999999999999999999989999999999999999999         8 99999999999999753   245566


Q ss_pred             eEEEEEc
Q 027372          203 GRILYKA  209 (224)
Q Consensus       203 gri~Y~a  209 (224)
                      +++.|..
T Consensus        68 ~~~~~~~   74 (127)
T cd04693          68 FRYFFEA   74 (127)
T ss_pred             EEEEeec
Confidence            6665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.68  E-value=2.1e-16  Score=125.99  Aligned_cols=61  Identities=21%  Similarity=0.258  Sum_probs=56.7

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +|+|.+++++.+|++||+||+..|..|||+|++| |||+++||+         +.+||+||++|||||.+.
T Consensus         3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~   63 (141)
T PRK15472          3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLL   63 (141)
T ss_pred             ceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCcee
Confidence            5788999998899999999999888999999999 899999999         799999999999999864

>PLN02839 nudix hydrolase

Probab=99.66  E-value=5.4e-16  Score=144.71  Aligned_cols=120  Identities=13%  Similarity=0.035  Sum_probs=98.0

Q ss_pred             hcCeEEEEcC-CCcEEEEEecccccchhhcccCCeeEEEEEEEEEe---CCCeEEEEEecCCCCCCCCceeecCCccCCC
Q 027372           87 FEDECILVDE-NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN---SKYELLLQQRSGTKVTFPLVWTNTCCSHPLY  162 (224)
Q Consensus        87 ~eE~~~vvD~-~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn---~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~  162 (224)
                      .+|.+.|++. ++.+...++|..+-+      .|+.-.++|+--+-   .+++||++||+.+|.+|||+|||+++|++.+
T Consensus       173 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~a  246 (372)
T PLN02839        173 RNELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPH  246 (372)
T ss_pred             ccCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccC
Confidence            4788999975 457999999998665      58999999876542   3347999999999999999999999999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ||+         +.++++||+.||+||+.+.+  ..+...|.+.|....+.+ ..+|+-|+|
T Consensus       247 Ges---------p~etliREa~EEAgLp~~l~--~~~~~~G~VsY~~~~~~g-~~~evly~Y  296 (372)
T PLN02839        247 GIS---------CGENLVKECEEEAGISKAIA--DRAIAVGAVSYMDIDQYC-FKRDVLFCY  296 (372)
T ss_pred             CCC---------HHHHHHHHHHHHcCCCHHHH--hcceEeEEEEEEEEcCCc-cccCEEEEe
Confidence            999         79999999999999997653  478899999998665543 345555553

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.64  E-value=1e-15  Score=117.49  Aligned_cols=88  Identities=32%  Similarity=0.400  Sum_probs=74.3

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      +|++++++|+|++|++||.||...+..++++|.++ ||+++.+|+         +.+||+||+.||+|+.+.     ...
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~-----~~~   65 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVS-----PLE   65 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEE-----EEE
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceec-----ccc
Confidence            69999999999999999999999988899999998 999999999         799999999999999974     346


Q ss_pred             eeeEEEEEcccCCCeeeeeeeee
Q 027372          201 PLGRILYKAPSDGKWGEHERNVF  223 (224)
Q Consensus       201 ~lgri~Y~a~~~~~wgEhEidyi  223 (224)
                      .++.+.|..+.+..+..+.+.|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~   88 (134)
T PF00293_consen   66 LLGLFSYPSPSGDPEGEIVIFFI   88 (134)
T ss_dssp             EEEEEEEEETTTESSEEEEEEEE
T ss_pred             cceeeeecccCCCcccEEEEEEE
Confidence            77778888776654444444443

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=3.6e-15  Score=121.79  Aligned_cols=90  Identities=24%  Similarity=0.328  Sum_probs=68.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      +|+++++|.+|+|||+||+..+..|||+|++| |||+++||+         +.+||+||+.||+||.+...+ ..+++++
T Consensus         3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~-~~~~~l~   71 (143)
T cd04694           3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPID-KSWQVLG   71 (143)
T ss_pred             EEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCccccc-cceeEEe
Confidence            68899999999999999999888899999999 999999999         799999999999999876432 1245666


Q ss_pred             EEEEEcc--cCC--CeeeeeeeeeC
Q 027372          204 RILYKAP--SDG--KWGEHERNVFI  224 (224)
Q Consensus       204 ri~Y~a~--~~~--~wgEhEidyil  224 (224)
                      .+.+..+  ...  .+.+|++.|++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~y~~   96 (143)
T cd04694          72 LWESVYPPLLSRGLPKRHHIVVYIL   96 (143)
T ss_pred             eeccccccccCCCcccceeEEEEEE
Confidence            5433222  112  23466666653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=3.3e-15  Score=116.20  Aligned_cols=60  Identities=25%  Similarity=0.357  Sum_probs=53.9

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCC-CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~-K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      |.++.++++++ |++||+||+.. +..|||+|+++ ||+++.||+         +.+||+||+.|||||.++
T Consensus         1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~   61 (122)
T cd04682           1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLP   61 (122)
T ss_pred             CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccc
Confidence            55677777766 99999999987 88999999998 999999999         799999999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1e-14  Score=113.65  Aligned_cols=66  Identities=21%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      +|.++|+|++|++||+||+..+  ++|.|++| |||++.||+         +.+||.||++||+|+.+..     +.+++
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~~   65 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTE-----LSYLF   65 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccc-----eeEEE
Confidence            6889999999999999998754  68999998 999999999         7999999999999998753     34555


Q ss_pred             EEE
Q 027372          204 RIL  206 (224)
Q Consensus       204 ri~  206 (224)
                      .+.
T Consensus        66 ~~~   68 (130)
T cd04681          66 SLP   68 (130)
T ss_pred             eec
Confidence            543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=7.8e-14  Score=107.35  Aligned_cols=71  Identities=24%  Similarity=0.308  Sum_probs=56.9

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.++|++ +|++||+||...+. ++|+|++| ||+++.||+         +.+||+||+.|||||.+.   ..++.+++
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~---~~~~~~~~   66 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLD---PEDLRLAH   66 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccC---hhheEEEE
Confidence            46677766 58999999987653 59999999 999999999         799999999999999875   23456677


Q ss_pred             EEEEEc
Q 027372          204 RILYKA  209 (224)
Q Consensus       204 ri~Y~a  209 (224)
                      .+++..
T Consensus        67 ~~~~~~   72 (120)
T cd04683          67 TMHRRT   72 (120)
T ss_pred             EEEecC
Confidence            665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.52  E-value=8.8e-14  Score=106.99  Aligned_cols=67  Identities=24%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.++|+++ +++||.||+..+  ++|.|.++ |||++.||+         +.+||+||++||+|+.+..     +.+++
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~   63 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEI-----GRRLG   63 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeec-----ceeee
Confidence            456677876 899999998765  78999999 999999999         7999999999999998753     34566


Q ss_pred             EEEEE
Q 027372          204 RILYK  208 (224)
Q Consensus       204 ri~Y~  208 (224)
                      .+.+.
T Consensus        64 ~~~~~   68 (128)
T cd04684          64 SASRY   68 (128)
T ss_pred             EEEEE
Confidence            55443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.51  E-value=9.2e-14  Score=113.92  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             EEEEEEEEEeCC--CeEEEEEecCCCCCCCCceeecCCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~--g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~g-Es~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      |.+|.++|++.+  +++||+||+..+..+||+|++| |||++.| |+         +.+||+||++||||+.+..
T Consensus         2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~   66 (157)
T cd03426           2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS   66 (157)
T ss_pred             ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc
Confidence            568889999876  5899999999988899999999 9999999 99         7999999999999998753

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=8.3e-14  Score=108.88  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             EEEEEEEEeC--CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~--~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      |.++|+++|.  +|++||+||+..   +||.|+++ |||++.||+         +.+||+||++||+||.+.
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~   60 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPE   60 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChh
Confidence            6789999998  899999999876   89999987 999999999         799999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=1.4e-13  Score=106.99  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +.++.++|+|.+|++||++|...  .++|.|++| |||++.||+         +.+||+||++|||||.+..
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~   61 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHS   61 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCccc
Confidence            46788999999999999999854  358999999 999999999         7999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.50  E-value=1.4e-13  Score=108.25  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      ++..++|.++ |++||++|+..+  ++|.|.++ |||++.||+         +.+||+||+.||+||.+..     +.++
T Consensus         2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~   63 (137)
T cd03427           2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDN-----LKLV   63 (137)
T ss_pred             eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeec-----ceEE
Confidence            4566777775 899999999876  89999999 999999999         7999999999999998753     3556


Q ss_pred             eEEEEEccc
Q 027372          203 GRILYKAPS  211 (224)
Q Consensus       203 gri~Y~a~~  211 (224)
                      +.+.|..+.
T Consensus        64 ~~~~~~~~~   72 (137)
T cd03427          64 GIIKFPFPG   72 (137)
T ss_pred             EEEEEEcCC
Confidence            777766543

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.50  E-value=1.4e-13  Score=114.90  Aligned_cols=62  Identities=21%  Similarity=0.226  Sum_probs=54.8

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..++-++.++|++.+|++||+||+..  .++|+|++| ||++++||+         +.+||+||++|||||.+.
T Consensus        14 ~~~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~   75 (159)
T PRK15434         14 STPLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLP   75 (159)
T ss_pred             CCceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            34556889999998999999999853  478999999 999999999         799999999999999864

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.48  E-value=2.3e-13  Score=110.29  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      .++.++|+|.+|++||+||...  .++|+|.+| ||+++.||+         +.+||+||++||+||.+..   .++.++
T Consensus        13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~---~~~~~l   77 (144)
T cd03430          13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLI---SDAELL   77 (144)
T ss_pred             EEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCccc---ccceEE
Confidence            4788999999999999999864  479999999 999999999         7999999999999998753   223455


Q ss_pred             eEEE
Q 027372          203 GRIL  206 (224)
Q Consensus       203 gri~  206 (224)
                      +.+.
T Consensus        78 ~~~~   81 (144)
T cd03430          78 GVFE   81 (144)
T ss_pred             EEEE
Confidence            5543

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=1.9e-13  Score=106.42  Aligned_cols=59  Identities=34%  Similarity=0.418  Sum_probs=53.1

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +++.++.++++|.++++||++|+..     |.|++| ||+++.||+         +.+||+||++||+||.+..
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~   63 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEE   63 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeee
Confidence            4677889999999999999999754     789999 999999999         7999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=3.3e-13  Score=103.95  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++.++|+|++|++||+||...+..++|+|++| ||+++.||+         +.+||+||++||+|+.+..
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~   62 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTP   62 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEe
Confidence            56778888879999999998887789999999 999999999         7899999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=4e-13  Score=104.83  Aligned_cols=60  Identities=30%  Similarity=0.484  Sum_probs=54.0

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +.++.++|+|++|++||+||...  .++|.|+++ |||++.||+         +.+||+||++||+|+.+..
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~   61 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIEN   61 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccc
Confidence            35789999999999999999875  478999999 999999999         7999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=3.9e-13  Score=102.80  Aligned_cols=69  Identities=25%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.++|+++ |++||+||...  .++|.|.++ |||++.||+         +.+||+||++||||+.+..     +.+++
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~   63 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEV-----GRLLT   63 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeee-----ceeEE
Confidence            466777875 89999999753  478999998 999999999         7999999999999999753     34566


Q ss_pred             EEEEEcc
Q 027372          204 RILYKAP  210 (224)
Q Consensus       204 ri~Y~a~  210 (224)
                      .+.+..+
T Consensus        64 ~~~~~~~   70 (122)
T cd04673          64 VVDVIER   70 (122)
T ss_pred             EEEEeec
Confidence            5555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=3.8e-13  Score=104.81  Aligned_cols=58  Identities=16%  Similarity=0.351  Sum_probs=51.1

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      .++.++|+|++|++||+||..    ++|.|.++ |||+++||+         +.+||+||++|||||.+..+
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~   60 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDI   60 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCccccc
Confidence            357889999899999998752    67999999 999999999         79999999999999988643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.46  E-value=3.2e-13  Score=104.24  Aligned_cols=69  Identities=32%  Similarity=0.313  Sum_probs=56.5

Q ss_pred             EEEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          124 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       124 a~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      ++.+++++.+   ++|||+||...     |.|++| |||++.||+         +.+||+||++||+|+.+..     +.
T Consensus         3 ~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~-----~~   62 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEV-----GD   62 (131)
T ss_pred             eEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEe-----cc
Confidence            5677778775   89999999753     899999 999999999         7999999999999998753     34


Q ss_pred             eeeEEEEEcccC
Q 027372          201 PLGRILYKAPSD  212 (224)
Q Consensus       201 ~lgri~Y~a~~~  212 (224)
                      +++.+.|..+..
T Consensus        63 ~~~~~~~~~~~~   74 (131)
T cd03673          63 PLGTIRYWFSSS   74 (131)
T ss_pred             eEEEEEEeccCC
Confidence            677777766543

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.45  E-value=5.9e-13  Score=107.31  Aligned_cols=73  Identities=23%  Similarity=0.260  Sum_probs=59.4

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCce
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  199 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l  199 (224)
                      +.-+++.++|+|.+|++||.||....  .+|.|++| ||++++||+         +.+||+||++||||+.+..     +
T Consensus        11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~   73 (142)
T cd04700          11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRP-----V   73 (142)
T ss_pred             eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeec-----c
Confidence            56688999999999999988876542  58999999 999999999         7999999999999999753     2


Q ss_pred             eeeeEEEEEc
Q 027372          200 TPLGRILYKA  209 (224)
Q Consensus       200 ~~lgri~Y~a  209 (224)
                      .+++.+.+..
T Consensus        74 ~~~~~~~~~~   83 (142)
T cd04700          74 KFLGTYLGRF   83 (142)
T ss_pred             EEEEEEEEEc
Confidence            4555554443

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.45  E-value=3.5e-13  Score=106.14  Aligned_cols=70  Identities=19%  Similarity=0.165  Sum_probs=58.2

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      |+++.++++|++|++||.+|...+ ..++.|++| ||+++.||+         +.+||+||++||+||.+.     .+..
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~-----~~~~   65 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAG-----DLEK   65 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCcc-----ceEE
Confidence            578999999999999998765544 368899998 999999999         799999999999999985     3456


Q ss_pred             eeEEEE
Q 027372          202 LGRILY  207 (224)
Q Consensus       202 lgri~Y  207 (224)
                      ++.+.+
T Consensus        66 ~~~~~~   71 (137)
T cd03424          66 LGSFYP   71 (137)
T ss_pred             EeeEec
Confidence            665544

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.45  E-value=2.9e-13  Score=108.73  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  191 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~  191 (224)
                      .+-++.++++|.+|++||.||..    .||.|+++ |||++.||+         +.+||+|||+|||||.+
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~   62 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDV   62 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCc
Confidence            34578889999999999998864    37999998 999999999         79999999999999987

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=5.3e-13  Score=103.83  Aligned_cols=55  Identities=31%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       127 v~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ++|+++ |++||+||+..+..+||+|+++ ||+++.||+         +.+||+||+.||+|+.+.
T Consensus         5 ~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~   59 (117)
T cd04691           5 GVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPL   59 (117)
T ss_pred             EEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCcc
Confidence            345554 8999999998887799999998 999999999         799999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.43  E-value=9.7e-13  Score=106.11  Aligned_cols=59  Identities=24%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +|.++.++|+|.+|++||+||+..+    ++|++| |||+++||+         +.+||+||++|||||.+..
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~   60 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDS   60 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCc
Confidence            3568899999999999999998765    899999 999999999         7999999999999999753

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=1.3e-12  Score=101.55  Aligned_cols=81  Identities=26%  Similarity=0.256  Sum_probs=59.7

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      |-.+.++|++ +|++||+||..     .+.|.+| |||++.||+         +.+||+||++||||+.+..     ..+
T Consensus         1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~   59 (125)
T cd04689           1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF   59 (125)
T ss_pred             CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence            3456677774 68999999853     2689999 999999999         7999999999999998753     356


Q ss_pred             eeEEEEEcccCCCeeeeeeeeeC
Q 027372          202 LGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       202 lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ++.+.+..+..+. ..|++.|+|
T Consensus        60 l~~~~~~~~~~~~-~~~~~~~~f   81 (125)
T cd04689          60 LGAIENQWHEKGV-RTHEINHIF   81 (125)
T ss_pred             EEEEeeeeccCCc-eEEEEEEEE
Confidence            6766555444333 346666553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=1.9e-12  Score=104.19  Aligned_cols=60  Identities=28%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      |+++++++|.+|++||++|...+..+++.|.++ |||++.||+         +.+||+||+.||+|+.+.
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~   60 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVA   60 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            578999999999999999987665578999998 999999999         799999999999999983

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=1e-12  Score=100.42  Aligned_cols=66  Identities=23%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      +++++++|.+|++||+||+..     +.|.+| ||+++.||+         +.+||+||++||+|+.+..    .+.+++
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~----~~~~~~   62 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAV----VAELLG   62 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccc----ccceEE
Confidence            478899999999999998753     389999 999999999         7999999999999999861    234555


Q ss_pred             EEEEE
Q 027372          204 RILYK  208 (224)
Q Consensus       204 ri~Y~  208 (224)
                      .+.+.
T Consensus        63 ~~~~~   67 (120)
T cd04680          63 VYYHS   67 (120)
T ss_pred             EEecC
Confidence            55443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.40  E-value=2.5e-12  Score=98.42  Aligned_cols=69  Identities=22%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      .+.+++++.+|++||.||..     .|.|.+| ||+++++|+         +.+||+||++||||+.+..   ..+.+++
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~   63 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLG   63 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence            35677888899999988864     3689998 999999999         7999999999999998742   2367777


Q ss_pred             EEEEEcc
Q 027372          204 RILYKAP  210 (224)
Q Consensus       204 ri~Y~a~  210 (224)
                      .+.+...
T Consensus        64 ~~~~~~~   70 (118)
T cd04690          64 TFRAPAA   70 (118)
T ss_pred             EEecccc
Confidence            7765433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.40  E-value=3.3e-12  Score=99.54  Aligned_cols=57  Identities=26%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      -++.++|+|.+|++||.||...   ++|+|.+| |||++.||+         +.+||+||++||+||...
T Consensus         3 ~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~   59 (127)
T cd04670           3 VGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTE   59 (127)
T ss_pred             eEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCcc
Confidence            4567889999999999887654   78999999 999999999         799999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=2.7e-12  Score=100.40  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++.++|++ +|++||+||...   .++.|.+| |||++.||+         +.+||+||+.||||+.+..
T Consensus         3 ~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~   58 (128)
T cd04687           3 SAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEI   58 (128)
T ss_pred             EEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcccc
Confidence            45666665 589999999653   35789999 999999999         7999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=1.1e-12  Score=104.71  Aligned_cols=57  Identities=30%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             EEEEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      |.+++++++|++ +++||.||+.     .|.|..| |||+++||+         +.+||+||++||+|+.+..
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~   59 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLG   59 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCccc
Confidence            889999999987 8999998865     4899998 999999999         7999999999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.39  E-value=2.7e-12  Score=105.59  Aligned_cols=60  Identities=22%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      -+|.++.++++|.+|++||+||+..    |+.|++| |||++.||+         +.+||.||+.||||+.+..
T Consensus         6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~   65 (156)
T PRK00714          6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPED   65 (156)
T ss_pred             CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccc
Confidence            3778999999999999999999842    6899999 999999999         7999999999999998753

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=2.4e-12  Score=95.87  Aligned_cols=69  Identities=20%  Similarity=0.277  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      +++++++|.++++||+||...   ++|+|.++ ||+++.+|+         +.++|+||+.||+|+.+..     ..+++
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~   63 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG   63 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence            567888888899999999977   78999999 999999999         7899999999999998742     23445


Q ss_pred             EEEEEcc
Q 027372          204 RILYKAP  210 (224)
Q Consensus       204 ri~Y~a~  210 (224)
                      .+.|..+
T Consensus        64 ~~~~~~~   70 (123)
T cd02883          64 VYEVESP   70 (123)
T ss_pred             EEEeecc
Confidence            5555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=3.2e-12  Score=99.53  Aligned_cols=55  Identities=25%  Similarity=0.309  Sum_probs=47.9

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ||++.+++.|  +++||+||..     .+.|.++ |||++.||+         +.+||+||+.||||+.+..
T Consensus         2 ~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~   56 (126)
T cd04688           2 VRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEI   56 (126)
T ss_pred             eEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceec
Confidence            7888887754  5999999875     5799999 999999999         7999999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.37  E-value=4.9e-12  Score=97.15  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.++|.|.+|++||+||+... .++|+|++| ||+++.||+         ..+||+||+.||+|+.+.
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~   63 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQ   63 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcee
Confidence            3445567788899999998765 489999999 999999999         689999999999999864

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.35  E-value=4.1e-12  Score=97.13  Aligned_cols=54  Identities=22%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ++.++++|++|++||+||...     |+|++| |||++.||+         +.+||+||++||+|+.+.
T Consensus         4 ~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~   57 (129)
T cd04676           4 GVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVE   57 (129)
T ss_pred             eEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeE
Confidence            577888898899999999864     899999 999999999         789999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.35  E-value=5.5e-12  Score=95.34  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.++|+|++|++||+||+..+ .++|+|+++ ||++..+|+         +.++|+||+.||+|+.+..     ..+++
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~   66 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA   66 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence            3456677887999999999887 689999998 999999999         7899999999999998753     23455


Q ss_pred             EEEEEc
Q 027372          204 RILYKA  209 (224)
Q Consensus       204 ri~Y~a  209 (224)
                      .+.+..
T Consensus        67 ~~~~~~   72 (124)
T cd03425          67 TVEHDY   72 (124)
T ss_pred             EEEeeC
Confidence            554443

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.33  E-value=3.9e-12  Score=100.54  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++.++++|.+|++||+||...  .+++.|.+| |||++.||+         +.+||+||++||||+.+..
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~   59 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEP   59 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeec
Confidence            577888999999999999753  368999999 999999999         7999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.31  E-value=4.1e-12  Score=101.00  Aligned_cols=57  Identities=21%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +|.++|+|.++++||+||...   .+|.|+++ |||++.||+         +.+||+||++|||||.+..
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~   58 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN   58 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee
Confidence            577888988899999999642   26899998 999999999         7999999999999999753

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.30  E-value=2.4e-11  Score=95.25  Aligned_cols=54  Identities=28%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             EEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       129 lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      |++.+|++||+||...+ .++|+|.+| ||+++.||+         +.+|++||+.||+|+.+..
T Consensus        10 ii~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~   63 (135)
T PRK10546         10 IIERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATV   63 (135)
T ss_pred             EEecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccc
Confidence            33567899999998765 489999999 999999999         6889999999999998753

>PLN02325 nudix hydrolase

Probab=99.30  E-value=1.9e-11  Score=99.40  Aligned_cols=60  Identities=25%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ...++.++|++. |+|||+||+...  .-|.|.++ |||++.||+         +.+||+||++|||||.+..
T Consensus         8 p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~   67 (144)
T PLN02325          8 PRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEK   67 (144)
T ss_pred             CeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcc
Confidence            456677788764 799999998643  34899999 999999999         7999999999999998764

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=99.29  E-value=8.6e-12  Score=111.72  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             cCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEE--EEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCC
Q 027372           88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLY  162 (224)
Q Consensus        88 eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv--~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~  162 (224)
                      .|...+| .+.+++-.++|....+      .|.+.-++++  +|.+++-   ++|++|||.+|.||||+|||.++|.+..
T Consensus       104 ne~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~  176 (306)
T KOG4313|consen  104 NELYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSV  176 (306)
T ss_pred             ceeeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhcccccc
Confidence            4567777 8889999999987665      4777777765  5666553   6999999999999999999999999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      |-.         +.++|++|..||..|+.+.  ..+|...|.+.|..--...|...|..|||
T Consensus       177 g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~~~~pe~qYVf  227 (306)
T KOG4313|consen  177 GFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQGLFPETQYVF  227 (306)
T ss_pred             Cch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhhccCccceEEE
Confidence            999         8999999999999999843  36889999998875334567777888886

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.28  E-value=3.4e-11  Score=94.48  Aligned_cols=55  Identities=25%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +.+++. .++++||.||...   .+++|.++ ||++++||+         +.+||+||++||+|+.+..
T Consensus         3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~   57 (134)
T cd03675           3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEP   57 (134)
T ss_pred             EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCccccc
Confidence            344444 5689999998654   56899999 999999999         7999999999999998753

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.27  E-value=1.3e-11  Score=95.95  Aligned_cols=56  Identities=30%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             EEEEEEEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          123 RAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       123 ra~sv~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      +++.+++|+.++   ++||.||+.      |.|++| |||++.||+         +.+||+||++||+|+.+..+
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~   61 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQL   61 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhh
Confidence            567777777554   688888875      889999 999999999         79999999999999998643

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.27  E-value=2.9e-11  Score=94.15  Aligned_cols=53  Identities=13%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.++|+++ |++||.||..     .|.|.++ ||+++.||+         +.+||+||++||+|+.+.
T Consensus         4 ~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~   56 (123)
T cd04672           4 DVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVK   56 (123)
T ss_pred             eEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeee
Confidence            467788876 8988888764     5899999 999999999         799999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.25  E-value=2.7e-11  Score=94.74  Aligned_cols=56  Identities=25%  Similarity=0.259  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++++|++++|++||+||....   .++|.+| ||+++.||+         +.+||+||++||||+.+..
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~   58 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPG---KTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRV   58 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecCC---CCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEee
Confidence            356677777999999997542   5899999 999999999         7999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.23  E-value=9e-11  Score=90.63  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .++.+++++.+|++||+||.... .+.|+|++| ||+++.||+         +.+|++||+.||+|+.+.
T Consensus         5 ~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~   63 (128)
T TIGR00586         5 QIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQH   63 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcce
Confidence            34455566888899999998765 589999999 999999999         689999999999999864

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.21  E-value=8.9e-11  Score=92.66  Aligned_cols=51  Identities=25%  Similarity=0.355  Sum_probs=45.0

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      +.++++||.||...   ++|.|..| |||++.||+         +.+||+||++||+||.+..+
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~   61 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPEL   61 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccc
Confidence            45679999999865   78999988 999999999         79999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.17  E-value=1.6e-10  Score=94.67  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=51.0

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ...++.+++... |++||.||....  +.|+|.+| ||+++.||+         +.+||.||++|||||.+..
T Consensus         9 p~~~v~~~i~~~-~~iLLvrR~~~p--~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~   68 (145)
T COG1051           9 PLVAVGALIVRN-GRILLVRRANEP--GAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRV   68 (145)
T ss_pred             cceeeeEEEEeC-CEEEEEEecCCC--CCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccc
Confidence            445677777654 599999998764  68999999 999999999         8999999999999999653

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.17  E-value=2.7e-10  Score=90.21  Aligned_cols=68  Identities=28%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             EEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          125 FSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       125 ~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      +.+++++.+   +++||.+|...     +.|.+| |||++.||+         +.+||+||++|||||.....    +.+
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~~   63 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KRP   63 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ceE
Confidence            455555543   57888777532     899999 999999999         79999999999999986432    267


Q ss_pred             eeEEEEEccc
Q 027372          202 LGRILYKAPS  211 (224)
Q Consensus       202 lgri~Y~a~~  211 (224)
                      ++.+.|..+.
T Consensus        64 l~~~~~~~~~   73 (122)
T cd04666          64 LGRFEYRKRS   73 (122)
T ss_pred             EEEEEeeecC
Confidence            8888776653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.16  E-value=9.5e-11  Score=95.62  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +++++++|.+ |++||.||.     .++.|++| ||+++.||+         +.+||+|||+||||+.+..
T Consensus         3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISK   58 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEec-----CCCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCcccee
Confidence            4677888875 699998885     24599999 999999999         7999999999999998764

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.15  E-value=3.4e-10  Score=89.77  Aligned_cols=52  Identities=15%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  191 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~  191 (224)
                      ++.++|+++ |++||.||..     .+.|.+| ||+++.||+         +.+||+||++||||+.+
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCcc
Confidence            466777764 8999988753     2589999 999999999         79999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.12  E-value=2.8e-10  Score=87.23  Aligned_cols=46  Identities=26%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..++++||+||..      |.|.+| ||+++.||+         +.+||.||++||+|+.+.
T Consensus         8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~   53 (112)
T cd04667           8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGL   53 (112)
T ss_pred             ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCccc
Confidence            3568999999863      899999 999999999         799999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.11  E-value=2e-10  Score=90.60  Aligned_cols=56  Identities=20%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ++.+++++. +++||.||....  .+|.|+++ |||++.||+         +.+||+||++||+|+.+.
T Consensus        15 ~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~   70 (130)
T cd04511          15 IVGCVPEWE-GKVLLCRRAIEP--RHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVE   70 (130)
T ss_pred             EEEEEEecC-CEEEEEEecCCC--CCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEE
Confidence            455666764 899999997643  67999999 999999999         799999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.08  E-value=1.4e-09  Score=93.05  Aligned_cols=62  Identities=18%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             CCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEE
Q 027372          132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY  207 (224)
Q Consensus       132 ~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y  207 (224)
                      .++.+|++||+..-..++|.|.+| ||.++++|..        +.+||+||++||+|+.++     .+.+++.+..
T Consensus        42 ~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~--------~~~tA~REl~EEtGl~~~-----~~~~lg~l~~  103 (190)
T PRK10707         42 PQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS--------LIATALREAQEEVAIPPS-----AVEVIGVLPP  103 (190)
T ss_pred             CCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc--------HHHHHHHHHHHHHCCCcc-----ceEEEEEeee
Confidence            345899999998766789999999 9999986432        689999999999999875     4567777753

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.01  E-value=9.3e-10  Score=98.26  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.+.|. .++++||+||...+   +|+|+++ ||++++||+         +.+||+||++||+||.+..     +.+++
T Consensus       134 aViv~V~-~~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~~~  194 (256)
T PRK00241        134 CIIVAVR-RGDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRYVG  194 (256)
T ss_pred             EEEEEEE-eCCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEEEE
Confidence            4445554 45899999986543   7999998 999999999         7999999999999998753     45565


Q ss_pred             EEEE
Q 027372          204 RILY  207 (224)
Q Consensus       204 ri~Y  207 (224)
                      ...|
T Consensus       195 s~~~  198 (256)
T PRK00241        195 SQPW  198 (256)
T ss_pred             eEee
Confidence            5443

>PRK08999 hypothetical protein; Provisional

Probab=98.98  E-value=3.3e-09  Score=95.06  Aligned_cols=59  Identities=24%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..+.++|++.+|++||+||...+ .++|+|++| ||+++.||+         +.+|++||++||+|+.+.
T Consensus         6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~   64 (312)
T PRK08999          6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVT   64 (312)
T ss_pred             EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCcee
Confidence            34455667778999999998765 589999999 999999999         689999999999999865

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=98.97  E-value=3e-09  Score=98.13  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +.++.++|++ +|++||.||....  ++|+|.+| ||++++||+         +.+||+||++|||||.+.
T Consensus       203 ~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~  260 (340)
T PRK05379        203 FVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLP  260 (340)
T ss_pred             ceEEEEEEEE-CCEEEEEEecCCC--CCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            3555666664 6899999998643  58999999 999999999         799999999999999864

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=98.96  E-value=3.3e-09  Score=89.36  Aligned_cols=67  Identities=22%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.|+.+++++++||.|+.... ..++.|.+| ||++++||+         +.+||+|||+||||+.+.     .+.+++
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~-~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~l~~l~  112 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAG-TERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGAR-----QLTFLK  112 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCC-CCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCc-----ceEEEE
Confidence            5667767788888887764322 356789999 999999999         799999999999999875     456777


Q ss_pred             EEE
Q 027372          204 RIL  206 (224)
Q Consensus       204 ri~  206 (224)
                      .++
T Consensus       113 ~~~  115 (185)
T PRK11762        113 ELS  115 (185)
T ss_pred             EEe
Confidence            654

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.95  E-value=8.1e-09  Score=83.93  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=45.7

Q ss_pred             EEEEEEe--C-CCeEEEEEecCC--CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          125 FSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       125 ~sv~lfn--~-~g~lLLqqRs~~--K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..+++++  . ..++||++|...  +..++|.|++| ||+++.||+         +.+||+||+.||||+.+.
T Consensus         3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence            4555554  2 247999887543  22467999999 999999999         799999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=98.91  E-value=2e-09  Score=85.81  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=41.2

Q ss_pred             CCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       132 ~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +++++||.||...+   .|.|++| ||++++||+         +.+||+||+.||||+.+.
T Consensus        11 ~~~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~   58 (132)
T cd04661          11 DDTLVLLVQQKVGS---QNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLK   58 (132)
T ss_pred             cCcEEEEEEeecCC---CCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCce
Confidence            45678888886532   5899999 999999999         799999999999999764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=98.89  E-value=1e-08  Score=76.82  Aligned_cols=55  Identities=27%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~-AA~REL~EElGI~~~  192 (224)
                      ++.+.+.... +++|+++|....    +.|.+| ||+++.+|+.         .. ||+||+.|||||.+.
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~~---------~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEEL---------PEEAAARELEEETGLRVK   69 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCch---------HHHHHHHHHHHHhCCeee
Confidence            3344343333 789999998765    799999 9999999993         55 999999999999986

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.86  E-value=1.5e-08  Score=80.67  Aligned_cols=62  Identities=24%  Similarity=0.278  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeE
Q 027372          125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR  204 (224)
Q Consensus       125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgr  204 (224)
                      |.|++++. +++||.+|.      .+.|.+| ||+++.||+         +.+||+||+.||+|+.+.     .+.+++.
T Consensus         3 v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~-----~~~~l~~   60 (118)
T cd04665           3 VLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELG-----SLTLVGY   60 (118)
T ss_pred             EEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccC-----ceEEEEE
Confidence            45566654 788887774      2579999 999999999         799999999999999974     3567776


Q ss_pred             EEEE
Q 027372          205 ILYK  208 (224)
Q Consensus       205 i~Y~  208 (224)
                      +.+.
T Consensus        61 ~~~~   64 (118)
T cd04665          61 YQVD   64 (118)
T ss_pred             EEec
Confidence            6543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN02709 nudix hydrolase

Probab=98.82  E-value=2.5e-08  Score=88.07  Aligned_cols=67  Identities=19%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CeeEEEEEEEEEeC------CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          119 NLLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       119 gllHra~sv~lfn~------~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +..+-||-+.|+..      +.++||.+|+.....+||.|.+| ||+++++|..        ..+||+||+.||+||+.+
T Consensus        30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~  100 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS  100 (222)
T ss_pred             CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence            34556777777753      22799999999877899999999 9999998653        689999999999999886


Q ss_pred             CC
Q 027372          193 DV  194 (224)
Q Consensus       193 ~v  194 (224)
                      .+
T Consensus       101 ~v  102 (222)
T PLN02709        101 LV  102 (222)
T ss_pred             he
Confidence            43

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.81  E-value=2.6e-08  Score=79.59  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +.+++...++.+|+ +|...  .++|.|.++ ||+++.||+         +.+||+||+.||+|+.+.
T Consensus         7 av~vl~~~~~~lL~-~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           7 VVALLPVDDGLLVI-RRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD   61 (118)
T ss_pred             EEEEEEECCCEEEE-EeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            34445455554555 55542  368999999 999999999         799999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=98.74  E-value=3.3e-08  Score=84.16  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCC----CCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          124 AFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       124 a~sv~lfn~~-g~lLLqqRs~~K~----tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      ++.+++++++ +++||.++-....    .-|..|.+| ||+++.||+         +.+||+|||+||||+.+..     
T Consensus        46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~-----  110 (185)
T TIGR00052        46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN-----  110 (185)
T ss_pred             eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc-----
Confidence            5667777654 6877765432211    136789999 999999999         7999999999999999853     


Q ss_pred             eeeeeEE
Q 027372          199 FTPLGRI  205 (224)
Q Consensus       199 l~~lgri  205 (224)
                      +.+++.+
T Consensus       111 ~~~~~~~  117 (185)
T TIGR00052       111 LRKLLSF  117 (185)
T ss_pred             eEEEEEE
Confidence            4556554

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=98.73  E-value=1e-07  Score=79.86  Aligned_cols=60  Identities=20%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEE
Q 027372          126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  205 (224)
Q Consensus       126 sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri  205 (224)
                      .++..+ ++++||.++..      ..|.+| ||+++.||+         +.+||+|||.||||+.+.     .+.+++.+
T Consensus        28 ~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~-----~~~~lg~~   85 (156)
T TIGR02705        28 LVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVK-----ELHYIGQY   85 (156)
T ss_pred             EEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEee-----eeEEEEEE
Confidence            344343 45777766542      359998 999999999         799999999999999864     56788865


Q ss_pred             EE
Q 027372          206 LY  207 (224)
Q Consensus       206 ~Y  207 (224)
                      ..
T Consensus        86 ~~   87 (156)
T TIGR02705        86 EV   87 (156)
T ss_pred             Ee
Confidence            43

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=98.56  E-value=9.1e-08  Score=88.39  Aligned_cols=59  Identities=25%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      +|-..|.|.+|+.+|..|  .|..-||+|+.. +|.+++||+         +++|++||.+||+||+++.|
T Consensus       189 vVIm~li~~d~~~~LL~R--~~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I  247 (345)
T KOG3084|consen  189 VVIMLLIDHDGKHALLGR--QKRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVI  247 (345)
T ss_pred             eEEEEEEcCCCCEeeeec--ccCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeE
Confidence            455667899997666677  345568999998 999999999         89999999999999998754

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=98.52  E-value=5.2e-07  Score=77.97  Aligned_cols=67  Identities=21%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             EEEEEEEeCC-CeEEEEE--ecCC-C-CCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          124 AFSVFLFNSK-YELLLQQ--RSGT-K-VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       124 a~sv~lfn~~-g~lLLqq--Rs~~-K-~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      ++.|+.++++ ++++|.+  |..- + ...+-.|.+| +|.+++||+         +.+||+|||.||||+.+.     +
T Consensus        51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~-----~  115 (202)
T PRK10729         51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVG-----R  115 (202)
T ss_pred             eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceee-----E
Confidence            5667777764 6866644  3221 0 0013479999 999999999         799999999999999875     3


Q ss_pred             eeeeeEE
Q 027372          199 FTPLGRI  205 (224)
Q Consensus       199 l~~lgri  205 (224)
                      +.+++.+
T Consensus       116 ~~~l~~~  122 (202)
T PRK10729        116 TKPVLSY  122 (202)
T ss_pred             EEEEEEE
Confidence            5566544

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.45  E-value=6.3e-07  Score=72.70  Aligned_cols=51  Identities=22%  Similarity=0.143  Sum_probs=39.1

Q ss_pred             EEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372          125 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  191 (224)
Q Consensus       125 ~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~  191 (224)
                      +.+++.+.++  +||+.|.. .     +.|.+| ||++++||+         +.+||+|||.||||+..
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC-C-----CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence            3455555554  45555443 2     459998 999999999         79999999999999996

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=98.33  E-value=1.8e-06  Score=74.28  Aligned_cols=45  Identities=11%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ++|+.||..     +|.|.+| ||+++++|+         +.+||.|||.||+|+..+.+
T Consensus        50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~   94 (186)
T cd03670          50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKS   94 (186)
T ss_pred             EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHccccccc
Confidence            577888853     5899999 999999999         79999999999998765443

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=98.24  E-value=7.5e-06  Score=70.29  Aligned_cols=66  Identities=12%  Similarity=0.109  Sum_probs=44.5

Q ss_pred             EEEEEEEeC-CCeEEEEEecCCCCC-----CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          124 AFSVFLFNS-KYELLLQQRSGTKVT-----FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       124 a~sv~lfn~-~g~lLLqqRs~~K~t-----fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      ++.|+++++ +++++|.+.=.....     -+-.|.+| +|.++.+ +         +.+||+|||.||||..+.     
T Consensus        47 ~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~-----  110 (191)
T PRK15009         47 GATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVG-----  110 (191)
T ss_pred             EEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccc-----
Confidence            566777776 568776543222110     12367887 7888854 5         589999999999999875     


Q ss_pred             ceeeeeEE
Q 027372          198 EFTPLGRI  205 (224)
Q Consensus       198 ~l~~lgri  205 (224)
                      ++.+++.+
T Consensus       111 ~~~~l~~~  118 (191)
T PRK15009        111 EVRKLFEL  118 (191)
T ss_pred             eEEEeeEE
Confidence            45667655

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.17  E-value=9e-06  Score=61.30  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCC
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI  189 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI  189 (224)
                      +.+.++++..+|++||+||.... .++|+|++| ++.++.+|+         ..++..|++.+|+++
T Consensus         3 ~~~~~~ii~~~~~~ll~kR~~~g-l~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~   58 (118)
T cd03431           3 RGIAVVVIRNDGRVLLEKRPEKG-LLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRL   58 (118)
T ss_pred             EEEEEEEEecCCeEEEEECCCCC-CCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCc
Confidence            34455555667899999997654 589999999 788877777         478888999999864

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=98.16  E-value=2.4e-06  Score=77.83  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++-|.+.+. +++||-+|...   |||+++.. +|.+++||+         +++|..||++||+||.+..     ++|++
T Consensus       146 ~vIv~v~~~-~~ilLa~~~~h---~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~-----vrY~~  206 (279)
T COG2816         146 CVIVAVIRG-DEILLARHPRH---FPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN-----VRYVG  206 (279)
T ss_pred             eEEEEEecC-CceeecCCCCC---CCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----eeEEe
Confidence            444445443 45777676654   59999998 999999999         8999999999999999864     46666


Q ss_pred             EEEEEcc
Q 027372          204 RILYKAP  210 (224)
Q Consensus       204 ri~Y~a~  210 (224)
                      .-.+..|
T Consensus       207 SQPWPfP  213 (279)
T COG2816         207 SQPWPFP  213 (279)
T ss_pred             ccCCCCc
Confidence            5544444

>PLN03143 nudix hydrolase; Provisional

Probab=98.05  E-value=2.2e-05  Score=71.94  Aligned_cols=58  Identities=21%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             EEEEEEE-eCCCe--EEEEEecCCCCCCCCceeecCCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lf-n~~g~--lLLqqRs~~K~tfPG~Wd~t~gGh~~~g-Es~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ++.|++. +.+|+  ++|.++..... -.-.|.+| ||.++.+ |+         +.+||+|||+||||+.+.
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~  191 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPV-GKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLK  191 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            5566554 55565  66666554211 12379999 8999975 67         799999999999999864

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=97.99  E-value=1.5e-05  Score=71.34  Aligned_cols=62  Identities=21%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             EEEEEEEeC-CC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          124 AFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       124 a~sv~lfn~-~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      +|-+.|++. +|  ++||+||+.+-..++|.-.+| ||..++.+..        -..+|.||.+||.|++.+.+
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~  109 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELV  109 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHh
Confidence            455566665 34  699999999999999999999 9999998875        46899999999999998653

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=97.94  E-value=3e-05  Score=64.70  Aligned_cols=62  Identities=24%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             CCeeEEEEEEEEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          118 LNLLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      .|.. .++.|+.+..++   ++||.+-+..    |-.|.+| +||++++|+         +.+||+||..||.|+.....
T Consensus         6 ~G~r-~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~   70 (145)
T KOG2839|consen    6 AGFR-LVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLG   70 (145)
T ss_pred             CCcE-EEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeee
Confidence            3533 344566665544   6787765542    5689999 999999999         79999999999999998654

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=97.61  E-value=3.4e-05  Score=70.89  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ++..+|+|.++++|+.|=-+.-...+|.|-++ +|.+.++|+         +.++|+||++||+||+.+
T Consensus       117 gvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~e  175 (295)
T KOG0648|consen  117 GVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTE  175 (295)
T ss_pred             eeeeeEecCCceeEEEEecccceeeccccccc-ceEeccccc---------chhhhhhhhHHHhCcchh
Confidence            56789999988999866545555679999999 779999999         799999999999998654

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=97.01  E-value=0.0054  Score=54.11  Aligned_cols=54  Identities=19%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             EEeCCCe--EEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          129 LFNSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       129 lfn~~g~--lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +...+|+  ++|++.-... +-.-...+| +|-++.||+         +..||+|||+||+|+....
T Consensus        81 il~~dG~~~ivL~kQfRpP-~Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv  136 (225)
T KOG3041|consen   81 ILESDGKPYIVLVKQFRPP-TGKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKV  136 (225)
T ss_pred             EEecCCcEEEEEEEeecCC-CCcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCcccee
Confidence            4456775  6666532211 111256777 899999999         7999999999999998543

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.32  E-value=0.0093  Score=51.39  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=51.1

Q ss_pred             EEEEEeCCCeEEEEEecCCC--CCCCCceeecCCccCCCCCChhhhhhhhc-HHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          126 SVFLFNSKYELLLQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       126 sv~lfn~~g~lLLqqRs~~K--~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g-~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      .|+|.|.+ ++|+-.|-...  ...-|.+.+-+|||+..++..   ..+.. .+-.+.|||.||+++..++.  .++.++
T Consensus        65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA---~s~~evLk~n~~REleEEv~vseqd~--q~~e~l  138 (203)
T COG4112          65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGA---TSREEVLKGNLERELEEEVDVSEQDL--QELEFL  138 (203)
T ss_pred             EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCc---ccHHHHHccchHHHHHHHhCcCHHHh--hhheee
Confidence            56666655 99999887532  235688999999999998762   11111 33459999999999996653  345666


Q ss_pred             eEE
Q 027372          203 GRI  205 (224)
Q Consensus       203 gri  205 (224)
                      |-|
T Consensus       139 GlI  141 (203)
T COG4112         139 GLI  141 (203)
T ss_pred             eee
Confidence            644

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=96.20  E-value=0.0062  Score=50.66  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       126 sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      -|++..+.|-+|..|       --|.|.++ .|-...||+         +..||+||..||+||.++-
T Consensus        19 ~VLLvHPGGPFWa~k-------D~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG   69 (161)
T COG4119          19 DVLLVHPGGPFWAGK-------DDGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG   69 (161)
T ss_pred             EEEEecCCCCccccC-------CCCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC
Confidence            345555555555522       14899999 889999999         6899999999999999853

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=96.13  E-value=0.0096  Score=45.78  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       127 v~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      +++.+.+|++||+||..+. .+.|+|++|. --.. ++.         ..+++.+.+.+.+|+.+.
T Consensus         2 ~~i~~~~~~~Ll~kRp~~g-ll~GLwefP~-~e~~-~~~---------~~~~l~~~~~~~~~~~~~   55 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKG-LLAGLWEFPL-IESD-EED---------DEEELEEWLEEQLGLSIR   55 (114)
T ss_dssp             EEEEETTSEEEEEE--SSS-TTTT-EE--E-EE-S-SS----------CHHHHHHHTCCSSS-EEE
T ss_pred             EEEEEeCCEEEEEECCCCC-hhhcCcccCE-eCcc-CCC---------CHHHHHHHHHHHcCCChh
Confidence            4678899999999998765 5999999993 2222 332         145566667778888654

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=91.99  E-value=0.32  Score=43.92  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 027372          135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG  188 (224)
Q Consensus       135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElG  188 (224)
                      +++..||.+.     |.|.++ ||.+++||-         +-....||+.||.=
T Consensus       140 e~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence            4566688765     689999 999999999         78999999999973

>PF14443 DBC1: DBC1

Probab=91.79  E-value=0.8  Score=37.69  Aligned_cols=78  Identities=19%  Similarity=0.200  Sum_probs=49.8

Q ss_pred             EEEEEecCCCCCCCCceeec-CCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEccc-CC
Q 027372          136 LLLQQRSGTKVTFPLVWTNT-CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DG  213 (224)
Q Consensus       136 lLLqqRs~~K~tfPG~Wd~t-~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~-~~  213 (224)
                      +|+-+|...-.--.|-|+.. =||.|..+.+.        ...+|+|=+++-+||+...-. .-.+|+ .+||..+. ++
T Consensus        10 Flv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct-~W~rf~-Ei~Y~R~~~~~   79 (126)
T PF14443_consen   10 FLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCT-QWYRFA-EIHYYRPGSDG   79 (126)
T ss_pred             eEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcC-ccceee-EEEEecCCCCC
Confidence            44444443211225789887 47788777665        689999999999999997532 445555 56666554 34


Q ss_pred             Ceeeeeeeee
Q 027372          214 KWGEHERNVF  223 (224)
Q Consensus       214 ~wgEhEidyi  223 (224)
                      .....|+.-|
T Consensus        80 ~~~~~EivVl   89 (126)
T PF14443_consen   80 FPSHQEIVVL   89 (126)
T ss_pred             CCceeEEEEE
Confidence            4455565443

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=87.70  E-value=1.4  Score=38.43  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             ccCCeeEEEEEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          116 ESLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       116 ~~~gllHra~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.|+.+.+-+|+|....+  .|||-|....      .|-++ ||...+||++         .+...|+|.+-+|....
T Consensus        38 ~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~e---------~~gLkrkL~~~l~~~~~  100 (188)
T PF13869_consen   38 EKEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGEDE---------IEGLKRKLTEKLSPEDG  100 (188)
T ss_dssp             HHHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT--H---------HHHHHHHHHHHHB-SSS
T ss_pred             HHhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCCh---------hHHHHHHHHHHcCCCcC
Confidence            3468887777888888777  4666665543      46677 8999999994         89999999999998753

...

>PRK10880 adenine DNA glycosylase; Provisional

Probab=85.93  E-value=2.8  Score=39.60  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=26.1

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT  155 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t  155 (224)
                      ..+...++++..+|++||+||.... .+.|+|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~l~~r~~~g-l~~gl~~fP  262 (350)
T PRK10880        229 PERTGYFLLLQHGDEVWLEQRPPSG-LWGGLFCFP  262 (350)
T ss_pred             CeEEEEEEEEEECCEEEEEECCccC-hhhccccCC
Confidence            4455555666667899999998765 489999999

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=82.15  E-value=3.9  Score=37.29  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             eeEEEEEEEE-EeCCCeEEEEEecCCCCCCCCceeec
Q 027372          120 LLHRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNT  155 (224)
Q Consensus       120 llHra~sv~l-fn~~g~lLLqqRs~~K~tfPG~Wd~t  155 (224)
                      ..++.+.+++ .+.+|++||+||.... .+.|+|++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~gl~~~p  259 (275)
T TIGR01084       224 PPERTTYFLVLQNYDGEVLLEQRPEKG-LWGGLYCFP  259 (275)
T ss_pred             CCeEEEEEEEEEeCCCeEEEEeCCCCc-hhhccccCC
Confidence            3455555554 4567899999997665 589999998

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2i6k_A	235	Crystal Structure Of Human Type I Ipp Isomerase Com		8e-42
2dho_A	235	Crystal Structure Of Human Ipp Isomerase I In Space		1e-41
2icj_A	233	The Crystal Structure Of Human Isopentenyl Diphopha		1e-41
2pny_A	246	Structure Of Human Isopentenyl-Diphosphate Delta-Is		9e-37
3hyq_A	184	Crystal Structure Of Isopentenyl-Diphosphate Delta-		3e-10
1x83_A	189	Y104f Ipp Isomerase Reacted With (S)-Bromohydrine O		4e-09
2g73_A	183	Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp		4e-09
1r67_A	190	Y104a Mutant Of E.coli Ipp Isomerase Length = 190		5e-09
1x84_A	189	Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of		5e-09
1nfs_A	183	Structure And Mechanism Of Action Of Isopentenylpyr		5e-09
1hzt_A	190	Crystal Structure Of Metal-Free Isopentenyl Diphosp		6e-09
1i9a_A	182	Structural Studies Of Cholesterol Biosynthesis: Mev		9e-09
1q54_A	183	Structure And Mechanism Of Action Of Isopentenylpyr		5e-08
1hx3_A	190	Crystal Structure Of E.Coli Isopentenyl Diphosphate		5e-08

>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed With A Substrate Analog Length = 235

Iteration: 1
 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78  MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
           +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LL
Sbjct: 17  LDKQQVQLLAE-XCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
           LQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +
Sbjct: 75  LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
           E   L RI YKA SDG WGEHE
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHE 156

>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group P212121 Length = 235

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78  MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
           +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LL
Sbjct: 17  LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
           LQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +
Sbjct: 75  LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
           E   L RI YKA SDG WGEHE
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHE 156

>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate Isomerase Length = 233

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78  MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
           +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LL
Sbjct: 15  LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 72
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
           LQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +
Sbjct: 73  LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 132
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
           E   L RI YKA SDG WGEHE
Sbjct: 133 EINYLTRIHYKAQSDGIWGEHE 154

>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase 2 Length = 246

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 72  ATTDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFL 129
           + +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV L
Sbjct: 19  SMSDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVL 77
Query: 130 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
           FN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI
Sbjct: 78  FNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGI 137
Query: 190 CAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
             E +  ++   +    +KA SD  WGEHE
Sbjct: 138 PGEQISPEDIVFMTIYHHKAKSDRIWGEHE 167

>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate Delta-Isomerase From Salmonella Entericase Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 88  EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
           E+  +L+DE D+  G   KY  H +        LH AFS +LFN   +LL+ +RS +K  
Sbjct: 6   EEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSKKA 60
Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
           +P VWTN+ C HP  ++ E  EE       A  R+   ELG+   D+
Sbjct: 61  WPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDL 98

>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp Length = 183

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase Length = 190

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRA 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-dimethylallylpyrophosphate Isomerase: Complex With Nipp Length = 183

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase And Isopentenyl Diphosphate Isomerase Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 89  DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
           +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K  +
Sbjct: 4   EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
           P VWTN+ C HP   ES           +A  R+   ELG+  E  P +   P  R    
Sbjct: 59  PGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRYRAT 107
Query: 209 APS 211
            PS
Sbjct: 108 DPS 110

>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-Dimethylallylpyrophosphate Isomerase: Complex With The Bromohydrine Of Ipp Length = 183

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+   HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+   HP   ES           +A  R+   ELG+  E  P +   P  R 
Sbjct: 56  KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
               PS
Sbjct: 105 RATDPS 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	1e-56
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	2e-55
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	1e-49
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	2e-44
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-39
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	2e-05

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235

 Score =  178 bits (453), Expect = 1e-56
 Identities = 90/152 (59%), Positives = 107/152 (70%), Gaps = 3/152 (1%)

Query: 68  TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV 127
            M +  T+  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSV
Sbjct: 8   HMPEINTN-HLDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSV 64

Query: 128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL 187
           FLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  EL
Sbjct: 65  FLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAEL 124

Query: 188 GICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
           GI  E+VP +E   L RI YKA SDG WGEHE
Sbjct: 125 GIPLEEVPPEEINYLTRIHYKAQSDGIWGEHE 156

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246

 Score =  176 bits (446), Expect = 2e-55
 Identities = 80/161 (49%), Positives = 105/161 (65%), Gaps = 3/161 (1%)

Query: 60  SSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLN 119
           SS      +M D   D  +D  Q + + E+  I+VDEND+V+G + K NCHL E IE   
Sbjct: 11  SSGLVPRGSMSDINLD-WVDRRQLQRL-EEMLIVVDENDKVIGADTKRNCHLNENIEK-G 67

Query: 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 179
           LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AA
Sbjct: 68  LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAA 127

Query: 180 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHER 220
           QR+L  ELGI  E +  ++   +    +KA SD  WGEHE 
Sbjct: 128 QRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEI 168

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score =  159 bits (404), Expect = 1e-49
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 18/134 (13%)

Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           M  +  IL++      G   KY  H  +       LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1   MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55

Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +        
Sbjct: 56  KAWPGVWTNSVCGHPQLGESNE---------DAVIRRCRYELGV--EITPPESI--YPDF 102

Query: 206 LYKAPSDGKWGEHE 219
            Y+A       E+E
Sbjct: 103 RYRATDPSGIVENE 116

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score =  145 bits (368), Expect = 2e-44
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 22/139 (15%)

Query: 86  MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
           + ++   LV+E D VVG   + +  L           R  + FL NS+ +L + +RS +K
Sbjct: 4   VSDERLDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSK 57

Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
             FP     +        E+            A +R+  +EL +  + +           
Sbjct: 58  SLFPNALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALSWRPLA----- 103

Query: 206 LYKAPSDGKWGEHERNVFI 224
              +P           V+ 
Sbjct: 104 -SFSPFQTTLSSFMC-VYE 120

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score =  132 bits (335), Expect = 2e-39
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 82  QRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQR 141
           QRRL   +   +V+E + V+   ++          +  L HRA  + + +   ++L+Q+R
Sbjct: 3   QRRLASTEWVDIVNEENEVIAQASREQMR------AQCLRHRATYIVVHDGMGKILVQRR 56

Query: 142 SGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201
           + TK   P +   T        E          +  +A+R+  +ELGI         F  
Sbjct: 57  TETKDFLPGMLDATAGGVVQADEQ---------LLESARREAEEELGI-----AGVPFAE 102

Query: 202 LGRILYKAPSDGKWG 216
            G+  ++  +   WG
Sbjct: 103 HGQFYFEDKNCRVWG 117

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 179
           +  R     L  +    LL + +  +  FP  W  +          E IEE       A 
Sbjct: 25  MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVE---PGERIEE-------AL 74

Query: 180 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           +R++ +ELG       +  +T    I  K  +DG+  E 
Sbjct: 75  RREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEI 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 95  DENDRVVGHENKYNC-----HL--MEKIESLNLLHRAFSVFLFNSKYELLLQQR---SGT 144
           D +D +  + ++Y       HL  +E  E + L    F  F F       L+Q+     T
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-------LEQKIRHDST 512

Query: 145 KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204
                    NT      Y+    I +N           +LD L    E++   ++T L R
Sbjct: 513 AWNASGSILNTLQQLKFYKP--YICDND-PKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 205 ILYKAPSDGKWGEHERNV 222
           I   A  +  + E  + V
Sbjct: 570 IALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 41/327 (12%), Positives = 81/327 (24%), Gaps = 140/327 (42%)

Query: 4   TTLYNCATTKLCSSLINNSSSFSKSRLFFSSSHFAPR---VSSIRRPL-SLR-------- 51
           T +Y     +L     N++  F+K        +   R      +R+ L  LR        
Sbjct: 109 TRMYIEQRDRLY----NDNQVFAK--------YNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 52  ---GASRSSSSSSSARAIS------------TMG-DATTDAGMDAVQ------------- 82
              G+ ++  +     +               +    + +  ++ +Q             
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 83  ------------------RRLM-----------------------FEDEC-ILV---DEN 97
                             RRL+                       F   C IL+    + 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 98  --DRVVGHENKY-----NCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 150
             D +      +     +   +   E  +L       +L     +L  +  +      P 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTN----PR 328

Query: 151 V--------------WTNTCCSHPLYRESELIEENALGVRNAA-QRKLLDELGICAEDVP 195
                          W N    H    +   I E++L V   A  RK+ D L +      
Sbjct: 329 RLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 196 VDEFTPLGRILYKAPSDGKWGEHERNV 222
           +     L  I         W +  ++ 
Sbjct: 387 IPTIL-LSLI---------WFDVIKSD 403

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 16/136 (11%)

Query: 93  LVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLF---NSKYELLLQQRSGTKVT 147
              E  RV     +    L+++       +      +  +    +   L + +RS  K  
Sbjct: 87  PRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSV 146

Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 207
            P    N          S         +R    ++  +E  +        +  P+G I Y
Sbjct: 147 APGKLDNMVAGGQPADLS---------LRQNLIKECAEEADLPEAL--ARQAIPVGAITY 195

Query: 208 KAPSDGKWGEHERNVF 223
              S          ++
Sbjct: 196 CMESPAGIKPDTLFLY 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	100.0
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	100.0
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.94
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.92
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.9
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.85
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.65
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.59
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.58
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.54
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.53
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.53
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.5
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.49
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.49
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.48
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.48
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.47
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.47
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.46
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.46
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.45
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.45
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.45
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.44
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.42
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.42
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.42
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.41
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.41
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.41
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.41
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.4
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.39
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.37
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.37
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.37
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.36
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.35
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.34
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.34
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.33
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.32
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.3
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.3
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.28
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.28
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.27
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.27
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.26
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.26
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.24
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.23
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.23
3f13_A	163	Putative nudix hydrolase family member; structural	99.23
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.23
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.22
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.2
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.17
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.14
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.14
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.13
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.1
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.1
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.09
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.08
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.06
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.02
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	98.97
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	98.97
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	98.94
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	98.81
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.76
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.74
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.43
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.09
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	97.46

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=271.37  Aligned_cols=155  Identities=48%  Similarity=0.701  Sum_probs=135.0

Q ss_pred             ccCCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCC
Q 027372           68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT  147 (224)
Q Consensus        68 ~~~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~t  147 (224)
                      ..|++...+|||+.|+++| +|.|+|||++|+++|.++|+.||+++++ ++|++|++|+|+|+|++|+||||||+..|.+
T Consensus        18 ~~~~~~~~~~~~~~q~~~~-~E~~~lvd~~~~~iG~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~   95 (246)
T 2pny_A           18 GSMSDINLDWVDRRQLQRL-EEMLIVVDENDKVIGADTKRNCHLNENI-EKGLLHRAFSVVLFNTKNRILIQQRSDTKVT   95 (246)
T ss_dssp             SCGGGGCCTTSCHHHHHHT-TCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSS
T ss_pred             ccccccccccCCHHHHhhc-cceEEEEcCCCCEEEEEEhHHhcccccc-CCCcEEEEEEEEEEeCCCEEEEEEecCCCCC
Confidence            4566778999999999988 5799999999999999999999988777 4599999999999999999999999999999


Q ss_pred             CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       148 fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      |||+|+++||||+++||++..++..+|+.+||+|||+|||||++..++.+++.++++++|.++.+++|++||++|+|
T Consensus        96 ~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf  172 (246)
T 2pny_A           96 FPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLL  172 (246)
T ss_dssp             STTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEE
T ss_pred             CCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEEEEEEEEecCCCceeeeEEEEEE
Confidence            99999999999999993211111123348999999999999998766666789999999999988889999999985

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=100.00  E-value=1.8e-37  Score=268.94  Aligned_cols=154  Identities=56%  Similarity=0.865  Sum_probs=123.8

Q ss_pred             cCCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCC
Q 027372           69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF  148 (224)
Q Consensus        69 ~~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tf  148 (224)
                      .|.+..++++|+.|+++| +|.|+|||++|+++|.++|+.||+++++ ++|++|++|+|+|+|.+|+||||||+..|.+|
T Consensus         8 ~~~~~~~~~~~~~q~~~~-~E~~~lvd~~~~~~G~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~   85 (235)
T 2dho_A            8 HMPEINTNHLDKQQVQLL-AEMCILIDENDNKIGAETKKNCHLNENI-EKGLLHRAFSVFLFNTENKLLLQQRSDAKITF   85 (235)
T ss_dssp             -------------CCCSS-CCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSSS
T ss_pred             cCCcccccccChhHHhhc-CcEEEEEcCCCCEEEEEEhHHhcccccc-CCCceEEEEEEEEEcCCCEEEEEEecCcCCCC
Confidence            456678999999999987 5799999999999999999999988776 45999999999999999999999999999999


Q ss_pred             CCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       149 PG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ||+|+++||||+++||+++.++...|+.+||+|||+|||||.+..++.+++.++++++|.++.+++|++||++|+|
T Consensus        86 pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf  161 (235)
T 2dho_A           86 PGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYIL  161 (235)
T ss_dssp             TTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEE
T ss_pred             CCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEEEEEEEeccCCCccceeEEEEEE
Confidence            9999999999999994422111223458999999999999998766566789999999999988889999999985

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.94  E-value=9.8e-27  Score=209.87  Aligned_cols=120  Identities=12%  Similarity=0.024  Sum_probs=108.2

Q ss_pred             hcCeEEEEcCCC-cEEEEEecccccchhhcccCCeeEEEEEEEEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCC
Q 027372           87 FEDECILVDEND-RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLY  162 (224)
Q Consensus        87 ~eE~~~vvD~~d-~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~  162 (224)
                      .+|.++|||++| +++|.++|..+|+      .|++|++|++++|+.+|   +||||||+..|.+|||+||++||||+.+
T Consensus        88 r~E~~~V~~~~~~~~~~~~eR~~~~~------~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~  161 (300)
T 3dup_A           88 RGELYRVNQSWGEPTLMLLDRAVVPT------FGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPA  161 (300)
T ss_dssp             CSCEEEECSSTTSCCCEEEEGGGTGG------GTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCT
T ss_pred             ccccEEeecCCCCeeeEEEEhhhccc------cceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCC
Confidence            478999999986 8999999999996      69999999999999888   9999999999999999999999999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ||+         +.+||+||+.||+||+.+.+  ..+.+++.+.|.++..++ .++|++|||
T Consensus       162 GEs---------~~eaA~REl~EElGI~~~~~--~~l~~~g~i~y~~~~~~G-~~~E~~~vy  211 (300)
T 3dup_A          162 DLS---------LRQNLIKECAEEADLPEALA--RQAIPVGAITYCMESPAG-IKPDTLFLY  211 (300)
T ss_dssp             TSC---------HHHHHHHHHHHHHCCCHHHH--TTCEEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred             CCC---------HHHHHHHHHHHHhCCChhhh--hhccccceEEEEEecCCC-eEEEEEEEE
Confidence            999         79999999999999998643  357889999998877655 588998875

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.92  E-value=1.6e-25  Score=183.78  Aligned_cols=121  Identities=32%  Similarity=0.445  Sum_probs=75.2

Q ss_pred             hhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCC
Q 027372           86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES  165 (224)
Q Consensus        86 m~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs  165 (224)
                      |++|+|+|||++|+++|.+.|..||.     ..|++|+++.++|++.+|++||+||+..+..+||+|+++.||+++.||+
T Consensus         1 ~~~E~~~v~d~~~~~~g~~~r~~~~~-----~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt   75 (190)
T 1hzt_A            1 MQTEHVILLNAQGVPTGTLEKYAAHT-----ADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES   75 (190)
T ss_dssp             -----------------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC
T ss_pred             CCceEEEEECCCCCEeeeEEHhhhcc-----cCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCC
Confidence            67789999999999999999999995     3689999999999999999999999998889999999955999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372          166 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       166 ~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                               +.+||+||++|||||.+..+    ..+++.+.|.....+++..+++.++|
T Consensus        76 ---------~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~f  121 (190)
T 1hzt_A           76 ---------NEDAVIRRCRYELGVEITPP----ESIYPDFRYRATDPSGIVENEVCPVF  121 (190)
T ss_dssp             ---------HHHHHHHHHHHHHCCCBSCC----EEEETTCEEEEECTTSCEEEEECCEE
T ss_pred             ---------HHHHHHHHHHHHHCCCchhh----heeeeeEEEEeeCCCCCcceEEEEEE
Confidence                     79999999999999998642    05677777765544445556665543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.90  E-value=4.9e-23  Score=166.27  Aligned_cols=108  Identities=25%  Similarity=0.338  Sum_probs=90.4

Q ss_pred             HHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccC
Q 027372           81 VQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHP  160 (224)
Q Consensus        81 ~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~  160 (224)
                      ++++.|.+|.|+|||++++++|..+|..+|.      .+++|+++.++++|.+|++||++|+..+..+||+|+++.||++
T Consensus         2 ~~~~~~~~E~~~i~d~~~~~~g~~~r~~~~~------~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~v   75 (180)
T 2fkb_A            2 EQRRLASTEWVDIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVV   75 (180)
T ss_dssp             ------CCCEEEEECTTSCEEEEEEHHHHHH------HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBC
T ss_pred             CccccCCCeeEEEECCCCCEeeEEEHHHhhc------cCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCC
Confidence            3556667889999999999999999998774      5899999999999999999999999988889999999559999


Q ss_pred             CCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEE
Q 027372          161 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK  208 (224)
Q Consensus       161 ~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~  208 (224)
                      +.||+         +.+||+||++|||||.+..     +.+++.+.+.
T Consensus        76 e~gE~---------~~~aa~REl~EEtGl~~~~-----~~~l~~~~~~  109 (180)
T 2fkb_A           76 QADEQ---------LLESARREAEEELGIAGVP-----FAEHGQFYFE  109 (180)
T ss_dssp             BTTCC---------HHHHHHHHHHHHHCCBSCC-----CEEEEEEEEE
T ss_pred             CCCCC---------HHHHHHHHHHHHHCCCccc-----eEEEEEEEec
Confidence            99999         7999999999999998753     3556666554

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.85  E-value=4.9e-21  Score=153.37  Aligned_cols=98  Identities=26%  Similarity=0.316  Sum_probs=86.1

Q ss_pred             hcCeEEEEcCCCcEEEEEecccc---cchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCcee-ecCCccCCC
Q 027372           87 FEDECILVDENDRVVGHENKYNC---HLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWT-NTCCSHPLY  162 (224)
Q Consensus        87 ~eE~~~vvD~~d~~iG~~~R~~~---Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd-~t~gGh~~~  162 (224)
                      .+|.|+|||.+++++|...|..+   |.      .   |+++.+++++.+|++||+||+..+..+||+|+ ++ ||++++
T Consensus         5 ~~E~~~~~d~~~~~~g~~~r~~~~l~~~------~---~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~P-gG~ve~   74 (171)
T 1q27_A            5 SDERLDLVNERDEVVGQILRTDPALRWE------R---VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV-GGAVQS   74 (171)
T ss_dssp             CSSEEEEESSSSCEEEEEESSCTTSCTT------S---CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSE-EEECSS
T ss_pred             cceeeeeecCCCCEeceEEhhhhccccc------c---ceEEEEEEECCCCeEEEEEecCCCCCCCCcccccc-CccccC
Confidence            36899999999999999999988   73      2   99999999999999999999988888999999 66 999999


Q ss_pred             CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEE
Q 027372          163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL  206 (224)
Q Consensus       163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~  206 (224)
                      ||+         +.+||+||++||||+.+...   ++.+++.+.
T Consensus        75 gEs---------~~~aa~REl~EEtGl~~~~~---~l~~~~~~~  106 (171)
T 1q27_A           75 GET---------YEEAFRREAREELNVEIDAL---SWRPLASFS  106 (171)
T ss_dssp             SSC---------HHHHHHHHHHHHHSCTTSSS---CEEEEEEEC
T ss_pred             CCC---------HHHHHHHHHHHHHCCccccc---ceEEEEEEe
Confidence            999         79999999999999998642   356666654

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.65  E-value=6.7e-16  Score=122.71  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=55.4

Q ss_pred             CCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          118 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .+..|+++.++|++.+|++||+||+..+..+||+|.+| ||+++.||+         +.+||+||+.|||||.+..
T Consensus        23 ~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~   88 (165)
T 3oga_A           23 NAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLIL   88 (165)
T ss_dssp             -CCEEEEEEEEEEEETTEEEEEEECC------CCEECC-CEECCTTCC---------HHHHHHHHHHHHHCSSCCE
T ss_pred             CCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc
Confidence            47899999999999999999999998888899999999 999999999         7999999999999999864

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.59  E-value=5.6e-15  Score=115.64  Aligned_cols=77  Identities=25%  Similarity=0.275  Sum_probs=64.3

Q ss_pred             CCeeEEEEEEEEEeCCCeEEEEEecCC--CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 027372          118 LNLLHRAFSVFLFNSKYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP  195 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g~lLLqqRs~~--K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~  195 (224)
                      ....|+++.++|+|.+|++||+||...  +..++|+|+++ ||+++.||+         +.+||+||+.||||+.+..  
T Consensus         9 ~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~--   76 (159)
T 1sjy_A            9 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRP--   76 (159)
T ss_dssp             CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEE--
T ss_pred             CCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHHCcccee--
Confidence            478899999999999999999999863  55689999998 999999999         7999999999999999753  


Q ss_pred             CCceeeeeEEEEEc
Q 027372          196 VDEFTPLGRILYKA  209 (224)
Q Consensus       196 ~~~l~~lgri~Y~a  209 (224)
                         +.+++.+.+..
T Consensus        77 ---~~~l~~~~~~~   87 (159)
T 1sjy_A           77 ---VKFLGAYLGRF   87 (159)
T ss_dssp             ---EEEEEEEEEEC
T ss_pred             ---eEEEEEEeccc
Confidence               45666665543

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.58  E-value=1.1e-14  Score=114.36  Aligned_cols=76  Identities=21%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      ...|.++.++|+|.+|++||+||...+..++|+|.+| ||+++.||+         +.+||+||+.||+||.+...    
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~~----   70 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLP-GGKVNPDES---------LKEGVAREVWEETGITMVPG----   70 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCCC----
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECc-eeecCCCCC---------HHHHHHhhhhhhhCcEeecc----
Confidence            4578899999999999999999998877899999999 999999999         79999999999999998643    


Q ss_pred             eeeeeEEEEEc
Q 027372          199 FTPLGRILYKA  209 (224)
Q Consensus       199 l~~lgri~Y~a  209 (224)
                       .+++.+.+..
T Consensus        71 -~~~~~~~~~~   80 (153)
T 3grn_A           71 -DIAGQVNFEL   80 (153)
T ss_dssp             -SEEEEEEEEC
T ss_pred             -eEEEEEEEec
Confidence             3455554443

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.54  E-value=3.6e-14  Score=109.35  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ...++++.++|++.+|++||+||...+. ++|+|.++ ||+++.||+         +.+||+||+.||+|+.+...
T Consensus         5 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~-~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~   69 (144)
T 3r03_A            5 LPILLVTAAALIDPDGRVLLAQRPPGKS-LAGLWEFP-GGKLEPGET---------PEAALVRELAEELGVDTRAS   69 (144)
T ss_dssp             -CEEEEEEEEEBCTTSCEEEEECCTTSS-STTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG
T ss_pred             CceeEEEEEEEEcCCCEEEEEEeCCCCC-CCCcEECC-CcEecCCCC---------HHHHHHHHHHHHhCceeecc
Confidence            4578888999999999999999997765 99999999 999999999         79999999999999998653

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.53  E-value=5.2e-14  Score=110.20  Aligned_cols=75  Identities=19%  Similarity=0.102  Sum_probs=61.5

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      ...++.+++++.+|++||+||+..  .++|+|++| ||+++.||+         +.+||+||+.|||||.+..   ..+.
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~---~~~~   81 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPI---TAGQ   81 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCCG---GGSE
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCC--CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCCCc---ccce
Confidence            446888999998999999999863  379999999 999999999         7999999999999998631   2456


Q ss_pred             eeeEEEEEcc
Q 027372          201 PLGRILYKAP  210 (224)
Q Consensus       201 ~lgri~Y~a~  210 (224)
                      +++.+.+..+
T Consensus        82 ~~~~~~~~~~   91 (160)
T 1rya_A           82 FYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEeEEEc
Confidence            7777665443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.50  E-value=1.4e-14  Score=113.46  Aligned_cols=61  Identities=25%  Similarity=0.318  Sum_probs=56.1

Q ss_pred             CCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          118 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .|.+|+++.++++|.+|++||+||..    +||+|++| ||+++.||+         +.+||+||++|||||.+.
T Consensus        10 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           10 PEGYRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSA   70 (165)
T ss_dssp             CSSCCCEEEEEEECTTSCEEEEEETT----EEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCSE
T ss_pred             ccceeeeEEEEEECCCCcEEEEecCC----CCCcEECC-eeccCCCCC---------HHHHHHHHHHHhhCCChh
Confidence            47899999999999999999999973    57999999 999999999         799999999999999864

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.49  E-value=1.1e-13  Score=109.11  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=57.9

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ...++++.++|++.+|++||+||...+. ++|+|.++ ||+++.||+         +.+||+||+.||+|+.+...
T Consensus        26 ~~~~~~~~~~i~~~~~~vLL~~r~~~~~-~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~   90 (158)
T 3hhj_A           26 SSLLIVVACALLDQDNRVLLTQRPEGKS-LAGLWEFP-GGKVEQGET---------PEASLIRELEEELGVHVQAD   90 (158)
T ss_dssp             -CEEEEEEEEEBCTTSEEEEEECCCTTS-CCCCCBCC-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG
T ss_pred             CceEEEEEEEEEeCCCEEEEEEeCCCCC-CCCEEECC-ceeecCCCC---------HHHHHHHHHHHHhCcEeecc
Confidence            4678888999999999999999987754 89999999 999999999         79999999999999998653

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.49  E-value=1.7e-13  Score=109.27  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             CCeeEEEEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 027372          118 LNLLHRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV  196 (224)
Q Consensus       118 ~gllHra~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~  196 (224)
                      ....|.++.++|++.+ |++||+||..  ..|+|.|.+| ||++++||+         +.+||+||+.|||||.+..   
T Consensus         6 ~~~~~~~v~~vi~~~~~~~vLL~~r~~--~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~---   70 (161)
T 3exq_A            6 TQPVELVTMVMVTDPETQRVLVEDKVN--VPWKAGHSFP-GGHVEVGEP---------CATAAIREVFEETGLRLSG---   70 (161)
T ss_dssp             CCCEEEEEEEEEBCTTTCCEEEECCCC--CTTTCSBBCC-CCBCCTTSC---------HHHHHHHHHHHHHCCEESC---
T ss_pred             cCCceEEEEEEEEeCCCCEEEEEEccC--CCCCCCEEcc-ceecCCCCC---------HHHHHHHHHHHhhCcEecC---
Confidence            3568889999999887 7999999983  4588999998 999999999         7999999999999999763   


Q ss_pred             CceeeeeEEEEEccc
Q 027372          197 DEFTPLGRILYKAPS  211 (224)
Q Consensus       197 ~~l~~lgri~Y~a~~  211 (224)
                        +.+++.+.+..+.
T Consensus        71 --~~~~~~~~~~~~~   83 (161)
T 3exq_A           71 --VTFCGTCEWFDDD   83 (161)
T ss_dssp             --CEEEEEEEEECSS
T ss_pred             --CcEEEEEecccCC
Confidence              3567777666543

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.48  E-value=1.1e-13  Score=108.59  Aligned_cols=72  Identities=24%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      |.+++++|++ +|++||.||.      .|.|.+| |||+++||+         +.+||+||++|||||.+..     +.+
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~~   61 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFP-KGNIEPGEK---------PEETAVREVWEETGVKGEI-----LDY   61 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT------TSCEECC-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC------CCcEECC-eeEecCCCC---------HHHHHHHHHHHhcCceEEE-----eee
Confidence            4566777776 5899999885      3789999 999999999         7999999999999999753     356


Q ss_pred             eeEEEEEcccCCCe
Q 027372          202 LGRILYKAPSDGKW  215 (224)
Q Consensus       202 lgri~Y~a~~~~~w  215 (224)
                      ++.+.|..+..+..
T Consensus        62 l~~~~~~~~~~~~~   75 (134)
T 3i7u_A           62 IGEIHYWYTLKGER   75 (134)
T ss_dssp             EEEEEEEEEETTEE
T ss_pred             eeeeeEEecCCCce
Confidence            77776665554443

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.48  E-value=9.7e-14  Score=107.42  Aligned_cols=71  Identities=18%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCC-CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~t-fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      .++.++|++ +|++||+||...+.. ++|+|.+| ||+++.||+         +.+||+||+.||+||.+..     ..+
T Consensus         7 ~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~-----~~~   70 (140)
T 3gwy_A            7 EVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFP-GGKVEEGES---------LQEALQREIMEEMDYVIEV-----GEK   70 (140)
T ss_dssp             EEEEEEEEE-TTEEEEEEC---------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEE-----EEE
T ss_pred             EEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECC-CccCCCCCC---------HHHHHHHHHHHhhCcEEEe-----ceE
Confidence            456667777 799999999987653 89999999 999999999         7999999999999998753     345


Q ss_pred             eeEEEEEc
Q 027372          202 LGRILYKA  209 (224)
Q Consensus       202 lgri~Y~a  209 (224)
                      ++.+.|..
T Consensus        71 ~~~~~~~~   78 (140)
T 3gwy_A           71 LLTVHHTY   78 (140)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEEEe
Confidence            55554433

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.47  E-value=2.5e-13  Score=109.43  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=54.7

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ..+|.++.+++++.+|++||++|..     +|.|.++ ||+++.||+         +.+||+||+.|||||.+..
T Consensus         5 ~~~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p-~G~~e~gE~---------~~~aa~RE~~EE~G~~~~~   64 (164)
T 2kdv_A            5 DGYRPNVGIVICNRQGQVMWARRFG-----QHSWQFP-QGGINPGES---------AEQAMYRELFEEVGLSRKD   64 (164)
T ss_dssp             SSEEEEEEEEEECTTSEEEEEEETT-----CCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG
T ss_pred             CCCCcEEEEEEEccCCEEEEEEEcC-----CCeEECC-eeecCCCCC---------HHHHHHHHHHHHHCCCccc
Confidence            4589999999999999999999974     6899999 999999999         7999999999999999763

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.47  E-value=3.5e-13  Score=107.06  Aligned_cols=73  Identities=21%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      ...|.++.++|++ +|+|||+||....  ++|.|.++ ||+++.||+         +.+||+||++|||||.+...    
T Consensus        26 ~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~----   88 (157)
T 4dyw_A           26 EQPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLP-GGKVDWLEP---------VERAVCREIEEELGIALERA----   88 (157)
T ss_dssp             CCCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEEESC----
T ss_pred             CCceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECC-cccCCCCCC---------HHHHHHHHHHHHHCcccccC----
Confidence            4578888999998 7999999998654  79999999 999999999         79999999999999998643    


Q ss_pred             eeeeeEEEEEc
Q 027372          199 FTPLGRILYKA  209 (224)
Q Consensus       199 l~~lgri~Y~a  209 (224)
                       .+++.+.+..
T Consensus        89 -~~~~~~~~~~   98 (157)
T 4dyw_A           89 -TLLCVVDHID   98 (157)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -cEEEEEEeec
Confidence             4455554443

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.46  E-value=2.1e-13  Score=104.29  Aligned_cols=73  Identities=22%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      -|+.+.++|++.+|++||+||+..+ .++|+|+++ ||+++.||+         +.+||+||+.||+|+.+..     +.
T Consensus         7 ~~~~~~~~ii~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~   70 (140)
T 2rrk_A            7 KMIEVVAAIIERDGKILLAQRPAQS-DQAGLWEFA-GGKVEPDES---------QRQALVRELREELGIEATV-----GE   70 (140)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCSSC-SCCCCEECC-EEECCTTSC---------HHHHHHHHHHHHSCEEEEC-----CE
T ss_pred             ccceEEEEEEEcCCEEEEEEcCCCC-CCCCEEECC-ceecCCCCC---------HHHHHHHHHHHHHCCeeec-----cc
Confidence            4566666666788999999998765 489999999 999999999         7999999999999998753     24


Q ss_pred             eeeEEEEEc
Q 027372          201 PLGRILYKA  209 (224)
Q Consensus       201 ~lgri~Y~a  209 (224)
                      +++.+.|..
T Consensus        71 ~~~~~~~~~   79 (140)
T 2rrk_A           71 YVASHQREV   79 (140)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            555554443

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.45  E-value=2.4e-13  Score=103.94  Aligned_cols=60  Identities=30%  Similarity=0.330  Sum_probs=50.7

Q ss_pred             eEEEEEEEEEeC---CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          121 LHRAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       121 lHra~sv~lfn~---~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      .++++.+++++.   ++++||+||+.    .||.|.+| ||++++||+         +.+||+||+.||||+.++.+
T Consensus         2 ~~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~   64 (138)
T 1ktg_A            2 VVKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQL   64 (138)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGE
T ss_pred             ceEEEEEEEEEecCCCcEEEEEEccC----CCCcEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCCccce
Confidence            357788888876   46899999973    36899998 999999999         79999999999999976543

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.45  E-value=2.1e-13  Score=107.89  Aligned_cols=49  Identities=33%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      |+++++||.||+..    ||.|.+| ||++++||+         +.+||+||++||||+.+..
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~   69 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPP-KGHVEPGED---------DLETALRETQEEAGIEAGQ   69 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECS-EEECCSSCC---------HHHHHHHHHHHHHCCCGGG
T ss_pred             CCCcEEEEEEecCC----CCCEECC-eeeccCCCC---------HHHHHHHHHHHHHCCcccc
Confidence            55668999999754    5899999 999999999         7999999999999999864

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.45  E-value=4.4e-13  Score=109.15  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      -|+++.+++++.+|++||+||...  .++|+|.++ ||+++.||+         +.+||+||+.|||||.+..     +.
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~--~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~   85 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDA-----LH   85 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSS--TTTTSEECE-EEECCTTSC---------HHHHHHHHHHHHHSCEESC-----CE
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCC--CCCCeEECc-eecCCCCCC---------HHHHHHHHHHHHHCCccee-----eE
Confidence            467777777888899999999654  479999999 999999999         7999999999999999853     46


Q ss_pred             eeeEEEEEccc
Q 027372          201 PLGRILYKAPS  211 (224)
Q Consensus       201 ~lgri~Y~a~~  211 (224)
                      +++.+.|..+.
T Consensus        86 ~l~~~~~~~~~   96 (176)
T 3q93_A           86 KVGQIVFEFVG   96 (176)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEEcCC
Confidence            77777766554

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.44  E-value=3.6e-13  Score=104.17  Aligned_cols=62  Identities=23%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ++.+.++|++.+|++||+||...+ .++|+|.++ ||+++.||+         +.+||+||+.||+|+.+...
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~   82 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENN-SLAGQWEFP-GGKIENGET---------PEEALARELNEELGIEAEVG   82 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTS-TTTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHSCEEECC
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCC-CCCCeEECC-ceeeCCCCC---------HHHHHHHHHHHHHCCccccC
Confidence            556666777788999999998875 589999999 999999999         79999999999999988643

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.42  E-value=5.8e-13  Score=104.31  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ..+|.++.++|++ +|++||+||       +|.|.+| ||++++||+         +.+||+||+.||||+.+..
T Consensus        16 ~~~~~~~~~ii~~-~~~vLl~~r-------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~   72 (154)
T 2pqv_A           16 TVFGVRATALIVQ-NHKLLVTKD-------KGKYYTI-GGAIQVNES---------TEDAVVREVKEELGVKAQA   72 (154)
T ss_dssp             EEEEEEEEECCEE-TTEEEEEEE-------TTEEECE-EEECBTTCC---------HHHHHHHHHHHHHCCCEEE
T ss_pred             ceEeEEEEEEEEE-CCEEEEEec-------CCeEECc-ccCcCCCCC---------HHHHHHHHHHHHhCCeeee
Confidence            4677788888886 689999999       6899998 999999999         7999999999999999763

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.42  E-value=9.6e-13  Score=99.15  Aligned_cols=66  Identities=32%  Similarity=0.375  Sum_probs=55.8

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      .++.+++++.+|++||+||..      |+|++| |||++.||+         +.+||+||+.||+|+.+..     +.++
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~~   61 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEV-----LLPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCC-cCcCCCCCC---------HHHHHHHHHHHhhCcEeee-----ccEE
Confidence            367888999999999999974      889999 999999999         7999999999999998753     3556


Q ss_pred             eEEEEEc
Q 027372          203 GRILYKA  209 (224)
Q Consensus       203 gri~Y~a  209 (224)
                      +.+.|..
T Consensus        62 ~~~~~~~   68 (126)
T 1vcd_A           62 YPTRYVN   68 (126)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            6666654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.42  E-value=3.4e-13  Score=103.73  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=51.2

Q ss_pred             EEEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .++.+++++.+ |++||+||+..    ||+|++| |||++.||+         +.+||+||+.|||||.+..
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~   67 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSV-TGSVEEGET---------APQAAMREVKEEVTIDVVA   67 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSS----TTCEESE-EEECCTTCC---------HHHHHHHHHHHHHCCCHHH
T ss_pred             eEEEEEEEeCCCCEEEEEEecCC----CCceECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc
Confidence            57888999875 89999999764    7999999 999999999         7999999999999999864

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.41  E-value=3.4e-13  Score=105.83  Aligned_cols=63  Identities=19%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .-.++++.+++++.+|++||+||...  .++|.|.++ |||++.||+         +.+||+||++|||||.+..
T Consensus        17 ~~~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~   79 (156)
T 3gg6_A           17 KNVCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLP-AGRMEPGET---------IVEALQREVKEEAGLHCEP   79 (156)
T ss_dssp             TTCEEEEEEECBCTTSEEEEEECCCT--TSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE
T ss_pred             CceEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECC-eeeccCCCC---------HHHHHHHHHHHhhCceeEe
Confidence            34667888888999999999999854  389999999 999999999         7999999999999998754

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.41  E-value=6.3e-13  Score=103.99  Aligned_cols=72  Identities=10%  Similarity=0.117  Sum_probs=54.9

Q ss_pred             CeeEEEEEEEEEeCCCe----EEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          119 NLLHRAFSVFLFNSKYE----LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       119 gllHra~sv~lfn~~g~----lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ...|.++.++|++ +|+    +||++|...+  +|| |.+| ||+++.||+         +.+||+||+.||||+.+.. 
T Consensus         5 ~~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-   69 (155)
T 2b06_A            5 QLTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFP-GGHVENDEA---------FAESVIREIYEETGLTIQN-   69 (155)
T ss_dssp             GCEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEES-
T ss_pred             cCcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-Eecc-ceecCCCCC---------HHHHHHHHHHHHhCccccC-
Confidence            4578888888887 566    9999998775  788 9998 999999999         7999999999999998863 


Q ss_pred             CCCceeeeeEEEEEc
Q 027372          195 PVDEFTPLGRILYKA  209 (224)
Q Consensus       195 ~~~~l~~lgri~Y~a  209 (224)
                          ..+++.+.+..
T Consensus        70 ----~~~~~~~~~~~   80 (155)
T 2b06_A           70 ----PQLVGIKNWPL   80 (155)
T ss_dssp             ----CEEEEEEEEEC
T ss_pred             ----CcEEEEEeecc
Confidence                34566655544

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.41  E-value=3.5e-13  Score=110.24  Aligned_cols=64  Identities=20%  Similarity=0.078  Sum_probs=49.8

Q ss_pred             CeeEEEEEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          119 NLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       119 gllHra~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +..|.++.+++ +.+|  ++||+||+..+..++|.|+++ ||+++.||+         +.+||+||++|||||.+..
T Consensus        32 ~~~~~~~~v~i-~~~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~   97 (194)
T 1nqz_A           32 HYRRAAVLVAL-TREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAA   97 (194)
T ss_dssp             -CEEEEEEEEE-ESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG
T ss_pred             CCceEEEEEEE-ecCCCeEEEEEEecCCCCCCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCccc
Confidence            55666665555 7788  899999998877789999998 999999999         7999999999999998764

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.41  E-value=7.5e-13  Score=103.34  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      |.++.+++. .+|++||+||.   ...+|.|.++ ||+++.||+         +.+||+||++||||+.+..     ..+
T Consensus         5 ~~~v~~ii~-~~~~vLl~~r~---~~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~   65 (153)
T 3shd_A            5 HVTVACVVH-AEGKFLVVEET---INGKALWNQP-AGHLEADET---------LVEAAARELWEETGISAQP-----QHF   65 (153)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEE---ETTEEEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCC-----CEE
T ss_pred             ceEEEEEEE-eCCEEEEEEec---CCCCCCEECC-eEEeCCCCC---------HHHHHHHHHHHHHCccccc-----CcE
Confidence            445555554 57899999998   2357899999 999999999         7999999999999999764     345


Q ss_pred             eeEEEEEcc
Q 027372          202 LGRILYKAP  210 (224)
Q Consensus       202 lgri~Y~a~  210 (224)
                      ++.+.|..+
T Consensus        66 ~~~~~~~~~   74 (153)
T 3shd_A           66 IRMHQWIAP   74 (153)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEEecC
Confidence            666666555

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.40  E-value=1.3e-12  Score=101.56  Aligned_cols=71  Identities=17%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      .++.+++ +.+|++||+||...+.  +|+|.+| ||+++.||+         +.+||+||++|||||.+..     ..++
T Consensus         9 ~~v~~ii-~~~~~vLl~~r~~~~~--~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~   70 (153)
T 2b0v_A            9 VTVAAVI-EQDDKYLLVEEIPRGT--AIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLP-----EVLT   70 (153)
T ss_dssp             EEEEEEC-EETTEEEEEEECSSSS--CCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEE-----EEEE
T ss_pred             EEEEEEE-eeCCEEEEEEEcCCCC--CCeEECC-CcCcCCCCC---------HHHHHHHHHHHhhCcEecc-----ceEE
Confidence            3444444 4678999999987654  8999999 999999999         7999999999999999753     3556


Q ss_pred             eEEEEEccc
Q 027372          203 GRILYKAPS  211 (224)
Q Consensus       203 gri~Y~a~~  211 (224)
                      +.+.|..+.
T Consensus        71 ~~~~~~~~~   79 (153)
T 2b0v_A           71 GIYHWTCAS   79 (153)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEeCCC
Confidence            666665554

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.39  E-value=7.4e-13  Score=102.13  Aligned_cols=58  Identities=21%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             eeEEEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          120 LLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       120 llHra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ..|.++.++|+++ +|++||+||.      +|.|++| ||+++.||+         +.+||+||+.||||+.+..
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~   74 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEI   74 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT------TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCeeEe
Confidence            4566778888886 7899999984      3899999 999999999         7999999999999998753

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.37  E-value=1.3e-12  Score=106.68  Aligned_cols=74  Identities=20%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             CeeEEEEEEEEEe---C----CCeEEEEEecC-----CCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHH
Q 027372          119 NLLHRAFSVFLFN---S----KYELLLQQRSG-----TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE  186 (224)
Q Consensus       119 gllHra~sv~lfn---~----~g~lLLqqRs~-----~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EE  186 (224)
                      ...|.++.++|+.   .    +++|||+||+.     .+..++|.|.++ ||+++.||+         +.+||+||++||
T Consensus        24 ~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lP-GG~ve~gEs---------~~~aa~REl~EE   93 (187)
T 3i9x_A           24 TPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVP-GGFVDENES---------AEQAAERELEEE   93 (187)
T ss_dssp             CCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECS-EEECCTTSC---------HHHHHHHHHHHH
T ss_pred             CcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECC-ceeCCCCCC---------HHHHHHHHHHHH
Confidence            3456677766654   2    46899999975     455689999999 999999999         799999999999


Q ss_pred             hCCCccCCCCCceeeeeEEEE
Q 027372          187 LGICAEDVPVDEFTPLGRILY  207 (224)
Q Consensus       187 lGI~~~~v~~~~l~~lgri~Y  207 (224)
                      |||.+..     +.+++.+.+
T Consensus        94 tGl~~~~-----~~~l~~~~~  109 (187)
T 3i9x_A           94 TSLTDIP-----LIPFGVFDK  109 (187)
T ss_dssp             HCCCSCC-----CEEEEEECC
T ss_pred             HCCCCcc-----eEEEEEEcC
Confidence            9998753     356665443

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.37  E-value=8.2e-13  Score=104.43  Aligned_cols=59  Identities=22%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ..|.++.++|++ +|++||+||..     +|.|.++ ||+++.||+         +.+||+||++|||||.+...
T Consensus         4 ~~~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~   62 (159)
T 3f6a_A            4 NRHFTVSVFIVC-KDKVLLHLHKK-----AKKMLPL-GGHIEVNEL---------PEEACIREAKEEAGLNVTLY   62 (159)
T ss_dssp             CSCEEEEEEEEE-TTEEEEEECSS-----SCCEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCEEC
T ss_pred             cceEEEEEEEEE-CCEEEEEEcCC-----CCeEECC-ccCccCCCC---------HHHHHHHHHHHHhCCCceec
Confidence            358889999998 78999999874     6899998 999999999         79999999999999998654

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.37  E-value=5.1e-13  Score=100.57  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       127 v~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++|++.+|++||+||...+ .++|+|++| ||+++.||+         +.+||+||+.||+|+.+..
T Consensus         9 ~ii~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~~e~gE~---------~~~aa~RE~~EE~G~~~~~   64 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQH   64 (129)
T ss_dssp             EECEETTTEEEEEECSSCC-SSSCCEECC-CCCSSSCSS---------TTHHHHHHHHTTTCCSSCE
T ss_pred             EEEEecCCEEEEEEeCCCC-CCCCeEECC-ccCcCCCCC---------HHHHHHHHHHHHhCCcccc
Confidence            3456888999999999876 689999998 999999999         6899999999999998753

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.36  E-value=3.2e-12  Score=105.40  Aligned_cols=69  Identities=17%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      +++.++|++ +|++||+||.     .+|+|.+| ||+++.||+         +.+||+||+.|||||.+..     ..++
T Consensus         5 ~v~~~vi~~-~~~vLL~~r~-----~~g~W~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~~   63 (188)
T 3fk9_A            5 RVTNCIVVD-HDQVLLLQKP-----RRGWWVAP-GGKMEAGES---------ILETVKREYWEETGITVKN-----PELK   63 (188)
T ss_dssp             EEEEEEEEE-TTEEEEEECT-----TTCCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEESS-----CEEE
T ss_pred             EEEEEEEEE-CCEEEEEEeC-----CCCeEECC-eecccCCCC---------HHHHHHHHHHHHHCCCCCC-----ceEE
Confidence            566777776 6899999984     37999999 999999999         7999999999999998764     2455


Q ss_pred             eEEEEEcccC
Q 027372          203 GRILYKAPSD  212 (224)
Q Consensus       203 gri~Y~a~~~  212 (224)
                      +.+.+..+.+
T Consensus        64 ~~~~~~~~~~   73 (188)
T 3fk9_A           64 GIFSMVIFDE   73 (188)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEecCC
Confidence            5555554443

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.35  E-value=1.7e-12  Score=104.02  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             CeeEE-EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          119 NLLHR-AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       119 gllHr-a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      .+.|+ ++.+++++ +|++||.||.... .++|+|++| ||++++||+         +.+||+||+.||||+ +.     
T Consensus        30 ~~~~~~~v~vii~~-~~~vLL~~~~r~~-~~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl-~~-----   91 (170)
T 1v8y_A           30 IVEHKPAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGL-SG-----   91 (170)
T ss_dssp             EEEECCEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSE-EE-----
T ss_pred             EEecCCeEEEEEEE-CCEEEEEEEEeCC-CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCC-Cc-----
Confidence            45565 88889999 8999998876544 578999998 999999999         799999999999999 64     


Q ss_pred             ceeeeeEE
Q 027372          198 EFTPLGRI  205 (224)
Q Consensus       198 ~l~~lgri  205 (224)
                      .+.+++.+
T Consensus        92 ~~~~l~~~   99 (170)
T 1v8y_A           92 DLTYLFSY   99 (170)
T ss_dssp             EEEEEEEE
T ss_pred             CceeeEEE
Confidence            34556655

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.34  E-value=7.3e-13  Score=103.21  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=46.8

Q ss_pred             EEEEEEE---eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lf---n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++.|+++   +.++++||+||..     +|.|.+| |||+++||+         +.+||+||++|||||.+..
T Consensus         7 ~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~   64 (149)
T 3son_A            7 QVLVIPFIKTEANYQFGVLHRTD-----ADVWQFV-AGGGEDEEA---------ISETAKRESIEELNLDVDV   64 (149)
T ss_dssp             EEEEEEEEECSSSEEEEEEEESS-----SSCEECE-EEECCTTCC---------HHHHHHHHHHHHHTCCSCC
T ss_pred             EEEEEEEEecCCCeEEEEEEEcC-----CCCEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc
Confidence            3445555   5678999999976     3999999 999999999         7999999999999999864

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.34  E-value=1.8e-12  Score=106.81  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             CCeeEEEEEEEEEeCCC-eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 027372          118 LNLLHRAFSVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC  190 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g-~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~  190 (224)
                      ....|.+++++|++.+| ++||+||.     .+|.|.+| |||++.||+         +.+||+||++|||||.
T Consensus        41 ~~~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lP-gG~ve~gEs---------~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           41 NTIAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWT-GGHSDNEKD---------QLKVAIKELKEETGVK   99 (197)
T ss_dssp             CSSEEEEEEEEEECTTSCEEEEEEET-----TTTEEECE-EEECTTCCB---------HHHHHHHHHHHHHCCS
T ss_pred             CCCccEEEEEEEEECCCCEEEEEEec-----CCCCEECC-ccccCCCCC---------HHHHHHHHHHHHHCCC
Confidence            35799999999999886 99999986     46899999 999999999         7999999999999998

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.33  E-value=1.6e-12  Score=111.98  Aligned_cols=81  Identities=12%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             cCCeeEEEEEEEEEeCCCeEEEEEecCCCC--CCCCceeecCCccCCCCCC--hhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          117 SLNLLHRAFSVFLFNSKYELLLQQRSGTKV--TFPLVWTNTCCSHPLYRES--ELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       117 ~~gllHra~sv~lfn~~g~lLLqqRs~~K~--tfPG~Wd~t~gGh~~~gEs--~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..+.+|..+..+|++.+|++||+||...+.  .++|.|.+..|||+++||+  +. |    -+.+||+||++|||||.+.
T Consensus        62 ~d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~-E----tleeAa~REl~EEtGl~v~  136 (211)
T 3e57_A           62 YDETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPR-E----AFLKGLEREVNEEVDVSLR  136 (211)
T ss_dssp             TCTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHH-H----HHHHHHHHHHHHHEEEEEE
T ss_pred             cCCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCch-h----hHHHHHHHHHHHHhCCeee
Confidence            457788877777777789999999988763  4789999944999999998  20 1    1589999999999999764


Q ss_pred             CCCCCceeeeeEEEE
Q 027372          193 DVPVDEFTPLGRILY  207 (224)
Q Consensus       193 ~v~~~~l~~lgri~Y  207 (224)
                           .+.++|.+.+
T Consensus       137 -----~~~~ig~~~~  146 (211)
T 3e57_A          137 -----ELEFLGLINS  146 (211)
T ss_dssp             -----EEEEEEEEEC
T ss_pred             -----ccEEEEEEec
Confidence                 3567776654

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.32  E-value=5.5e-12  Score=97.13  Aligned_cols=58  Identities=21%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             eEEEEEEEEEe--CCCe--EEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          121 LHRAFSVFLFN--SKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       121 lHra~sv~lfn--~~g~--lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.++.++|++  .+|+  +||+||...    |+.|.+| ||+++.||+         +.+||+||+.|||||.+.
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~   69 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALP-GGFVEVGER---------VEEAAAREMREETGLEVR   69 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCE
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCCcc
Confidence            45566777776  7888  999999753    5669998 999999999         799999999999999875

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.30  E-value=4.4e-12  Score=105.75  Aligned_cols=69  Identities=23%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             CeeEEEEEEEE-EeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          119 NLLHRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       119 gllHra~sv~l-fn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      +..++++.+++ .+.+|++||+||..    .||.|.+| ||+++.||+         +.+||+||++|||||.+..    
T Consensus        38 ~~~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEt---------~~eaa~REl~EEtGl~~~~----   99 (194)
T 2fvv_A           38 GYKKRAACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTL----   99 (194)
T ss_dssp             SCEEEEEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE----
T ss_pred             CccccEEEEEEEECCCCEEEEEEEeC----CCCcEECC-CCcCCCCcC---------HHHHHHHHHHHHhCCcccc----
Confidence            56677766655 24578999999874    47999999 999999999         7999999999999998753    


Q ss_pred             ceeeeeEEE
Q 027372          198 EFTPLGRIL  206 (224)
Q Consensus       198 ~l~~lgri~  206 (224)
                       +.+++.+.
T Consensus       100 -~~~l~~~~  107 (194)
T 2fvv_A          100 -GRLVGIFE  107 (194)
T ss_dssp             -EEEEEEEE
T ss_pred             -ceEEEEEE
Confidence             34555554

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.30  E-value=7.7e-12  Score=99.70  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..++.++.++|++ +|++||+||...    +|.|.++ ||+++.||+         +.+||+||++|||||.+.
T Consensus        20 ~~~~~~v~~ii~~-~~~vLL~~r~~~----~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~   78 (171)
T 3id9_A           20 NIMQVRVTGILIE-DEKVLLVKQKVA----NRDWSLP-GGRVENGET---------LEEAMIREMREETGLEVK   78 (171)
T ss_dssp             --CEEEEEEEEEE-TTEEEEEECSST----TCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCEE
T ss_pred             CceEEEEEEEEEE-CCEEEEEEEECC----CCeEECC-CccCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            5677778888887 589999999863    7999999 999999999         799999999999999975

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.28  E-value=1.8e-12  Score=104.82  Aligned_cols=60  Identities=23%  Similarity=0.153  Sum_probs=52.8

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .++.+++++.+|++||+||.... .++|.|++| ||++++||+         +.+||+||+.||||+.+..
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~  101 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYRHP-TGKFLLEVP-AGKVDEGET---------PEAAARRELREEVGAEAET  101 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEEGG-GTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCEECSC
T ss_pred             CEEEEEEEcCCCEEEEEEeccCC-CCCcEEEec-cccCCCCcC---------HHHHHHHHHHHHhCCCccc
Confidence            47888899999999999987643 478999999 999999999         7999999999999998753

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=3.3e-12  Score=98.95  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             EEEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +++.++|++.+ |++||+||..     +|+|.+| |||++.||+         +.+||+||+.||||+.+..
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-----SDSWSFP-RGKISKDEN---------DIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-----SSCCBCC-EECCCSSSC---------HHHHHHHHHHHHTSCCCSS
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-----CCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCchH
Confidence            35677888876 8999999863     6899998 999999999         7999999999999999864

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.27  E-value=3.8e-12  Score=100.74  Aligned_cols=55  Identities=24%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ++.++|++ +|++||+||..     +|+|.+| ||++++||+         +.+||+||++||||+.+...
T Consensus         3 ~~~~vi~~-~~~vLL~~r~~-----~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~   57 (156)
T 1k2e_A            3 VTSGVLVE-NGKVLLVKHKR-----LGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPI   57 (156)
T ss_dssp             EEEEECEE-TTEEEEEECTT-----TCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEC
T ss_pred             EEEEEEEE-CCEEEEEEEcC-----CCcEECC-eeecCCCCC---------HHHHHHHHHHHHHCCcceec
Confidence            56778888 89999999864     6899999 999999999         79999999999999998653

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.27  E-value=6.2e-12  Score=98.56  Aligned_cols=59  Identities=22%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .++.+++++.+|++||.+|.... ..+++|.+| ||++++||+         +.+||+||++||||+.+.
T Consensus         6 ~~v~vi~~~~~~~vLLv~~~r~~-~~~~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtGl~~~   64 (145)
T 2w4e_A            6 RAVFILPVTAQGEAVLIRQFRYP-LRATITEIV-AGGVEKGED---------LGAAAARELLEEVGGAAS   64 (145)
T ss_dssp             EEEEEEEEETTSEEEEEEEEETT-TTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCEECS
T ss_pred             CEEEEEEEcCCCEEEEEEEEecC-CCCCEEEeC-CccCCCCCC---------HHHHHHHHHHHhhCCccC
Confidence            47788899999998764432211 245799999 999999999         799999999999999875

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.26  E-value=8.5e-12  Score=106.45  Aligned_cols=62  Identities=23%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             CeeEEEEEEEEE---eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          119 NLLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       119 gllHra~sv~lf---n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ...+.++.++|+   +.++++||+||...  .++|.|.+| |||+++||+         +.+||+|||.|||||.+.
T Consensus        10 ~~p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lP-GG~ve~gEs---------~~~Aa~REl~EEtGl~~~   74 (226)
T 2fb1_A           10 PTFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENV   74 (226)
T ss_dssp             CCEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSC
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECC-eeccCCCCC---------HHHHHHHHHHHHHCCCCC
Confidence            346778888888   55689999999864  578999999 999999999         799999999999999875

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.26  E-value=6.9e-12  Score=104.69  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=47.4

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.++.++|++ +|++||+||..     +|.|.+| ||++++||+         +.+||+||++||||+.+.
T Consensus        67 ~~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~v~  122 (205)
T 3q1p_A           67 PKVDIRAVVFQ-NEKLLFVKEKS-----DGKWALP-GGWADVGYT---------PTEVAAKEVFEETGYEVD  122 (205)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEC--------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEE
T ss_pred             CcceEEEEEEE-CCEEEEEEEcC-----CCcEECC-cCccCCCCC---------HHHHHHHHHHHHHCCccc
Confidence            34567778887 78999999873     7899999 999999999         799999999999999875

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=100.49  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             EEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          123 RAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       123 ra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .++.+++++. ++++||+||..   .++|.|.++ ||+++.||+         +.+||+||++|||||.+.
T Consensus        27 v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lP-GG~ve~gEs---------~~~aA~REl~EEtGl~~~   84 (199)
T 3h95_A           27 VGVAGAVFDESTRKILVVQDRN---KLKNMWKFP-GGLSEPEED---------IGDTAVREVFEETGIKSE   84 (199)
T ss_dssp             CEEEEEEEETTTTEEEEEEESS---SSTTSBBCC-EEECCTTCC---------HHHHHHHHHHHHHCCCEE
T ss_pred             ceEEEEEEeCCCCEEEEEEEcC---CCCCCEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccc
Confidence            3556677775 48999999865   368999999 999999999         799999999999999975

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.23  E-value=3.4e-11  Score=98.79  Aligned_cols=58  Identities=19%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ..++.+++++ +|+|||+||...+  .+|+|.++ ||+++.||+         +.+||+||++|||||.+.
T Consensus        40 ~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~   97 (189)
T 3cng_A           40 KVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLP-AGFMENNET---------LVQGAARETLEEANARVE   97 (189)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEE
T ss_pred             ceEEEEEEEe-CCEEEEEEccCCC--CCCeEECc-eeeccCCCC---------HHHHHHHHHHHHHCCccc
Confidence            3467777777 7899999998754  48999999 999999999         799999999999999875

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.23  E-value=2.1e-11  Score=104.97  Aligned_cols=72  Identities=21%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             eEEEEEEEEE---eCCCeEEEEEecCCCCCCCCceeecCCccCCC--CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 027372          121 LHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY--RESELIEENALGVRNAAQRKLLDELGICAEDVP  195 (224)
Q Consensus       121 lHra~sv~lf---n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~--gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~  195 (224)
                      .+.++.++|+   +.+++|||.||..  ..++|.|.+| |||+++  ||+         +.+||+|||.|||||.+..  
T Consensus        21 p~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lP-GG~ve~~~gEs---------~~~AA~REl~EEtGl~~~~--   86 (240)
T 3gz5_A           21 QLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLP-GGFIDETCDES---------LEQTVLRKLAEKTAVVPPY--   86 (240)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECS-EEECCTTTCSB---------HHHHHHHHHHHHHSSCCSE--
T ss_pred             CccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECC-ccccCCCCCcC---------HHHHHHHHHHHHHCCCCCc--
Confidence            4556677776   4456999999984  3579999999 999999  999         7999999999999998742  


Q ss_pred             CCceeeeeEEEEEc
Q 027372          196 VDEFTPLGRILYKA  209 (224)
Q Consensus       196 ~~~l~~lgri~Y~a  209 (224)
                         +..++.+.+..
T Consensus        87 ---~~~l~~~~~~~   97 (240)
T 3gz5_A           87 ---IEQLCTVGNNS   97 (240)
T ss_dssp             ---EEEEEEEEESS
T ss_pred             ---eeeEEEeCCCc
Confidence               45666665543

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.23  E-value=1.5e-11  Score=99.67  Aligned_cols=56  Identities=14%  Similarity=0.084  Sum_probs=43.5

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +..++.+++. .+|++||.||.      +|.|.+| ||+++.||+         +.+||+||+.|||||.+..
T Consensus        15 ~~~~~~~ii~-~~~~vLL~~r~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~   70 (163)
T 3f13_A           15 LARRATAIIE-MPDGVLVTASR------GGRYNLP-GGKANRGEL---------RSQALIREIREETGLRINS   70 (163)
T ss_dssp             CEEEEEEECE-ETTEEEEEECC---------BBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCE
T ss_pred             ceEEEEEEEE-eCCEEEEEEEC------CCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCcccce
Confidence            3445555554 56788888885      5899999 999999999         7999999999999999754

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.23  E-value=6.2e-12  Score=106.02  Aligned_cols=66  Identities=23%  Similarity=0.174  Sum_probs=52.0

Q ss_pred             EEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCC-ChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEE
Q 027372          129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY  207 (224)
Q Consensus       129 lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gE-s~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y  207 (224)
                      +++.++++||+||      ++|+|.+| ||++++|| +         +.+||+||+.||||+.+..+.+..+.+++.+.+
T Consensus        51 i~~~~~~vLl~~r------~~g~w~~P-GG~ve~gE~t---------~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~  114 (212)
T 1u20_A           51 RVPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS---------LEEGLKRELEEELGPALATVEVTEDDYRSSQVR  114 (212)
T ss_dssp             TEECCEEEEEEEE------TTSCEECS-EEEECTTTSC---------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEE
T ss_pred             EEecCCEEEEEEe------CCCeEECC-CcccCCCCCC---------HHHHHHHHHHHHHCCCccccceeeeeEEEeccc
Confidence            4466789999999      48999999 99999999 9         799999999999999987543223345666655


Q ss_pred             Ecc
Q 027372          208 KAP  210 (224)
Q Consensus       208 ~a~  210 (224)
                      ..+
T Consensus       115 ~~~  117 (212)
T 1u20_A          115 EHP  117 (212)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            443

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.22  E-value=1.5e-11  Score=102.72  Aligned_cols=55  Identities=18%  Similarity=0.264  Sum_probs=48.4

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +.++.++|+++ |+|||+||.      +|.|.+| ||++++||+         +.+||+||++||+|+.+..
T Consensus        70 ~~~v~~vv~~~-~~vLLvrr~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~  124 (206)
T 3o8s_A           70 KLDTRAAIFQE-DKILLVQEN------DGLWSLP-GGWCDVDQS---------VKDNVVKEVKEEAGLDVEA  124 (206)
T ss_dssp             EEEEEEEEEET-TEEEEEECT------TSCEECS-EEECCTTSC---------HHHHHHHHHHHHHCEEEEE
T ss_pred             CccEEEEEEEC-CEEEEEEec------CCeEECC-eeccCCCCC---------HHHHHHHHHHHHHCCccee
Confidence            45677788874 899999997      6899999 999999999         7999999999999998753

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.20  E-value=2.2e-11  Score=101.59  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=55.5

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCC-CCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~-~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      .++.+++++.+|++||.||.... .++|+|.++ ||+++ .||+         +.+||+||+.|||||.+..     +.+
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~-~~~~~w~lP-gG~ve~~gEs---------~~~aa~REl~EEtGl~~~~-----~~~  107 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHT-YGRRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQAST-----WQV  107 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETT-TTEEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEEE-----EEE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCC-CCCcEEEeC-CccccCCCCC---------HHHHHHHHHHHHHCCcccc-----cEE
Confidence            47788889999999998877544 468999998 99999 9999         7999999999999998753     345


Q ss_pred             eeEE
Q 027372          202 LGRI  205 (224)
Q Consensus       202 lgri  205 (224)
                      ++.+
T Consensus       108 l~~~  111 (207)
T 1mk1_A          108 LVDL  111 (207)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.17  E-value=5.9e-11  Score=99.65  Aligned_cols=68  Identities=24%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             EEEEEEEEe-CCCeEEE--EEecCCCCC--CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          123 RAFSVFLFN-SKYELLL--QQRSGTKVT--FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       123 ra~sv~lfn-~~g~lLL--qqRs~~K~t--fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      .++.|++++ .+|++||  |.|...+..  .++.|.+| ||++++||+         +.+||+|||+||||+.+.     
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welP-gG~ve~gE~---------~~~aA~REl~EEtGl~~~-----  122 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVK-----  122 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCC-----
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeC-cccCCCCcC---------HHHHHHHHHHHHcCcccC-----
Confidence            478888898 5789888  445543221  25789998 999999999         799999999999999875     


Q ss_pred             ceeeeeEE
Q 027372          198 EFTPLGRI  205 (224)
Q Consensus       198 ~l~~lgri  205 (224)
                      .+.+++.+
T Consensus       123 ~~~~l~~~  130 (209)
T 1g0s_A          123 RTKPVLSF  130 (209)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEeEEE
Confidence            34566655

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.14  E-value=3.9e-11  Score=94.38  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             EEEEeC---CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHH-HHHHHHHHHHhC-CCcc
Q 027372          127 VFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR-NAAQRKLLDELG-ICAE  192 (224)
Q Consensus       127 v~lfn~---~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~-~AA~REL~EElG-I~~~  192 (224)
                      ++|.+.   +|++||+||.... .++|+|++| ||+++.||+         +. +||+||+.||+| +.+.
T Consensus        24 ~vi~~~~~~~~~vLl~~R~~~~-~~~g~w~~P-gG~~e~gE~---------~~~~a~~REl~EE~g~l~~~   83 (155)
T 1x51_A           24 CVLEQPGALGAQILLVQRPNSG-LLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRWAGPLPAT   83 (155)
T ss_dssp             EEEEEECSSSEEEEEEECCCCS-TTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHHSCCCCST
T ss_pred             EEEEecCCCCCEEEEEECCCCC-CCCceecCC-ccccCCCCC---------HHHHHHHHHHHHHhCCccee
Confidence            344454   5899999998754 589999999 999999999         65 999999999999 7654

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.14  E-value=8.7e-11  Score=97.85  Aligned_cols=66  Identities=26%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG  203 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg  203 (224)
                      ++.|++++++ ++||.+|.... ..+|.|++| ||++++||+         +.+||+|||+||||+.+..     +.+++
T Consensus        51 av~vl~~~~~-~vLLvrq~r~~-~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~-----~~~l~  113 (198)
T 1vhz_A           51 AVMIVPIVDD-HLILIREYAVG-TESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAND-----LTFLK  113 (198)
T ss_dssp             EEEEEEEETT-EEEEEEEEETT-TTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEEEE
T ss_pred             EEEEEEEECC-EEEEEEcccCC-CCCcEEEeC-cccCCCCcC---------HHHHHHHHHHHHHCCCcCc-----eEEEE
Confidence            6777778876 99888765432 468899998 999999999         7999999999999998753     45565


Q ss_pred             EEE
Q 027372          204 RIL  206 (224)
Q Consensus       204 ri~  206 (224)
                      .+.
T Consensus       114 ~~~  116 (198)
T 1vhz_A          114 KLS  116 (198)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            553

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.13  E-value=1e-10  Score=103.52  Aligned_cols=61  Identities=16%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      ...|.++.++|+ .+|++||+||...+  ++|+|.++ ||++++||+         +.+||+||++|||||.+.
T Consensus       205 ~~~~~~v~~vv~-~~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~v~  265 (352)
T 2qjt_B          205 KPNFVTVDALVI-VNDHILMVQRKAHP--GKDLWALP-GGFLECDET---------IAQAIIRELFEETNINLT  265 (352)
T ss_dssp             CCEEEEEEEEEE-ETTEEEEEEESSSS--STTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSCC
T ss_pred             CCCceEEEEEEE-ECCEEEEEEEcCCC--CCCeEECC-CCcCCCCCC---------HHHHHHHHHHHhhCCCcc
Confidence            356788888888 57899999998753  58999998 999999999         799999999999999976

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.10  E-value=1.7e-10  Score=101.90  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=51.0

Q ss_pred             EEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEE
Q 027372          128 FLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY  207 (224)
Q Consensus       128 ~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y  207 (224)
                      ++++.+|++||+||...+   +|+|+++ ||+++.||+         +++||+||+.||+||.+..     +.+++.+.+
T Consensus       145 v~v~~~~~vLL~rr~~~~---~g~w~lP-gG~vE~GEt---------~eeAa~REv~EEtGl~v~~-----~~~~~~~~~  206 (269)
T 1vk6_A          145 VAIRRDDSILLAQHTRHR---NGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN-----LRYVTSQPW  206 (269)
T ss_dssp             EEEEETTEEEEEEETTTC---SSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEEEEEEE
T ss_pred             EEEEeCCEEEEEEecCCC---CCcEECC-cCcCCCCCC---------HHHHHHHHHHHHhCceeee-----EEEEEEEec
Confidence            344557899999998653   6999998 999999999         7999999999999998753     456665544


Q ss_pred             E
Q 027372          208 K  208 (224)
Q Consensus       208 ~  208 (224)
                      .
T Consensus       207 ~  207 (269)
T 1vk6_A          207 P  207 (269)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.10  E-value=1.3e-10  Score=102.06  Aligned_cols=61  Identities=10%  Similarity=-0.024  Sum_probs=52.7

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ..+.++.+++++ +|++||+||...  .++|+|.++ ||++++||+         +.+||+||++||||+.+..
T Consensus       201 ~~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~  261 (341)
T 2qjo_A          201 PTFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALP-GGFIKQNET---------LVEGMLRELKEETRLKVPL  261 (341)
T ss_dssp             CCEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSSCH
T ss_pred             CCceEEEEEEEe-CCEEEEEEecCC--CCCCeEECC-CCcCCCCCC---------HHHHHHHHHhhhhCCcccc
Confidence            457788888884 789999999764  358999998 999999999         7999999999999999763

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.09  E-value=1.3e-10  Score=102.28  Aligned_cols=58  Identities=14%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             EEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          123 RAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       123 ra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      .++.++|+++ +|++||+||..    .||.|.++ |||+++||+         +.+||+||+.|||||.+..+
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEs---------~~eAA~REl~EEtGl~~~~l  160 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWK----ASSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSR  160 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESS----TTCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEEECCCCEEEEEEEeC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCceee
Confidence            4567888886 48999999965    37999999 999999999         79999999999999998753

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.08  E-value=2.8e-10  Score=99.69  Aligned_cols=60  Identities=22%  Similarity=0.321  Sum_probs=49.1

Q ss_pred             eEEEEEEEEEe--C---CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          121 LHRAFSVFLFN--S---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       121 lHra~sv~lfn--~---~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+.++.++|+.  .   +++|||++|...  .++|.|.++ ||++++||+         +.+||+|||.|||||.+.
T Consensus        38 p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~~AA~REl~EEtGl~v~  102 (273)
T 2fml_A           38 PSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVIS  102 (273)
T ss_dssp             CEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCC
T ss_pred             CceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECC-ccCCCCCcC---------HHHHHHHHHHHHHCCCCC
Confidence            34556666654  2   348999999875  478999999 999999999         799999999999998764

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.06  E-value=1.2e-10  Score=96.21  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             eEEEEEEEEEeC-CCeEEEEEecCCC----CC-CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          121 LHRAFSVFLFNS-KYELLLQQRSGTK----VT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       121 lHra~sv~lfn~-~g~lLLqqRs~~K----~t-fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      .|.++.++++++ +|++||.++....    .. .++.|.+| ||+++ ||+         +.+||+||+.||||+.+.  
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lP-gG~ve-gE~---------~~~aa~REl~EEtG~~~~--  110 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESC-AGLLD-NDE---------PEVCIRKEAIEETGYEVG--  110 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECE-EEECC-SSC---------HHHHHHHHHHHHC-CCCS--
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEec-ceEeC-CCC---------HHHHHHHHHHHHhCCccC--
Confidence            345788888985 5898887654311    11 57899999 99999 999         799999999999999975  


Q ss_pred             CCCceeeeeEE
Q 027372          195 PVDEFTPLGRI  205 (224)
Q Consensus       195 ~~~~l~~lgri  205 (224)
                         .+.+++.+
T Consensus       111 ---~~~~l~~~  118 (191)
T 3o6z_A          111 ---EVRKLFEL  118 (191)
T ss_dssp             ---CEEEEEEE
T ss_pred             ---cEEEEEEE
Confidence               34566654

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.02  E-value=4e-10  Score=102.69  Aligned_cols=60  Identities=12%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ..++.++|+|.+|++||+||...+ .++|+|++| ||+++.| +         +.+|++||+.||+||.+..
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~~g-~~~GlWefP-GG~ve~g-t---------~~~al~REl~EE~Gl~v~~  299 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDSTG-LLANLWEFP-SCETDGA-D---------GKEKLEQMVGEQYGLQVEL  299 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCSSS-TTTTCEECC-EEECSSS-C---------THHHHHHHHTTSSSCCEEE
T ss_pred             EEEEEEEEEeCCCEEEEEECCCCC-CcCCcccCC-CcccCCC-C---------cHHHHHHHHHHHhCCceee
Confidence            345556677889999999998755 499999999 9999999 8         5899999999999999864

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=98.97  E-value=3.7e-10  Score=96.70  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             eEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeC-CCeEEEEE--ecCCC---------------------
Q 027372           90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQ--RSGTK---------------------  145 (224)
Q Consensus        90 ~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~-~g~lLLqq--Rs~~K---------------------  145 (224)
                      .+.+.+.||+..   .|..      +    ..|.+|.|+++|. ++++||.|  |..-.                     
T Consensus        17 ~~~~~~~~G~~~---~~e~------v----~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~   83 (218)
T 3q91_A           17 NLYFQSMNGAQK---SWDF------M----KTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPR   83 (218)
T ss_dssp             -------------------------------CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC----------------
T ss_pred             EEEEECCCCCEE---EEEE------E----EcCCeEEEEEEECCCCEEEEEEcccccccccccccccccccccccccccc
Confidence            456667777642   3322      1    1267899999994 57888754  42210                     


Q ss_pred             -------CCCCCceeecCCccCCC-CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEE
Q 027372          146 -------VTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  205 (224)
Q Consensus       146 -------~tfPG~Wd~t~gGh~~~-gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri  205 (224)
                             ...++.|+++ ||++++ ||+         +.+||+|||+||||+.+.   ...+.+++.+
T Consensus        84 ~~~~~~~~~~~~~welP-gG~ve~~gEs---------~~eaA~REl~EEtGl~~~---~~~l~~l~~~  138 (218)
T 3q91_A           84 ELQPALPGSAGVTVELC-AGLVDQPGLS---------LEEVACKEAWEECGYHLA---PSDLRRVATY  138 (218)
T ss_dssp             ---------CCEEEECE-EEECCSSSCC---------HHHHHHHHHHHHHCBCCC---GGGCEEEEEE
T ss_pred             ccccccccCCCeEEECC-cceeCCCCCC---------HHHHHHHHHHHHhCCccc---cCceEEEEEE
Confidence                   1126799999 999999 999         799999999999999973   1345666664

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=98.97  E-value=7.9e-10  Score=99.62  Aligned_cols=63  Identities=21%  Similarity=0.172  Sum_probs=46.2

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcc
Q 027372          131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP  210 (224)
Q Consensus       131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~  210 (224)
                      +.+.++||.||..     .|.|.+| ||++++||+         +.+||+||++|||||.+..     ..+++.+.|..+
T Consensus        35 ~~~~~vLLv~r~~-----~g~W~lP-gG~ve~gEs---------~~~AA~REl~EEtGl~~~~-----~~~l~~~~~~~~   94 (364)
T 3fjy_A           35 LDSIEVCIVHRPK-----YDDWSWP-KGKLEQNET---------HRHAAVREIGEETGSPVKL-----GPYLCEVEYPLS   94 (364)
T ss_dssp             HTTEEEEEEEETT-----TTEEECC-EEECCTTCC---------HHHHHHHHHHHHHSCCEEE-----EEEEEEEC----
T ss_pred             CCceEEEEEEcCC-----CCCEECC-cCCCCCCCC---------HHHHHHHHHHHHhCCeeee-----ccccceEEEecc
Confidence            3445899999843     3899999 999999999         7999999999999998753     346676666665


Q ss_pred             cCC
Q 027372          211 SDG  213 (224)
Q Consensus       211 ~~~  213 (224)
                      .++
T Consensus        95 ~~g   97 (364)
T 3fjy_A           95 EEG   97 (364)
T ss_dssp             ---
T ss_pred             CCC
Confidence            443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=98.94  E-value=6.6e-10  Score=96.43  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             eeEEEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeecCCccCCCCCChh-----------hhhhhhcHHHHHHHHHHH
Q 027372          120 LLHRAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----------IEENALGVRNAAQRKLLD  185 (224)
Q Consensus       120 llHra~sv~lfn~-~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~-----------~~~~~~g~~~AA~REL~E  185 (224)
                      ..+.++-+++.+. +|  +|||+||+.....+||.|.++ ||+++++|+..           ..+....+..||+||++|
T Consensus         7 ~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fP-GG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E   85 (232)
T 3qsj_A            7 IRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFP-GGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE   85 (232)
T ss_dssp             EEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECS-EEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECC-ceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence            3444444444443 34  899999999988889999999 99999988731           112233468999999999


Q ss_pred             HhCCCcc
Q 027372          186 ELGICAE  192 (224)
Q Consensus       186 ElGI~~~  192 (224)
                      |+||.+.
T Consensus        86 E~Gl~l~   92 (232)
T 3qsj_A           86 EIGWLLA   92 (232)
T ss_dssp             HHSCCCS
T ss_pred             HhCceec
Confidence            9999864

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=98.81  E-value=2.3e-09  Score=89.58  Aligned_cols=58  Identities=17%  Similarity=0.044  Sum_probs=43.4

Q ss_pred             EEEEEEEE--eC--CCeEEEEE--ecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLF--NS--KYELLLQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lf--n~--~g~lLLqq--Rs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .++.|+.+  +.  ++++||.+  |..   ..++.|.+| ||++++||+         +.+||+|||+||||+.+..
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~~---~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~  125 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRPP---MGGYCIEFP-AGLIDDGET---------PEAAALRELEEETGYKGDI  125 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEGG---GTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEE
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecCC---CCCcEEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc
Confidence            35665543  32  24777755  432   246799998 999999999         7999999999999998753

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=98.76  E-value=1.8e-08  Score=89.37  Aligned_cols=42  Identities=12%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372          135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  191 (224)
Q Consensus       135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~  191 (224)
                      ++||+||..     +|.|.++ |||+++||+         +.+||+|||.||||+.+
T Consensus       140 ~vLl~~r~~-----~g~W~lP-GG~Ve~GEs---------~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecC-----CCcEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCcc
Confidence            599999975     3899999 999999999         79999999999999984

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=98.74  E-value=9.3e-09  Score=87.67  Aligned_cols=44  Identities=25%  Similarity=0.267  Sum_probs=38.8

Q ss_pred             CeEEEEEecCCCCCCCCceeecCCccCCCCC-ChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          134 YELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       134 g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gE-s~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +++||++|.      +|.|.+| ||+++.|| +         +.+||+||++||||+.+..
T Consensus        65 ~~~ll~~r~------~g~w~lP-GG~ve~gE~t---------~~eaa~REl~EEtGl~~~~  109 (217)
T 2xsq_A           65 YAILMQMRF------DGRLGFP-GGFVDTQDRS---------LEDGLNRELREELGEAAAA  109 (217)
T ss_dssp             EEEEEEEET------TSCEECS-EEECCTTCSS---------HHHHHHHHHHHHHCGGGGG
T ss_pred             CcEEEEEcc------CCeEECC-ceecCCCCCC---------HHHHHHHHHHHHHCCCCcc
Confidence            357777774      7899999 99999999 8         7999999999999999874

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.43  E-value=1.1e-07  Score=82.01  Aligned_cols=69  Identities=22%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             eEEEEEEEEEeCC-C----------eEEEEEecCCCCCCCCceeecCCccCCCCC-ChhhhhhhhcHHHHHHHHHHHHhC
Q 027372          121 LHRAFSVFLFNSK-Y----------ELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELG  188 (224)
Q Consensus       121 lHra~sv~lfn~~-g----------~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gE-s~~~~~~~~g~~~AA~REL~EElG  188 (224)
                      |..+.++++.-++ +          .+|+|.|      |.|.|++| ||++++|| +         +++|.+|||.||+|
T Consensus        20 ~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R------~~G~weFP-GGkVe~gE~t---------~e~aL~REl~EElg   83 (214)
T 3kvh_A           20 WSHSCHAMLYAANPGQLFGRIPMRFSVLMQMR------FDGLLGFP-GGFVDRRFWS---------LEDGLNRVLGLGLG   83 (214)
T ss_dssp             CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEE------TTSCEECS-EEEECTTTCC---------HHHHHHHSCCSCC-
T ss_pred             ccEeeEEEEEcCCccccccccchhheEEEeee------eCCEEeCC-CccCCCCCCC---------HHHHHHHHHHHhhC
Confidence            5556677777543 2          3889998      56999999 99999999 7         79999999999999


Q ss_pred             C-CccCCCCCceeeeeEEEEEcc
Q 027372          189 I-CAEDVPVDEFTPLGRILYKAP  210 (224)
Q Consensus       189 I-~~~~v~~~~l~~lgri~Y~a~  210 (224)
                      + .+.     ...++..+.+.+|
T Consensus        84 ~~~V~-----~~~y~~s~~~~yp  101 (214)
T 3kvh_A           84 CLRLT-----EADYLSSHLTEGP  101 (214)
T ss_dssp             --CCC-----GGGEEEEEEC---
T ss_pred             Ceeee-----eeeeEEEEeccCC
Confidence            7 343     2234555544443

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.09  E-value=6.4e-06  Score=71.09  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=48.5

Q ss_pred             cCCeeEEEEEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 027372          117 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC  190 (224)
Q Consensus       117 ~~gllHra~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~  190 (224)
                      +.|+...+..|++.+..+  +|||-|+..      +.|.++ ||.+++||+         ..+|.+|||.||+|+.
T Consensus        54 ~~g~R~sV~avil~~~~~~phVLLlq~~~------~~f~LP-GGkle~gE~---------~~eaL~REL~EELg~~  113 (208)
T 3bho_A           54 KIGMRRTVEGVLIVHEHRLPHVLLLQLGT------TFFKLP-GGELNPGED---------EVEGLKRLMTEILGRQ  113 (208)
T ss_dssp             HHCSEEEEEEEEEEEETTEEEEEEEEEET------TEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCC
T ss_pred             hhCCceEEEEEEEEcCCCCcEEEEEEcCC------CcEECC-CcccCCCCC---------HHHHHHHHHHHHhCCC
Confidence            458888888888887766  688777743      489999 999999999         5999999999999973

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=97.46  E-value=6.9e-05  Score=67.71  Aligned_cols=49  Identities=10%  Similarity=0.030  Sum_probs=36.2

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHh-CCCccC
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL-GICAED  193 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EEl-GI~~~~  193 (224)
                      ++++++. .+|+|||+    .   -.| |.+| ||+++.+++           ++|+||++||+ |+.++.
T Consensus       185 ~vgaii~-~~g~vLL~----~---~~G-W~LP-G~~~~~~~~-----------~~a~RE~~EEttGl~v~~  234 (321)
T 3rh7_A          185 RLGAVLE-QQGAVFLA----G---NET-LSLP-NCTVEGGDP-----------ARTLAAYLEQLTGLNVTI  234 (321)
T ss_dssp             EEEEEEE-SSSCEEEB----C---SSE-EBCC-EEEESSSCH-----------HHHHHHHHHHHHSSCEEE
T ss_pred             eEEEEEE-ECCEEEEe----e---CCC-ccCC-cccCCCChh-----------HHHHHHHHHHhcCCEEee
Confidence            3556665 46999998    1   248 9999 776544433           59999999997 999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	7e-16
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	9e-14
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	3e-13
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-04

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 70.2 bits (171), Expect = 7e-16
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 92  ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
            +V+E + V+   ++             L HRA  + + +   ++L+Q+R+ TK   P +
Sbjct: 6   DIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGM 59

Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
              T        E             +A+R+  +ELGI         F   G+  ++  +
Sbjct: 60  LDATAGGVVQADEQL---------LESARREAEEELGIAGVP-----FAEHGQFYFEDKN 105

Query: 212 DGKWG 216
              WG
Sbjct: 106 CRVWG 110

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (155), Expect = 9e-14
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 180
           LH AFS +LFN+K +LL+ +R+ +K  +P VWTN+ C HP   ES           +A  
Sbjct: 1   LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVI 51

Query: 181 RKLLDELGICAED 193
           R+   ELG+    
Sbjct: 52  RRCRYELGVEITP 64

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 24/132 (18%)

Query: 91  CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 150
             LV+E D VVG   + +  L           R  + FL NS+ +L + +RS +K  FP 
Sbjct: 3   LDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPN 56

Query: 151 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV---------PVDEFTP 201
               +        E+            A +R+  +EL +  + +         P      
Sbjct: 57  ALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 107

Query: 202 LGRILYKAPSDG 213
               +Y+  SD 
Sbjct: 108 SFMCVYELRSDA 119

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQR 181
            RA  V L N + ++LL Q  G              S  +  + E  ++        A R
Sbjct: 12  LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVE-DGENPQDA-------AVR 63

Query: 182 KLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
           +  +E G+    V       LG  L + P       H
Sbjct: 64  EACEETGLRVRPV-----KFLGAYLGRFPDGVLILRH 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.95
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.94
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.9
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.64
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.6
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.53
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.53
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.52
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.46
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.4
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.38
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.37
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.36
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.34
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.31
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.26
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.25
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.23
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.22
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.22
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.16
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.1
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	98.97
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	98.89
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	98.89
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	98.82
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	98.57
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.39
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	98.21
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.17

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.4e-28  Score=194.14  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=94.4

Q ss_pred             cCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChh
Q 027372           88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL  167 (224)
Q Consensus        88 eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~  167 (224)
                      .|.++|||++|+++|..+|..+|.      .|++|++++|+|+|++|++|||||+..|.+|||+|++++|||+++||+  
T Consensus         2 ~E~~~i~d~~~~~ig~~~R~~~~~------~~~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs--   73 (161)
T d2fkba1           2 TEWVDIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ--   73 (161)
T ss_dssp             CCEEEEECTTSCEEEEEEHHHHHH------HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC--
T ss_pred             cEEEEEECCCCCEEeEEEHHHhhc------CCCcEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCc--
Confidence            479999999999999999999885      599999999999999999999999999999999999999999999999  


Q ss_pred             hhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEccc
Q 027372          168 IEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS  211 (224)
Q Consensus       168 ~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~  211 (224)
                             +.+||+||++|||||...     .+.+++.+.|..+.
T Consensus        74 -------~~~aa~REl~EE~Gi~~~-----~~~~~~~~~~~~~~  105 (161)
T d2fkba1          74 -------LLESARREAEEELGIAGV-----PFAEHGQFYFEDKN  105 (161)
T ss_dssp             -------HHHHHHHHHHHHHCCBSC-----CCEEEEEEEEEETT
T ss_pred             -------HHHHHHHHHHHHhCCccc-----eeEEEEEEEeecCC
Confidence                   799999999999999864     35677777776543

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.94  E-value=5.8e-27  Score=188.38  Aligned_cols=90  Identities=27%  Similarity=0.272  Sum_probs=79.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhh
Q 027372           89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELI  168 (224)
Q Consensus        89 E~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~  168 (224)
                      |.+||||++|+++|.++|..+|.      .|++|++++++|+|++|++|||||+..|..|||+|++++|||+++||+   
T Consensus         1 E~~d~vd~~~~~~g~~~r~~~~~------~~~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs---   71 (162)
T d2o5fa1           1 ERLDLVNERDEVVGQILRTDPAL------RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET---   71 (162)
T ss_dssp             CEEEEECTTSCEEEEEETTCTTC------CGGGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCC---
T ss_pred             CcEEEECCCCCEEEEEEHHHHhh------CCCeEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCC---
Confidence            68999999999999999999884      699999999999999999999999999999999999999999999999   


Q ss_pred             hhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          169 EENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       169 ~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                            +.+||+||+.|||||+++.
T Consensus        72 ------~~eaa~REl~EE~Gl~~~~   90 (162)
T d2o5fa1          72 ------YEEAFRREAREELNVEIDA   90 (162)
T ss_dssp             ------HHHHHHHHHHHHHCCCGGG
T ss_pred             ------hhhhhhhhhhheeCcceee
Confidence                  7999999999999999864

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.5e-24  Score=171.41  Aligned_cols=91  Identities=35%  Similarity=0.495  Sum_probs=79.5

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      +||||+|+|+|++|++|||||+..|.+|||+|++++|||+++||+         +.+||+||+.|||||++..+.    .
T Consensus         1 lHra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt---------~~eaa~RE~~EE~Gi~~~~~~----~   67 (153)
T d1hzta_           1 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVIRRCRYELGVEITPPE----S   67 (153)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC---------HHHHHHHHHHHHHCCCBSCCE----E
T ss_pred             CceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCc---------HHHHHHHHHHHHcCceeeccc----c
Confidence            699999999999999999999999999999999988999999999         799999999999999976431    1


Q ss_pred             eeeEEEEEcccCCCeeeeeeeeeC
Q 027372          201 PLGRILYKAPSDGKWGEHERNVFI  224 (224)
Q Consensus       201 ~lgri~Y~a~~~~~wgEhEidyil  224 (224)
                      ....++|.+..++++++++++++|
T Consensus        68 ~~~~~~y~~~~~~~~~~~~~~~~~   91 (153)
T d1hzta_          68 IYPDFRYRATDPSGIVENEVCPVF   91 (153)
T ss_dssp             EETTCEEEEECTTSCEEEEECCEE
T ss_pred             eeccccccccccccccceeEEEEE
Confidence            234567887777788899888764

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.64  E-value=4.4e-16  Score=121.83  Aligned_cols=77  Identities=26%  Similarity=0.301  Sum_probs=64.4

Q ss_pred             eeEEEEEEEEEeCCCeEEEEEecCCC--CCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          120 LLHRAFSVFLFNSKYELLLQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       120 llHra~sv~lfn~~g~lLLqqRs~~K--~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      ..|++++++++|++|++||+||+..+  ..++|+|+++ ||+++.||+         +.+||+||++|||||.++.    
T Consensus        10 ~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~----   75 (158)
T d1sjya_          10 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRP----   75 (158)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEE----
T ss_pred             CceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcccee----
Confidence            36889999999999999999998654  4568999999 999999999         7999999999999998753    


Q ss_pred             ceeeeeEEEEEccc
Q 027372          198 EFTPLGRILYKAPS  211 (224)
Q Consensus       198 ~l~~lgri~Y~a~~  211 (224)
                       +.+++.+.+..++
T Consensus        76 -~~~i~~~~~~~~~   88 (158)
T d1sjya_          76 -VKFLGAYLGRFPD   88 (158)
T ss_dssp             -EEEEEEEEEECTT
T ss_pred             -eEEEEEEEEECCC
Confidence             4677777776654

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.4e-15  Score=119.61  Aligned_cols=75  Identities=19%  Similarity=0.102  Sum_probs=62.9

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      ...++.++|+|.+|++||+||+..  .++|.|.++ |||+++||+         +.+||+||++|||||.++.   .++.
T Consensus        17 p~~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~---~~~~   81 (160)
T d1ryaa_          17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPI---TAGQ   81 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCCG---GGSE
T ss_pred             CEEEEEEEEEeCCCeEEEEEeCCC--CCCCcEecc-cccccCCCc---------HHHHHHHHHHHHhCceEee---eeee
Confidence            346788999999999999999764  489999998 999999999         7999999999999999763   3456


Q ss_pred             eeeEEEEEcc
Q 027372          201 PLGRILYKAP  210 (224)
Q Consensus       201 ~lgri~Y~a~  210 (224)
                      +++.+.|..+
T Consensus        82 ~~~~~~~~~~   91 (160)
T d1ryaa_          82 FYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEecc
Confidence            6766666554

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=4.8e-15  Score=112.93  Aligned_cols=73  Identities=19%  Similarity=0.284  Sum_probs=57.8

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      ++-++ .+|+|.+|++||+||+..+ .+||+|++| |||++.||+         +.+||+||++||||+.++..     .
T Consensus         4 i~vav-~ii~~~~~~vLl~~R~~~~-~~~g~W~~P-gG~ve~gEs---------~~~a~~RE~~EE~gl~~~~~-----~   66 (129)
T d1puna_           4 LQIAV-GIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHF-----S   66 (129)
T ss_dssp             EEEEE-EECBCTTSCEEEBCCCSSC-SCTTCCBCS-CCSCTTTSC---------TTHHHHHHHHHTTCSCCCCC-----C
T ss_pred             cEEEE-EEEEECCCEEEEEEecCCC-CCCCcEECC-cceecCCCc---------hhHHHHHHHHHHhCCccccc-----e
Confidence            44454 4467888999999998765 589999999 999999999         68999999999999998643     3


Q ss_pred             eeeEEEEEcc
Q 027372          201 PLGRILYKAP  210 (224)
Q Consensus       201 ~lgri~Y~a~  210 (224)
                      +++.+.|..+
T Consensus        67 ~~~~~~~~~~   76 (129)
T d1puna_          67 LFEKLEYEFP   76 (129)
T ss_dssp             CSEEEEEECS
T ss_pred             eeeEEeeccc
Confidence            4555555443

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-14  Score=112.90  Aligned_cols=76  Identities=17%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372          122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP  201 (224)
Q Consensus       122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~  201 (224)
                      +|.++++++..+|++||++|...  .+.|+|.++ |||++.||+         +.+||+||++|||||.+..     +.+
T Consensus         4 ~r~~~~v~i~~~~~vLL~~r~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~~   66 (156)
T d1irya_           4 SRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDA-----LHK   66 (156)
T ss_dssp             CEEEEEECEECSSEEEEEEESSS--SSBTCEECB-CCBCCTTCC---------HHHHHHHHHHHHHSCCBSC-----CCE
T ss_pred             cEEEEEEEEEECCEEEEEEecCC--CCCCEEECc-EeEecCCCC---------HHHHHHHHHHHHHCCcccc-----eEE
Confidence            56778777778899999999754  467999999 999999999         7999999999999998753     356


Q ss_pred             eeEEEEEcccCCC
Q 027372          202 LGRILYKAPSDGK  214 (224)
Q Consensus       202 lgri~Y~a~~~~~  214 (224)
                      ++.+.+..+..+.
T Consensus        67 ~~~~~~~~~~~~~   79 (156)
T d1irya_          67 VGQIVFEFVGEPE   79 (156)
T ss_dssp             EEEEEEEETTCSC
T ss_pred             EEEEEEEcCCCCE
Confidence            6666666655443

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.52  E-value=1.1e-14  Score=116.17  Aligned_cols=61  Identities=25%  Similarity=0.352  Sum_probs=54.8

Q ss_pred             CCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          118 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +| +..+|.++|+|.+|++||+||+.    .||.|.++ ||+++.||+         +.+||+||+.|||||.+..
T Consensus        11 ~~-yR~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~P-gG~ve~gEt---------~~~Aa~REl~EEtGl~~~~   71 (165)
T d1jkna_          11 EG-YRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAE   71 (165)
T ss_dssp             SS-EEEEEEEEEECTTSCEEEEEESS----STTCEECC-EECCCTTCC---------HHHHHHHHHHHHTCCCSEE
T ss_pred             CC-ccccEEEEEEeCCCEEEEEEEcC----CCCcccCc-cceEcCCCC---------hhHHHHHHHHHhhcccccc
Confidence            45 56789999999999999999985    47999999 999999999         7999999999999999754

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=8.4e-14  Score=106.26  Aligned_cols=67  Identities=33%  Similarity=0.413  Sum_probs=56.1

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL  202 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l  202 (224)
                      -+++++|+|+++++||+||.      .|.|.+| |||++.||+         +.+||+||++|||||.++.     +.++
T Consensus         3 v~agavv~~~~~~vLl~~~~------~g~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGi~~~~-----~~~~   61 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR------MGFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEV-----LLPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT------TSCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred             EEEEEEEEECCCEEEEEEcC------CCCEECC-ccccCCCCC---------HHHHHHHHHHHHcCCeeEE-----EEEE
Confidence            46788999999999999874      3789999 999999999         7999999999999998753     4566


Q ss_pred             eEEEEEcc
Q 027372          203 GRILYKAP  210 (224)
Q Consensus       203 gri~Y~a~  210 (224)
                      +.+.|..+
T Consensus        62 ~~~~~~~~   69 (126)
T d1vcda1          62 YPTRYVNP   69 (126)
T ss_dssp             EEEEEECT
T ss_pred             eeeeeccC
Confidence            66666554

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.40  E-value=5e-13  Score=105.04  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             eEEEEE-EEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          121 LHRAFS-VFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       121 lHra~s-v~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      .+.+++ |+|+|. ++++||++|+..+..+ |.|++| |||+++||+         +.+||+||++|||||.+..     
T Consensus         6 ~~~~~~~~~i~~~~~~~lLl~~R~~~~~~~-~~w~~P-GG~ve~gEs---------~~~aa~RE~~EEtGl~v~~-----   69 (155)
T d2b06a1           6 LTILTNICLIEDLETQRVVMQYRAPENNRW-SGYAFP-GGHVENDEA---------FAESVIREIYEETGLTIQN-----   69 (155)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEC-----C-CEEECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEES-----
T ss_pred             cEEEEEEEEEEECCCCEEEEEEECCCCCCC-CcEECc-eeEEcCCCC---------HHHHHHHHHHHhcCeeEee-----
Confidence            444444 445664 4589999999876544 669998 999999999         7999999999999999864     


Q ss_pred             eeeeeEEEEEcc
Q 027372          199 FTPLGRILYKAP  210 (224)
Q Consensus       199 l~~lgri~Y~a~  210 (224)
                      ..+++.+.|...
T Consensus        70 ~~~~~~~~~~~~   81 (155)
T d2b06a1          70 PQLVGIKNWPLD   81 (155)
T ss_dssp             CEEEEEEEEECT
T ss_pred             eEEEEEEEeecC
Confidence            245555555443

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.38  E-value=1e-12  Score=100.89  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=58.1

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT  200 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~  200 (224)
                      .|-+|.++|. .+|++||.||....  +.|.|.+| |||++.||+         +.+||+||++|||||.+..     ..
T Consensus         2 P~v~va~ii~-~~~k~Llv~r~~~~--~~~~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~   63 (146)
T d2b0va1           2 PNVTVAAVIE-QDDKYLLVEEIPRG--TAIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLP-----EV   63 (146)
T ss_dssp             CEEEEEEECE-ETTEEEEEEECSSS--SCCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred             CeEEEEEEEE-eCCEEEEEEEecCC--CCCEEECC-eeeECCCCC---------HHHHHHHHHHHhheeeccc-----ce
Confidence            3566766665 56999999998753  57899999 999999999         7999999999999999753     24


Q ss_pred             eeeEEEEEcccCC
Q 027372          201 PLGRILYKAPSDG  213 (224)
Q Consensus       201 ~lgri~Y~a~~~~  213 (224)
                      +++.+.+..+.++
T Consensus        64 ~~~~~~~~~~~~~   76 (146)
T d2b0va1          64 LTGIYHWTCASNG   76 (146)
T ss_dssp             EEEEEEEEETTTT
T ss_pred             EEEEEEEecCCCC
Confidence            5555555554443

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.37  E-value=6e-13  Score=109.48  Aligned_cols=66  Identities=21%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             CeeEEEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          119 NLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       119 gllHra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ...|.||.|.++++ +.+|||+||+.....+||.|.+| ||+++.||+         +.+||+||+.||+||..+.+
T Consensus        29 ~~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fP-GG~~e~~E~---------~~~aAlRE~~EE~Gl~~~~~   95 (187)
T d1nqza_          29 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAAV   95 (187)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGC
T ss_pred             CCCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCC-ccccccCCc---------hhHHHHHHHHHhhcccccee
Confidence            45677787777753 44799999999988899999999 999999999         68999999999999998654

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.36  E-value=1e-12  Score=99.41  Aligned_cols=58  Identities=29%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             EEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          123 RAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       123 ra~sv~lfn~-~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      |+++++|++. ++  ++||.||+..    ||.|.+| ||+++.||+         +.+||+||++|||||.+..+
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~~----~g~W~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~   63 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASYP----PHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQL   63 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESST----TCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGE
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcCC----CCcEeCc-ccccccCCC---------HHHHHHHHHHHHhCCcceee
Confidence            6777777752 23  6888888753    6999999 999999999         79999999999999998643

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.6e-12  Score=100.10  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      ++.++.+++.+ ++++||+||...   .+|+|.++ |||+++||+         +.+||+||++||||+.+..
T Consensus         2 i~paViv~i~~-~~~vLL~~~~~~---~~g~w~lp-GG~ve~GEt---------~~~aa~REl~EEtG~~~~~   60 (131)
T d1vk6a2           2 IAPCIIVAIRR-DDSILLAQHTRH---RNGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN   60 (131)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEETTT---CSSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE
T ss_pred             cccEEEEEEEe-CCEEEEEEeccC---CCCCEecc-cCCCcCCCc---------HHHHHHHHHHHHhCCcccc
Confidence            35677666665 578999988643   36899999 999999999         7999999999999998753

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.31  E-value=1.7e-12  Score=102.39  Aligned_cols=60  Identities=25%  Similarity=0.250  Sum_probs=48.9

Q ss_pred             eEEEEEEEEE--eCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372          121 LHRAFSVFLF--NSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE  192 (224)
Q Consensus       121 lHra~sv~lf--n~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~  192 (224)
                      .+-+|.++||  +++ .++||+||+..  .++|.|.+| ||+++.||+         +.+||+||+.|||||.+.
T Consensus         9 ~~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lP-GG~ie~~Es---------~~~aa~REl~EEtGl~~~   71 (147)
T d2fb1a2           9 FYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENV   71 (147)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSC
T ss_pred             cceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCc-EeeecCCCC---------HHHHHHHHHHHHhCCccc
Confidence            3446666665  333 37999999765  478999999 999999999         799999999999999875

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.26  E-value=7.4e-12  Score=97.78  Aligned_cols=56  Identities=14%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       124 a~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +.+++|+|.+ +++||.||...    +|.|.+| |||++.||+         +.+||+||+.|||||++..
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~----~~~W~lP-gG~ie~gEs---------~~~aa~RE~~EEtGi~~~~   60 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKA----SSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSS   60 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESST----TCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTT
T ss_pred             EEEEEEEECCCCEEEEEEEeCC----CCCEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcee
Confidence            4577889876 58999888643    5789999 999999999         7999999999999998764

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.6e-12  Score=97.93  Aligned_cols=57  Identities=33%  Similarity=0.357  Sum_probs=48.9

Q ss_pred             EEEEEEEE---------eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLF---------NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lf---------n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      |++++++|         |.++++||.||+..+    +.|++| |||++.||+         +.+||+||++||+|+....
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~----~~W~lP-gG~ie~gEt---------~~~aa~REl~EEtG~~~~~   74 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGI----HHWTPP-KGHVEPGED---------DLETALRATQEEAGIEAGQ   74 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESSTT----CCEECC-EEECCSSSC---------HHHHHHHHHHHTTSCCTTT
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecCCC----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCccce
Confidence            66677777         466799999998764    579999 999999999         7999999999999999864

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=8.8e-12  Score=95.80  Aligned_cols=56  Identities=18%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .++.++|+|.++++||.+|..     .|.|.+| |||++.||+         +.+||+||+.|||||++..
T Consensus        18 ~~~~~vi~~~~~~~lll~~~~-----~~~w~lP-gG~ie~gEs---------~~~aa~RE~~EEtGl~~~~   73 (147)
T d2azwa1          18 YAAYIIVSKPENNTMVLVQAP-----NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEI   73 (147)
T ss_dssp             CEEEEECEEGGGTEEEEEECT-----TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE
T ss_pred             CeEEEEEEECCCCEEEEEEcC-----CCeEECc-EeEeCCCCC---------HHHHHHHHHHhhhceeeee
Confidence            467778888877644444432     2689999 999999999         7999999999999998753

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=93.18  Aligned_cols=61  Identities=26%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             CCeeEEEEEEEEEeC--CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          118 LNLLHRAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       118 ~gllHra~sv~lfn~--~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      .|.-+++ ++++++.  ++.+||.+|..    .||.|.++ |||++.||+         +.+||+||+.|||||.+..
T Consensus         8 ~~~r~~a-~~vv~~~~~~~~~lL~~~~~----~~~~W~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~   70 (135)
T d2fvva1           8 DGYKKRA-ACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTL   70 (135)
T ss_dssp             TSCEEEE-EEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE
T ss_pred             CCCceEE-EEEEEEecCCCEEEEEEEeC----CCCcEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccee
Confidence            4655554 5566653  34566666653    47999998 999999999         7999999999999998753

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.22  E-value=4.9e-12  Score=96.69  Aligned_cols=53  Identities=25%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       126 sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      +++|++ +|++||+||.     .+|.|.+| ||+++.||+         +.+||+||++|||||.++.+
T Consensus         5 ~~vi~~-d~kvLl~~r~-----~~~~w~lP-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~   57 (152)
T d1k2ea_           5 SGVLVE-NGKVLLVKHK-----RLGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPI   57 (152)
T ss_dssp             EEECEE-TTEEEEEECT-----TTCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEC
T ss_pred             EEEEEE-CCEEEEEEEc-----CCCeEECC-eeEEeCCcc---------HHHHHHHHHHHHHCCceeee
Confidence            344444 5899999985     46899999 999999999         79999999999999987643

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=3.6e-11  Score=99.60  Aligned_cols=60  Identities=23%  Similarity=0.374  Sum_probs=48.2

Q ss_pred             EEEEEEEE--EeCCC---eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          122 HRAFSVFL--FNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       122 Hra~sv~l--fn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +-++.++|  ++.++   +|||.||+..  .+.|.|.+| ||+++.||+         +.+||+||++|||||.+..
T Consensus        37 ~v~vd~vi~~~~~~~~~l~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~eaa~REl~EEtGl~~~~  101 (202)
T d2fmla2          37 SLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQ  101 (202)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCG
T ss_pred             ccEEEEEEEEEecCCCeeEEEEEEecCC--CCCCcEECC-EEeecCCCC---------HHHHhhhhhHhhcCeeeec
Confidence            34455444  45543   6999999754  578999999 999999999         7999999999999998753

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.10  E-value=5.8e-11  Score=90.75  Aligned_cols=57  Identities=12%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372          125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED  193 (224)
Q Consensus       125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~  193 (224)
                      +..+|.|++|++||+||...+ .++|+|++| ||+++.+|+          .+++.||+.||+||++..
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~-~~~GlWefP-~g~~e~~~~----------~e~l~rel~ee~gi~v~~   63 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTG-LLANLWEFP-SCETDGADG----------KEKLEQMVGEQYGLQVEL   63 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSS-TTTTCEECC-EEECTTTCC----------HHHHHHTTC----CEEEE
T ss_pred             EEEEEEECCCEEEEEECCCCC-CCCCceecc-cccccCCCC----------HHHHHHHhhhhcceEEEe
Confidence            344567999999999998765 599999999 999987777          689999999999998764

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.97  E-value=6.1e-10  Score=92.81  Aligned_cols=64  Identities=22%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             CCeeEEEEEEEEEeCCC-----------eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHH
Q 027372          118 LNLLHRAFSVFLFNSKY-----------ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE  186 (224)
Q Consensus       118 ~gllHra~sv~lfn~~g-----------~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EE  186 (224)
                      .| ++.+++++|+.+++           .+|+|+|      +.|.|.+| ||+++.||++        .++||.||+.||
T Consensus        17 ~g-~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r------~~g~~~~p-gg~~~~~e~~--------~~~~~~re~~ee   80 (196)
T d1u20a1          17 EG-YKHACHALLHAPSQAKLFDRVPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS--------LEEGLKRELEEE   80 (196)
T ss_dssp             SS-CEEEEEEEEEEECCCEETTTEECCEEEEEEEE------TTSCEECS-EEEECTTTSC--------HHHHHHHHHHHH
T ss_pred             CC-cceEEEEEEEcCCCceEEEEecCCcEEEEEEe------cCCcEECC-ccccCCCCCc--------HHHHHHHHHHHH
Confidence            46 44466777765433           4788888      46999999 9999999974        578999999999


Q ss_pred             hCCCccCCCCC
Q 027372          187 LGICAEDVPVD  197 (224)
Q Consensus       187 lGI~~~~v~~~  197 (224)
                      +|+.+..+.+.
T Consensus        81 ~g~~~~~~~l~   91 (196)
T d1u20a1          81 LGPALATVEVT   91 (196)
T ss_dssp             HCGGGGGCCCC
T ss_pred             hCccceeEEEE
Confidence            99998765443

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=1.4e-09  Score=86.58  Aligned_cols=56  Identities=16%  Similarity=0.115  Sum_probs=43.4

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372          124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA  191 (224)
Q Consensus       124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~  191 (224)
                      ++.+++++ +|++||.++-... .....|.+| ||+++.||+         +.+||+||+.||||+..
T Consensus        26 aV~vl~~~-~~~vlLv~q~R~~-~~~~~~elP-~G~ve~gE~---------~~~aA~REl~EEtG~~~   81 (158)
T d1v8ya_          26 AVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGLSG   81 (158)
T ss_dssp             EEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSEEE
T ss_pred             EEEEEEEE-CCEEEEEEeeecC-CCCceEecc-hhhccccCC---------HHHHHHHHHHhhcCCcc
Confidence            56677776 6888886542211 123589998 999999999         79999999999999975

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=1.1e-09  Score=90.92  Aligned_cols=65  Identities=15%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             EEEEEEEEeCCCeEEEEEe--cCCCCCCCCceeecCCccCC-CCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCce
Q 027372          123 RAFSVFLFNSKYELLLQQR--SGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF  199 (224)
Q Consensus       123 ra~sv~lfn~~g~lLLqqR--s~~K~tfPG~Wd~t~gGh~~-~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l  199 (224)
                      .+|.|+.++++|++||.++  ...+   ...|.+| ||+++ +||+         +.+||+|||+||||+...     ++
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~~~~---~~~welP-aG~ie~~gE~---------~~~aA~REl~EETG~~~~-----~~  100 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRHTYG---RRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQAS-----TW  100 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTT---EEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEE-----EE
T ss_pred             CeEEEEEECCCCEEEEEEecccccC---ceEEecc-ccccccCCCC---------HHHHHHHHHhhccccccc-----cc
Confidence            3677888899999888764  3322   2479998 99998 7999         799999999999999864     45


Q ss_pred             eeeeEE
Q 027372          200 TPLGRI  205 (224)
Q Consensus       200 ~~lgri  205 (224)
                      .+++.+
T Consensus       101 ~~l~~~  106 (202)
T d1mqea_         101 QVLVDL  106 (202)
T ss_dssp             EEEEEE
T ss_pred             eEeeee
Confidence            677765

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.9e-09  Score=88.02  Aligned_cols=56  Identities=29%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             CCCeEEEEE--ecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEE
Q 027372          132 SKYELLLQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI  205 (224)
Q Consensus       132 ~~g~lLLqq--Rs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri  205 (224)
                      .+++++|.+  |...   -...|.+| ||++++||+         +.+||+|||.||||+.+.     ++.+++.+
T Consensus        57 ~~~~vlLvrq~R~~~---~~~~~elP-~G~ie~gE~---------p~~aA~REl~EEtG~~~~-----~~~~l~~~  114 (186)
T d1vhza_          57 VDDHLILIREYAVGT---ESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAN-----DLTFLKKL  114 (186)
T ss_dssp             ETTEEEEEEEEETTT---TEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEE-----EEEEEEEE
T ss_pred             cCCEEEEEEeeecCC---CceEeecc-cccCCCCcC---------HHHHHHHHHHHHhccccc-----cceeccee
Confidence            366766654  4332   23579999 999999999         799999999999999875     45677766

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.1e-07  Score=79.22  Aligned_cols=68  Identities=22%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             EEEEEEEEeCC-CeEEEEE--ecCCCCC--CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372          123 RAFSVFLFNSK-YELLLQQ--RSGTKVT--FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD  197 (224)
Q Consensus       123 ra~sv~lfn~~-g~lLLqq--Rs~~K~t--fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~  197 (224)
                      .++.+++++++ ++++|.+  |..-...  -+-.|.++ +|++++||+         +.+||+|||.||||+.+.     
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElP-AG~id~gE~---------p~~aA~REL~EEtG~~~~-----  122 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVK-----  122 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCC-----
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeec-eeecCCCcC---------HHHHHHHHHHhhhccccc-----
Confidence            46677777764 5666543  3211000  12368888 999999999         799999999999999874     


Q ss_pred             ceeeeeEE
Q 027372          198 EFTPLGRI  205 (224)
Q Consensus       198 ~l~~lgri  205 (224)
                      ++.+++.+
T Consensus       123 ~l~~l~~~  130 (209)
T d1g0sa_         123 RTKPVLSF  130 (209)
T ss_dssp             CEEEEEEE
T ss_pred             ceeecccc
Confidence            46788866

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.8e-07  Score=81.56  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=39.6

Q ss_pred             eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372          135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV  194 (224)
Q Consensus       135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v  194 (224)
                      ++|+.||...     |.|.++ ||++++||+         +.+||+||+.||+|+.+..+
T Consensus       140 qvLlIkR~d~-----g~WaLP-GG~Vd~GEs---------~~~Aa~REl~EETGl~~~~~  184 (292)
T d1q33a_         140 QFVAIKRKDC-----GEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKT  184 (292)
T ss_dssp             EEEEEECTTT-----CSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGGGSC
T ss_pred             EEEEEEecCC-----CcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcccccc
Confidence            4888888653     789999 999999999         79999999999999987643

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.2e-06  Score=71.34  Aligned_cols=73  Identities=21%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             EEEEEEEEeC-CCeEEEE-E-ecCC-CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372          123 RAFSVFLFNS-KYELLLQ-Q-RSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE  198 (224)
Q Consensus       123 ra~sv~lfn~-~g~lLLq-q-Rs~~-K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~  198 (224)
                      -+|.|+++|. +++++|. | |..- .....+.|..-.+|++..+|+         +.+||+|||.||||+.+.     +
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d~e~---------p~~aA~REL~EEtG~~~~-----~  109 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDE---------PEVCIRKEAIEETGYEVG-----E  109 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTTSC---------HHHHHHHHHHHHHSCCCC-----C
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecCCCC---------HHHHHHHHHHHhhCCcce-----E
Confidence            3788888885 4676543 3 3210 000113333322344445777         589999999999999874     5


Q ss_pred             eeeeeEEEEEcc
Q 027372          199 FTPLGRILYKAP  210 (224)
Q Consensus       199 l~~lgri~Y~a~  210 (224)
                      +.+++++ |.+|
T Consensus       110 ~~~lg~~-~~sp  120 (189)
T d1viua_         110 VRKLFEL-YMSP  120 (189)
T ss_dssp             CEEEEEE-ESCT
T ss_pred             EEEccee-ecCc
Confidence            6788876 4443

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=9.9e-07  Score=67.01  Aligned_cols=48  Identities=17%  Similarity=0.094  Sum_probs=37.2

Q ss_pred             CCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 027372          132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC  190 (224)
Q Consensus       132 ~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~  190 (224)
                      .+|++||+||...+ .+.|+|.+| +|.++.+|+         ..++|.||..+|.+..
T Consensus        25 ~~~~iLl~kR~~~g-~l~GlWefP-~~~~~~~e~---------~~~~~~~~~~~e~~~~   72 (142)
T d1x51a1          25 LGAQILLVQRPNSG-LLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRWAGP   72 (142)
T ss_dssp             SSEEEEEEECCCCS-TTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEEECCCCC-CCCcceeee-EeeccCCcc---------hhHHHHHHHHHHhccC
Confidence            36799999998775 589999999 999999998         5666766655555443