Citrus Sinensis ID: 027382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEcEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHcEEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcHHHHHccccccccccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
msnlygdynqkIDYVFKVVLIGDSAVGKSQLLARFArnefsvdskatigvefqtktlsidhKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGnkcdlgslravptedAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKksltandehdvagnsnllkgtriivpgqdqnsaskrgcclss
Flexible Loop (DISEMBL)
MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFarnefsvdskatigvefqtktlsidhktvkaqiwdtagqerYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISkksltandehdvagnsnllkgtriivpgqdqnsaskrgcclss
Low Complexity Region (SEG)
MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS
Disordered region (IsUnstruct)
***LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA**********NLLKGTRIIV*****************
Disordered Region (DISOPRED)
*************YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY****************************************RGCCL**
Disordered Region (DISEMBL)
MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQ**************
Disordered Region (DISPRO)
********NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9LH50	222	Ras-related protein RABA4	yes	no	0.977	0.986	0.904	1e-115
P25766	226	Ras-related protein RGP1	yes	no	0.977	0.969	0.821	1e-107
Q9FE79	223	Ras-related protein RABA4	no	no	0.995	1.0	0.790	1e-104
Q40191	226	Ras-related protein Rab11	N/A	no	0.977	0.969	0.773	2e-96
Q40522	222	Ras-related protein Rab11	N/A	no	0.991	1.0	0.744	1e-95
Q40520	222	Ras-related protein Rab11	N/A	no	0.991	1.0	0.730	3e-93
Q9FJN8	226	Ras-related protein RABA4	no	no	0.977	0.969	0.723	4e-90
Q9SMQ6	224	Ras-related protein RABA4	no	no	0.941	0.941	0.697	9e-86
O04486	217	Ras-related protein RABA2	no	no	0.946	0.976	0.629	1e-75
Q40194	218	Ras-related protein Rab11	N/A	no	0.937	0.963	0.638	4e-75

>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/221 (90%), Positives = 211/221 (95%), Gaps = 2/221 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARFARNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WL+ELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           SKKSLTA+D+ D  GNS+LLKGTRII+P + Q S  + GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSE-QESGKRGGCC 219

Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth.
Arabidopsis thaliana (taxid: 3702)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/219 (82%), Positives = 203/219 (92%)

Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV 64
           YG+  QKIDYVFKVVLIGDSAVGKSQLLARFARNEF++DSKATIGVEFQT+TL ID +TV
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWL+ELRGHADKNIVIM
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           LIGNK DLG+LR VPTEDA+EFA+RENLFFMETSALE+TNVE AF+TVLTEIYRI+SKK+
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 185 LTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS 223
           L AN+E D +GNS+LLKGT+I+VPGQ+    +K  CC+S
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 204/224 (91%), Gaps = 1/224 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MS    ++NQKIDYVFKVVLIGDSAVGKSQLLARF+RNEFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWL+ELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFAQRENLFFMETSAL++ NVE +FLTVLTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
           SKK+L AN+E +  G+S+LL+GT+I+V G++  S  K GCC +S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGK-GCCGTS 223

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  351 bits (901), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/221 (77%), Positives = 192/221 (86%), Gaps = 2/221 (0%)

Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV 64
           YGD N KIDYVFKVVLIGDSAVGKSQ+LARFARNEFS+DSK+TIGVEFQT+TL IDHKTV
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWL+ELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           LIGNKCDL + R VPTEDA+EFA++E LFF+ETSALEATNVE+AF TVLTEIY I++KKS
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 185 LTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRG-CCLSS 224
           L A DE    GNS  L G +II+PG  Q   +KR  CC +S
Sbjct: 187 LAA-DESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226

Lotus japonicus (taxid: 34305)

>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1

 Score =  349 bits (895), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 192/223 (86%), Gaps = 1/223 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGKSQ+LARFARNEFS+DSKATIGVEFQT+TL+I 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQ 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWL+ELR HAD+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNK DL   RAVPTEDA+EFAQ+E LFF+ETSA+EATN+E AFLTVLTEI+ I+
Sbjct: 121 IVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS 223
           +KK+L A+D     GN   L G +I+VPG  Q    K+ CC S
Sbjct: 181 NKKNLAADDNQS-NGNPASLTGKKILVPGPGQVIPEKKACCSS 222

Nicotiana tabacum (taxid: 4097)

>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1

 Score =  341 bits (874), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 189/223 (84%), Gaps = 1/223 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARFARNEFS+DSKATIGVEFQT+TL I 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWL+ELR HAD+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIML GNK DL   RAVPTEDA+EFAQ+E LFF+ETSA+EAT +E AFLTVLTEI+ I+
Sbjct: 121 IVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS 223
           +KK+L A DE+    N   L G +I+VPG  Q    K+ CC S
Sbjct: 181 NKKNLAA-DENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222

Nicotiana tabacum (taxid: 4097)

>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2 SV=1

 Score =  330 bits (847), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 189/221 (85%), Gaps = 2/221 (0%)

Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV 64
           YGD +QKIDYVFKVVLIGDSAVGKSQ+LAR+AR+EFS+DSKATIGVEFQT+TL IDHK+V
Sbjct: 7   YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWL+ELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           LIGNK DL   RA+PTEDA+EFA++E LFF+ETSA  ATNVE+AF TVLTEI+ I++KKS
Sbjct: 127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query: 185 LTANDEHDVAGNSNLLKGTRI-IVPGQDQNSASKRGCCLSS 224
           L A+++ +  GN   L G +I IVPG  Q   +K   C +S
Sbjct: 187 LAASEDQE-NGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS 226

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2 SV=1

 Score =  316 bits (809), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 182/215 (84%), Gaps = 4/215 (1%)

Query: 11  KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD 70
           K+DYVFKVVLIGDSAVGKSQLLARFAR+EFS+DSKATIGVEFQT+TLSI+ K++KAQIWD
Sbjct: 13  KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query: 71  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC 130
           TAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWL+ELR HADKNIVI+LIGNK 
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDE 190
           DL   RAVPTEDA+EFA++E LFF+ETSAL ATNVE +F T++T+IY  ++KK+L +  +
Sbjct: 133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNLASEGD 192

Query: 191 HDVAGNSNLLKGTRIIVPGQDQNSASKRG-CCLSS 224
            +  G+   L G +I++PG  Q   +K   CC SS
Sbjct: 193 SNNPGS---LAGKKILIPGSGQEIPAKTSTCCTSS 224

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1

 Score =  282 bits (721), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 175/216 (81%), Gaps = 4/216 (1%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           +++ DY+FKVVLIGDS VGKS LL+RF RNEF ++SK+TIGVEF T+TL ++ +TVKAQI
Sbjct: 6   DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++++RWL ELR HAD NIVIMLIGN
Sbjct: 66  WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           K DL  LRAV TEDAQ +A++E L F+ETSALEA NVE AF T+L+E+YRIISKKS++++
Sbjct: 126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD 185

Query: 189 DEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
                  N+N+ +G  I V    +++A K+ CC SS
Sbjct: 186 ---QTTANANIKEGQTIDVAATSESNA-KKPCCSSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1

 Score =  280 bits (717), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/213 (63%), Positives = 170/213 (79%), Gaps = 3/213 (1%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           + + DY+FK+VLIGDS VGKS LL+RF +NEF+++SK+TIGVEF TKTL++D K VKAQI
Sbjct: 7   DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQI 66

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGAVGA+LVYD+T+R +F++ ARWL ELR H D NIV+MLIGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGN 126

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           K DL  L AVPTED + FA+RE+L+FMETSALEATNVE AF  VLT+IYRI+SK+++ A 
Sbjct: 127 KSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAG 186

Query: 189 DEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           D    +G  +  KG  I V  +D +   + GCC
Sbjct: 187 DSGSSSGLPS--KGQTINVK-EDSSVLKRFGCC 216

Lotus japonicus (taxid: 34305)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
255583280	223	protein with unknown function [Ricinus c	0.995	1.0	0.897	1e-114
449464898	223	PREDICTED: ras-related protein RABA4d-li	0.995	1.0	0.875	1e-113
15230422	222	RAB GTPase-like protein A4D [Arabidopsis	0.977	0.986	0.904	1e-113
388498830	223	unknown [Medicago truncatula]	0.986	0.991	0.878	1e-112
225441694	223	PREDICTED: ras-related protein RABA4d [V	0.995	1.0	0.878	1e-112
12322015	220	ras-related GTP-binding protein, putativ	0.968	0.986	0.895	1e-110
356537347	310	PREDICTED: ras-related protein RABA4d-li	0.986	0.712	0.852	1e-110
225450193	226	PREDICTED: ras-related protein RGP1 [Vit	1.0	0.991	0.853	1e-109
356500461	222	PREDICTED: ras-related protein RABA4d-li	0.986	0.995	0.833	1e-108
224120212	218	predicted protein [Populus trichocarpa]	0.973	1.0	0.851	1e-107

>gi|255583280|ref|XP_002532404.1| protein with unknown function [Ricinus communis] gi|223527900|gb|EEF29989.1| protein with unknown function [Ricinus communis]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/224 (89%), Positives = 210/224 (93%), Gaps = 1/224 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSN Y D+NQKIDYVFK+VLIGDSAVGKSQLLARFARNEF VDSKATIGVEFQTKTLSID
Sbjct: 1   MSN-YVDFNQKIDYVFKIVLIGDSAVGKSQLLARFARNEFCVDSKATIGVEFQTKTLSID 59

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 60  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 119

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLGSLRAVP EDAQEFAQRENLFFMETSALE+TNVETAFLTVLTEIYR+I
Sbjct: 120 IVIMLIGNKCDLGSLRAVPIEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRVI 179

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
           SKK+LTAN+E D  G S LLKGTRIIVPG DQ  A K GCC+SS
Sbjct: 180 SKKTLTANEELDTNGTSGLLKGTRIIVPGHDQAPAKKGGCCMSS 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464898|ref|XP_004150166.1| PREDICTED: ras-related protein RABA4d-like [Cucumis sativus] gi|449476501|ref|XP_004154754.1| PREDICTED: ras-related protein RABA4d-like [Cucumis sativus]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/224 (87%), Positives = 209/224 (93%), Gaps = 1/224 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
           SKKSL A +E D+  N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSG-RKGCCFAS 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230422|ref|NP_187823.1| RAB GTPase-like protein A4D [Arabidopsis thaliana] gi|297834018|ref|XP_002884891.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|75334990|sp|Q9LH50.1|RAA4D_ARATH RecName: Full=Ras-related protein RABA4d; Short=AtRABA4d gi|12322042|gb|AAG51065.1|AC069472_5 ras-related GTP-binding protein; 5118-4176 [Arabidopsis thaliana] gi|9294115|dbj|BAB01966.1| GTP-binding protein-like [Arabidopsis thaliana] gi|67633628|gb|AAY78738.1| Ras-related GTP-binding family protein [Arabidopsis thaliana] gi|297330731|gb|EFH61150.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332641639|gb|AEE75160.1| RAB GTPase-like protein A4D [Arabidopsis thaliana]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/221 (90%), Positives = 211/221 (95%), Gaps = 2/221 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARFARNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WL+ELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           SKKSLTA+D+ D  GNS+LLKGTRII+P + Q S  + GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSE-QESGKRGGCC 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498830|gb|AFK37481.1| unknown [Medicago truncatula]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/222 (87%), Positives = 210/222 (94%), Gaps = 1/222 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RN+F+VDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNQFNVDSKATIGVEFQTKTLVID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHAD N
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADTN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLG+L+AVPTEDAQEFAQRENLFFMETSALE+TNVETAFLT+LTEIYR+I
Sbjct: 121 IVIMLIGNKCDLGTLKAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTILTEIYRLI 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR-GCC 221
           SKK+LTANDE D  G S LLKGTRIIVP QD ++  K+ GCC
Sbjct: 181 SKKTLTANDEADPGGGSGLLKGTRIIVPNQDASAYEKKGGCC 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441694|ref|XP_002282798.1| PREDICTED: ras-related protein RABA4d [Vitis vinifera] gi|147789804|emb|CAN62934.1| hypothetical protein VITISV_008844 [Vitis vinifera] gi|297739720|emb|CBI29902.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 209/223 (93%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKSQLLARFARNEF+VDSKATIGVEFQTKTL+ID
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNVDSKATIGVEFQTKTLAID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            K VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 61  QKAVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNK DLGSLRAVPTEDAQEFA+RENLFFMETSALEATNVETAFLTVLT+IY+II
Sbjct: 121 IVIMLIGNKSDLGSLRAVPTEDAQEFAERENLFFMETSALEATNVETAFLTVLTDIYKII 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS 223
           SKK+LTAN + D  G+S LLKGT+IIVPG   ++A K GCC S
Sbjct: 181 SKKTLTANTDTDSTGSSTLLKGTKIIVPGGPDSAAQKGGCCGS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322015|gb|AAG51053.1|AC069473_15 ras-related GTP-binding protein, putative; 1694-2636 [Arabidopsis thaliana]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/221 (89%), Positives = 209/221 (94%), Gaps = 4/221 (1%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARFARNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQER  AVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WL+ELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQER--AVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 118

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT+LTEIYRII
Sbjct: 119 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 178

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           SKKSLTA+D+ D  GNS+LLKGTRII+P + Q S  + GCC
Sbjct: 179 SKKSLTADDD-DADGNSSLLKGTRIIIPSE-QESGKRGGCC 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537347|ref|XP_003537189.1| PREDICTED: ras-related protein RABA4d-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/224 (85%), Positives = 212/224 (94%), Gaps = 3/224 (1%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYG+YNQKIDYVFKVVLIGDSAVGK+QLLARFA+N+FSVDSKATIGVEFQTKTL ID
Sbjct: 87  MSNLYGEYNQKIDYVFKVVLIGDSAVGKTQLLARFAKNQFSVDSKATIGVEFQTKTLIID 146

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD+MA+WL+ELRGHADKN
Sbjct: 147 NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDNMAKWLEELRGHADKN 206

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IV+MLIGNKCDLG+LRAVPTEDA+EFAQRENLFFMETSALE+TNVETAFLT+LTEIYR+I
Sbjct: 207 IVVMLIGNKCDLGTLRAVPTEDAEEFAQRENLFFMETSALESTNVETAFLTILTEIYRLI 266

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR---GCC 221
           SKK+LTAND+ D +G S LLKGT+IIVP Q+ N+  K+   GCC
Sbjct: 267 SKKTLTANDDADPSGISGLLKGTKIIVPSQEINAGEKKGKGGCC 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450193|ref|XP_002264293.1| PREDICTED: ras-related protein RGP1 [Vitis vinifera] gi|297736218|emb|CBI24856.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/226 (85%), Positives = 211/226 (93%), Gaps = 2/226 (0%)

Query: 1   MSNLY-GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI 59
           MSN Y GDY+QKIDYVFKVVLIGDSAVGKSQLLARFARNEF++DSKATIGVEFQTKTL I
Sbjct: 1   MSNFYKGDYSQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTKTLVI 60

Query: 60  DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK 119
           DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWL ELRGHADK
Sbjct: 61  DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLQELRGHADK 120

Query: 120 NIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           NIVIML+GNK DLG+L+AVPTEDA+EFA+RENLFFMETSALEATNVETAFL+VLTEIYRI
Sbjct: 121 NIVIMLVGNKSDLGTLQAVPTEDAKEFAERENLFFMETSALEATNVETAFLSVLTEIYRI 180

Query: 180 ISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNS-ASKRGCCLSS 224
           ISKK+L AN+E +  GNS+LLKGT+IIVPG++  S  SK  CCLSS
Sbjct: 181 ISKKTLVANEEVESGGNSSLLKGTKIIVPGKEPKSEGSKYNCCLSS 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500461|ref|XP_003519050.1| PREDICTED: ras-related protein RABA4d-like [Glycine max]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 209/222 (94%), Gaps = 1/222 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSNLYG+YN KIDYVFKVVL+GDSAVGK+QLLARFA+N+F+VDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGEYNHKIDYVFKVVLVGDSAVGKTQLLARFAKNQFNVDSKATIGVEFQTKTLIID 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+R SFD+MA+WL+ELRGHADKN
Sbjct: 61  KKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDVTRRPSFDNMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IV+MLIGNKCDLG+LRAVPTEDA+EFAQRENLFFMETSALE+TNVETAFLT+LTEIYR++
Sbjct: 121 IVVMLIGNKCDLGTLRAVPTEDAEEFAQRENLFFMETSALESTNVETAFLTILTEIYRLV 180

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR-GCC 221
           SKK+LTAND+ D +G S LLKGT+IIVP QD N+  K+ GCC
Sbjct: 181 SKKTLTANDDADPSGISGLLKGTKIIVPSQDINAGEKKGGCC 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120212|ref|XP_002330992.1| predicted protein [Populus trichocarpa] gi|222872922|gb|EEF10053.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/222 (85%), Positives = 205/222 (92%), Gaps = 4/222 (1%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MSN Y DYNQKIDYVFK+VLIGDSAVGKSQ LARFARNEF+ DSKATIGVEFQTKTL++D
Sbjct: 1   MSN-YVDYNQKIDYVFKIVLIGDSAVGKSQFLARFARNEFNADSKATIGVEFQTKTLAMD 59

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
           +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH+ARWL+ELRGHADK+
Sbjct: 60  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHLARWLEELRGHADKS 119

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           I+IMLIGNKCDLGSLRAVPTEDA+EFAQRENLFFMETSALEATNVETAF TVLTEIYRII
Sbjct: 120 IIIMLIGNKCDLGSLRAVPTEDAEEFAQRENLFFMETSALEATNVETAFWTVLTEIYRII 179

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222
           SKK+L  ND+ D  GN  + KGTRI+VP Q QNS  K+GCC+
Sbjct: 180 SKKTLAGNDKSD--GNPGVFKGTRILVPSQAQNS-EKKGCCM 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2082269	222	RABA4D "RAB GTPase homolog A4D	0.977	0.986	0.904	2.6e-102
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.995	1.0	0.790	5e-92
TAIR|locus:2171790	226	RABA4a "RAB GTPase homolog A4A	0.977	0.969	0.723	1.1e-80
TAIR|locus:2140079	224	RABA4B "RAB GTPase homolog A4B	0.968	0.968	0.696	1e-77
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.946	0.976	0.629	2.1e-68
TAIR|locus:2168469	217	RABA2D "RAB GTPase homolog A2D	0.928	0.958	0.657	2.1e-68
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	0.915	0.940	0.652	1.5e-67
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.941	0.972	0.634	1.9e-67
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.910	0.944	0.636	4e-67
TAIR|locus:2057624	218	ArRABA1h "RAB GTPase homolog A	0.915	0.940	0.638	8.2e-67

TAIR|locus:2082269 RABA4D "RAB GTPase homolog A4D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 200/221 (90%), Positives = 211/221 (95%)

Query:     1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
             MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARFARNEFSVDSKATIGVEFQTKTL ID
Sbjct:     1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query:    61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
             +KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WL+ELRGHADKN
Sbjct:    61 NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query:   121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
             IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT+LTEIYRII
Sbjct:   121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query:   181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
             SKKSLTA+D+ D  GNS+LLKGTRII+P + Q S  + GCC
Sbjct:   181 SKKSLTADDD-DADGNSSLLKGTRIIIPSE-QESGKRGGCC 219

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0070382 "exocytic vesicle" evidence=IDA

GO:0048868 "pollen tube development" evidence=IGI;RCA

GO:0019900 "kinase binding" evidence=IPI

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 177/224 (79%), Positives = 204/224 (91%)

Query:     1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
             MS    ++NQKIDYVFKVVLIGDSAVGKSQLLARF+RNEFS++SKATIGVEFQT+TL ID
Sbjct:     1 MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query:    61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
              KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWL+ELRGHADKN
Sbjct:    61 RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query:   121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
             IVIMLIGNK DLG+LRAVPTEDA+EFAQRENLFFMETSAL++ NVE +FLTVLTEIYRI+
Sbjct:   121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query:   181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
             SKK+L AN+E +  G+S+LL+GT+I+V G++  S  K GCC +S
Sbjct:   181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGK-GCCGTS 223

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2171790 RABA4a "RAB GTPase homolog A4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 160/221 (72%), Positives = 189/221 (85%)

Query:     5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV 64
             YGD +QKIDYVFKVVLIGDSAVGKSQ+LAR+AR+EFS+DSKATIGVEFQT+TL IDHK+V
Sbjct:     7 YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query:    65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
             KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWL+ELR HADKNIVI+
Sbjct:    67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query:   125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
             LIGNK DL   RA+PTEDA+EFA++E LFF+ETSA  ATNVE+AF TVLTEI+ I++KKS
Sbjct:   127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query:   185 LTANDEHDVAGNSNLLKGTRI-IVPGQDQNSASKRGCCLSS 224
             L A+++ +  GN   L G +I IVPG  Q   +K   C +S
Sbjct:   187 LAASEDQE-NGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS 226

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2140079 RABA4B "RAB GTPase homolog A4B" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 154/221 (69%), Positives = 185/221 (83%)

Query:     5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV 64
             YG  + K+DYVFKVVLIGDSAVGKSQLLARFAR+EFS+DSKATIGVEFQT+TLSI+ K++
Sbjct:     7 YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query:    65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
             KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWL+ELR HADKNIVI+
Sbjct:    67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVII 126

Query:   125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
             LIGNK DL   RAVPTEDA+EFA++E LFF+ETSAL ATNVE +F T++T+IY  ++KK+
Sbjct:   127 LIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKN 186

Query:   185 LTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRG-CCLSS 224
             L +  E D + N   L G +I++PG  Q   +K   CC SS
Sbjct:   187 LAS--EGD-SNNPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 136/216 (62%), Positives = 175/216 (81%)

Query:     9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
             +++ DY+FKVVLIGDS VGKS LL+RF RNEF ++SK+TIGVEF T+TL ++ +TVKAQI
Sbjct:     6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65

Query:    69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
             WDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++++RWL ELR HAD NIVIMLIGN
Sbjct:    66 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125

Query:   129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
             K DL  LRAV TEDAQ +A++E L F+ETSALEA NVE AF T+L+E+YRIISKKS++++
Sbjct:   126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD 185

Query:   189 DEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
                    N+N+ +G  I V    +++A K+ CC SS
Sbjct:   186 Q---TTANANIKEGQTIDVAATSESNA-KKPCCSSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

TAIR|locus:2168469 RABA2D "RAB GTPase homolog A2D" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 140/213 (65%), Positives = 167/213 (78%)

Query:    10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW 69
             Q  DY+FK+VLIGDS VGK+ +L+RF RNEF ++SK+TIGVEF T+TL ++ KTVKAQIW
Sbjct:     7 QDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query:    70 DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK 129
             DTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQ+FD++ RWL ELR HAD NIVIM+ GNK
Sbjct:    67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 126

Query:   130 CDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAND 189
              DL  LR+V  ED Q  A+ E L F+ETSALEATNVE AF TVL EIY IISKK+L A +
Sbjct:   127 ADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIISKKALAAQE 186

Query:   190 EHDVAGNSNLL-KGTRIIVPGQDQNSASKRGCC 221
                 A NS +  +GT I V  +D + A KRGCC
Sbjct:   187 A--AAANSAIPGQGTTINV--EDTSGAGKRGCC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 137/210 (65%), Positives = 165/210 (78%)

Query:    13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             DY+FKVVL GDS VGKS LL+RF RN+FS DS+ATIGVEF T+++  D K VKAQIWDTA
Sbjct:    11 DYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQIWDTA 70

Query:    73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
             GQERYRA+TSAYYRGAVGA+LVYD+T+  +F+++ RWL ELR H D NIVIML+GNK DL
Sbjct:    71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADL 130

Query:   133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
               LRA+ TE+A+ FA+REN FFMETSALEA NV+ AF  VLT+IYR++SKK+L A D+  
Sbjct:   131 RHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGDDPT 190

Query:   193 VAGNSNLLKGTRIIVPGQDQNSASKR-GCC 221
              A    L KG  I V G+D  SA K+ GCC
Sbjct:   191 TA----LPKGQMINVGGRDDISAVKKPGCC 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 137/216 (63%), Positives = 168/216 (77%)

Query:     9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
             +Q+ DY+FK+VLIGDS VGKS +L+RF RNEF ++SK+TIGVEF T+T  ++ KT+KAQI
Sbjct:     6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQI 65

Query:    69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
             WDTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQ+FD++ RWL ELR HAD NIVIM+ GN
Sbjct:    66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 125

Query:   129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
             K DL  LR+V  ED Q  A++E L F+ETSALEATNVE AF T+L EIY IISKK+L A 
Sbjct:   126 KSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQ 185

Query:   189 DEHDVAGNSNLL-KGTRIIVPGQDQNSASKRGCCLS 223
             +    A NS +  +GT I V   D +  +KR CC S
Sbjct:   186 EA--AAANSAIPGQGTTINV--DDTSGGAKRACCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 133/209 (63%), Positives = 168/209 (80%)

Query:    13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             DY+FKVVLIGDS VGKS LL+RF +NEF+++SK+TIGVEF T+TL +D K VKAQIWDTA
Sbjct:    11 DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTA 70

Query:    73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
             GQERYRA+TSAYYRGAVGA+LVYD+T+R +F+++ RWL EL+ H D NIV+ML+GNK DL
Sbjct:    71 GQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDL 130

Query:   133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
               L AVPTED + +A++E+L FMETSALEATNVE AF  VLT+IYRI SKK + A ++  
Sbjct:   131 RHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGED-- 188

Query:   193 VAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
               GN+++ KG +I V   D ++  K GCC
Sbjct:   189 --GNASVPKGEKIEVKN-DVSALKKLGCC 214

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2057624 ArRABA1h "RAB GTPase homolog A1H" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 134/210 (63%), Positives = 164/210 (78%)

Query:    13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             DY+FKVVL GDS VGKS LL+RF RN+FS DS++TIGVEF T+++ +D K VKAQIWDTA
Sbjct:    11 DYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDKIVKAQIWDTA 70

Query:    73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
             GQERYRA+TSAYYRGAVGA+LVYD+T+  +F+++ RWL ELR H D N VIML+GNK DL
Sbjct:    71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTVIMLVGNKADL 130

Query:   133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
               LRA+ TE+ ++FA+REN FFMETSALEA NVE AF  VLT+IYR++SKK+L A D+  
Sbjct:   131 NHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSKKALDAGDDPT 190

Query:   193 VAGNSNLLKGTRIIVPGQDQNSASKR-GCC 221
              A    L KG  I V  +D  SA K+ GCC
Sbjct:   191 TA----LPKGQMINVGSRDDVSAVKKSGCC 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40522	RB11D_TOBAC	No assigned EC number	0.7443	0.9910	1.0	N/A	no
Q40520	RB11C_TOBAC	No assigned EC number	0.7309	0.9910	1.0	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.6208	0.9196	0.9493	N/A	no
P25766	RLGP1_ORYSJ	No assigned EC number	0.8219	0.9776	0.9690	yes	no
Q9FE79	RAA4C_ARATH	No assigned EC number	0.7901	0.9955	1.0	no	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.5972	0.9464	0.9814	yes	no
Q40195	RB11E_LOTJA	No assigned EC number	0.63	0.8437	0.8669	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.6384	0.9375	0.9633	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.7737	0.9776	0.9690	N/A	no
P17610	YPT3_SCHPO	No assigned EC number	0.6737	0.8258	0.8644	yes	no
Q9FJN8	RAA4A_ARATH	No assigned EC number	0.7239	0.9776	0.9690	no	no
Q40193	RB11C_LOTJA	No assigned EC number	0.6291	0.9330	0.9675	N/A	no
P62494	RB11A_RAT	No assigned EC number	0.5972	0.9464	0.9814	yes	no
Q40523	RB11A_TOBAC	No assigned EC number	0.6103	0.9330	0.9675	N/A	no
P36412	RB11A_DICDI	No assigned EC number	0.5424	0.9241	0.9672	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.5972	0.9464	0.9814	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.6157	0.9419	0.9678	N/A	no
Q9LH50	RAA4D_ARATH	No assigned EC number	0.9049	0.9776	0.9864	yes	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.5972	0.9464	0.9814	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5879	0.9553	0.9816	N/A	no
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.5879	0.9553	0.9816	yes	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.6267	0.9196	0.9537	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.5972	0.9464	0.9814	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6355	0.9196	0.9626	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.5972	0.9464	0.9814	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.5972	0.9464	0.9814	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.5972	0.9464	0.9814	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-121
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-104
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-101
pfam00071	162	pfam00071, Ras, Ras family	1e-89
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-85
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-75
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	5e-74
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-71
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-69
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-68
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-65
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-64
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-63
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-63
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-60
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-58
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-55
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-54
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-52
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-51
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	4e-51
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-51
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-49
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-47
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-45
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-45
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-45
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-42
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-41
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-40
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-38
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-38
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-37
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-37
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-36
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-35
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-34
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-34
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-34
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-31
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-31
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-31
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-30
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-29
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	7e-29
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-29
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-28
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-27
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-27
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-27
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-25
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-24
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-24
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	6e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	9e-24
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-23
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-23
pfam08477	116	pfam08477, Miro, Miro-like protein	8e-22
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-20
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	8e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-18
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	9e-17
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-16
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-15
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-15
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-14
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-12
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-10
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	5e-10
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	5e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	7e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-07
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-07
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	9e-07
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-06
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-05
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  341 bits (876), Expect = e-121
 Identities = 118/165 (71%), Positives = 143/165 (86%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK+VLIGDS VGKS LL+RF RNEF++DSK+TIGVEF T+T+ ID KT+KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYRA+TSAYYRGAVGA+LVYD+TK+ +F+++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
             LRAVPTE+A+ FA++  L F+ETSAL+ TNVE AF  +LTEIY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  300 bits (770), Expect = e-104
 Identities = 139/214 (64%), Positives = 168/214 (78%), Gaps = 6/214 (2%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           + + DY+FK+VLIGDS VGKS +L+RF RNEF ++SK+TIGVEF T+TL ++ KTVKAQI
Sbjct: 6   DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQ+FD++ RWL ELR HAD NIVIM+ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           K DL  LR+V  ED Q  A++E L F+ETSALEATNVE AF T+L EIY IISKK+L A 
Sbjct: 126 KSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAA- 184

Query: 189 DEHDVAGNSNL-LKGTRIIVPGQDQNSASKRGCC 221
              + A NS L  +GT I V   D +  +KRGCC
Sbjct: 185 --QEAAANSGLPGQGTTINV--ADTSGNNKRGCC 214

Length = 216

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  289 bits (742), Expect = e-101
 Identities = 95/164 (57%), Positives = 122/164 (74%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK++LIGDS VGKS LL+RF   +FS   K+TIGV+F+TKT+ +D K VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++TS+YYRGAVGA+LVYD+T R+SF+++  WL ELR +A  N+VIML+GNK DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           R V  E+A+ FA+   L F ETSA   TNVE AF  +  EI + 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  260 bits (668), Expect = 1e-89
 Identities = 88/162 (54%), Positives = 115/162 (70%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+GD  VGKS LL RF +N+F  +   TIGV+F TKT+ +D KTVK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           +RA+   YYRGA G +LVYD+T R SF+++ +WL+E+  HAD+N+ I+L+GNKCDL   R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            V TE+ +  A+   L FMETSA    NVE AF  +  EI +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  250 bits (640), Expect = 2e-85
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VLIGDS VGK+ LL RF  N+FS + K+TIGV+F++KT+ +D K VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++TS+YYRGA GA+LVYD+T R+SF+++ +WL+EL+ +A  NI I+L+GNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           R V TE+AQ+FA+   L F ETSA    NV+ AF ++
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  222 bits (569), Expect = 9e-75
 Identities = 83/162 (51%), Positives = 111/162 (68%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GDS+VGKS ++ RF +NEFS + ++TIG  F T+T+++D  TVK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RYR++   YYRGA  A++VYD+T  +SF+    W+ EL+ H   NIVI L GNK DL S 
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           R V TE+AQE+A    L FMETSA    NV   F  +  ++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  221 bits (565), Expect = 5e-74
 Identities = 87/165 (52%), Positives = 117/165 (70%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H++ N+ IMLIGNKCDL 
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           S R V  E+ + FA+   L FMETSA  A+NVE AF+    EIY 
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  215 bits (549), Expect = 1e-71
 Identities = 85/163 (52%), Positives = 122/163 (74%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KTVK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             + V   +A+EFA    + F+ETSA  ATNVE AF+T+  EI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  209 bits (533), Expect = 3e-69
 Identities = 78/164 (47%), Positives = 117/164 (71%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGKS LL RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T++YYRGA+G +LVYD+T  +SF+++  W+  +  HA +++  ML+GNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              R V  E+ +  A+   + F+ETSA    NVE AFLT+  +I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  209 bits (532), Expect = 2e-68
 Identities = 100/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID+K +K QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQE +R++T +YYRGA GA+LVYD+T+R++F+H+A WL++ R HA+ N+ IMLIGNKCDL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
              RAV TE+ ++FA+   L FME SA  A NVE AF+    +IY+ I           D
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVF------D 177

Query: 193 VAGNSNLLKGTRIIVPGQ----DQNSASKRGCC 221
           V+  S  +K     +PG     D  S+   GCC
Sbjct: 178 VSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  198 bits (505), Expect = 4e-65
 Identities = 82/165 (49%), Positives = 113/165 (68%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF T+ + ++ + +K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R   + N VI LIGNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           + R V  E+A++FA    L F+E SA    NVE AFL    +IY+
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  196 bits (501), Expect = 2e-64
 Identities = 80/162 (49%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K++LIGDS VGKS LL RF  + F  D  +TIGV+F+ KT+++D K VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           R+R +TS+YYRGA G +LVYD+T+R +FD++  WL+EL  ++   + V ML+GNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V  E+ Q+FA++ N+ F+ETSA     V+ AF  ++ +I
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  194 bits (494), Expect = 2e-63
 Identities = 81/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK++LIGDS VGK+ ++ RF    FS     TIGV+F  KTL I  K VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T +YYR A GA++ YD+T+R SF+ +  W++E+  +   N+V++LIGNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 133 GSLRAVPTEDAQEFAQRENLFF-METSALEATNVETAFLTVLTEI 176
              R V  E+A   A+   +   +ETSA E++NVE AFL + TE+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  192 bits (490), Expect = 7e-63
 Identities = 83/155 (53%), Positives = 108/155 (69%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK ++IG +  GKS LL +F  N+F  DS  TIGVEF ++ +++  K+VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R+VT +YYRGA GA+LVYD+T R+SF+ +  WL + R  A  +IVI+L+GNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           R V   +A  FAQ   L F+ETSAL   NVE AFL
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  185 bits (472), Expect = 4e-60
 Identities = 67/154 (43%), Positives = 106/154 (68%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V +GD +VGK+ ++ RF  + F    +ATIG++F +KT+ +D KTV+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T RQSFD+  +W+D++R     +++I+L+GNK DL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           R V TE+ ++ A+  N  F+ETSA    NV+  F
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  181 bits (462), Expect = 6e-58
 Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 13/216 (6%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTA 72
           Y F++++IGDS VGKS LL RF    F+  S  T+GV+F ++ + I     +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCD 131
           GQER+R++T +YYR +VG +LV+D+T R+SF+H+  WL+E R H      V +L+G+KCD
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEH 191
           L S R V  E+A++ A+   + ++ETSA    NVE AF  +  EIY  I +  L A D  
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 192 D------VAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           D       AG +  L+            S  K  CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSP-----TFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  174 bits (442), Expect = 2e-55
 Identities = 71/164 (43%), Positives = 110/164 (67%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I  + +K QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A+  ++ +L+GNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              R V  + A+EF+  ++++++ETSA E+ NVE  FL +   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  171 bits (434), Expect = 6e-54
 Identities = 88/209 (42%), Positives = 124/209 (59%), Gaps = 13/209 (6%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GNK D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDD 122

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
              + V TEDA +FA +  +   ETSA E  NVE  F  +   + R  +KK   A  +  
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR--AKKDNLAKQQQQ 180

Query: 193 VAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
              +   L           +NS  K+ CC
Sbjct: 181 QQNDVVKL----------PKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  165 bits (421), Expect = 3e-52
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK +++D + V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCD 131
           R++++  A+YRGA   +LVYD+T  +SF+ +  W DE    A     +N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 132 LGSLRAVPTEDAQEFAQ-RENLFFMETSALEATNVETAFLTVLT 174
           L   R V T+ AQ++ + + N+ + ETSA EA NV+ AF T+  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  164 bits (416), Expect = 3e-51
 Identities = 81/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           FKV+L+GDS VGK+ LL RF    F   S  AT+G++F  K +++D   VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           ER+R+VT AYYR A   +L+YD+T + SFD++  WL E+  +A  ++VIML+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI-YRIISKKSLTANDEHD 192
            R V  ED +  A+   + FMETSA    NVE AF  V  E+ +R + +         D
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQD 179

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (413), Expect = 4e-51
 Identities = 65/161 (40%), Positives = 96/161 (59%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FKVVL+G+  VGK+ L+ R+  N+F+   ++T    F  KT++I  K +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY A+   YYR A GA+LVYD+T   SF  + +W+ EL+     NI ++++GNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V   +A+E+A+       ETSA     +E  FL++   +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  162 bits (413), Expect = 4e-51
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 5/164 (3%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK+++IGDS VGK+ L  RF    F   ++ATIGV+F+ +T+ ID + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 75  ERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCDL 132
           ER+R ++   YYR     + VYD+T   SF  +  W++E   H+  N V  +L+GNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSA---LEATNVETAFLTVL 173
                VPT+ AQ FA   ++   ETSA    E  +VE  F+T+ 
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  158 bits (402), Expect = 6e-49
 Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 21/214 (9%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT-VKAQIWDTAGQ 74
           FKV++IGD  VGK+ ++ R+    FS   KATIGV+F  K +  D  T V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL----RGHADKNIVIMLIGNKC 130
           ER+  +T  YY+GAVGA++V+D+T+  +F+ + +W  +L         + I  +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 131 DLGSLR-AVPTEDAQEFAQRENLF--FMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
           DL   R A   E   +F  +EN F  + ETSA E  N+E A   ++  I  + + K L  
Sbjct: 121 DLKKERLAKDPEQMDQFC-KENGFIGWFETSAKENINIEEAMRFLVKNI--LKNDKGL-- 175

Query: 188 NDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
                   N   LK            ++  + CC
Sbjct: 176 QSPEPDEDNVIDLKQE--------TTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  152 bits (385), Expect = 7e-47
 Identities = 65/155 (41%), Positives = 105/155 (67%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           ERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
            R V  E  ++ A +    F E SA E  NV+  F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  148 bits (376), Expect = 1e-45
 Identities = 71/161 (44%), Positives = 103/161 (63%), Gaps = 1/161 (0%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           F+++LIGDS VGK+ LL RF  NEF     +TIGV+F+ KT+ +D   V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY+ +T  YYR A G  LVYD++  +S+ H+ +W+ ++  +A + +  +LIGNK D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E   + A+   + F ETSA    N++ +F T LTE+
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF-TRLTEL 160

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  148 bits (376), Expect = 1e-45
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++G   VGKS L  RF   EF  +   TI  +   K + +D +T    I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           + A+   Y R   G +LVY +T R+SF+ +    ++ LR    +++ I+L+GNKCDL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V TE+ +  A+     F+ETSA    N++  F T++ EI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  149 bits (376), Expect = 5e-45
 Identities = 81/211 (38%), Positives = 116/211 (54%), Gaps = 14/211 (6%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D  FK++LIGDS VGKS LL  F  +    D   TIGV+F+ K L++  K +K  IWDTA
Sbjct: 12  DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHA-DKNIVIMLIGNKC 130
           GQER+R +TS+YYR A G +LVYD+T+R++F +++  W  E+  ++ +++ V ML+GNK 
Sbjct: 71  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDE 190
           D  S R V  E+    A+     F+E SA    NVE  F  +  +I  + S       +E
Sbjct: 131 DRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS-----LLEE 185

Query: 191 HDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
              A   N+LK         +       GCC
Sbjct: 186 GSTAVKRNILK------QKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  141 bits (357), Expect = 5e-42
 Identities = 70/195 (35%), Positives = 95/195 (48%), Gaps = 18/195 (9%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
             FK+V++GD  VGK+ LL R   +EF      TIG     KT+    + +K Q+WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDL 132
           QE YR++   YYRGA G ++VYD T R+S D +   WL+ELR  A  ++ I+L+GNK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 133 ------------GSLRAVPTEDAQEFAQRENLF---FMETSA--LEATNVETAFLTVLTE 175
                          R V        A    +     +ETSA  L   NV   F  +L +
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 176 IYRIISKKSLTANDE 190
           +   I K  L     
Sbjct: 184 LLEEIEKLVLKNELR 198

Length = 219

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  139 bits (351), Expect = 2e-41
 Identities = 64/163 (39%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +V++IG   VGK+ L+ RF  + F    K+T+GV+F+ KT+ +  K ++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           + ++TSAYYR A G +LVYD+TK+++FD + +W+  +  +A ++  ++L+GNK D  + R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 137 AVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
            +  +  ++FAQ+   + F E SA +  NV+  FL ++ +I +
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  136 bits (345), Expect = 1e-40
 Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 11/172 (6%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT--------- 63
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  + +          
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 64  -VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNI 121
            V  Q+WDTAGQER+R++T+A++R A+G +L++D+T  QSF ++  W+ +L+ HA  +N 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173
            I+LIGNK DL   R V    A+E A +  + + ETSA    NVE A  T+L
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  130 bits (330), Expect = 1e-38
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            K+V++GD  VGKS LL R   N+ S+   K      + T  +  D KT K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           E Y A+   YYR    ++ V+D+        + + +   E+  HA+  + I+L+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
              + + T  A  FA+      +  SA    N+++AF  V  
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  131 bits (330), Expect = 3e-38
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 5/168 (2%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+ K +L+GDS VGK ++LA              +G++++T T+ +D + VK Q+WDT+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQ R+  +  +Y RGA G +LVYD+T R SFD + RW+ E+  HA   +  +L+GN+  L
Sbjct: 64  GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHL 122

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
              R V TE AQ +A+R  + F E S L   N+  +F    TE+ RI+
Sbjct: 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF----TELARIV 166

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  128 bits (322), Expect = 2e-37
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 6/167 (3%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
           ER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD    ++   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 131 DLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVETAFLTVLTEI 176
           D+   R V TE+AQ +     +  + ETSA +ATNV  AF   +  +
Sbjct: 125 DI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  126 bits (320), Expect = 5e-37
 Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F  D   TI  +   K + ID +     I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            + A+   Y R   G +LVY +T RQSF+ + ++ ++ LR     ++ I+L+GNKCDL S
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V TE+ +E A++    F+ETSA E  NV+ AF  ++ EI +
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  126 bits (320), Expect = 6e-37
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F  +   TI  +   K + ID +     I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            + A+   Y R   G +LVY +T RQSF+ +A++ ++ LR     ++ I+L+GNKCDL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V TE+ +E A++    F+ETSA E  NV+ AF  ++ EI +
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  124 bits (314), Expect = 3e-36
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 3/155 (1%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--TVKAQIWDTAGQ 74
           KV+++G+  VGKS ++ RF +  F+ D K TIGV+F  K + +      V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           E + A+T AYYRGA   +LV+  T R+SF+ +  W +++      +I ++L+  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
              +  E+A+  A+R  L    TS  +  NV   F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  121 bits (306), Expect = 6e-35
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+ +G+S VGKS ++ R+    F      TIG+++  K +S+ +K V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR----GHAD-KNIVIMLIGNKCD 131
           Y  V + +Y+   G +LVYD+T RQSF+ +  WL E++     H + +NIV+++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           L   RAV  ++ + +A+ +   + ETSA     V   F T+ + I  
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  121 bits (303), Expect = 2e-34
 Identities = 58/151 (38%), Positives = 95/151 (62%)

Query: 38  NEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM 97
           + F  + ++TIG++F +KTL +D   V+ Q+WDTAGQER+R++  +Y R +  A++VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 98  TKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMET 157
           T RQSF++  +W+ ++     K+++I L+GNK DLG LR V  E+  + AQ  N  F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 158 SALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           SA    N++  F  +  ++  + +  S  AN
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPNLDNSNSNDAN 153

Length = 176

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  121 bits (305), Expect = 2e-34
 Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 23/210 (10%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           KVV++G  +VGK+ L+ R+  + F V   + TIG  F  K + +  + V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL--- 132
           RY A++  YYRGA  A++ YD+T   SF+    W+ EL+ + +++  I L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIEQ 120

Query: 133 -GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEH 191
             SLR V   D Q+FA        ETS+    NV+  F  V  E +   +   +      
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV-AEDFVSRANNQMNTEKGV 179

Query: 192 DVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           D+               GQ +NS     CC
Sbjct: 180 DL---------------GQKKNSY-FYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  120 bits (302), Expect = 2e-34
 Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQLNILDTAGQE 59

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            Y A+   Y+R   G +LV+ +T  +SF  +A + ++ LR   D N+ ++L+GNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E+A   A++  + ++ETSA    NV+  F  ++ EI +
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  113 bits (284), Expect = 1e-31
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +K+V++G   VGKS L  +F ++ F  D   TI   + TK   ID +  +  I DTAGQ
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLG 133
           E + A+   Y R   G +LV+ +T R SF+ + ++  + LR        ++L+GNK DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
             R V  E+ QE A++  + ++ETSA +  NV+ AF     ++ R+I 
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFH----DLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (285), Expect = 1e-31
 Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 7/174 (4%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +N F  +   TI   ++ K   ID +T    I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGS 134
            Y A+   Y R   G + VY +T R SF+ +A + +++    DK+ V ++L+GNKCDL S
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
            R V T + QE A+   + F+ETSA +  NV+ AF  ++ EI     +K L  +
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI-----RKYLKED 173

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  111 bits (280), Expect = 4e-31
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++GD +VGK+ L+ RF ++ F  + KATIGV+F+ +   +       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDL--G 133
           ++ + S YYRGA   ++V+D+T   S +H  +WL D L+ +   ++++ L+G K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           +  A+  +DA + A+     +   SAL   NV   F  V
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  110 bits (277), Expect = 2e-30
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G  +VGKS L  +F    F      TI   F +K ++   +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE--LRGHADKNIVIMLIGNKCDLGS 134
           Y  +   Y  G  G +LVY +T R+SF+ + + + +  L     +++ I+L+GNK DL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
            R V  E+ ++ A+     F+E+SA E  NVE AF  ++ EI ++
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKV 165

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  107 bits (269), Expect = 2e-29
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
            Y A+   Y R   G + V+ +  R+SF+ +  + ++++   D + V M L+GNKCDL +
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V T   Q+ A+   + ++ETSA     VE AF T++ EI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  106 bits (265), Expect = 7e-29
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 17  KVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSIDH--KTVKAQIWDTA 72
           +  ++GD AVGKS L+  F  +   F  +   T G +   KT+ +     +V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCD 131
           GQE +  +    +       +VYD+T   SF++ +RW++ +R H+   +   +L+GNKCD
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           L   R V    AQ  AQ   L F ETSA E    E  FL++
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  105 bits (264), Expect = 7e-29
 Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 4/159 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K++L+GDSAVGKS+L+ RF  + +     +T  +         + KT+    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           ++ + ++YY  A   +LV+D+T++ ++ ++++W +ELR +  + I  +++ NK DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKIDL-DPS 119

Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
              T+    FA++ NL     SA + TNV   F   +  
Sbjct: 120 V--TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  104 bits (261), Expect = 3e-28
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +N F      TI   ++ K + ID +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G +LVY +T   S + +    ++ LR     N+ ++L+GNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 135 LRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFLTVLTEIYRII 180
            R V  ED    +Q+     F ETSA + TNV+  F+ ++ +I  +I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIICVI 167

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  104 bits (261), Expect = 3e-28
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   ++  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY     A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 118

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           R V  +    F +++NL + E SA    N E  FL
Sbjct: 119 RKVKPKQIT-FHRKKNLQYYEISAKSNYNFEKPFL 152

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  104 bits (260), Expect = 1e-27
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 5/212 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQ 74
            K+V++GD A GK+ L+ RFA+  F    K TIG++F ++ +++     V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL---DELRGHADKNIVIMLIGNKCD 131
           +    +   Y  GA    LVYD+T  QSF+++  WL    ++   ++    ++L+GNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI-ISKKSLTANDE 190
           L   R V  E    FAQ  ++  +  SA     V   F  +  E+  + +S+  L  +  
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQR 180

Query: 191 HDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222
              A  S   + T      +  N  S   C +
Sbjct: 181 VVKADVSRYSERTLREPVSRSVNKRSNSMCAV 212

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  103 bits (257), Expect = 2e-27
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD  VGK+ L  +   N F      TI   ++ K + +D +    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR---GHADKNIVIMLIGNKCDLG 133
           Y A+   + R   G +LVY +T R +F+ + R+ ++++     +  ++ IM++GNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             R V TE+    A+R    F+E SA    NVE AF T++  +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  101 bits (255), Expect = 3e-27
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD AVGK+ LL  +  N+F  +   T+  +  +  +++D K V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  +    Y      +L + +    SF+++   W  E++ +   N+ I+L+G K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 133 --------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                      + +  E+ ++ A+      +ME SAL    ++  F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI   ++ K + +D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G +LVY +T + +F+ +    ++ LR    +++ ++L+GNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A++    F+ETSA    NV   F  ++ +I R
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 96.1 bits (239), Expect = 6e-25
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 4/173 (2%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +K+V++G   VGKS +  +F  + F      TI   ++T+   ID++     I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQ 60

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL--RGHADKNIVIMLIGNKCDL 132
             + A+   Y R   G ++ Y +T R SF   A    EL  R    ++I ++L+GNK DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSF-QEASEFKELITRVRLTEDIPLVLVGNKVDL 119

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
              R V TE+ +  A+  N  F ETSA     ++ AF  ++ EI R  S  +L
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +KVV++G   VGKS L  +F    F      TI  +F  K + +D      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ ++   Y +   G ++VY +  +Q+F  +    D+ +R    + + I+L+GNK DL S
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V + + +  A+     FMETSA   T V   F  ++ ++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 94.6 bits (236), Expect = 2e-24
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           +V++GD AVGK+ LL  +  N F  D   T+   + +  + +D K V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 78  RAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL---- 132
             +    Y      ++ + +    SF+++  +W  E++     N+ I+L+G K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDK 118

Query: 133 --------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                        V  E  Q  A+R     ++E SAL    V   F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 95.1 bits (237), Expect = 4e-24
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK++L+GD  VGK+  + R    EF      T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-----KNIVIMLIGNKC 130
           ++  +   YY     A++++D+T R ++ ++  W      H D     +NI I+L+GNK 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW------HRDIVRVCENIPIVLVGNKV 123

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           D+   R V       F +++NL + + SA    N E  FL
Sbjct: 124 DVKD-RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFL 161

Length = 215

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 93.8 bits (233), Expect = 4e-24
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI  +   K + +D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T +QSF+ +    ++ LR    +++ ++L+GNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 135 LRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEI 176
            R V  E+ Q  A++  N  F+ETSA    NV+  F  ++ +I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 94.4 bits (235), Expect = 6e-24
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V++GD   GK+  + R    EF    + TIGVE        +   ++   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY     A++++D+T R ++ ++  W  +L     +NI I+L GNK D+ + 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           R V  +    F +++NL + E SA    N E  FL
Sbjct: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFL 165

Length = 219

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 92.7 bits (231), Expect = 9e-24
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G S VGKS L  RF    F  + +  +   + ++ ++ID + V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 77  YRAV--TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDL 132
                      R A G +LVY +T R SFD +++ L  +R     D  I ++L+GNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALE-ATNVETAFLTVLTEIYR 178
              R V TE+ Q+ A      F E SA E    V+  F  +  E+ R
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           ++VV+ G   VGKS L+ RF +  F      TI   ++ + +S        QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA---RWLDELRGHADKNIVIMLIGNKCDL 132
           ++ A+           +LVY +T +QS + +      + E++G+  + I IML+GNKCD 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173
              R V + +    A+  N  FMETSA    NV+  F  +L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 2e-23
 Identities = 41/163 (25%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 19  VLIGDSAVGKSQLLARFARNEFSVDSKATIG-VEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           V++G   VGKS LL      E    S       +       +D   VK  + DT G + +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 78  -----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
                  +     RGA   +LV D T R+S +     +          I+  L+GNK DL
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPII--LVGNKIDL 118

Query: 133 GSLRAV-PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
              R V      +E A+   +   E SA     V+  F  ++ 
Sbjct: 119 LEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 92.3 bits (229), Expect = 6e-23
 Identities = 72/239 (30%), Positives = 102/239 (42%), Gaps = 54/239 (22%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KVVL+GD  VGK+ LL R+    F  D+ +T+G  F  K            IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW----GPYNISIWDTAGREQ 56

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           +  + S Y RGA   +L YD++  QS + +  R+L  L   A+++ +  ++GNK DL   
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLG-LTDTANEDCLFAVVGNKLDLTEE 115

Query: 133 ----------GSL------RAVPTEDAQEFAQRENLFFM--------------ETSALEA 162
                     G        R V  EDA+ F +R N + M              ETSA   
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 163 TNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
            NV+  F  +   +  +I  +   AN      G  NL    R           SK  CC
Sbjct: 176 YNVDELFEYLFNLVLPLILAQRAEANRT---QGTVNLPNPKR-----------SKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 86.3 bits (214), Expect = 8e-22
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KVV+IGD   GKS LL++    EF  +     G      TL +D  T    IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR---WLDELRGHADKNIVIMLIGNKC 130
            +     + + A   +LVYD+T R+S + ++R   WL  LR      I ++L+GNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 85.5 bits (212), Expect = 7e-21
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ L+GD+ +GK+ L+ ++   EF  +   T+GV F  KT+SI    +   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           +  +     + AV  + ++D+T++ + + +  W  + RG     I I L+G K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL--FA 118

Query: 137 AVPTED-------AQEFAQREN--LFFMETSALEATNVETAFLTVLTEIY 177
            +P E+       A+++A+     L F   S   + NV+  F  VL +++
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 15/180 (8%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D   K+V++GD   GK+ LL  +A+  F  +   T+   + T     + K ++  +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD 131
           GQE Y  +    Y      ++ Y +    S D++  +W  E+  H      I+L+G K D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKTD 119

Query: 132 LGS-------LRA-----VPTEDAQEFAQRENLF-FMETSALEATNVETAFLTVLTEIYR 178
           L         LRA     V  E  +  A+      ++E SA    NV+  F   +     
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 80.4 bits (198), Expect = 8e-19
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 21  IGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80
           +GD   GK+  + R    EF     AT+GVE        +   ++  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 81  TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140
              YY     A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   R V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKVKA 118

Query: 141 EDAQEFAQRENLFFMETSALEATNVETAFL 170
           +    F +++NL + + SA    N E  FL
Sbjct: 119 KSIT-FHRKKNLQYYDISAKSNYNFEKPFL 147

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 78.0 bits (192), Expect = 4e-18
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V +GD AVGK+ +L  +  N F  D   T+   F +  + +D  TV   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL 135
           Y  +    YRGA   +L + +  + S++++  +W+ ELR +A   + I+L+G K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 136 R--------AVPTEDAQEFAQRENL---FFMETSALEATNVETAFLT 171
           +        AVP   AQ    R+ +    ++E S+    NV+  F  
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K VL+GD AVGK+ L+  +  N +  +   T    F +  + +D K V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDE 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL--- 132
           +  +    Y      +L + +    SF +++ +W+ E+R H  K  +I L+G + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII-LVGTQADLRTD 119

Query: 133 ---------GSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAF 169
                       + V    A+  A++     ++E SAL   N++  F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 74.9 bits (184), Expect = 9e-17
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           ++V +G + VGK+ L+ RF  + F    + T+  E  +K   +    V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           + A+     +      LVY +   +SF+ + R  +E L    DK + I+++GNK D  + 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 136 RAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLTE 175
           R V   DA    + + N  F+E SA +  NV   F  +L +
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           ++VVL+GDS VGKS L   F    +   +    G +   +T+S+D +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLGS 134
               +  +  +     ++VY +T R SF+  +    +LR     ++I I+L+GNK DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
            R V  ++ +  A   +  F+ETSA    NV+  F
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 72.6 bits (178), Expect = 6e-16
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KVV++GD A GK+ LL  F R  F    + T+  E     + +D   V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           +  + S  Y      ML + +    S +++ ++WL E+R H    + ++L+  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLREP 119

Query: 136 RAVPT--------EDAQEFAQREN-LFFMETSALEATNVETAFL 170
           R            E+    A+R N   ++E SA     V  AF 
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFT 163

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +++V++G S VGK+ +++RF    F      TI  +F  K  SI  +  +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 76  RYRAVTS-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK---------NIVIML 125
            + A+   +   G V  +LV+ +  R+SF+ + R  +++                I +++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 126 IGNKCDLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVETAFLTVLT 174
            GNK D    R V  ++ ++     EN  + E SA + +N++  F  + +
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL-SIDHKTVKAQIWDTAGQE 75
           K++L+G   VGK+ L  +    +F  D  +T G+  Q   + + + K ++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 76  RYRAV------TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK 129
            Y A       + + Y      +LV+D+        +  WL +++     + VI L+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI-LVGTH 115

Query: 130 CDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166
            D      +  +   +            S      + 
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 14/165 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F   EF  +   T+   + T    +D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  +    Y  A   ++ + +    S +++  +W++E+R +   N+ ++L+G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 133 -------GSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAF 169
                   +   VP + A+  A+      +ME SAL    V+  F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS- 134
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 135 -----------LRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFLT 171
                         V  E+ +  A++   F ++E SA     V   F  
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEM 169

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G    GK+ +L +    E  V +  TIG  F  +T  +++K VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
            R +   YY    G + V D + R+  +     L +L    + K   ++++ NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N F  +   T+   +  +T ++D +TV   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  + +  Y      ++ + +    S++++  +W  E+  H   N+ I+L+G K DL   
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDLRND 122

Query: 133 ----------GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
                     G     P +      Q   + ++E SAL    V+  F
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K DL   
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 133 ---------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                      L  +        A+      ++E SAL    ++T F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+GDS  GK+ LL  FA++ F  +   T+  E  T +  +D + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   ++ +D+++ ++ D  + +W  E+R     N  ++L+G K DL
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDL 117

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L +    E  V +  TIG  F  +T++   K VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEI-VTTIPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
             R +   Y+      + V D   R   +     L  L    +  +  ++++ NK DL
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GDS  GK+ LL  FA++ F  +   T+  E  T +  ID + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   ++ +D+++ ++ D + + W  E++     N  ++L+G K DL
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIG--VEFQTKTLSIDHKTVKAQIWDTAG 73
           +KV+++G    GK+ +L +F   E  V +  TIG  VE       I +K ++  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
           QE  R+  + YY      +LV D T R+        L ++  H D +  V++++ NK DL
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            S L+G+   +I      +++G  A GK+ +L +    E SV +  TIG   +T    + 
Sbjct: 5   FSKLFGNKEMRI------LMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVET----VT 53

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH----MARWL--DELR 114
           +K +   +WD  GQ++ R +   YY    G + V D   R   D     + R L  DELR
Sbjct: 54  YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELR 113

Query: 115 GHADKNIVIMLIGNKCDL 132
                + VI++  NK DL
Sbjct: 114 -----DAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 17  KVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +V+L+G DSA GKS LL +    E  V +  T+G  F  + L ++ K +   +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKLKHAEL-VTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQE 55

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           + R V   Y     G + V D +     D   + L   L+    K + ++L+ NK DL  
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115

Query: 135 LRAVPTEDAQE------FAQRENLFFMETSALEATNVETAFLTV 172
             A+  E+         +    + +    SA+    +  AF  +
Sbjct: 116 --ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 34/176 (19%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-----DHKTVKAQIWDT 71
           KV+++GDS VGKS L+    +N+   +   T+G     +  +      + KT   ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 72  AGQ----ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-------------- 113
            G     E  ++  + +Y    G + V+D+T ++S  ++ RW  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 114 -----RGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN 164
                   A   + +++IG K D         E  + +      F  E    E  N
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIP------EAKRNWVLTRTAFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 48/171 (28%), Positives = 68/171 (39%), Gaps = 34/171 (19%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFS-----VDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
           ++VLIGD  VGKS L+      EF      V  + TI  +   + +          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT-------TIVDT 56

Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKC 130
           + + + RA  +A  R A    LVY + +  + + +  +WL  +R    K  +I L+GNK 
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII-LVGNKS 115

Query: 131 DLGSLRAVPTEDAQEFAQREN--LFFM----------ETSALEATNVETAF 169
           DL         D    A  E   L  M          E SA    NV   F
Sbjct: 116 DL--------RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   +L +D+++ + FD  + +W  E+  +   +  I+LIG K DL
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           + L+G    GK+ L+   A  +FS D+  T+G  F  + ++  + T+K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 78  RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL--RGHADKNIVIMLIGNKCDL-GS 134
           R++   Y RG    + V D   R+  +     L +L  +   +  I ++++GNK DL G+
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEG-IPLLVLGNKNDLPGA 116

Query: 135 LRA---VPTEDAQEFAQRENLFFMETSALEATNVET 167
           L     +   + +    RE   +   SA E TN++ 
Sbjct: 117 LSVDELIEQMNLKSITDREVSCYS-ISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 14/153 (9%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           +S L+G+   +I      +++G  A GK+ +L +    + SV +  T+G   +T T    
Sbjct: 1   LSKLFGNKEMRI------LMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT---- 49

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-K 119
           +K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L  +    + +
Sbjct: 50  YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMR 109

Query: 120 NIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL 152
           + ++++  NK DL    A+   + QE      +
Sbjct: 110 DALLLVFANKQDLPD--AMKPHEIQEKLGLTRI 140

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSK--------ATIGVEFQTKTLSIDHKTVKAQIW 69
           V+++G    GK+  L +  + +FS + K         T+G+   T    I+    +   W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT----IEVGKARLMFW 56

Query: 70  DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGN 128
           D  GQE  R++   YY  + G + V D T R+ F+      ++ +   A + + ++++ N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 129 KCDLGSLRAVPT-----EDAQEFAQRENLFFMETSALEATNVETA 168
           K DL    +V       +D      R +      SALE   VE  
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD+  GK+ LL  FA++ +      T+  E  T +  ID   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   ++ +D+++ ++ D  + +W  E +     N  ++L+G K D+
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVGCKLDM 117

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +A + F  +   T+  +    ++++  K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LIG + DL
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDL 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI---DHKTVKAQIWDTA 72
             +V++G  + GK+ +L R   NEF V++  T G  F T+ + +   + K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADKNIVIMLIGNKCD 131
           GQE+ R +  +Y R   G + V D    +  +     L ++ +   ++ + ++++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 132 LGS 134
           L +
Sbjct: 121 LPN 123

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL----------SIDHKTVK- 65
           +V+++GDS VGKS L+    +         TIG     K +          SI   + + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 66  --AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL 113
              ++WD +G ERY+   S +Y    G + V+D+++R++   + +W  E+
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132

Length = 334

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 16/122 (13%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQ----SFDHMARWL--DELRGHADKNIVIMLIGNKC 130
            R +   YY+   G + V D   R+    + + + R L  DELR     + V+++  NK 
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELR-----DAVLLVFANKQ 128

Query: 131 DL 132
           DL
Sbjct: 129 DL 130

Length = 182

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 17  KVVLIGDSAVGKSQLLARFARNE---FSVDSKATIGVEFQTKTLSIDHKTV------KAQ 67
           K+V+IG    GK+  +   +         D+ +  G   +  T+++D  ++         
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71

Query: 68  IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIG 127
           ++ T GQER++ +     RGAVGA+++ D ++  +F H    +D L     +N + +++ 
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT---SRNPIPVVVA 127

Query: 128 -NKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALEATNVETAFLTVL 173
            NK DL    A+P E  +E  + E   +  +E  A E          +L
Sbjct: 128 INKQDLFD--ALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDL 117

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +VV +G    GK+ +L +  ++EF +    TIG   +T    +++K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135
            R +   YY      + V D + R         L +L    + ++ ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG- 114

Query: 136 RAVPTEDAQEF 146
            A+  E+  E 
Sbjct: 115 -ALSVEEMTEL 124

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNKC 130
            R +   Y++   G + V D   R    ++ D + R L  DELR     + V+++  NK 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANKQ 128

Query: 131 DL 132
           DL
Sbjct: 129 DL 130

Length = 181

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD----- 70
            +V ++G   VGK+ ++ +F   EF  +   T         + +  +     I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 71  ----TAGQE----RYRAV--TSAYYRGAVGAMLVYDMTKRQSFDH---MARWLDELRGHA 117
               TAGQE    R+R +  + A+       +LVYD+    SF +   + + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 118 DKNIVIMLIGNKCDLGSLRAVP 139
           +K   I+++GNK D    R  P
Sbjct: 114 NKEPPIVVVGNKRDQQRHRFAP 135

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL------DELRGHADKNIVIMLIGNKC 130
            R +   Y++   G + V D   R+        L      DELR     + V+++  NK 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELR-----DAVLLVFANKQ 111

Query: 131 DL 132
           DL
Sbjct: 112 DL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++L+G    GK+ +L + A  + S     T G  F  K +  D    K  +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKNVQADGF--KLNVWDIGGQRK 71

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCDLGSL 135
            R     Y+      + V D   R+ F+   + L EL        V +L+  NK DL  L
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL--L 129

Query: 136 RAVPTEDAQEFAQRENL 152
            A P   A+E A+  NL
Sbjct: 130 TAAP---AEEVAEALNL 143

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 38/189 (20%)

Query: 16  FKVVLIGDSAVGK---------------SQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            K V++GD+AVGK                QLLA      +++D         +     +D
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADK 119
             +V  ++WDT G +  +    AY R  V  +L + +    S  ++   W  E+R     
Sbjct: 63  GVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFC-P 119

Query: 120 NIVIMLIGNKCDL-------------GSLRA------VPTEDAQEFAQRENLFFMETSAL 160
            + ++L+G K DL                R       +P E  +  A+   + + ETS +
Sbjct: 120 RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVV 179

Query: 161 EATNVETAF 169
               V+  F
Sbjct: 180 TQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G    GK+ +L R    E  V +  TIG   +T    + +K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQTS 55

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDL 132
            R     YY      + V D T R   D +     EL    +    K+ V+++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 15/129 (11%)

Query: 18  VVLIGDSAVGKSQLLARFAR-NEFSVDSKATIG--VE-FQTKTLSIDHKTVKAQIWDTAG 73
           ++++G    GK+ ++ +    N  S +   T+G  VE F+   LS          +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSF-------TAFDMSG 54

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKC 130
           Q +YR +   YY+   G + V D + R         L+ L  H D   + I I+   NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 131 DL-GSLRAV 138
           DL  +L AV
Sbjct: 115 DLPDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 33/175 (18%)

Query: 19  VLIGDSAVGKSQLLARFARNEFSVDSKATIGV---EFQTKTLSI---DHKT-VKAQIWDT 71
            L+G   VGKS L         S  + A + +    F T   ++   +    V  QI D 
Sbjct: 1   GLVGLPNVGKSTL--------LSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDL 52

Query: 72  AG--------QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----- 118
            G        +     + +  YR  +    V D ++    D +      L          
Sbjct: 53  PGLLDGASEGRGLGEQILAHLYRSDLILH-VIDASEDCVGDPL-EDQKTLNEEVSGSFLF 110

Query: 119 -KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
            KN   M++ NK D+ S          +  +R  +  + TSAL    ++    T+
Sbjct: 111 LKNKPEMIVANKIDMAS-ENNLKRLKLDKLKRG-IPVVPTSALTRLGLDRVIRTI 163

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
PTZ00099	176	rab6; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK04213	201	GTP-binding protein; Provisional	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
PRK11058	426	GTPase HflX; Provisional	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
COG1159	298	Era GTPase [General function prediction only]	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.83
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.83
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.81
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.78
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
PRK12736	394	elongation factor Tu; Reviewed	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
CHL00071	409	tufA elongation factor Tu	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.74
KOG1145	683	consensus Mitochondrial translation initiation fac	99.74
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.73
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
COG2262	411	HflX GTPases [General function prediction only]	99.72
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
PLN03126	478	Elongation factor Tu; Provisional	99.71
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.71
COG0218	200	Predicted GTPase [General function prediction only	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.69
COG1163	365	DRG Predicted GTPase [General function prediction	99.68
COG3596	296	Predicted GTPase [General function prediction only	99.67
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.63
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.63
PRK12739	691	elongation factor G; Reviewed	99.62
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
COG0536	369	Obg Predicted GTPase [General function prediction	99.61
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
PRK09866	741	hypothetical protein; Provisional	99.59
PRK00007	693	elongation factor G; Reviewed	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.57
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.54
PRK12740	668	elongation factor G; Reviewed	99.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.52
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.52
KOG0090	238	consensus Signal recognition particle receptor, be	99.52
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.52
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.5
PRK09602	396	translation-associated GTPase; Reviewed	99.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.49
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.49
PRK07560	731	elongation factor EF-2; Reviewed	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.48
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.47
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.47
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.47
PTZ00258	390	GTP-binding protein; Provisional	99.44
PRK14845	1049	translation initiation factor IF-2; Provisional	99.43
PTZ00416	836	elongation factor 2; Provisional	99.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.41
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.4
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.38
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.36
PRK13768	253	GTPase; Provisional	99.36
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.35
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.33
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.33
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.32
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.32
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.32
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.28
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.28
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.28
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.27
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.26
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.23
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.23
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.19
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.18
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.14
KOG0410	410	consensus Predicted GTP binding protein [General f	99.06
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.05
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.05
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.05
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.03
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.03
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.02
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.02
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.01
KOG0460	449	consensus Mitochondrial translation elongation fac	98.99
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.9
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.85
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.83
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.82
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.82
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.82
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.81
PRK00098	298	GTPase RsgA; Reviewed	98.77
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.77
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.76
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.75
PRK12288	347	GTPase RsgA; Reviewed	98.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.72
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.68
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.67
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.66
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.65
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.65
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.64
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.61
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.61
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.6
COG1161	322	Predicted GTPases [General function prediction onl	98.59
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.58
KOG2486	320	consensus Predicted GTPase [General function predi	98.57
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.56
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.56
PRK10416	318	signal recognition particle-docking protein FtsY;	98.56
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.53
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.53
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.51
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.5
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.49
PRK14974	336	cell division protein FtsY; Provisional	98.47
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.47
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.46
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.45
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.44
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.42
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.4
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG1143	591	consensus Predicted translation elongation factor	98.37
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.35
cd03112	158	CobW_like The function of this protein family is u	98.33
PRK12288	347	GTPase RsgA; Reviewed	98.33
PRK12289	352	GTPase RsgA; Reviewed	98.33
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.31
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.29
PRK13796	365	GTPase YqeH; Provisional	98.27
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.22
PRK13796	365	GTPase YqeH; Provisional	98.22
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.19
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.19
PRK01889	356	GTPase RsgA; Reviewed	98.16
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.15
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.09
PRK13695	174	putative NTPase; Provisional	98.08
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.08
COG1162	301	Predicted GTPases [General function prediction onl	98.06
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.06
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK00098	298	GTPase RsgA; Reviewed	98.04
COG3523	1188	IcmF Type VI protein secretion system component Va	98.02
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.02
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
cd03114	148	ArgK-like The function of this protein family is u	98.01
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.01
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.0
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.0
PRK10867	433	signal recognition particle protein; Provisional	97.98
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.95
TIGR00959	428	ffh signal recognition particle protein. This mode	97.94
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.93
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.88
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.88
COG1162	301	Predicted GTPases [General function prediction onl	97.85
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.84
COG0523	323	Putative GTPases (G3E family) [General function pr	97.84
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.84
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.8
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.78
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.77
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.76
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.69
KOG2484	435	consensus GTPase [General function prediction only	97.68
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.67
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.67
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.65
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.62
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.59
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.56
cd03111	106	CpaE_like This protein family consists of proteins	97.55
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.53
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.5
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.49
cd03110	179	Fer4_NifH_child This protein family's function is	97.47
PF00004	132	AAA: ATPase family associated with various cellula	97.39
PRK14738	206	gmk guanylate kinase; Provisional	97.38
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.38
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.38
cd02036	179	MinD Bacterial cell division requires the formatio	97.36
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.35
KOG1533	290	consensus Predicted GTPase [General function predi	97.34
PRK08118	167	topology modulation protein; Reviewed	97.32
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.29
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.28
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.28
PRK07261	171	topology modulation protein; Provisional	97.27
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.24
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.22
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.21
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.2
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.15
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.14
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.12
PRK14737	186	gmk guanylate kinase; Provisional	97.12
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.12
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.11
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.09
PRK10646	153	ADP-binding protein; Provisional	97.07
PRK04195	482	replication factor C large subunit; Provisional	97.06
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.06
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.05
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.02
COG0802	149	Predicted ATPase or kinase [General function predi	97.0
PRK01889	356	GTPase RsgA; Reviewed	96.99
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.97
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.95
smart00382	148	AAA ATPases associated with a variety of cellular	96.95
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.94
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.93
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.93
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.92
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.92
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.91
PRK06217	183	hypothetical protein; Validated	96.9
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.9
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.9
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.89
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.88
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.88
COG1161	322	Predicted GTPases [General function prediction onl	96.85
PRK03839	180	putative kinase; Provisional	96.85
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.82
PRK14530	215	adenylate kinase; Provisional	96.82
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.81
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.8
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.8
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.79
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.78
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.78
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.77
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.77
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.76
PRK05480	209	uridine/cytidine kinase; Provisional	96.76
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.75
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.74
PRK13851	344	type IV secretion system protein VirB11; Provision	96.74
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.73
PRK13949	169	shikimate kinase; Provisional	96.72

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-42  Score=247.72  Aligned_cols=180  Identities=49%  Similarity=0.822  Sum_probs=170.7

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      ++....+.+||+|+|+.|||||+|+.|+.+..+...+..|+|+++..+++.++++.+.+++|||+|+++++++...|+++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  166 (224)
                      |+|+|+|||+++.+||..+..|+..+.++...++|.++|+||+|+.+.+.++.+++++|+.+++++ |+++||+++.|++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999999889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCc
Q 027382          167 TAFLTVLTEIYRIISKKSLTA  187 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~~~~~~  187 (224)
                      ++|..+...+.++........
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCC
Confidence            999999988877766654444

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-40  Score=239.93  Aligned_cols=177  Identities=44%  Similarity=0.816  Sum_probs=169.6

Q ss_pred             CCCc-ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382            7 DYNQ-KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY   85 (224)
Q Consensus         7 ~~~~-~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   85 (224)
                      .+++ ++...+||+++|+++||||+|+.++..+.+...+..|.|+++..+++.+++..+.+++|||+|+++++.+...|+
T Consensus         3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy   82 (207)
T KOG0078|consen    3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY   82 (207)
T ss_pred             ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence            3455 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      +.|+++++|||+++..|++.+..|+..+.++...++|.++|+||+|+.+.++++.+..++++.++|+.|+|+||++|.||
T Consensus        83 rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI  162 (207)
T KOG0078|consen   83 RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNI  162 (207)
T ss_pred             hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 027382          166 ETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~~~  183 (224)
                      +++|..+.+.+.......
T Consensus       163 ~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  163 EEAFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHHHHHhhcchh
Confidence            999999999998755544

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-40  Score=238.14  Aligned_cols=184  Identities=71%  Similarity=1.128  Sum_probs=175.4

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      ....++++.+||+++|++++|||-|+.++..+++...+.+|+|+++.+..+.++++.+..++|||+|+++|++....|++
T Consensus         6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      ++.++++|||++...+|+.+.+|+..++.+...++++++|+||+||..-+.++.++++.++++.++.|+++||.++.|++
T Consensus        86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence            99999999999999999999999999999998999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCcCcc
Q 027382          167 TAFLTVLTEIYRIISKKSLTANDE  190 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~~~~~~~~~  190 (224)
                      ++|..++..|++...++.......
T Consensus       166 ~aF~~~l~~I~~~vs~k~~~~~~~  189 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVSKKQLDENND  189 (222)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccc
Confidence            999999999999998876665543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-40  Score=236.73  Aligned_cols=198  Identities=42%  Similarity=0.707  Sum_probs=173.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|+.+||||||+.|+..+.+.....+|+|..+.++.+.+....+++.+|||+|+++|+++.+.|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|||+++.+||..++.|+..+.+..++++.+.+++||+|+.+.+++..++++.++...++.|+++||++|.|+.++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888899999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382          173 LTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL  222 (224)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  222 (224)
                      .+.+.........         +.+..+++..+...+   .....++||+
T Consensus       163 a~~lp~~~~~~~~---------~~~~~~~g~~l~~~~---~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQ---------GLPNRRQGVDLNSNQ---EPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccc---------cccccccceecccCC---CCcCcCCcCC
Confidence            9888655444332         222222333333332   4446777874

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-40  Score=235.77  Aligned_cols=168  Identities=37%  Similarity=0.695  Sum_probs=159.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|+.+|||||||+++..+.+...|.+|+|+++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||+++..||+...+|++.+.+.+.. ++.+++|+||.||.+.+++..++.+..++++++.|+++||+.|.||.++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999988874 58899999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHHh
Q 027382          173 LTEIYRIIS  181 (224)
Q Consensus       173 ~~~i~~~~~  181 (224)
                      ...+.+...
T Consensus       181 aa~l~~~~~  189 (221)
T KOG0094|consen  181 AAALPGMEV  189 (221)
T ss_pred             HHhccCccc
Confidence            776655544

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-39  Score=230.24  Aligned_cols=179  Identities=51%  Similarity=0.869  Sum_probs=170.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +.+.+|++++|+.|||||+|+.++....+.+.+..|.|.++....+.++++.+++++|||+|++.+++....|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |+|||++.+++|..+..|+..++++...+..+++++||+||...+.++.+|.+.|++++++.++++||++++|++++|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCcCcc
Q 027382          172 VLTEIYRIISKKSLTANDE  190 (224)
Q Consensus       172 i~~~i~~~~~~~~~~~~~~  190 (224)
                      ....|++..+..-.....+
T Consensus       163 ta~~Iy~~~q~g~~~~~~~  181 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVFDDINE  181 (216)
T ss_pred             HHHHHHHHHHhcccccccc
Confidence            9999999988765555444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-38  Score=220.55  Aligned_cols=202  Identities=41%  Similarity=0.658  Sum_probs=173.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .+...+||+++|.+|+|||||+-++..+.+......|+|.++..+.+.+++..+++.+|||+|+++|+.+.+.|+++|.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            45677999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +|+|||++.+++|..+..|++.+.-... +++..++|+||+|.+.++.++.++...|++++++.|+++||++.+|+...|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            9999999999999999999999987663 678889999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCccccC
Q 027382          170 LTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS  223 (224)
Q Consensus       170 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  223 (224)
                      +.+++.|++.-.-+...+.           ..+-.|--.|..+.+..+++||.|
T Consensus       167 eelveKIi~tp~l~~~~n~-----------~~~~~i~~~p~~~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  167 EELVEKIIETPSLWEEGNS-----------SAGLDIASDPDGEASAHQGGCCSC  209 (209)
T ss_pred             HHHHHHHhcCcchhhccCC-----------ccccccccCCCcccccccCCccCC
Confidence            9999988764333321110           111112223344445566889976

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=5.8e-37  Score=234.48  Aligned_cols=208  Identities=65%  Similarity=1.019  Sum_probs=172.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            45678999999999999999999999999888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++++++.+..|+..+.+....++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877666899999999999977777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382          171 TVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL  222 (224)
Q Consensus       171 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  222 (224)
                      .++..+.+.............+..+++  .++..+..  .+..+.+++|||.
T Consensus       168 ~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~c~  215 (216)
T PLN03110        168 TILLEIYHIISKKALAAQEAAANSGLP--GQGTTINV--ADTSGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHHhhccccccccCcccccCc--CcCCcccc--cCccCCCCCCCcC
Confidence            999999887554433222112111222  22332322  2335667788873

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=9.6e-37  Score=231.11  Aligned_cols=168  Identities=38%  Similarity=0.659  Sum_probs=150.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888998888877777777 7889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAF  169 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~  169 (224)
                      ||++++++++.+..|+..+....    ..++|+++|+||+|+.+.+.+..++++++++.++ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876532    2578999999999997666778889999999998 689999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027382          170 LTVLTEIYRIISKK  183 (224)
Q Consensus       170 ~~i~~~i~~~~~~~  183 (224)
                      .++++.+.+.....
T Consensus       161 ~~l~~~l~~~~~~~  174 (201)
T cd04107         161 RFLVKNILANDKNL  174 (201)
T ss_pred             HHHHHHHHHhchhh
Confidence            99999887654443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.9e-36  Score=226.45  Aligned_cols=171  Identities=36%  Similarity=0.647  Sum_probs=155.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..+||+++|..|||||||+.++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            35678999999999999999999999988877777787888877888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++++++.+..|+..+.+.. .+.|++||+||.|+...+.++.++++.+++.++++|+++||++|.|++++|.
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999997765 4799999999999987778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 027382          171 TVLTEIYRIISK  182 (224)
Q Consensus       171 ~i~~~i~~~~~~  182 (224)
                      ++...+......
T Consensus       161 ~l~~~i~~~~~~  172 (189)
T cd04121         161 ELARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHHhcCC
Confidence            999888755443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.3e-36  Score=227.16  Aligned_cols=165  Identities=38%  Similarity=0.745  Sum_probs=151.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +.|+++|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++++++.+..|+..+.+....+.|+++|+||+|+.+.+.+..++++++++++ ++.|+++||++|.|++++|.+++.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766668999999999999877888888999999885 788999999999999999999998


Q ss_pred             HHHHHH
Q 027382          175 EIYRII  180 (224)
Q Consensus       175 ~i~~~~  180 (224)
                      .+.+..
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            886653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=211.88  Aligned_cols=172  Identities=46%  Similarity=0.759  Sum_probs=163.6

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      ..+...++.+++|++|+|||+|+.++..+.+..+|..|+|+++..+++.+++..+.+.+||++|++.++.+...+++..+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            34667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|+|||+++.+||.+..+|+..+++.+. .+|-++|+||.|.++.+.+..++++.|+...++.+|++|+++++|++..|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            99999999999999999999999998876 89999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 027382          170 LTVLTEIYRIISK  182 (224)
Q Consensus       170 ~~i~~~i~~~~~~  182 (224)
                      .-|...+++...+
T Consensus       162 ~cit~qvl~~k~r  174 (198)
T KOG0079|consen  162 HCITKQVLQAKLR  174 (198)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998887733

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.4e-35  Score=224.71  Aligned_cols=208  Identities=39%  Similarity=0.685  Sum_probs=172.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      .+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988888888888887777776 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+.+... ...|+++|+||.|+.+.+.+..++..++++.++++++++||++|.|++++|+.|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 457889999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382          173 LTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL  222 (224)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  222 (224)
                      .+.+.+.+..........-.-...-...+...-+....+....-..+|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            99998887766544444443333444444444455555665555556664

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-36  Score=208.54  Aligned_cols=208  Identities=44%  Similarity=0.707  Sum_probs=184.4

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      -+.+++.+|++++|+.|+|||.|+++++.+.+.....+|+|+++....+.+.++.+++++|||.|++.+++..+.|++++
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      -+.++|||+++++++..+..|+...+....+++.+++++||.|+...++++..++.+|++++.+.+.++|+++|+|+++.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeee--cCCCCCCCCCCcc
Q 027382          169 FLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIV--PGQDQNSASKRGC  220 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c  220 (224)
                      |-.....|+.++...+..+++.    +.-...++..+-+  +|+.....++..|
T Consensus       163 Fl~c~~tIl~kIE~GElDPer~----gsGIQYGdaslR~l~~p~s~r~~n~~~c  212 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDPERM----GSGIQYGDASLRQLRQPRSARAVNPQPC  212 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHc----ccccccchhhhhccCCcchhccCCCCCC
Confidence            9999999999888877766553    2334445544433  3333344555555

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=215.57  Aligned_cols=172  Identities=37%  Similarity=0.656  Sum_probs=159.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .+...+||+++|++|+|||||++++.+..+...+..|+|.++..+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcC-CeEEEEcCCCCC
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSL--RAVPTEDAQEFAQREN-LFFMETSALEAT  163 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~  163 (224)
                      +++|||++++.+++.+..|.+.+.....    ...|+|+++||+|+++.  ++++...+++||...+ +||+++|||+..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999998876653    57899999999999753  7889999999998865 899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q 027382          164 NVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~~~~  182 (224)
                      ||+++|..+...++.....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999988776654

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6.1e-35  Score=220.83  Aligned_cols=171  Identities=46%  Similarity=0.727  Sum_probs=153.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            34689999999999999999999999988878888888888777787888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+.... ...|+++|+||+|+.+...+..+++.+++...+.+++++|+++|.|++++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999999887654 37899999999999876677788899999998999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027382          172 VLTEIYRIISKK  183 (224)
Q Consensus       172 i~~~i~~~~~~~  183 (224)
                      +...+.......
T Consensus       162 l~~~~~~~~~~~  173 (199)
T cd04110         162 ITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHhhhcc
Confidence            999887665444

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=220.92  Aligned_cols=207  Identities=46%  Similarity=0.816  Sum_probs=169.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34679999999999999999999999988888888888888877888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||+++++++..+..|+..+........|+++++||+|+.+.+.+..++++++++.++++++++||+++.|++++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877665568999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCcCccccccCCccCCCC-eeeeecCCCCCCCCCCccc
Q 027382          172 VLTEIYRIISKKSLTANDEHDVAGNSNLLKG-TRIIVPGQDQNSASKRGCC  221 (224)
Q Consensus       172 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~  221 (224)
                      +++.+++..........   +.......+.+ ..=-.-+.+-.+.+.+|||
T Consensus       163 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        163 TAAKIYKKIQDGVFDVS---NESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHhhhcccccc---ccccccccccCCCCCCCCCccccccCCCCCC
Confidence            99998876543322111   11111111111 1111234666777888998

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.9e-35  Score=224.38  Aligned_cols=187  Identities=34%  Similarity=0.543  Sum_probs=155.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||+++|.++.+.. +.++.+..+....    ...+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 5667665554332    35678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS-------------------LRAVPTEDAQEFAQREN-----  151 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  151 (224)
                      |++++++++.+..|+..+.+....+.|+++|+||+|+.+                   .+.+..++++.++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988777765556799999999999965                   57788899999999876     


Q ss_pred             ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCccc
Q 027382          152 ---------LFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC  221 (224)
Q Consensus       152 ---------~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  221 (224)
                               ++|+++||++|.||+++|..++..+++.........++-+..+              .++..+++|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV--------------NLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------------cCCCcccCCCCCC
Confidence                     6799999999999999999999999888777655444421111              1334677899998

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-36  Score=205.44  Aligned_cols=177  Identities=41%  Similarity=0.750  Sum_probs=166.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ++.+...+||+++|..|+|||.|++++..+-+++....|+|.++..+++.+++..+++++|||.|+++++++...|++.+
T Consensus         1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +++|+|||++...+|+-+.+|+..+.+.....+.-++|+||+|+.+.++++.+..++|.......|.++||++.+|++.+
T Consensus        81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            99999999999999999999999999998878889999999999998899999999999998889999999999999999


Q ss_pred             HHHHHHHHHHHHhcccC
Q 027382          169 FLTVLTEIYRIISKKSL  185 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~~~  185 (224)
                      |..+.-.+.........
T Consensus       161 f~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  161 FLDLACRLISEARQNDL  177 (213)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99998877776655544

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.1e-34  Score=222.01  Aligned_cols=164  Identities=34%  Similarity=0.555  Sum_probs=148.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999988888777777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ||++++++++.+..|+..+.+...   .+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998887642   35789999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          172 VLTEIYRI  179 (224)
Q Consensus       172 i~~~i~~~  179 (224)
                      +...+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99888764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2e-34  Score=216.21  Aligned_cols=168  Identities=45%  Similarity=0.778  Sum_probs=151.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999987778888888887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |+++++++..+..|+..+........|+++++||.|+.+.+.+..+++..++...+++++++||++|.|++++|.++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887666678999999999998767778888889999889999999999999999999999999


Q ss_pred             HHHHHhcc
Q 027382          176 IYRIISKK  183 (224)
Q Consensus       176 i~~~~~~~  183 (224)
                      +.+.....
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            87654433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-35  Score=202.08  Aligned_cols=177  Identities=40%  Similarity=0.743  Sum_probs=166.6

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      ..+..+..+|++++|...+|||||+.++.+..+...+..|.|+++..+++.-..+.+.+++|||.|++.++.+...++++
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            34456778899999999999999999999999999999999999999988777888999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      ++++|++||+++.+++..+..|...+......+.|+|+++||+|+++++.++.+..+.++.++|+.|+++||+.+.|+++
T Consensus        94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q 027382          168 AFLTVLTEIYRIISKKS  184 (224)
Q Consensus       168 ~~~~i~~~i~~~~~~~~  184 (224)
                      +|+.++..|...+....
T Consensus       174 ~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  174 VFERLVDIICDKMSESL  190 (193)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999988876553

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.5e-34  Score=212.75  Aligned_cols=164  Identities=49%  Similarity=0.877  Sum_probs=150.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999988888888888888777788888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++|.|++++|..+..
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766667999999999999877778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027382          175 EIYR  178 (224)
Q Consensus       175 ~i~~  178 (224)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.2e-34  Score=219.87  Aligned_cols=167  Identities=22%  Similarity=0.421  Sum_probs=148.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .-..+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            346789999999999999999999999999889999876654 4577888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      |+|||++++++++.+ ..|+..+.+..+ +.|+++|+||+|+.+            .+.++.++++++++.+++ .|++|
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et  167 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC  167 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence            999999999999985 789998887653 789999999999964            256888999999999998 69999


Q ss_pred             cCCCCC-CHHHHHHHHHHHHHHHH
Q 027382          158 SALEAT-NVETAFLTVLTEIYRII  180 (224)
Q Consensus       158 s~~~~~-~v~~~~~~i~~~i~~~~  180 (224)
                      ||++|. |++++|..++..+++..
T Consensus       168 SAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHHhc
Confidence            999998 89999999998877543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.1e-34  Score=217.86  Aligned_cols=166  Identities=33%  Similarity=0.543  Sum_probs=145.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777778766444 3445577888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ++++++++.+..|+..+.+...   .+.|+++|+||+|+.+.+.+...+..+++..++++++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   4789999999999977677888888899999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 027382          174 TEIYRIISKK  183 (224)
Q Consensus       174 ~~i~~~~~~~  183 (224)
                      +.+.+.....
T Consensus       160 ~~l~~~~~~~  169 (190)
T cd04144         160 RALRQQRQGG  169 (190)
T ss_pred             HHHHHhhccc
Confidence            8887665554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.5e-35  Score=204.54  Aligned_cols=178  Identities=41%  Similarity=0.748  Sum_probs=164.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+.++++|+|++-+|||+|++.+..+.++.-++||+|.++....+.+ .+..+++++|||+|++.++++...|+++.-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            567899999999999999999999999999999999999999888877 6788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +++|||+++.++|+.+..|+........  ..+.+++|++|+|+...++++.++++.++..+++.|+++|+++|.||++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999988776554  44557899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCcCc
Q 027382          169 FLTVLTEIYRIISKKSLTAND  189 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~~~~~~~  189 (224)
                      |..+.+.+...+.+.....++
T Consensus       165 F~mlaqeIf~~i~qGeik~ed  185 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLED  185 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeee
Confidence            999999999999886665554

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5e-34  Score=214.55  Aligned_cols=164  Identities=48%  Similarity=0.775  Sum_probs=147.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+++|++|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5667777777776777888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ||++++++++.+..|+..+.+....++|+++|+||+|+...+.+..++++.++..++++|+++||++|.|++++|.++.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988876668999999999999766677778899999999999999999999999999999998


Q ss_pred             HHHHH
Q 027382          175 EIYRI  179 (224)
Q Consensus       175 ~i~~~  179 (224)
                      .+.+.
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            88655

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.1e-34  Score=210.10  Aligned_cols=165  Identities=47%  Similarity=0.859  Sum_probs=151.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            56999999999999999999999999988889998888877778888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||+++++++..+..|+..+.+....+.|+++++||+|+.+.+.+..+++..++...+.+++++||++|.|++++|.++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999998876666899999999999987677788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          174 TEIYR  178 (224)
Q Consensus       174 ~~i~~  178 (224)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            88754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.8e-34  Score=213.70  Aligned_cols=164  Identities=26%  Similarity=0.497  Sum_probs=146.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35678999999999999999999999999888888877555 35677888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      |+|||++++++++.+ ..|+..+.+.. ++.|+++|+||.|+.+            .+.++.++++++++++++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 78999988765 4799999999999864            245889999999999996 89999


Q ss_pred             cCCCCCC-HHHHHHHHHHHHH
Q 027382          158 SALEATN-VETAFLTVLTEIY  177 (224)
Q Consensus       158 s~~~~~~-v~~~~~~i~~~i~  177 (224)
                      ||++|.| ++++|..++..++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.1e-33  Score=215.80  Aligned_cols=164  Identities=22%  Similarity=0.434  Sum_probs=142.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+|+|++|||||||+++|..+.++..+.||.+..+. ..+.+++..+.+.+|||+|++.+..+++.+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998889999876554 56678889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE  161 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  161 (224)
                      |++++++++.+. .|...+.... .+.|++||+||+|+.+.            ..++.+++..++++.++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999995 5776665543 47999999999999542            13677889999999996 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHh
Q 027382          162 ATN-VETAFLTVLTEIYRIIS  181 (224)
Q Consensus       162 ~~~-v~~~~~~i~~~i~~~~~  181 (224)
                      +.+ |+++|..++...+....
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            985 99999999987665443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.5e-35  Score=203.57  Aligned_cols=180  Identities=34%  Similarity=0.647  Sum_probs=166.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ...+...+||+++|..-+|||||+-++..+.+......|.-..+..+.+.+.+....+++|||.|++.|.++-+.|+++.
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34567899999999999999999999999999887777777788888888888899999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +++++|||++|++||+.++.|...++...+..+.+++|+||+|+++++.++.++++.++...++.|+++||+++.||.++
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            99999999999999999999999999888878999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCcC
Q 027382          169 FLTVLTEIYRIISKKSLTAN  188 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~~~~~~  188 (224)
                      |+.+...+.+..+..+....
T Consensus       167 Fe~Lt~~MiE~~s~~qr~~~  186 (218)
T KOG0088|consen  167 FESLTAKMIEHSSQRQRTRS  186 (218)
T ss_pred             HHHHHHHHHHHhhhcccccC
Confidence            99999999888766655443

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=7.8e-34  Score=210.01  Aligned_cols=165  Identities=32%  Similarity=0.489  Sum_probs=147.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877888876444 34567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.++.++..++++..+++|+++||++|.|++++|.+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988877653 35799999999999987777888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          174 TEIYRII  180 (224)
Q Consensus       174 ~~i~~~~  180 (224)
                      ..+.+..
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            8877643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.8e-34  Score=210.79  Aligned_cols=159  Identities=33%  Similarity=0.571  Sum_probs=143.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888999987655 455667888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382           96 DMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSLR----------AVPTEDAQEFAQRENL-FFMETSALEAT  163 (224)
Q Consensus        96 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  163 (224)
                      |++++++++.+ ..|+..+.+..+ +.|+++|+||+|+.+.+          .+..+++.++++.+++ +|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999876654 79999999999996542          4788899999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEI  176 (224)
Q Consensus       164 ~v~~~~~~i~~~i  176 (224)
                      ||+++|..++..+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.1e-33  Score=206.57  Aligned_cols=163  Identities=52%  Similarity=0.863  Sum_probs=149.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999988888888888888878888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ||+++++++..+..|+..+.+....+.|+++++||.|+...+.+..+++..+++..+++++++||++|.|++++|..+.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988766557999999999999777778888899999999999999999999999999999988


Q ss_pred             HHH
Q 027382          175 EIY  177 (224)
Q Consensus       175 ~i~  177 (224)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.4e-33  Score=206.64  Aligned_cols=160  Identities=42%  Similarity=0.735  Sum_probs=147.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888877777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++++++.+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++..+++|+++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998887665679999999999998777788889999999999999999999999999999999754

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.3e-33  Score=206.27  Aligned_cols=162  Identities=41%  Similarity=0.753  Sum_probs=147.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777788899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++++++.+..|+..+.+......|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665679999999999998767777788889999999999999999999999999999876


Q ss_pred             HH
Q 027382          176 IY  177 (224)
Q Consensus       176 i~  177 (224)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.1e-33  Score=209.25  Aligned_cols=167  Identities=38%  Similarity=0.686  Sum_probs=149.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhH
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------HKTVKAQIWDTAGQERYRAVTS   82 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~   82 (224)
                      ++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            356999999999999999999999999988888888877766665553          4568999999999999999999


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE  161 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (224)
                      .+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++++.+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999887654 24789999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~~  179 (224)
                      |.|++++|+.+++.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=211.23  Aligned_cols=167  Identities=37%  Similarity=0.593  Sum_probs=147.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|.+|||||||++++.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988777878766555 4566778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+.+... .+.|+++|+||.|+.+.+.+...++..++..++.+++++||++|.|+.++|.++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999988876543 578999999999997666777778888988888999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027382          173 LTEIYRIIS  181 (224)
Q Consensus       173 ~~~i~~~~~  181 (224)
                      ++.+.+...
T Consensus       163 ~~~l~~~~~  171 (189)
T PTZ00369        163 VREIRKYLK  171 (189)
T ss_pred             HHHHHHHhh
Confidence            988865544

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.9e-33  Score=205.93  Aligned_cols=161  Identities=38%  Similarity=0.708  Sum_probs=153.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++++++++.+..|+..+......+.|+++++||.|+.+.+.++.+++++++++++.+|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999987788999999999999999999999999999999999999887


Q ss_pred             H
Q 027382          177 Y  177 (224)
Q Consensus       177 ~  177 (224)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.3e-33  Score=209.65  Aligned_cols=161  Identities=24%  Similarity=0.487  Sum_probs=143.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888876555 35677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcCC
Q 027382           95 YDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMETSAL  160 (224)
Q Consensus        95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  160 (224)
                      ||++++++++.+ ..|+..+.+..+ +.|+++|+||.|+.+            .+.++.++++++++++++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789998887654 799999999999954            245888999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027382          161 EATN-VETAFLTVLTEIY  177 (224)
Q Consensus       161 ~~~~-v~~~~~~i~~~i~  177 (224)
                      +|+| ++++|..++...+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.8e-33  Score=204.99  Aligned_cols=163  Identities=71%  Similarity=1.132  Sum_probs=149.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||++++.++..+..|+..+.+....+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998887766799999999999987677788889999998899999999999999999999998


Q ss_pred             HHH
Q 027382          174 TEI  176 (224)
Q Consensus       174 ~~i  176 (224)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3.3e-33  Score=205.51  Aligned_cols=162  Identities=33%  Similarity=0.642  Sum_probs=148.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888999888888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      |++++++++.+..|+..+.+...     .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998877653     4699999999999976566778888889998899999999999999999999


Q ss_pred             HHHHHHH
Q 027382          171 TVLTEIY  177 (224)
Q Consensus       171 ~i~~~i~  177 (224)
                      ++++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=6.8e-33  Score=204.31  Aligned_cols=166  Identities=52%  Similarity=0.928  Sum_probs=151.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ++.+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            56799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|||+++++++..+..|+..+.+...++.|+++|+||.|+.+...+..++++.++...+++++++|+++++|++++|..+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887665689999999999997666778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          173 LTEIYR  178 (224)
Q Consensus       173 ~~~i~~  178 (224)
                      .+.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            887754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4.2e-33  Score=208.89  Aligned_cols=166  Identities=28%  Similarity=0.459  Sum_probs=141.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+|+|++|||||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999887887776655543 34444 6788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 027382           95 YDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSL----RAVPTEDAQEFAQRENL-FFMETSALEATNVETA  168 (224)
Q Consensus        95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  168 (224)
                      ||++++++++.+.. |+..+.... .+.|+++|+||.|+...    +.+..+++++++..+++ +++++||++|.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999964 887776543 47999999999998543    24667889999999998 8999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 027382          169 FLTVLTEIYRIISKK  183 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~  183 (224)
                      |..+++.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999998887655444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.8e-33  Score=209.12  Aligned_cols=161  Identities=27%  Similarity=0.509  Sum_probs=141.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|+.|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888877554 34456788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcCC
Q 027382           95 YDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQREN-LFFMETSAL  160 (224)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~  160 (224)
                      ||++++++++.+. .|+..+.+.. .++|+++|+||.|+.+.            +.+..+++++++++++ .+|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 5887776544 47999999999999653            2356778999999998 589999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTEIY  177 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i~  177 (224)
                      +|.|++++|..+++.+.
T Consensus       161 ~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         161 NQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-32  Score=207.55  Aligned_cols=164  Identities=37%  Similarity=0.613  Sum_probs=144.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988864 5777877777777788888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL----RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      ||++++++++.+..|+..+.... .+.|+++|+||+|+.+.    +.+..+++.+++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887653 37999999999998532    34556778888888899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          171 TVLTEIYRII  180 (224)
Q Consensus       171 ~i~~~i~~~~  180 (224)
                      .+.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9998887544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=8.1e-33  Score=206.17  Aligned_cols=162  Identities=28%  Similarity=0.531  Sum_probs=142.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|+.|||||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999988888788888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL-----RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      |++++++++.+..|+..+.+......| ++|+||+|+...     .....++++++++..+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988876555566 678999998421     11224567788888899999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          171 TVLTEIYR  178 (224)
Q Consensus       171 ~i~~~i~~  178 (224)
                      ++...+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.5e-32  Score=200.69  Aligned_cols=162  Identities=49%  Similarity=0.844  Sum_probs=146.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887788887777777778788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+. .++++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998876556899999999999987677778889999998886 68999999999999999998


Q ss_pred             HHH
Q 027382          173 LTE  175 (224)
Q Consensus       173 ~~~  175 (224)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.3e-32  Score=199.98  Aligned_cols=160  Identities=54%  Similarity=0.873  Sum_probs=146.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888787787777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |+++++++..+..|+..+......+.|+++++||.|+...+.+..+++..+++..++.++++|++++.|+.++|.++...
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877666789999999999998767778889999999999999999999999999999998864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.6e-32  Score=201.05  Aligned_cols=160  Identities=33%  Similarity=0.553  Sum_probs=141.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 344556677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...+++.++.+++++||++|.|+.++|.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 57999999999999766667777888888888899999999999999999999986


Q ss_pred             HH
Q 027382          175 EI  176 (224)
Q Consensus       175 ~i  176 (224)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.6e-32  Score=203.51  Aligned_cols=159  Identities=25%  Similarity=0.456  Sum_probs=139.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.|+.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888888765554 4456778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcCC
Q 027382           95 YDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQREN-LFFMETSAL  160 (224)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~  160 (224)
                      ||++++++++.+. .|+..+.... .++|+++|+||.|+.+.            +.+..+++++++++.+ ..|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 4888887654 47999999999998543            4567788899998887 689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTE  175 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~  175 (224)
                      +|.|++++|+.++..
T Consensus       159 tg~~v~~~f~~~~~~  173 (175)
T cd01874         159 TQKGLKNVFDEAILA  173 (175)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.6e-32  Score=209.10  Aligned_cols=164  Identities=30%  Similarity=0.536  Sum_probs=146.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            77899999999999999999999999988888999888888777777788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|||++++++++.+..|+..+.+.. .+.|+++|+||+|+.. +.+..+++ ++++..+++|+++||++|.|+.++|.++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999988765 4799999999999964 33445555 7788888999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          173 LTEIYRI  179 (224)
Q Consensus       173 ~~~i~~~  179 (224)
                      +..+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9888644

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.2e-32  Score=200.75  Aligned_cols=160  Identities=31%  Similarity=0.544  Sum_probs=141.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998888777777766544 356677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++++++.+.+|+..+.+.. ..+.|+++++||+|+.+...+..+++.++++..+++++++||++|.|++++|.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999998887643 357999999999999876667777888899888999999999999999999999987


Q ss_pred             HH
Q 027382          175 EI  176 (224)
Q Consensus       175 ~i  176 (224)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.6e-32  Score=198.34  Aligned_cols=163  Identities=59%  Similarity=0.940  Sum_probs=148.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888788888888887778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++++++.+..|+..+......+.|+++++||+|+.....+..+.++++++.++++++++|++++.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887665689999999999997666777888999999999999999999999999999999987


Q ss_pred             HHH
Q 027382          176 IYR  178 (224)
Q Consensus       176 i~~  178 (224)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=8.6e-32  Score=198.70  Aligned_cols=162  Identities=35%  Similarity=0.641  Sum_probs=143.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988899998888877778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      +++++++..+..|+..+.+.. +...|+++|+||.|+.+...  ...+++..++.+++.+++++||++|.|++++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999998876543 34678999999999965433  345667788888889999999999999999999999


Q ss_pred             HHHHH
Q 027382          174 TEIYR  178 (224)
Q Consensus       174 ~~i~~  178 (224)
                      ..+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            87754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=6.3e-32  Score=197.79  Aligned_cols=158  Identities=35%  Similarity=0.642  Sum_probs=142.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID--HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +||+++|.+|+|||||++++.++.+...+.++.+.++....+.+.  +..+.+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888777766666666  778999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||++++++++.+..|+..+.... .++|+++|+||.|+.....+..+++.++++..+++++++|+++|.|++++|.++.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998887654 3799999999999977677788889999999999999999999999999999886


Q ss_pred             H
Q 027382          174 T  174 (224)
Q Consensus       174 ~  174 (224)
                      .
T Consensus       160 ~  160 (162)
T cd04106         160 E  160 (162)
T ss_pred             H
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-32  Score=184.00  Aligned_cols=179  Identities=49%  Similarity=0.842  Sum_probs=169.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ++.+.+|-+++|+-|+|||.|++.+....+...-.+++|..+....+.+.+..+.+++||+.|+++++...+.+++.+-+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            46688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      .++|||++.+.++..+..|+...+...+++..+++++||.|++..+.+..+++++|+.++++.|.++|+++|.|+++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCcCc
Q 027382          171 TVLTEIYRIISKKSLTAND  189 (224)
Q Consensus       171 ~i~~~i~~~~~~~~~~~~~  189 (224)
                      .....+++..+......+-
T Consensus       167 e~akkiyqniqdgsldlna  185 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGSLDLNA  185 (215)
T ss_pred             HHHHHHHHhhhcCcccccc
Confidence            9999999988887655543

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.2e-31  Score=197.94  Aligned_cols=163  Identities=39%  Similarity=0.653  Sum_probs=144.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..+||+++|++|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35679999999999999999999999998887888878777777788889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE  166 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  166 (224)
                      ++|||++++++++.+..|+..+.+..    ..++|+++++||+|+. .+.+..+++++++.+++. +++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999988776543    2468999999999996 356778889999998884 79999999999999


Q ss_pred             HHHHHHHHH
Q 027382          167 TAFLTVLTE  175 (224)
Q Consensus       167 ~~~~~i~~~  175 (224)
                      ++|..+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.3e-31  Score=197.86  Aligned_cols=162  Identities=41%  Similarity=0.761  Sum_probs=145.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhHhcCCCEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-AVTSAYYRGAVGAML   93 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~vi~   93 (224)
                      .+||+++|++|||||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999998887888888888887888888889999999999999886 578889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE---ATNVETAF  169 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~  169 (224)
                      |||+++++++..+..|+..+.... ..++|+++|+||+|+...+.+..+++.++++..+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887654 35799999999999987777888889999999999999999999   89999999


Q ss_pred             HHHHHHH
Q 027382          170 LTVLTEI  176 (224)
Q Consensus       170 ~~i~~~i  176 (224)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9988655

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.2e-31  Score=195.10  Aligned_cols=162  Identities=51%  Similarity=0.854  Sum_probs=147.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998777778878778778888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      +|+++++++..+..|+..+........|+++++||+|+...+....++...++...+++++++|+++|.|+.++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776568999999999999766677788899999999999999999999999999999987


Q ss_pred             HH
Q 027382          175 EI  176 (224)
Q Consensus       175 ~i  176 (224)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            65

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.2e-31  Score=197.21  Aligned_cols=160  Identities=33%  Similarity=0.603  Sum_probs=140.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887778888887777777777788899999999999999888999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |+++++++..+..|+..+.+... +.|+++|+||+|+.. .... .+..++++..+++++++||++|.|++++|++++..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 799999999999963 3333 34556777778899999999999999999999988


Q ss_pred             HHH
Q 027382          176 IYR  178 (224)
Q Consensus       176 i~~  178 (224)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.1e-31  Score=198.94  Aligned_cols=158  Identities=28%  Similarity=0.474  Sum_probs=138.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            69999999999999999999999988888888653 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE  161 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  161 (224)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++++++. +|+++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5888777654 47999999999999542            24778889999999985 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTE  175 (224)
Q Consensus       162 ~~~v~~~~~~i~~~  175 (224)
                      |.|++++|+.++..
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.7e-31  Score=195.46  Aligned_cols=160  Identities=32%  Similarity=0.578  Sum_probs=139.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777666777667777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++.+++.+..|+..+.+.. .+.|+++|+||+|+...   ...+...++...+++++++||++|.|++++|+.++..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887654 36899999999998531   2345567777788999999999999999999999987


Q ss_pred             HHHH
Q 027382          176 IYRI  179 (224)
Q Consensus       176 i~~~  179 (224)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2e-31  Score=194.98  Aligned_cols=160  Identities=41%  Similarity=0.763  Sum_probs=145.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888788888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++++++.+..|+..+......+.|+++++||+|+........++...+++..+++++++|++++.|++++|.++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876655579999999999996656677888899998889999999999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.3e-31  Score=196.54  Aligned_cols=161  Identities=39%  Similarity=0.627  Sum_probs=140.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888777777654 334456667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999887765443 47899999999999776667778888899999999999999999999999999987


Q ss_pred             HHH
Q 027382          175 EIY  177 (224)
Q Consensus       175 ~i~  177 (224)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.2e-31  Score=196.64  Aligned_cols=161  Identities=30%  Similarity=0.514  Sum_probs=141.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|.+|+|||||++++..+.+...+.++.+ .+....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988877777754 45556777788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++++++.+..|+..+.+... .+.|+++|+||+|+.+...+...+...++...+++++++||++|.|+.++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888876543 5799999999999976566667778888888888999999999999999999988


Q ss_pred             HHH
Q 027382          174 TEI  176 (224)
Q Consensus       174 ~~i  176 (224)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.4e-31  Score=196.81  Aligned_cols=158  Identities=31%  Similarity=0.466  Sum_probs=138.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.++.+...+.++.+.++ ...+.++...+.+.+||+||++.+..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777765443 344556778899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |++++++++.+..|+..+.+...   .+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766432   579999999999997666777778888888888999999999999999999998


Q ss_pred             HH
Q 027382          173 LT  174 (224)
Q Consensus       173 ~~  174 (224)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            74

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.8e-31  Score=194.69  Aligned_cols=161  Identities=34%  Similarity=0.535  Sum_probs=140.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|.+|+|||||++++++..+...+.++.+.. ......+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4899999999999999999999988776666765533 344566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++++++.+..|+..+.+.. ..+.|+++++||+|+.....+..++..++++..+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35789999999999977666777788899998889999999999999999999998


Q ss_pred             HHH
Q 027382          174 TEI  176 (224)
Q Consensus       174 ~~i  176 (224)
                      ..+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.1e-30  Score=199.40  Aligned_cols=168  Identities=43%  Similarity=0.707  Sum_probs=145.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +....+||+|+|.+|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            455679999999999999999999998876 4566777777777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           91 AMLVYDMTKRQSFDHMAR-WLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +++|||++++++++.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++..++++|+++||+++.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999976 555554332 246899999999999776777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          169 FLTVLTEIYRI  179 (224)
Q Consensus       169 ~~~i~~~i~~~  179 (224)
                      |.++...+.+.
T Consensus       169 ~~~l~~~~~~~  179 (211)
T PLN03118        169 FEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHhh
Confidence            99999888664

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.8e-31  Score=193.38  Aligned_cols=159  Identities=35%  Similarity=0.609  Sum_probs=138.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999988777777765443 455667788888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++++++.+..|+..+.+... .+.|+++|+||+|+.+ +.....++.++++..+++++++||++|.|++++|.++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 5789999999999965 455677888888888999999999999999999999886


Q ss_pred             HH
Q 027382          175 EI  176 (224)
Q Consensus       175 ~i  176 (224)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-33  Score=194.32  Aligned_cols=179  Identities=36%  Similarity=0.631  Sum_probs=162.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC---------CeEEEEEEEeCCChhhhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID---------HKTVKAQIWDTAGQERYRAVT   81 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~G~~~~~~~~   81 (224)
                      .+++.||.+.+|++|+|||||+.++..+.+......|+|+++..+.+-++         +..+.+++|||+|+++++++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            56788999999999999999999999999999999999999988877653         345889999999999999999


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      ..+++.|-+++++||+++..||-+++.|+..++.+.- .+.-+++++||+|+++.+.++.+++.+++.++++||+++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            9999999999999999999999999999999987663 466699999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCcCc
Q 027382          161 EATNVETAFLTVLTEIYRIISKKSLTAND  189 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i~~~~~~~~~~~~~  189 (224)
                      +|.|+.+..+.+++.+++++.+-.-+++-
T Consensus       165 tg~Nv~kave~LldlvM~Rie~~v~~s~~  193 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQCVEKSEI  193 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999988776544443

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.6e-31  Score=199.49  Aligned_cols=159  Identities=31%  Similarity=0.528  Sum_probs=137.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7999999999999999999999988888888665543 455667788999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 027382           97 MTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQREN-LFFMETSALEA  162 (224)
Q Consensus        97 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~~  162 (224)
                      ++++++++.+. .|+..+.... .+.|+++|+||+|+.+.+            .+..++..+++...+ ++|+++||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999886 5888887654 379999999999996533            345667788888877 68999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIY  177 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~  177 (224)
                      .|++++|.++.+.+.
T Consensus       160 ~~v~e~f~~l~~~~~  174 (189)
T cd04134         160 RGVNEAFTEAARVAL  174 (189)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998775

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.1e-30  Score=190.96  Aligned_cols=161  Identities=40%  Similarity=0.709  Sum_probs=143.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|+|||||++++++..+...+.++.+.......+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766666666666666777778889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++++++.+..|+..+......++|+++++||+|+...+.+..+++.+++...+.+++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988887766679999999999998766777788888888899999999999999999999999876


Q ss_pred             H
Q 027382          176 I  176 (224)
Q Consensus       176 i  176 (224)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.7e-31  Score=199.04  Aligned_cols=164  Identities=20%  Similarity=0.263  Sum_probs=136.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYRG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~   87 (224)
                      +||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+        .......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999988888888776666666677888899999999995432        1123345789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEAT  163 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  163 (224)
                      +|++|+|||++++++++.+..|+..+.+..   ..++|+++|+||+|+...+.+..+++++++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998877654   3579999999999997666667777777765 468999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYRI  179 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~  179 (224)
                      |++++|..++..++..
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999877643

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.5e-31  Score=198.05  Aligned_cols=156  Identities=29%  Similarity=0.552  Sum_probs=139.8

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh
Q 027382           21 IGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR  100 (224)
Q Consensus        21 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~  100 (224)
                      +|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889988888888888888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          101 QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       101 ~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      .++..+..|+..+.+.. .++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|+.++|.+++..+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 4799999999999864 3444443 467888899999999999999999999999888654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.3e-30  Score=191.30  Aligned_cols=160  Identities=34%  Similarity=0.596  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +||+++|++|||||||++++.+.  .+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667788888877776666664 57799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...+...+.+.+....+++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887664 468999999999997766677777778888888999999999999999999999


Q ss_pred             HHHH
Q 027382          173 LTEI  176 (224)
Q Consensus       173 ~~~i  176 (224)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=5.7e-31  Score=194.19  Aligned_cols=163  Identities=21%  Similarity=0.216  Sum_probs=141.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ++++||+++|.+|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            57899999999999999999999999988 78888888777777777888888999999999999988999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFL  170 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~  170 (224)
                      ++|||++++++++.+..|+..+...  .+.|+++|+||+|+.+.......+.+++++.+++ .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999998988766432  3699999999999965454444556788888887 479999999999999999


Q ss_pred             HHHHHHH
Q 027382          171 TVLTEIY  177 (224)
Q Consensus       171 ~i~~~i~  177 (224)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.3e-30  Score=189.32  Aligned_cols=159  Identities=50%  Similarity=0.859  Sum_probs=142.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788787777777777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++.+++.+..|+..+.+... .+.|+++++||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998877653 6799999999999973 445677888999999999999999999999999999876


Q ss_pred             H
Q 027382          175 E  175 (224)
Q Consensus       175 ~  175 (224)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            4

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=4.8e-33  Score=187.77  Aligned_cols=169  Identities=43%  Similarity=0.728  Sum_probs=154.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382           19 VLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM   97 (224)
Q Consensus        19 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~   97 (224)
                      +++|++++|||.|+-++..+.+- .....++|+++..+.+++++..+.+++|||.|++++++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999999887765 45678889999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382           98 TKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus        98 ~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ++..||++.+.|+..+.+.....+.+.+++||+|+..++.+..++.+++++.+++||+++||++|.|++-.|..|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988778889999999999888999999999999999999999999999999999999998887


Q ss_pred             HHHhcccCCc
Q 027382          178 RIISKKSLTA  187 (224)
Q Consensus       178 ~~~~~~~~~~  187 (224)
                      +....-.+..
T Consensus       161 k~~~~~~~~~  170 (192)
T KOG0083|consen  161 KLKMGAPPEG  170 (192)
T ss_pred             HhccCCCCCC
Confidence            7655544433

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=8.4e-31  Score=194.12  Aligned_cols=158  Identities=29%  Similarity=0.497  Sum_probs=137.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM   97 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~   97 (224)
                      |+|+|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999999888777775444 345566788889999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382           98 TKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALEAT  163 (224)
Q Consensus        98 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  163 (224)
                      +++++++.+. .|+..+.... .+.|+++|+||+|+...            ..+..+++.++++..++ .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 4888887654 47999999999999642            23677888899999986 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIY  177 (224)
Q Consensus       164 ~v~~~~~~i~~~i~  177 (224)
                      |++++|..+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=5e-30  Score=189.03  Aligned_cols=165  Identities=43%  Similarity=0.788  Sum_probs=145.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+++|++|||||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999998887777777777777777777888889999999999999999989999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+......++|+++++||+|+.+.+.+..+..+.+.+....+++++|+++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998887665567999999999999766777777778888877888999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      +...+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=3.6e-30  Score=190.23  Aligned_cols=164  Identities=44%  Similarity=0.720  Sum_probs=144.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777788777777777778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFL  170 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~  170 (224)
                      |++++++++.+..|...+.....    .+.|+++|+||+|+...+....++.+.+++..+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888876654432    379999999999997556667788888888887 7899999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          171 TVLTEIYRI  179 (224)
Q Consensus       171 ~i~~~i~~~  179 (224)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999888765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1.3e-30  Score=195.96  Aligned_cols=157  Identities=23%  Similarity=0.394  Sum_probs=128.6

Q ss_pred             eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccCCcce-eeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027382           15 VFKVVLIGDSAVGKSQLLA-RFARNE-----FSVDSKATIGV-EFQTKT--------LSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      .+||+++|+.|||||||+. ++.++.     +...+.||++. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555443     34556777642 322222        24678899999999999875  3


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS-------------------LRAVP  139 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~  139 (224)
                      ....+++++|++|+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 5988887655 3789999999999864                   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382          140 TEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      .+++++++++++++|++|||++|.|++++|..+++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            89999999999999999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=2.7e-30  Score=200.65  Aligned_cols=160  Identities=25%  Similarity=0.444  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||+++++++.+...+.++.+ ++....+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998877878765 555566778888999999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhc---------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 027382           96 DMTKRQSFDHMARWLDELRGH---------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNV  165 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  165 (224)
                      |++++++++.+..|+..+.+.         ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887653         224799999999999976667778888888764 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          166 ETAFLTVLTEI  176 (224)
Q Consensus       166 ~~~~~~i~~~i  176 (224)
                      +++|.+|+...
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=3e-30  Score=191.05  Aligned_cols=157  Identities=28%  Similarity=0.518  Sum_probs=136.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988877777774 4555566778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMETSALE  161 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  161 (224)
                      |++++++++.+. .|+..+.... .+.|+++++||.|+..            .+.+..+++.+++++.+. +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 5888777543 3699999999999853            356778889999999987 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLT  174 (224)
Q Consensus       162 ~~~v~~~~~~i~~  174 (224)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00154 Rab Rab family

Probab=99.97  E-value=6e-30  Score=186.00  Aligned_cols=158  Identities=56%  Similarity=0.928  Sum_probs=144.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||++++.+..+...+.++.+.++........+..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |+++++++..+..|+..+........|+++++||+|+........+++++++...+.+++++|++++.|++++|.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999998887656799999999999974566778889999999899999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.7e-30  Score=190.87  Aligned_cols=160  Identities=33%  Similarity=0.502  Sum_probs=136.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCCCEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vi~v~   95 (224)
                      ||+++|++|||||||+++++.+.+...+.++.+.. ......+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            58999999999999999999887766666664333 345566788889999999999885 3455778899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA-TNVETAFLTV  172 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~i  172 (224)
                      |++++++++.+..|+..+.+..  ..+.|+++|+||+|+...+.+..+++..+++..+.+|+++|++++ .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  357999999999999766777788889999999999999999999 5999999999


Q ss_pred             HHHHH
Q 027382          173 LTEIY  177 (224)
Q Consensus       173 ~~~i~  177 (224)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            87664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=5.2e-30  Score=196.59  Aligned_cols=163  Identities=26%  Similarity=0.355  Sum_probs=139.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc-CCCEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR-GAVGAML   93 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~vi~   93 (224)
                      +||+++|++|||||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||+||++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988776 5666665556777778888889999999999987  233455666 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++.+++.+..|+..+.+... .+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876542 579999999999997767777788888998889999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          173 LTEIYRII  180 (224)
Q Consensus       173 ~~~i~~~~  180 (224)
                      +..+....
T Consensus       159 ~~~~~~~~  166 (221)
T cd04148         159 VRQIRLRR  166 (221)
T ss_pred             HHHHHhhh
Confidence            98876433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=6.1e-30  Score=188.54  Aligned_cols=161  Identities=32%  Similarity=0.524  Sum_probs=141.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999998877777776544 3566677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |++++++++.+..|...+.+.. ..+.|+++++||.|+.+.+....++...+++..+ ++++++||+++.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887643 3579999999999997767777788888888887 7899999999999999999998


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=3.8e-30  Score=187.59  Aligned_cols=153  Identities=20%  Similarity=0.337  Sum_probs=129.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|+.|||||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998876665554 3333 45677888889999999999864     34678899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLG--SLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |++++++++.+..|+..+..... .+.|+++|+||.|+.  ..+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999998877653 578999999999984  34677888888999876 489999999999999999999


Q ss_pred             HHHH
Q 027382          172 VLTE  175 (224)
Q Consensus       172 i~~~  175 (224)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=9.6e-30  Score=188.43  Aligned_cols=159  Identities=27%  Similarity=0.462  Sum_probs=136.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777777654 333445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE  161 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  161 (224)
                      |++++++++.+. .|+..+... ..+.|+++++||+|+.+.            +.++.+++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 577777655 458999999999998542            35677888999998886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEI  176 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i  176 (224)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=3.9e-29  Score=183.16  Aligned_cols=161  Identities=37%  Similarity=0.584  Sum_probs=140.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||++++....+...+.++.+.. ......+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877777765433 3455567888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |++++.++..+..|+..+.+... .+.|+++|+||+|+.+.......+...++..++++++++|+++|.|++++|+.+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 57999999999999764556677788888888899999999999999999999987


Q ss_pred             HHH
Q 027382          175 EIY  177 (224)
Q Consensus       175 ~i~  177 (224)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=5.2e-29  Score=181.69  Aligned_cols=158  Identities=35%  Similarity=0.585  Sum_probs=140.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||++++++..+...+.++.+ +.........+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999887777777655 5555666677778999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ++++++++.+..|+..+.+... ...|+++++||+|+........+++.+++...+.+++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877654 579999999999998766677888999999988999999999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.9e-29  Score=186.24  Aligned_cols=159  Identities=19%  Similarity=0.353  Sum_probs=126.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..+||+++|.++||||||++++..+.+. .+.+|.+.+..  .  ++...+.+++||+||++.++.+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44589999999999999999999877664 45677665543  2  3345688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-----LFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  166 (224)
                      +|||++++++++.+..++..+.... ..+.|+++++||.|+++.  ...+++.+......     ..++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999999888777665432 247999999999999753  34445444433222     246689999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYR  178 (224)
Q Consensus       167 ~~~~~i~~~i~~  178 (224)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=5.6e-29  Score=184.55  Aligned_cols=167  Identities=22%  Similarity=0.385  Sum_probs=127.8

Q ss_pred             CCCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382            1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus         1 ~~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      |.+..+.+..  +..+||+++|.+|||||||++++..+.+. .+.+|.+..+..  ..  ...+.+.+||+||++.+..+
T Consensus         1 ~~~~~~~~~~--~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~   73 (175)
T smart00177        1 MGKLFSKLFG--NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPL   73 (175)
T ss_pred             CchhhhhhcC--CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHH
Confidence            4455443433  33589999999999999999999877663 466776655432  22  35688999999999999999


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeE
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFF  154 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~  154 (224)
                      +..+++++|++|+|||++++++++.+..|+..+.+.. ..+.|+++|+||.|+.+.  ...+++.+....     ..+.+
T Consensus        74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~  151 (175)
T smart00177       74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYI  151 (175)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEE
Confidence            9999999999999999999999999998887765432 247899999999999642  233444433322     12347


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +++||++|.|+.++|++|.+.+
T Consensus       152 ~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      152 QPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987664

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=2.4e-28  Score=181.94  Aligned_cols=164  Identities=34%  Similarity=0.515  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      .||+++|.+|+|||||++++.+..+...+.++.+..+ .....+.+..+.+.+||+||++.+...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887666666654433 345566777889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      |+++.++++.+..|+..+.+.. ..+.|+++++||+|+...+.+..++...+++..+.+++++|++++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999887776654 357899999999999766666777788888888899999999999999999999998


Q ss_pred             HHHHHH
Q 027382          175 EIYRII  180 (224)
Q Consensus       175 ~i~~~~  180 (224)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            876443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=4.2e-29  Score=184.02  Aligned_cols=154  Identities=22%  Similarity=0.401  Sum_probs=124.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|||||||+++|..+.+. .+.++.+.++..  +  ....+.+.+||+||++.+..++..+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999877664 456666655432  2  2356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET  167 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~  167 (224)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++++++..     ...+++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999999988876665433 25789999999999864  3456777776532     224689999999999999


Q ss_pred             HHHHHHH
Q 027382          168 AFLTVLT  174 (224)
Q Consensus       168 ~~~~i~~  174 (224)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.3e-28  Score=183.89  Aligned_cols=166  Identities=19%  Similarity=0.353  Sum_probs=132.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      .+||+++|++|||||||++++..+.+.. +.++.+.+.....+.. ++..+.+.+||+||++.+..++..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            5899999999999999999999887654 3566666665555444 4467899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEcCCCCCCHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------ENLFFMETSALEATNVE  166 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~v~  166 (224)
                      |||+++++++..+..|+..+.... ..+.|+++++||+|+.+  ....+++..+...      .+.+++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999998888887766543 24799999999999863  2344555555431      12468899999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 027382          167 TAFLTVLTEIYRIISKK  183 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~~  183 (224)
                      ++|++|++.+.+..+..
T Consensus       160 ~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         160 EGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999998886655443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.1e-29  Score=186.38  Aligned_cols=153  Identities=18%  Similarity=0.310  Sum_probs=126.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      .|+++|++|||||||++++.+..+...+.++.+...    ..+++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999887777778876543    2345567899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEcCCC------CCCHH
Q 027382           97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT----EDAQEFAQRENLFFMETSALE------ATNVE  166 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~  166 (224)
                      .+++.++..+..|+..+.... .++|+++|+||.|+...+.+..    .++..++++.+++++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999888776543 4799999999999976543321    124556666778899998888      99999


Q ss_pred             HHHHHHHH
Q 027382          167 TAFLTVLT  174 (224)
Q Consensus       167 ~~~~~i~~  174 (224)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.1e-29  Score=185.39  Aligned_cols=160  Identities=23%  Similarity=0.392  Sum_probs=124.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|||||||++++..+.+.. +.+|.+.++.  .+  ....+.+.+||+||++.+..++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998776643 5667665543  22  2356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET  167 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~  167 (224)
                      |||+++++++..+..++..+... ...+.|+++|+||.|+.+  .....++......     ..+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999999988877666432 224689999999999864  2233343332221     123567999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRII  180 (224)
Q Consensus       168 ~~~~i~~~i~~~~  180 (224)
                      +|++|.+.+.+.+
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998887654

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=9.8e-29  Score=184.89  Aligned_cols=164  Identities=35%  Similarity=0.534  Sum_probs=152.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|.+|+|||+|..++.+..+...|.|+.+ +.+.+.+.+++..+.+.++||+|++++..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999976 7777888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      ||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++..++++|+++||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999988855443 568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          173 LTEIYR  178 (224)
Q Consensus       173 ~~~i~~  178 (224)
                      ++.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            988866

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1e-28  Score=182.14  Aligned_cols=155  Identities=21%  Similarity=0.407  Sum_probs=126.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|.+|||||||++++.+..+. .+.+|.+....  .  +....+.+.+||+||++.+...+..+++.+|+++||||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999988664 36666655443  2  33356889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN------LFFMETSALEATNVETAF  169 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~  169 (224)
                      ++++++++.+..|+..+.+... .+.|+++++||.|+.+  .+..+++++++...+      +.++++||++|.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999999888765432 4689999999999964  356677777664322      258899999999999999


Q ss_pred             HHHHHHHHH
Q 027382          170 LTVLTEIYR  178 (224)
Q Consensus       170 ~~i~~~i~~  178 (224)
                      ++|.+.+..
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999876644

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=3.1e-28  Score=184.03  Aligned_cols=160  Identities=28%  Similarity=0.425  Sum_probs=133.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||++++++..+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666643 4455566677778899999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQ-RENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ++++++++.+..|+..+.+... .+.|+++|+||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888776554 5799999999999965 34455555554443 4567899999999999999999999


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=4.6e-28  Score=179.56  Aligned_cols=159  Identities=28%  Similarity=0.485  Sum_probs=133.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      .||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999888778787665443 45567788899999999999999888888999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE  161 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  161 (224)
                      |++++++++.+. .|+..+.+.. .+.|+++++||.|+.+.            ..+...+.+++++..+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998886 4777776543 37899999999998542            23445677888888774 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEI  176 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i  176 (224)
                      |.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999988653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=2.9e-28  Score=177.98  Aligned_cols=152  Identities=20%  Similarity=0.391  Sum_probs=118.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|.+|||||||++++..+.+. .+.|+.+....  .+.  ...+.+.+||+||++.+..++..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 46677665543  222  35688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAF  169 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      |++++++++.+..|+..+... .....|+++++||.|+.+.  ....++.+...     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998877666432 2246899999999999642  22333332221     123457899999999999999


Q ss_pred             HHHHH
Q 027382          170 LTVLT  174 (224)
Q Consensus       170 ~~i~~  174 (224)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            98863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=8.2e-28  Score=177.42  Aligned_cols=157  Identities=29%  Similarity=0.533  Sum_probs=132.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.+..+...+.++.. ..........+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988766666643 444455667788999999999999988888888899999999999


Q ss_pred             eCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382           96 DMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLR-----------AVPTEDAQEFAQRENL-FFMETSALEA  162 (224)
Q Consensus        96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~  162 (224)
                      |+++++++..... |+..+..... +.|+++|+||+|+.+..           .+..++..+++..++. +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999887755 7777665543 79999999999986543           2356778888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027382          163 TNVETAFLTVLT  174 (224)
Q Consensus       163 ~~v~~~~~~i~~  174 (224)
                      .|+.++|+.+++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999998874

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=1.1e-27  Score=179.47  Aligned_cols=160  Identities=29%  Similarity=0.512  Sum_probs=134.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      .||+|+|++|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999988877666666544433 35566778889999999999888877777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS----------LRAVPTEDAQEFAQRENL-FFMETSALEAT  163 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  163 (224)
                      |++++++++.+. .|+..+....+ +.|+++|+||+|+.+          .+.+..++...+++..+. +|+++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999997 58888876554 699999999999843          234556788889999885 79999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIY  177 (224)
Q Consensus       164 ~v~~~~~~i~~~i~  177 (224)
                      |++++|+++...++
T Consensus       160 ~v~~~f~~l~~~~~  173 (187)
T cd04129         160 GVDDVFEAATRAAL  173 (187)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999997663

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=5.3e-28  Score=179.05  Aligned_cols=157  Identities=21%  Similarity=0.338  Sum_probs=125.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..++|+++|++|||||||++++.+... ..+.++.+...  ..+.++  .+.+.+||+||++.++..+..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            445678999999999999999999998754 34556655333  333343  5789999999999999899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCC
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATN  164 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~  164 (224)
                      +++|||++++.++.....|+..+... ...+.|+++|+||+|+.+.  ...+++.++.+.     .+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999999888888776543 2357999999999999643  245566666532     356899999999999


Q ss_pred             HHHHHHHHHH
Q 027382          165 VETAFLTVLT  174 (224)
Q Consensus       165 v~~~~~~i~~  174 (224)
                      ++++|++++.
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=5.2e-30  Score=181.44  Aligned_cols=178  Identities=29%  Similarity=0.514  Sum_probs=166.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ...++..||++++|..++||||+|++++-+-+...|..++|.++....+.+...++.+.+||++|++++..+...|+++|
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      .+.++||+.+|..||+...+|++.+....+ ++|.++|-||+|+.+...+...+++.++++.+..++.+|++...|+..+
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            999999999999999999999999988776 7999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCc
Q 027382          169 FLTVLTEIYRIISKKSLTA  187 (224)
Q Consensus       169 ~~~i~~~i~~~~~~~~~~~  187 (224)
                      |..+++.+.+++.+.....
T Consensus       173 F~YLaeK~~q~~kq~~~~~  191 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQSLNAN  191 (246)
T ss_pred             HHHHHHHHHHHHHHHhhhc
Confidence            9999999999887744333

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.5e-27  Score=179.71  Aligned_cols=147  Identities=25%  Similarity=0.403  Sum_probs=125.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-----HKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +||+++|+.|||||||++++.++.+...+.+|++.++....+.++     +..+.+.+||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877776666663     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-------------------CCCCcEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-------------------DKNIVIMLIGNKCDLGSLRAVPTED----AQEFA  147 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ilv~nK~D~~~~~~~~~~~----~~~~~  147 (224)
                      +|+|||++++++++.+..|+..+.+..                   ..++|+++|+||.|+.+++.+..+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886531                   2469999999999997665554442    44677


Q ss_pred             HHcCCeEEEEcCCCC
Q 027382          148 QRENLFFMETSALEA  162 (224)
Q Consensus       148 ~~~~~~~~~~s~~~~  162 (224)
                      .+.+++.++.+++++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            889999888887754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=4.4e-27  Score=180.02  Aligned_cols=165  Identities=29%  Similarity=0.534  Sum_probs=143.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+...+.+.+||++|++.+...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            45567999999999999999999999888888889998888888777778889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +++|||+++..++..+..|+..+.+.. .++|+++++||+|+.+ +....+ ...++...++.++++|+++|.|+++.|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887654 4799999999999864 333333 3467777888999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          171 TVLTEIYR  178 (224)
Q Consensus       171 ~i~~~i~~  178 (224)
                      ++.+.+..
T Consensus       162 ~ia~~l~~  169 (215)
T PTZ00132        162 WLARRLTN  169 (215)
T ss_pred             HHHHHHhh
Confidence            99987754

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.1e-27  Score=174.67  Aligned_cols=159  Identities=27%  Similarity=0.362  Sum_probs=123.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.++.+...+.++ ... ......+.+..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998886554332 222 2233445677889999999999888777888889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHH
Q 027382           96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVP--TEDAQEFAQREN--LFFMETSALEATNVETAFL  170 (224)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~  170 (224)
                      |++++++++.+. .|+..+..... +.|+++|+||+|+.+.....  .+++..+....+  .+++++||+++.|++++|.
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 58777776543 79999999999996544321  233334444332  3799999999999999999


Q ss_pred             HHHHHHH
Q 027382          171 TVLTEIY  177 (224)
Q Consensus       171 ~i~~~i~  177 (224)
                      .+...+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.2e-27  Score=172.74  Aligned_cols=152  Identities=18%  Similarity=0.342  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +|+++|++|||||||+++|.+... ...+.++.+.+...    +....+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44566776654332    2245688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVET  167 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~  167 (224)
                      |++++.++..+..|+..+.+..   ..++|+++|+||+|+.+..  ...++.+...     ....+++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887775532   2479999999999996432  2333333222     1224589999999999999


Q ss_pred             HHHHHHH
Q 027382          168 AFLTVLT  174 (224)
Q Consensus       168 ~~~~i~~  174 (224)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=4.3e-27  Score=174.32  Aligned_cols=153  Identities=24%  Similarity=0.394  Sum_probs=120.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .++|+++|++|+|||||++++.++.+.. +.++.+.++..  ..  ...+.+.+||+||++.+...+..+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5799999999999999999999877654 45665554432  22  2468899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVETA  168 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +|+++++++.....++..+.+.. ..+.|+++++||+|+.+  ....+++.+..     +..+++++++||++|.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            99999999988887776665433 24699999999999864  23344433322     223457899999999999999


Q ss_pred             HHHHHH
Q 027382          169 FLTVLT  174 (224)
Q Consensus       169 ~~~i~~  174 (224)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=2.6e-27  Score=174.36  Aligned_cols=151  Identities=20%  Similarity=0.320  Sum_probs=120.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      +|+++|.+|||||||++++.+. +...+.++.+....  .+.  ...+.+.+||+||+..++.++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 55667777665432  333  356889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHH------HHHHHHcC--CeEEEEcCCCC-----
Q 027382           97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDA------QEFAQREN--LFFMETSALEA-----  162 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~-----  162 (224)
                      ++++.+++.+..|+..+.+... .+.|+++|+||.|+++.+.  ..++      .+++++.+  ..++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999988876532 5799999999999975432  2222      23333333  45788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 027382          163 -TNVETAFLTVLT  174 (224)
Q Consensus       163 -~~v~~~~~~i~~  174 (224)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=9.4e-27  Score=172.44  Aligned_cols=158  Identities=27%  Similarity=0.450  Sum_probs=129.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..++|+++|..|||||||++++..+... ...||.|.....  +.+  ..+.+.+||.+|+..++..|..++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee--CcEEEEEEeccccccccccceeecccccee
Confidence            378899999999999999999999976543 356666655443  333  557889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc------CCeEEEEcCCCCCC
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE------NLFFMETSALEATN  164 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~  164 (224)
                      |||+|.++.+.+.+....+..+.... ..+.|+++++||.|+++  ....+++.......      .+.++.+|+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            99999999999999988887776543 25799999999999874  45667777655432      34588999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=6.9e-27  Score=174.69  Aligned_cols=164  Identities=18%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382            4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA   83 (224)
Q Consensus         4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   83 (224)
                      ++. |...+...++|+++|.+|||||||++++.+..+. .+.++.+.+..  .+.+  ..+.+.+||+||+..+...+..
T Consensus         7 ~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~   80 (184)
T smart00178        7 ILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKD   80 (184)
T ss_pred             HHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHH
Confidence            344 3444455699999999999999999999987654 33445443332  2223  4578999999999999999999


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc------------
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE------------  150 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~------------  150 (224)
                      ++.++|++++|+|+++++++.....++..+.+.. ..+.|+++|+||+|++.  .++.+++.+.....            
T Consensus        81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCc
Confidence            9999999999999999999988888877665432 24789999999999863  45566666544211            


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          151 NLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       151 ~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ...++++||+++.|+++++++|...
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            2348999999999999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.5e-26  Score=170.19  Aligned_cols=152  Identities=24%  Similarity=0.415  Sum_probs=118.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF------SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +|+++|++|||||||+++|.+...      ...+.++.+....  .+.+  ....+.+||+||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      1233444444443  2233  36789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEcCCCC
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-------ENLFFMETSALEA  162 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  162 (224)
                      +++|+|+++++++.....|+..+.+.. ..+.|+++++||+|+.+  ....+++.++...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999989998888887776543 25799999999999864  3345555555443       2357999999999


Q ss_pred             CCHHHHHHHHHH
Q 027382          163 TNVETAFLTVLT  174 (224)
Q Consensus       163 ~~v~~~~~~i~~  174 (224)
                      .|++++|++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=175.21  Aligned_cols=166  Identities=30%  Similarity=0.493  Sum_probs=148.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ...+|++|+|+.++|||+|+..+..+.++..|.||+- +-+...+.++ +..+.+.+|||.|+++|..+++..++.+|.+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999965 6666778884 9999999999999999999888899999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      +++|++.++++++++.. |+..+..+++ ++|+++|++|.||.+.            ..+..+++.+.+++.|+ .|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999765 9999998884 8999999999999642            36788899999999995 69999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ||++..|+.++|+..+...+...
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999998876544

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=2.6e-26  Score=172.44  Aligned_cols=157  Identities=21%  Similarity=0.319  Sum_probs=125.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+++|++|||||||++++.+..+. .+.++.+.+.  ..+.+  ..+.+.+||+||+..+...+..+++.+|++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            345789999999999999999999987763 4555554433  23333  347889999999999988899999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc----------------CCeE
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE----------------NLFF  154 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~  154 (224)
                      ++|+|+++.++++....|+..+.+... .+.|+++++||+|+..  .+..++++.+...+                ...+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            999999999999888888877765433 5699999999999863  45667777766532                2358


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTE  175 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ++|||++|.|+.++|.++.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.7e-26  Score=168.73  Aligned_cols=152  Identities=24%  Similarity=0.427  Sum_probs=118.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      +|+++|++|||||||++++.+..+.. +.++.+.+..  .+.. ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988753 3566554433  2333 345789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH------HHcCCeEEEEcCCCCCCHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA------QRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+.  ....++....      ...+++++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999999998888877765432 257999999999998642  2233333222      2234568999999999999999


Q ss_pred             HHHHH
Q 027382          170 LTVLT  174 (224)
Q Consensus       170 ~~i~~  174 (224)
                      ++|..
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98863

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1e-25  Score=166.78  Aligned_cols=142  Identities=39%  Similarity=0.722  Sum_probs=127.8

Q ss_pred             CCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 027382           38 NEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA  117 (224)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~  117 (224)
                      +.+...+.+|.|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++++++.+..|+..+.+..
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999999988888888999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          118 DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       118 ~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ..+.|+++|+||+|+.+.+.+..+++..++..++..|+++||++|.|++++|.+|+..+.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999976677788889999999999999999999999999999999887553

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.2e-26  Score=167.79  Aligned_cols=151  Identities=23%  Similarity=0.396  Sum_probs=120.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|.+|||||||++++.+... ..+.++.+.+...  ..+  ..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999873 4455555544432  222  46789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +++++++.....|+..+.... ..+.|+++++||+|+....  ..++..+....     ...+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999988887766543 3579999999999986533  34444444332     345799999999999999999


Q ss_pred             HHHH
Q 027382          171 TVLT  174 (224)
Q Consensus       171 ~i~~  174 (224)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=5e-26  Score=165.96  Aligned_cols=151  Identities=23%  Similarity=0.363  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++++|||||++++..+.+. .+.++.+.+..  .  +++..+.+++||+||++.+..++..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999877654 34555554443  2  23356789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHH
Q 027382           97 MTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      ++++.++.....++..+.+ ....+.|+++|+||+|+.+..  ...++.+...     ..+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888777666554433 222479999999999986422  2333322221     1234699999999999999999


Q ss_pred             HHHH
Q 027382          171 TVLT  174 (224)
Q Consensus       171 ~i~~  174 (224)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=1.7e-25  Score=156.31  Aligned_cols=164  Identities=19%  Similarity=0.329  Sum_probs=133.4

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ++..++.++|+++|..|+||||++++|.+... ....|+.|..+.+    +....+++.+||.+|+...+..|+.||..+
T Consensus        10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ikt----l~~~~~~L~iwDvGGq~~lr~~W~nYfest   84 (185)
T KOG0073|consen   10 QKLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKT----LEYKGYTLNIWDVGGQKTLRSYWKNYFEST   84 (185)
T ss_pred             HHhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEE----EEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence            34466799999999999999999999998663 4445555544444    345889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEEcCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTED------AQEFAQRENLFFMETSALE  161 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~  161 (224)
                      |++|||+|.+|+..+++....+..+.. ..-...|+++++||.|++.  .++.++      ++++++.++.+++.||+.+
T Consensus        85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t  162 (185)
T KOG0073|consen   85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT  162 (185)
T ss_pred             CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence            999999999999999888877765543 2235689999999999973  233333      4456677888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~~  179 (224)
                      |+++.+.|+|+++.+.++
T Consensus       163 ge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  163 GEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999999998774

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=177.47  Aligned_cols=142  Identities=24%  Similarity=0.489  Sum_probs=122.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-------------HKTVKAQIWDTAGQERY   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~   77 (224)
                      +....+||+|+|+.|||||||+++|.++.+...+.+|+|.++....+.++             +..+.+.|||++|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45577999999999999999999999999888888998888877766664             24688999999999999


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC------------CCCcEEEEEeCCCCCCCC---C---CC
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD------------KNIVIMLIGNKCDLGSLR---A---VP  139 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~D~~~~~---~---~~  139 (224)
                      ..++..+++++|++|+|||+++..+++.+..|+..+.....            .++|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999986531            358999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCC
Q 027382          140 TEDAQEFAQRENL  152 (224)
Q Consensus       140 ~~~~~~~~~~~~~  152 (224)
                      .+++++|++++++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7889999999885

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=6.1e-25  Score=163.35  Aligned_cols=154  Identities=23%  Similarity=0.268  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCccC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE-------FSVDSKA------TIGVEFQTKTLSI-----DHKTVKAQIWDTAGQERYR   78 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~~~   78 (224)
                      +|+++|++++|||||+++|++..       +...+.+      +.|.++......+     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1112222      2234444443333     5677889999999999999


Q ss_pred             hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---EE
Q 027382           79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF---FM  155 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  155 (224)
                      ..+..+++.+|++|+|+|+++..+......|.....    .++|+++|+||+|+.+..  ......++++..+++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            999999999999999999998766665555543332    368999999999986422  223345666666653   89


Q ss_pred             EEcCCCCCCHHHHHHHHHHHH
Q 027382          156 ETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       156 ~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++||++|.|++++|+++...+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999988654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=5.8e-25  Score=159.75  Aligned_cols=151  Identities=25%  Similarity=0.417  Sum_probs=120.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM   97 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~   97 (224)
                      |+++|++|||||||+++|.+..+...+.++.+.....  +..  ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999998888888877655543  223  337899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           98 TKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        98 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++++++.....|+..+.... ..+.|+++|+||+|+.+...  ..+..+..     ....++++++|++++.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99999988888777665432 25789999999999864322  22222222     112357899999999999999999


Q ss_pred             HHH
Q 027382          172 VLT  174 (224)
Q Consensus       172 i~~  174 (224)
                      +.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=2e-24  Score=158.97  Aligned_cols=155  Identities=19%  Similarity=0.214  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHhHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR---------AVTSAYYRG   87 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~   87 (224)
                      +|+++|.+|+|||||+++|.+........+.  .+............+.+.+|||||.....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            6899999999999999999998764332221  11212222233456889999999973210         111112234


Q ss_pred             CCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           88 AVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      +|++++|+|+++..+  ++....|+..+.+.. .+.|+++|+||+|+.....+  .+..++....+.+++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence            689999999998654  355667777776543 37899999999999653332  2255566656678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          166 ETAFLTVLTEI  176 (224)
Q Consensus       166 ~~~~~~i~~~i  176 (224)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=9.4e-24  Score=153.00  Aligned_cols=158  Identities=34%  Similarity=0.496  Sum_probs=125.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|.+|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.+++++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987777777777777666666766668999999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           95 YDMTKR-QSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|.... .++.... .|+..+.+....+.|+++++||.|+.... ........+......+++++||+++.|+.++|+.|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 6665555 56666655544478999999999996533 22333334444445679999999999999999876


Q ss_pred             H
Q 027382          173 L  173 (224)
Q Consensus       173 ~  173 (224)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=8.2e-24  Score=156.45  Aligned_cols=155  Identities=21%  Similarity=0.330  Sum_probs=116.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|++|||||||++++.+.... .+.++.|.+..  .+...  ...+.+||+||+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            45899999999999999999999987653 34455554433  23333  467899999999988888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-----LFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  166 (224)
                      +|+|+++..++.....++..+.... ..++|+++++||+|+.+..  ..+++.+......     .+++++||++|.|++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            9999999888888877766654432 3479999999999986422  2233332222111     147899999999999


Q ss_pred             HHHHHHHH
Q 027382          167 TAFLTVLT  174 (224)
Q Consensus       167 ~~~~~i~~  174 (224)
                      ++|++|.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=3.2e-23  Score=159.02  Aligned_cols=170  Identities=39%  Similarity=0.559  Sum_probs=139.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|+.|||||||+++|....+...+.++.+..+...........+.+.+|||+|+++++.++..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            39999999999999999999999999999999888777777776666689999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEEc
Q 027382           95 YDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRE---NLFFMETS  158 (224)
Q Consensus        95 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s  158 (224)
                      +|.++ ..+.+....|+..+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 5556666779988888776679999999999997643            22222222222222   23389999


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHhccc
Q 027382          159 AL--EATNVETAFLTVLTEIYRIISKKS  184 (224)
Q Consensus       159 ~~--~~~~v~~~~~~i~~~i~~~~~~~~  184 (224)
                      ++  ++.++.++|..+...+........
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            99  999999999999999876655443

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=4.3e-24  Score=162.17  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=112.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTS   82 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~   82 (224)
                      .+..++|+|+|++|||||||++++.+........+..+.......+.+.+ ...+.+|||||...         +...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            45678999999999999999999999764333222222222333333332 23789999999621         22221 


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      ..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+...     ...+....+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LEERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HHHHhhcCCCceEEEEcCCC
Confidence            2367899999999999988887777777777665445789999999999864322     11444555678999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTE  175 (224)
Q Consensus       163 ~~v~~~~~~i~~~  175 (224)
                      .|+++++++|...
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01898 Obg Obg subfamily

Probab=99.92  E-value=4.8e-24  Score=157.16  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHh---HhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----RYRAVTSA---YYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~---~~~~~d   89 (224)
                      +|+++|.+|||||||+++|.+........+..........+... ....+.+|||||..    ....+...   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            68999999999999999999765422221211111111112222 22489999999953    11122223   345699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 027382           90 GAMLVYDMTKR-QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNV  165 (224)
Q Consensus        90 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  165 (224)
                      ++++|+|++++ .+++.+..|.+.+.+...  ...|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888776542  36899999999999654433 3445556655 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          166 ETAFLTVLTE  175 (224)
Q Consensus       166 ~~~~~~i~~~  175 (224)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.5e-23  Score=169.06  Aligned_cols=162  Identities=13%  Similarity=0.038  Sum_probs=117.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA   88 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~   88 (224)
                      -.|+|+|.|+||||||+++|.+........+..+.....-.+.+ .....+.+||+||..+       ....+...+..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~-~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV-DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe-CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            45999999999999999999986644333333222222222222 1345689999999532       222334456689


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      +++++|+|+++.++++....|...+.....  .+.|+++|+||+|+.+.........+.++...+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999987788888889888876543  468999999999997544433344555666667889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYR  178 (224)
Q Consensus       167 ~~~~~i~~~i~~  178 (224)
                      ++|+++.+.+.+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=9.8e-24  Score=154.44  Aligned_cols=151  Identities=17%  Similarity=0.143  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC---CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE---FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +.|+++|.+|||||||+++|.+..   +...+.+..+.+.......+.. ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999743   2222222223333333333331 468999999999988777777889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEcCCCCCC
Q 027382           93 LVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQR---ENLFFMETSALEATN  164 (224)
Q Consensus        93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~  164 (224)
                      +|+|+++   +++.+    .+..+... . ..|+++++||+|+.+...  ...+++.++...   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~----~~~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTRE----HLEILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHH----HHHHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   33332    22222221 1 248999999999964321  112344454444   457899999999999


Q ss_pred             HHHHHHHHH
Q 027382          165 VETAFLTVL  173 (224)
Q Consensus       165 v~~~~~~i~  173 (224)
                      ++++|+.+.
T Consensus       154 v~~l~~~l~  162 (164)
T cd04171         154 IEELKEYLD  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999998875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=3.8e-24  Score=153.25  Aligned_cols=134  Identities=21%  Similarity=0.209  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhHhHhcCCCEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-----RYRAVTSAYYRGAVGA   91 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~v   91 (224)
                      ||+++|++|||||||+++|.+....  +.++.+       +.+.     -.+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999999987642  223321       1121     1689999972     233333 357899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFL  170 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~  170 (224)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++++++++..+. +++++||++|.|++++|.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887654 3343322      248999999999964 34456777888888776 799999999999999998


Q ss_pred             HHH
Q 027382          171 TVL  173 (224)
Q Consensus       171 ~i~  173 (224)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.4e-24  Score=152.52  Aligned_cols=160  Identities=20%  Similarity=0.374  Sum_probs=134.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .....+|+++|-.++||||++.+|..++.... .||+|..+....+    ..+.+++||.+|++.++.+|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            44678999999999999999999998887555 7887877666443    589999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-----eEEEEcCCCCCCH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-----FFMETSALEATNV  165 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~v  165 (224)
                      |||+|.+|++.+.++++.+..+..+.. .+.|+++++||.|+++  ..+..++.+....+.+     .+..++|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999999998877766654 6899999999999985  4455566555544333     4677899999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYR  178 (224)
Q Consensus       166 ~~~~~~i~~~i~~  178 (224)
                      .+.++++...+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=2e-22  Score=144.73  Aligned_cols=153  Identities=46%  Similarity=0.751  Sum_probs=120.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382           20 LIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        20 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                      ++|++|+|||||++++.+... ...+.++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44454553 5666666666677889999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           99 KRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTED-AQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        99 ~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ++.+......|. ...........|+++++||+|+.......... ...+......+++++|++++.|+.++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988888872 22333334579999999999986544332222 3455555678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.7e-23  Score=156.62  Aligned_cols=149  Identities=15%  Similarity=0.189  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR--NEFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT   81 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   81 (224)
                      -+|+++|++++|||||+++|++  +.+...+            ..+.+.++......+.+..+.+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  3433322            1234555655555666677899999999999999999


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHH-------cCCe
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQR-------ENLF  153 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~  153 (224)
                      ..+++.+|++++|||+++. .......++..+..   .++|+++++||+|+.+... ...+++.++...       .+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            9999999999999999873 22333344444333   2689999999999964322 113344555432       3678


Q ss_pred             EEEEcCCCCCCHHHH
Q 027382          154 FMETSALEATNVETA  168 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~  168 (224)
                      ++++||++|.|+.+.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999877443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=158.77  Aligned_cols=153  Identities=24%  Similarity=0.256  Sum_probs=106.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-----------QERYRAV   80 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~   80 (224)
                      +...++|+++|.+|||||||+++|.+..+...+.+  +.++....+.+.    .+.+|||||           ++.++..
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            44678999999999999999999998876544444  344444443332    589999999           5666666


Q ss_pred             hHhHhc----CCCEEEEEEeCCChhhH-H---------HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027382           81 TSAYYR----GAVGAMLVYDMTKRQSF-D---------HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF  146 (224)
Q Consensus        81 ~~~~~~----~~d~vi~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~  146 (224)
                      +..++.    .++++++|+|.++.... +         ....++..+..   .++|+++|+||+|+.+..   .+...++
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHH
Confidence            666654    45788889988653221 0         11122222322   369999999999986422   3455666


Q ss_pred             HHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          147 AQRENL---------FFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       147 ~~~~~~---------~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ....++         +++++||++| |++++|++|.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            666554         4799999999 99999999987764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.1e-22  Score=147.92  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=108.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHhc--CCCEE
Q 027382           20 LIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYYR--GAVGA   91 (224)
Q Consensus        20 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~v   91 (224)
                      |+|.+|+|||||++++.+......+.+..+.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765444444444455445555543  5789999999876543      3455564  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|+|+++++...   .++..+.+   .+.|+++++||+|+.+...+. .+.+.+....+.+++++|++++.|++++++.
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999865433   33333333   268999999999997544433 3356777778889999999999999999998


Q ss_pred             HHHH
Q 027382          172 VLTE  175 (224)
Q Consensus       172 i~~~  175 (224)
                      +...
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.90  E-value=1.2e-22  Score=149.30  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      .|+++|.+|+|||||+++|....+...+.++...+.....+... .....+.+|||||++.+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887665443332223222222222 24678999999999999888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH------HcCCeEEEEcCCCCCCHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-TEDAQEFAQ------RENLFFMETSALEATNVETA  168 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~s~~~~~~v~~~  168 (224)
                      |+++..... ....+..+..   .+.|+++|+||+|+.+..... ......+..      ....+++++|+++|.|+.++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743222 1222222332   368999999999986422100 111222211      11357999999999999999


Q ss_pred             HHHHHHHH
Q 027382          169 FLTVLTEI  176 (224)
Q Consensus       169 ~~~i~~~i  176 (224)
                      ++++.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-22  Score=138.13  Aligned_cols=156  Identities=22%  Similarity=0.452  Sum_probs=131.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..++|+++|-.++||||++..|.-+.. ....||+|..+..+    .+..+.+.+||.+|++..+..|++|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            378999999999999999999987654 55667777666653    4588899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-----eEEEEcCCCCCCHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-----FFMETSALEATNVET  167 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~v~~  167 (224)
                      |+|.++.+.+++++..+..+.++.+ .+.|+++.+||.|+++  ....+++..+.+-..+     .+.++++.+|.|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999999999988777766654 6899999999999985  4567888877765433     367899999999999


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      -|.++.+..
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999988653

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=6.2e-22  Score=137.00  Aligned_cols=176  Identities=24%  Similarity=0.359  Sum_probs=142.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--CccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhHhHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--DSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERY-RAVTSAYYR   86 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-~~~~~~~~~   86 (224)
                      +--...||+|+|..++|||+++++|+.++..+  .+.+|+. +++...+.- .+..-.++++||.|.... ..+-.+|+.
T Consensus         5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q   83 (198)
T KOG3883|consen    5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ   83 (198)
T ss_pred             hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence            44567899999999999999999999876543  3455543 333343333 455668999999996655 677889999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      -+|++++||+..+++||+.+..+-..+.++.. +.+|+++++||.|+.+.+++..+.+..|++...+.++++++.+...+
T Consensus        84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            99999999999999999988776666665543 67999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCc
Q 027382          166 ETAFLTVLTEIYRIISKKSLTA  187 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~~~~~~~  187 (224)
                      -+.|..+...+.....+.....
T Consensus       164 ~epf~~l~~rl~~pqskS~Fpl  185 (198)
T KOG3883|consen  164 YEPFTYLASRLHQPQSKSTFPL  185 (198)
T ss_pred             hhHHHHHHHhccCCcccccCcc
Confidence            9999999888766555544433

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=4.7e-22  Score=161.56  Aligned_cols=155  Identities=18%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhHh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTSA   83 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~   83 (224)
                      +..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+ ...+.+|||+|.         +.+...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            4568999999999999999999999775433333323344445555532 347899999996         2222222 3


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      .+.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+..     +..... ....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCCC
Confidence            47899999999999998887777666666665443478999999999986421     222221 222468999999999


Q ss_pred             CHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTE  175 (224)
Q Consensus       164 ~v~~~~~~i~~~  175 (224)
                      |++++++.|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=4.8e-22  Score=160.17  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=112.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA   88 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~   88 (224)
                      ..|+++|.++||||||+++|.+........+..+.....-.+.+. ....+.+||+||..+       ....+...+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            469999999999999999999876433333322222222223332 236789999999632       222233345679


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           89 VGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        89 d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      +++++|+|+++.   ++++.+..|...+.....  .+.|+++|+||+|+.+... ..+..+++.+..+.+++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999986   677777777776665432  4689999999999965322 2334455666677889999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEI  176 (224)
Q Consensus       164 ~v~~~~~~i~~~i  176 (224)
                      |+++++.++.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999988654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=1e-22  Score=145.94  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=101.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hhhhhhHhHh--cC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RYRAVTSAYY--RG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~~   87 (224)
                      |+|+++|.|+||||||+|+|.+........|.  .|.......+......+.++|+||--      ........++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            68999999999999999999999866555554  44444443343344789999999921      1123334443  68


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      .|+++.|+|++..+.--   .....+.+.   ++|+++++||+|....+.... +.+.+.+..++|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998743222   222333333   699999999999865443322 47788888899999999999999999


Q ss_pred             HHHHH
Q 027382          168 AFLTV  172 (224)
Q Consensus       168 ~~~~i  172 (224)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=2.7e-22  Score=158.36  Aligned_cols=153  Identities=18%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYRGA   88 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~~   88 (224)
                      +|+++|.+|||||||+|+|.+......+..+ +++..............+.+|||||....        .......+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~-~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKA-QTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCC-CcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998764322221 12222111112223357899999995432        11234567899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  167 (224)
                      |++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+.. ........+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999866554  344444443   268999999999986321 112334455555554 799999999999999


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      +++.+.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999887655

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=2.1e-22  Score=139.90  Aligned_cols=114  Identities=32%  Similarity=0.603  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      ||+|+|++|||||||+++|.+....  ..+.+..+.+.......+......+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22333445556655666777887899999999998988888889999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCC
Q 027382           95 YDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                      ||+++++++..+.++   +..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999988655   55554433 4699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.89  E-value=9e-23  Score=140.17  Aligned_cols=154  Identities=23%  Similarity=0.411  Sum_probs=127.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+.+.++|-.++|||||+|....+.+...-.|+.|.....    ++...+.+.+||.||+..++++|..|.+.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            45778999999999999999999888877777887765554    56788999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEcCCCCCC
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--------LFFMETSALEATN  164 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~  164 (224)
                      |+|+++++.++..+..+..+..... ..+|+++.+||.|+++  ..+..+   +..+.+        +-.|.+|+++..|
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~---li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIA---LIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHH---HHHHhCccccccceEEEEEEEEcCCcc
Confidence            9999999999998887776665443 6899999999999974  333333   333333        3478999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      ++.+..|+++.-
T Consensus       170 id~~~~Wli~hs  181 (186)
T KOG0075|consen  170 IDITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=9.4e-22  Score=164.12  Aligned_cols=156  Identities=20%  Similarity=0.222  Sum_probs=114.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTS   82 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~   82 (224)
                      .+..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.++  ...+.+|||||...+..        ...
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            456789999999999999999999987542 2223332334444444454  45678999999754322        124


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      .+++.+|++++|||++++.+.+..  |+..+..   .+.|+++|+||+|+...      +...+++..+.+++++|+++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            578899999999999988776654  6555542   36899999999998642      23455666778899999998 


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027382          163 TNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~~~~  181 (224)
                      .|++++|+.+.+.+.+...
T Consensus       346 ~gI~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFYS  364 (442)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            6999999999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.6e-21  Score=168.06  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=117.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhh
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE-------FSVDSKA------TIGVEFQTKTLSI-----DHKTVKAQIWDTAGQER   76 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~   76 (224)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..|.++....+.+     ++..+.+.+|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998742       1122221      2356666554444     35568999999999999


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL---F  153 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  153 (224)
                      +...+..++..+|++|+|+|+++..+......|...+.    .++|+++|+||+|+....  ......++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666654443    268999999999986422  12233455555555   3


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++++||++|.|++++|+.+.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999988765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=1.2e-21  Score=158.97  Aligned_cols=155  Identities=26%  Similarity=0.329  Sum_probs=105.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhh-------hhHhH
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRA-------VTSAY   84 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~-------~~~~~   84 (224)
                      ...++|+++|.+|||||||+|+|.+..+.... +..+.+.......+......+.+|||||... +..       .....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            45679999999999999999999988764221 1112222222112223445789999999742 211       11234


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALE  161 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~  161 (224)
                      +..+|++++|+|.++  ++.... .|+..+...   +.|+++|+||+|+.+.   ...++.+++...+  ..++++||++
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            789999999999765  333333 355555443   4677889999998642   2456666666554  5799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEI  176 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i  176 (224)
                      |.|++++|+++...+
T Consensus       201 g~gv~eL~~~L~~~l  215 (339)
T PRK15494        201 GKNIDGLLEYITSKA  215 (339)
T ss_pred             ccCHHHHHHHHHHhC
Confidence            999999999987765

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=1.1e-21  Score=142.30  Aligned_cols=146  Identities=19%  Similarity=0.201  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTSAYYR   86 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~   86 (224)
                      ++|+++|++|+|||||++++.+..... ...+.............  ....+.+|||||......        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 22222222333333333  356789999999644321        2335677


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++++|+|++++.+......+..      ....|+++|+||+|+.+....       .....+.+++++|++++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998777666544332      236899999999998653322       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      +++.++...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.88  E-value=3.4e-22  Score=147.97  Aligned_cols=155  Identities=20%  Similarity=0.176  Sum_probs=104.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hh---hhHhHhcCCCEEE
Q 027382           20 LIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----RA---VTSAYYRGAVGAM   92 (224)
Q Consensus        20 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~~~~~~d~vi   92 (224)
                      ++|++|||||||+++|.+........+..........+.+. ....+.+||+||....    ..   .....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999886422211111122222222222 1567899999996321    11   2234577899999


Q ss_pred             EEEeCCCh------hhHHHHHHHHHHHHhcCC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382           93 LVYDMTKR------QSFDHMARWLDELRGHAD-------KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus        93 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      +|+|++++      .++.....|...+.....       ...|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      477777777766654432       36899999999999654333222223444445677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027382          160 LEATNVETAFLTVLTE  175 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~  175 (224)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.5e-21  Score=146.05  Aligned_cols=156  Identities=19%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--------------ceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATI--------------GVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS   82 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   82 (224)
                      +|+|+|.+|+|||||+++|++...........              +.+.......+......+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999877654432211              2222222233333467899999999998888899


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH-----------
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR-----------  149 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~-----------  149 (224)
                      .+++.+|++++|+|++++.... ...++..+..   .+.|+++++||+|+......  ..+++.+..+.           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            9999999999999998755433 2334444443   36999999999998642211  12333444433           


Q ss_pred             ---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          150 ---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       150 ---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                         ...+++++|+++|.|++++|.++...+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               246799999999999999999988764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=8.6e-22  Score=148.16  Aligned_cols=158  Identities=16%  Similarity=0.099  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC----CCCCCc---c--CCcceeeEEEEEE----------ECCeEEEEEEEeCCChhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN----EFSVDS---K--ATIGVEFQTKTLS----------IDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~----~~~~~~---~--~~~~~~~~~~~~~----------~~~~~~~~~l~D~~G~~~   76 (224)
                      ++|+++|++++|||||+++|.+.    .+...+   .  .|.+.......+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    111111   1  2222222222221          113367899999999876


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHH------
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQ------  148 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~------  148 (224)
                      +..........+|++++|+|+++.........+.  +....  +.|+++++||+|+.....  ...+++++...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6444445567889999999998744333322222  11212  579999999999863221  11222322211      


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          149 -RENLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       149 -~~~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                       ..+++++++||++|.|++++++.+.+.+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13568999999999999999999887763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.5e-21  Score=142.22  Aligned_cols=141  Identities=13%  Similarity=0.131  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhHhcCCCEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----RYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~vi   92 (224)
                      +|+++|.+|+|||||+|+|.+...  ....+       ..+.+...    .+||+||..    .+.......++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT--LARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc--cCccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999886432  11111       11222222    269999962    22222234478999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--FFMETSALEATNVETAFL  170 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|+++.++..  ..|+..+.    .+.|+++++||+|+.+   ...+.+.+++.+.++  +++++||++|.|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999876542  23433321    2578999999999854   345667788888775  899999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          171 TVLTEIYRI  179 (224)
Q Consensus       171 ~i~~~i~~~  179 (224)
                      .+.+.+.+.
T Consensus       141 ~l~~~~~~~  149 (158)
T PRK15467        141 YLASLTKQE  149 (158)
T ss_pred             HHHHhchhh
Confidence            988766443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=9.6e-22  Score=166.34  Aligned_cols=155  Identities=23%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--------RYRAVTSAYY   85 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~   85 (224)
                      ...+|+|+|.+|||||||+|+|++....... .+.|.+.......+......+.+|||||.+        .+...+..++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            4578999999999999999999987653222 222444333333333344568899999965        2344566678


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN  164 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  164 (224)
                      +.+|++|+|+|++++.+... ..+...+..   .+.|+++|+||+|+....   . +..++. ..++ .++++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~-~~~~~~-~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---A-DAAALW-SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---h-hhHHHH-hcCCCCeEEEEcCCCCC
Confidence            99999999999998655432 334444443   369999999999986421   1 222222 2333 357999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIYR  178 (224)
Q Consensus       165 v~~~~~~i~~~i~~  178 (224)
                      ++++|++++..+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999887744

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=1.1e-21  Score=142.48  Aligned_cols=146  Identities=16%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhHhcCCC
Q 027382           19 VLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTSAYYRGAV   89 (224)
Q Consensus        19 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d   89 (224)
                      +++|.+|+|||||+++|++..... ...+..+........  ......+.+|||||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEA--EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEE--EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875321 112221222222222  23346799999999776432        3456678999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETA  168 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  168 (224)
                      ++++|+|+.++.+.... .+...+.+   .+.|+++|+||+|+.+...    . .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443322 22233332   2589999999999864221    1 233334555 6899999999999999


Q ss_pred             HHHHHHH
Q 027382          169 FLTVLTE  175 (224)
Q Consensus       169 ~~~i~~~  175 (224)
                      |+++++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9998865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.9e-21  Score=164.54  Aligned_cols=161  Identities=25%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAVT   81 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   81 (224)
                      +..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++.  .+.+|||||.          +.+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            35799999999999999999999987643 233333333333444445443  5679999994          3333322


Q ss_pred             -HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHHcCCeEEEE
Q 027382           82 -SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQE-FAQRENLFFMET  157 (224)
Q Consensus        82 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~  157 (224)
                       ..+++.+|++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+....  ...++.+ +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             34678999999999999987776653 4444433   36899999999999642110  0111222 122234689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ||++|.|++++|..+...+...
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998765433

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=2.1e-21  Score=147.20  Aligned_cols=159  Identities=18%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECC---------------------------------
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDH---------------------------------   61 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------------------   61 (224)
                      ++|+++|+.|+|||||+++|.+..... ......+.+.......+..                                 
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            579999999999999999997642111 1111111121111111110                                 


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--C
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--P  139 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~  139 (224)
                      ....+.+|||||++.+...+...+..+|++++|+|++++.........+..+....  ..|+++|+||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence            12678999999999988888888899999999999987421112222223332221  2478999999998642111  1


Q ss_pred             HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          140 TEDAQEFAQRE---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .+++++++...   +.+++++||++|+|++++|+.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23344444433   56799999999999999999887644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.4e-20  Score=155.44  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQER-------YRAVTSAYYRGA   88 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~-------~~~~~~~~~~~~   88 (224)
                      .|+++|.|+||||||+++|.+........+..  +.......+... ...+.+||+||...       ....+...+..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT--Tl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT--TLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc--eeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            79999999999999999999876443333322  222222222222 46799999999532       111222335579


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           89 VGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        89 d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      +++++|+|+++.   ++++....|...+.....  .+.|+++|+||+|+.+    ..+.++++.+..+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   566777777777765433  4689999999999843    2345667777777789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYRI  179 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~  179 (224)
                      |++++++++.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998776543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=1.6e-20  Score=161.14  Aligned_cols=154  Identities=15%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      .+..+|+++|++++|||||+++|.+..+...+.+..+.+.....+.+.+. ..+.+|||||++.+..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            35678999999999999999999988776555443334444444444222 27899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCCCC
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALEAT  163 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~  163 (224)
                      +|+|+++...... .+.+.....   .++|+++++||+|+.+   ...+++.+.+...+         .+++++||++|.
T Consensus       164 LVVda~dgv~~qT-~e~i~~~~~---~~vPiIVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQT-IEAISHAKA---ANVPIIVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhH-HHHHHHHHH---cCCCEEEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            9999987322222 222222222   3689999999999864   23444444443332         469999999999


Q ss_pred             CHHHHHHHHHH
Q 027382          164 NVETAFLTVLT  174 (224)
Q Consensus       164 ~v~~~~~~i~~  174 (224)
                      |++++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=8e-21  Score=159.60  Aligned_cols=161  Identities=20%  Similarity=0.182  Sum_probs=107.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----------hh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-----------VT   81 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~   81 (224)
                      ...++|+++|.+++|||||+++|++........ ..+++.......+......+.+|||||......           ..
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            456899999999999999999999876432211 113333333333322344789999999543221           12


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-R----ENLFFME  156 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  156 (224)
                      ..+++.+|++|+|+|++++.+..... ++..+.+   .+.|+++|+||+|+.+ .....++..+... .    ..+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEE
Confidence            34688999999999999876655443 3333333   2689999999999962 1111222222222 2    2468999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      +||++|.|+.++|+++.+.+.+.
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998766543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=1.9e-20  Score=141.22  Aligned_cols=159  Identities=16%  Similarity=0.178  Sum_probs=107.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~   80 (224)
                      ..+..++|+++|.+|+|||||+++|.+..+...+.++.+.+........   ...+.+|||||.          +.+..+
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4567899999999999999999999987644444455555544333322   367999999993          344455


Q ss_pred             hHhHhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeEE
Q 027382           81 TSAYYRGA---VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQRENLFFM  155 (224)
Q Consensus        81 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  155 (224)
                      ...+++.+   +++++|+|.+++.+.... .+...+..   .+.|+++++||+|+.+....  ..+++.++......+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            55566544   678888998775433221 11222222   26889999999998542221  12234444444467899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHH
Q 027382          156 ETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       156 ~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++|++++.|++++++.+...+
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=7.3e-21  Score=141.54  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=101.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhh
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYR   78 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~   78 (224)
                      +.+....++|+++|.+|+|||||+++|.+......+.++.+.+........+.   .+.+||+||.          ..+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            34567888999999999999999999998764334444545555444343332   6899999994          2344


Q ss_pred             hhhHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--
Q 027382           79 AVTSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN--  151 (224)
Q Consensus        79 ~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~--  151 (224)
                      .+...+++   .++++++|+|++.+-+.... .++..+..   .+.|+++++||+|+.+...  ...+++++.+...+  
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            44445555   35799999999875443333 23333433   2689999999999864221  12344555555543  


Q ss_pred             CeEEEEcCCCCCCHH
Q 027382          152 LFFMETSALEATNVE  166 (224)
Q Consensus       152 ~~~~~~s~~~~~~v~  166 (224)
                      ..++++||++|+|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            479999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=3.7e-21  Score=161.35  Aligned_cols=149  Identities=19%  Similarity=0.193  Sum_probs=107.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhH
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV--------TSAY   84 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~   84 (224)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.++  ...+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987642 2233332334444444453  456899999997543221        2346


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN  164 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (224)
                      +..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+.....        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999877665444432      2368999999999996432211        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIYR  178 (224)
Q Consensus       165 v~~~~~~i~~~i~~  178 (224)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887643

>cd04163 Era Era subfamily

Probab=99.86  E-value=1.9e-20  Score=136.94  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYR   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~   86 (224)
                      ..+|+++|++|+|||||++++.+.......... ..+.......+......+.+||+||....        .......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            568999999999999999999987654332222 12222222223344578899999995432        223455688


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNV  165 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v  165 (224)
                      .+|++++|+|++++.+. ....+...+...   +.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            99999999999986211 112222333322   58999999999986422222333344444443 57999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          166 ETAFLTVLTE  175 (224)
Q Consensus       166 ~~~~~~i~~~  175 (224)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=2.1e-20  Score=137.71  Aligned_cols=154  Identities=21%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhH
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----------R-AVTS   82 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~-~~~~   82 (224)
                      +++|+++|.+|+|||||++++++..... ...+.............+  ...+.+||+||....          . ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999876432 222221222222233333  345789999995322          1 1123


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-HHc----CCeEEEE
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-QRE----NLFFMET  157 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~  157 (224)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+......+...+.. ...    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999987665433 33333332   26899999999999654322222222222 222    3579999


Q ss_pred             cCCCCCCHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLT  174 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~  174 (224)
                      |++++.|+.++++.+.+
T Consensus       156 Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         156 SALTGQGVDKLFDAIDE  172 (174)
T ss_pred             eccCCCCHHHHHHHHHH
Confidence            99999999999998765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=5.7e-21  Score=132.58  Aligned_cols=166  Identities=27%  Similarity=0.517  Sum_probs=143.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      .-.+||.++|++..|||||+-.+.++...+.+..+.|..+..+++.+.+.++.+.+||.+|++++..+.+...+++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            35689999999999999999999999998888888899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-----HHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-----TEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      |+||++.++++..+..|+...+......+| ++|++|.|+--.-...     ..+++.+++..++.++.+|+..+.|+..
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999988877665565 5679999962111111     1246678888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRI  179 (224)
Q Consensus       168 ~~~~i~~~i~~~  179 (224)
                      +|.-+...+...
T Consensus       177 IFK~vlAklFnL  188 (205)
T KOG1673|consen  177 IFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHhCC
Confidence            999888777654

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=2e-20  Score=155.37  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh------HhHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVT------SAYYR   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~------~~~~~   86 (224)
                      ..+|+++|.+|||||||+|+|.+........++.+.+.....+.+.+ ...+.+|||+|...  ....+      ...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            36899999999999999999998765543333333444444444433 22678999999632  12222      23368


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNV  165 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v  165 (224)
                      .+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+...   .....  ...+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~~--~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRIDR--DEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHHH--HhcCCCceEEEeCCCCCCH
Confidence            999999999999988777766555555544444789999999999864211   11111  123445 588999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYRI  179 (224)
Q Consensus       166 ~~~~~~i~~~i~~~  179 (224)
                      +++++++.+.+...
T Consensus       351 deL~e~I~~~l~~~  364 (426)
T PRK11058        351 PLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999887543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1.7e-20  Score=156.82  Aligned_cols=164  Identities=14%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYR   86 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~   86 (224)
                      ....|+|+|.|+||||||+++|.+........+.  +|.......+......+.+||+||...       ........+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            3457999999999999999999987654333332  222222222333446899999999421       1112233467


Q ss_pred             CCCEEEEEEeCCCh----hhHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027382           87 GAVGAMLVYDMTKR----QSFDHMARWLDELRGHA-----------DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN  151 (224)
Q Consensus        87 ~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (224)
                      .+|++|+|+|+++.    +.+..+..+...+....           ....|+++|+||+|+.+.... .+.........+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence            89999999999853    34444444443333221           136899999999999643322 223333444557


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          152 LFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       152 ~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      .+++++||+++.|+++++.+|.+.+....
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            88999999999999999999988775543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=4.5e-20  Score=160.81  Aligned_cols=157  Identities=18%  Similarity=0.219  Sum_probs=111.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEE--EEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQT--KTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      .++..+|+|+|+.++|||||+++|....+.....+..+.+...  .....++....+.+|||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3466789999999999999999999877654433332222222  22223345688999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-------HHcC--CeEEEEcCC
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-------QREN--LFFMETSAL  160 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s~~  160 (224)
                      ++|+|+|+++........ .+..+.   ..++|+++++||+|+...   ..+++.+..       ..++  ++++++||+
T Consensus       321 iaILVVDA~dGv~~QT~E-~I~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE-AINYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             EEEEEEECcCCCChhhHH-HHHHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            999999998743222222 222222   236899999999998642   233333222       2223  579999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTE  175 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~  175 (224)
                      +|.|++++|+.+...
T Consensus       394 tG~GIdeLle~I~~l  408 (742)
T CHL00189        394 QGTNIDKLLETILLL  408 (742)
T ss_pred             CCCCHHHHHHhhhhh
Confidence            999999999988765

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=3.7e-20  Score=159.55  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=112.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC---CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE---FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +.|+++|++++|||||+++|.+..   ++..+...++.+.....+..++  ..+.+||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            478999999999999999999743   3333334434444444444433  78999999999999888888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEcCCCCCCH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV--PTEDAQEFAQRE----NLFFMETSALEATNV  165 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~~~v  165 (224)
                      +|+|+++... ....+.+..+...   ++| +++++||+|+.+....  ..+++++++...    +.+++++|+++|.|+
T Consensus        79 LVVDa~~G~~-~qT~ehl~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        79 LVVDADEGVM-TQTGEHLAVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence            9999997321 1222233333322   567 9999999999653321  123455666554    468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYR  178 (224)
Q Consensus       166 ~~~~~~i~~~i~~  178 (224)
                      ++++..+...+..
T Consensus       155 ~eL~~~L~~l~~~  167 (581)
T TIGR00475       155 GELKKELKNLLES  167 (581)
T ss_pred             hhHHHHHHHHHHh
Confidence            9999988765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=3.6e-20  Score=148.07  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYR   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~   86 (224)
                      .-.|+|+|.+|||||||+|+|++......+..+ .++..............+.+|||||....        .......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~-~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCC-CcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            456999999999999999999998764333222 11222111112224478999999995322        233445678


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNV  165 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v  165 (224)
                      .+|++++|+|+++..+ ......+..+..   .+.|+++|+||+|+..........++.+....+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~-~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIG-PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCC-hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            9999999999987211 112222333332   268999999999996322222334445555444 56999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          166 ETAFLTVLTEI  176 (224)
Q Consensus       166 ~~~~~~i~~~i  176 (224)
                      +++++.+.+.+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99999988765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=5.9e-20  Score=158.58  Aligned_cols=160  Identities=20%  Similarity=0.242  Sum_probs=116.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------CCc------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-------VDS------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAG   73 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G   73 (224)
                      .+..-+++++|+.++|||||+.+|+...-.       ..+      ....|.++....+.+     ++..+.+++|||||
T Consensus         4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG   83 (600)
T PRK05433          4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG   83 (600)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence            345668999999999999999999873211       111      112355555444433     34578999999999


Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (224)
                      +..+...+..++..+|++|+|+|+++.........|.....    .++|+++|+||+|+....  ......++....++.
T Consensus        84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~  157 (600)
T PRK05433         84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGID  157 (600)
T ss_pred             cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCC
Confidence            99999999999999999999999998655555555544332    268999999999986422  122234454445553


Q ss_pred             ---EEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          154 ---FMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       154 ---~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                         ++++||++|.|+.++++++.+.+.
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               899999999999999999887653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=6.7e-21  Score=142.82  Aligned_cols=159  Identities=21%  Similarity=0.249  Sum_probs=109.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEEC--CeEEEEEEEeCCChh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSID--HKTVKAQIWDTAGQE   75 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~   75 (224)
                      ..++|+++|+.++|||||+++|+........                ....+.+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999864422111                0011233333333333  677899999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHH-HHHHHc---
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQ-EFAQRE---  150 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~-~~~~~~---  150 (224)
                      .+.......+..+|++|+|+|+.+.-.. ...+.+..+...   ++|+++++||+|+...+. ...+++. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            9988888889999999999999875333 234444444443   688999999999862110 0011222 333333   


Q ss_pred             ---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          151 ---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       151 ---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                         .++++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               24799999999999999999888765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=1.2e-19  Score=159.38  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=110.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ..+...|+|+|+.++|||||+++|....+.....+..+.+.....+.+  ....+.+|||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~--~~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET--NGGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE--CCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            457788999999999999999999887765444333223333333333  346799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEcCCCC
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-------AQREN--LFFMETSALEA  162 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~~  162 (224)
                      |+|||+++...-.. .+.+....   ..++|+++++||+|+.+.   +.+.+...       ...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT-~e~i~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQT-IEAINHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhH-HHHHHHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            99999987322221 12222222   236999999999999642   22222221       22233  67999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTE  175 (224)
Q Consensus       163 ~~v~~~~~~i~~~  175 (224)
                      .|++++|+.+...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998753

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=8.7e-20  Score=149.96  Aligned_cols=160  Identities=15%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d   89 (224)
                      .|+|+|.|+||||||+|+|.+........+..+.....-.+.. .....+.++|+||...       ........+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            6999999999999999999987654333333222222222222 2234689999999532       1122234578999


Q ss_pred             EEEEEEeCC---ChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCCC
Q 027382           90 GAMLVYDMT---KRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALEA  162 (224)
Q Consensus        90 ~vi~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  162 (224)
                      ++++|+|++   +.+.++....|+..+.....  .+.|+++|+||+|+.+...+ .+.++++....+  .+++++||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   44566767777777765432  36899999999998643222 234455555544  36899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIYR  178 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~  178 (224)
                      .|++++++.|.+.+.+
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999887754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=5e-20  Score=154.99  Aligned_cols=146  Identities=22%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSAYYR   86 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~   86 (224)
                      .+|+++|.+|||||||+|+|.+.... ....+..+.+.......+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            47999999999999999999987643 22222223333444444433  7899999999775        3334566788


Q ss_pred             CCCEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382           87 GAVGAMLVYDMTKRQSF--DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEAT  163 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  163 (224)
                      .+|++++|+|++++.+.  ..+..|+.   +.   +.|+++|+||+|+.+    ......++ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~----~~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPD----EEADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCcc----chhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            99999999999874333  22334433   22   689999999999753    12233333 34455 38999999999


Q ss_pred             CHHHHHHHHHH
Q 027382          164 NVETAFLTVLT  174 (224)
Q Consensus       164 ~v~~~~~~i~~  174 (224)
                      |++++|+.+..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999886

>COG1159 Era GTPase [General function prediction only]

Probab=99.84  E-value=9.4e-20  Score=140.55  Aligned_cols=158  Identities=20%  Similarity=0.151  Sum_probs=108.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ--------ERYRAVTSAYY   85 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~   85 (224)
                      +.-.|+++|.|++|||||+|++.+......+.... +|+.....-+.....++.++||||-        +.+.......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q-TTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc-hhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            45568999999999999999999998875554442 3333333334456889999999992        23344455667


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCC-eEEEEcCCCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENL-FFMETSALEAT  163 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~  163 (224)
                      ..+|+++||+|++.+-.- ..+..++.+++   .+.|+++++||+|....... .....++.. .... .++++||++|.
T Consensus        84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeeccccC
Confidence            899999999999863222 22334444544   25899999999998653331 122333333 3333 58999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIY  177 (224)
Q Consensus       164 ~v~~~~~~i~~~i~  177 (224)
                      |++.+.+.+...+.
T Consensus       159 n~~~L~~~i~~~Lp  172 (298)
T COG1159         159 NVDTLLEIIKEYLP  172 (298)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99988888776653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=4.4e-19  Score=127.19  Aligned_cols=157  Identities=25%  Similarity=0.399  Sum_probs=120.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------CccC----CcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------DSKA----TIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR   78 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   78 (224)
                      ..-...||+|.|+.++||||+++++.......        .+..    |+.+++....  + +.+..+++++||||+++.
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~-~~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--L-DEDTGVHLFGTPGQERFK   82 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--E-cCcceEEEecCCCcHHHH
Confidence            34567899999999999999999999866421        1111    1122222211  1 334679999999999999


Q ss_pred             hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEE
Q 027382           79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFME  156 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~  156 (224)
                      .+|..+.++++++|+++|.+.+..+ ..+..++.+....  .+|+++++||.|+.+  ..+.+++++.....  +.+.++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~  157 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIE  157 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceee
Confidence            9999999999999999999998887 5566666665443  299999999999985  45677888877766  789999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTE  175 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~  175 (224)
                      .++.++++..+.++.+...
T Consensus       158 ~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         158 IDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eecccchhHHHHHHHHHhh
Confidence            9999999999888777654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.5e-19  Score=152.09  Aligned_cols=159  Identities=23%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hh-hhh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----------YR-AVT   81 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~-~~~   81 (224)
                      ...++|+++|.+|+|||||+|+|++........ ..|.+.......+......+.+|||||...          +. ...
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            457999999999999999999999866432221 124444444444434556788999999432          11 112


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE-FAQR----ENLFFME  156 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~  156 (224)
                      ..++..+|++|+|+|++++.+.... .++..+.+   .+.|+++++||+|+.+...  ..+..+ +...    ..+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            3467899999999999987665543 33333333   2689999999999863211  122221 1111    2468999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      +||++|.|++++|+.+......
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998865543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=1.2e-19  Score=152.39  Aligned_cols=150  Identities=22%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ--------ERYRAVTSAYYRGA   88 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~~   88 (224)
                      +|+++|.+|||||||+|+|.+....... ...|.+.......+...+..+.+|||||.        +.+......+++.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            5899999999999999999987643221 12233333333333334557999999995        44556667788999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  167 (224)
                      |++++|+|+.++.+... ..+...+++   .+.|+++|+||+|+.+...    ...++ ...++ +++++||++|.|+.+
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~----~~~~~-~~lg~~~~~~vSa~~g~gv~~  150 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDA----VAAEF-YSLGFGEPIPISAEHGRGIGD  150 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccc----cHHHH-HhcCCCCeEEEeCCcCCChHH
Confidence            99999999987433322 122233333   2689999999999864332    12222 34565 699999999999999


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      +++.+...+
T Consensus       151 ll~~i~~~l  159 (429)
T TIGR03594       151 LLDAILELL  159 (429)
T ss_pred             HHHHHHHhc
Confidence            999988665

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.2e-20  Score=131.28  Aligned_cols=160  Identities=21%  Similarity=0.333  Sum_probs=123.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC------CC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE------FS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      ..+.|+++|..++|||||+.++...-      .+ ....+++|.......+    ....+.+||.+|++..+++|..|+.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHH
Confidence            45678999999999999999875421      11 2233455555444333    2567899999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH---H---cCCeEEEEcC
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ---R---ENLFFMETSA  159 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s~  159 (224)
                      .++++|+++|+++++-++.....++.+...- -.++|+++.+||.|+.+  .....+++....   .   ...++.++||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence            9999999999999999998888776665443 36899999999999874  334555655544   2   2357999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027382          160 LEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~i~~~  179 (224)
                      .+|+||.+...|++..+.+.
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999998877554

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=1.3e-19  Score=156.39  Aligned_cols=145  Identities=19%  Similarity=0.190  Sum_probs=105.4

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh------hHhHh--cCCCEEEE
Q 027382           22 GDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV------TSAYY--RGAVGAML   93 (224)
Q Consensus        22 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~vi~   93 (224)
                      |.+|||||||+|++.+........+..+.+.....+..  .+..+++||+||...+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~--~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF--QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE--CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988765555454344444444444  3456899999998766432      33333  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |+|+++.+..   ..+...+.   +.+.|+++++||+|+.+.+... .+.+++.+..+++++++||++|.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874322   22222222   2369999999999986544443 457788888999999999999999999999998


Q ss_pred             HH
Q 027382          174 TE  175 (224)
Q Consensus       174 ~~  175 (224)
                      +.
T Consensus       152 ~~  153 (591)
T TIGR00437       152 KA  153 (591)
T ss_pred             HH
Confidence            65

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-20  Score=133.69  Aligned_cols=161  Identities=31%  Similarity=0.562  Sum_probs=140.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..++++++|..|.||||++++++.+++...+.++.|.........-+...+.+..|||.|++.+..+...++=.+...|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            58999999999999999999999999999999999998887776666667999999999999999988888888889999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      +||++..-++.++.+|...+.+.++ ++|+++++||.|.....  .....-.+.++.++.|+++|++.+-|...-|.++.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            9999999999999999999988776 69999999999986422  12234456667788999999999999999999998


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      +.+.
T Consensus       166 rKl~  169 (216)
T KOG0096|consen  166 RKLT  169 (216)
T ss_pred             hhhc
Confidence            7763

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-22  Score=143.27  Aligned_cols=170  Identities=35%  Similarity=0.612  Sum_probs=145.6

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ++.+..++++|+|.-|+|||+++.+++...+...|..++|.++..+...++.. .+++++||+.|++.+..+..-+++.+
T Consensus        20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea   99 (229)
T KOG4423|consen   20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA   99 (229)
T ss_pred             chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence            34678999999999999999999999999999999999999988877766543 46889999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCe-EEEEcCCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQRENLF-FMETSALEA  162 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~s~~~~  162 (224)
                      .+.++|||++..-+++....|.+.+....    +..+|+++.+||+|...... .....+.+|++++++. ++++|+|.+
T Consensus       100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN  179 (229)
T ss_pred             cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence            99999999999999999999998876544    25688999999999864222 2235688899999975 999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIYRI  179 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~~  179 (224)
                      .++.++...+++.+.-.
T Consensus       180 kni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILVN  196 (229)
T ss_pred             cChhHHHHHHHHHHHhh
Confidence            99999999888877543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=7e-19  Score=155.24  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=115.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhH
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA----------VTSAY   84 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~   84 (224)
                      .++|+++|.+|||||||+|+|.+........  .|.++..+...+...+..+.+||+||...+..          ....+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4689999999999999999999876543333  36666666666667778899999999765432          12233


Q ss_pred             h--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           85 Y--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        85 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      +  ..+|++++|+|+++.+...   .+...+.+   .++|+++++||+|+.+.+.. ..+.+++.++.+++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            3  4899999999999854422   23333433   26999999999998754444 35678888889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEI  176 (224)
Q Consensus       163 ~~v~~~~~~i~~~i  176 (224)
                      +|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999988877543

>cd00880 Era_like Era (E

Probab=99.82  E-value=3.5e-19  Score=129.03  Aligned_cols=151  Identities=19%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhHhcCCCEE
Q 027382           20 LIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-------AVTSAYYRGAVGA   91 (224)
Q Consensus        20 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~v   91 (224)
                      ++|++|+|||||++++.+.... ....+............. .....+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL-GPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe-cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987654 222222122222222222 125689999999965443       3445678999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE---DAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      ++|+|++++....... +......   .+.|+++++||.|+.........   .........+.+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876666554 3333322   37899999999998643322111   012223334578999999999999999


Q ss_pred             HHHHHHH
Q 027382          169 FLTVLTE  175 (224)
Q Consensus       169 ~~~i~~~  175 (224)
                      ++.+.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=6.3e-19  Score=155.77  Aligned_cols=157  Identities=20%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhh-h
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAV-T   81 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~-~   81 (224)
                      ..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++.  .+.+|||||..          .+..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4689999999999999999999998743 222232233333333444443  46799999942          22222 2


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-R----ENLFFME  156 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  156 (224)
                      ...++.+|++++|+|++++.+..... ++..+.+   .+.|+++|+||+|+.+...  .+..++... .    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            34578999999999999877766654 3333333   3689999999999964221  222222222 1    1346799


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      +||++|.|++++|+.+.+.+.+
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999877654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=1.8e-19  Score=123.20  Aligned_cols=155  Identities=24%  Similarity=0.341  Sum_probs=116.8

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      .+..+.|+|+++|-.++|||||++.|.+.... .-.+|.|.....  +.. ...+.+.+||.+|+...+..|..|+.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~--v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKK--VEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEE--Eee-cCcEEEEEEecCCccccchhhhhhhhccc
Confidence            45678999999999999999999999876542 333444543333  322 45689999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEcCC
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--------LFFMETSAL  160 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~  160 (224)
                      ++|||+|.+|..-++++...+..+.+. .-..+|+++++||.|+..  +.   ..++.+.+.+        ..+-++|+.
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa---~~eeia~klnl~~lrdRswhIq~csal  162 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AA---KVEEIALKLNLAGLRDRSWHIQECSAL  162 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hc---chHHHHHhcchhhhhhceEEeeeCccc
Confidence            999999999988888887765555443 336799999999999853  22   2333333332        246688999


Q ss_pred             CCCCHHHHHHHHH
Q 027382          161 EATNVETAFLTVL  173 (224)
Q Consensus       161 ~~~~v~~~~~~i~  173 (224)
                      +++|+.+-.+++.
T Consensus       163 s~eg~~dg~~wv~  175 (185)
T KOG0074|consen  163 SLEGSTDGSDWVQ  175 (185)
T ss_pred             cccCccCcchhhh
Confidence            9999888777765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=6.9e-19  Score=155.52  Aligned_cols=155  Identities=23%  Similarity=0.165  Sum_probs=106.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSAYY   85 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~   85 (224)
                      ...+|+++|.++||||||+|+|++...... ....|.+..............+.+|||||.+.        +......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            457899999999999999999998764322 22335555544444444456789999999552        344456678


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN  164 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  164 (224)
                      ..+|++|||+|+++.-... -..|...++.   .+.|+++|+||+|+...    .....++.. .+. ..+++||++|.|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~----~~~~~~~~~-lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS----EYDAAEFWK-LGLGEPYPISAMHGRG  423 (712)
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc----hhhHHHHHH-cCCCCeEEEECCCCCC
Confidence            9999999999998632211 1234444443   37999999999998532    122233322 232 367999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIYR  178 (224)
Q Consensus       165 v~~~~~~i~~~i~~  178 (224)
                      ++++|+++++.+..
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999887643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=4.2e-19  Score=152.83  Aligned_cols=156  Identities=16%  Similarity=0.230  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382           17 KVVLIGDSAVGKSQLLARFARN--EFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS   82 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   82 (224)
                      +|+++|+.++|||||+++|+..  .+....            ....|.++......+.+..+.+.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221111            12236677776666777789999999999999999999


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCeE
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQ-------RENLFF  154 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~  154 (224)
                      .+++.+|++++|+|+++. .......|+..+...   ++|+++|+||+|+.+.+.. ...++.++..       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            999999999999999873 334455666655543   6899999999998653321 1233444442       235679


Q ss_pred             EEEcCCCCC----------CHHHHHHHHHHHH
Q 027382          155 METSALEAT----------NVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~~~~----------~v~~~~~~i~~~i  176 (224)
                      +.+||++|.          |+..+|+.+++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999996          7888888777665

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=1.7e-19  Score=146.41  Aligned_cols=150  Identities=22%  Similarity=0.171  Sum_probs=107.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYYR   86 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~   86 (224)
                      ..|+++|.|+||||||.|+|.+.......+.+ |.|+........+.+..+.++||+|-+.         ........+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            46999999999999999999998876554443 5555555545555666799999999432         2344566688


Q ss_pred             CCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382           87 GAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN  164 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (224)
                      .||++|||+|....-+  -+.+.+++   ++   .+.|+++|+||+|...    ..+...+|...--..++.+||..|.|
T Consensus        83 eADvilfvVD~~~Git~~D~~ia~~L---r~---~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          83 EADVILFVVDGREGITPADEEIAKIL---RR---SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHH---Hh---cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccC
Confidence            9999999999986322  23333333   32   2699999999999641    22334444443334699999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      +.++++.++..+
T Consensus       153 i~dLld~v~~~l  164 (444)
T COG1160         153 IGDLLDAVLELL  164 (444)
T ss_pred             HHHHHHHHHhhc
Confidence            999999988765

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.81  E-value=9.1e-19  Score=132.62  Aligned_cols=117  Identities=21%  Similarity=0.331  Sum_probs=87.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC-CEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~vi~v~   95 (224)
                      +|+++|++|||||||+++|....+...+.++ .................+.+||+||+..++..+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999988765443322 2222221111123467899999999999999999999999 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHh---cCCCCCcEEEEEeCCCCCC
Q 027382           96 DMTKR-QSFDHMARWLDELRG---HADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~  134 (224)
                      |+++. .++..+..|+..+..   .....+|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 677777666544322   1225799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.81  E-value=4e-18  Score=131.61  Aligned_cols=151  Identities=24%  Similarity=0.222  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAVTSAYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d   89 (224)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+  ....+++||+||....       ......+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999987643332222222222222333  4568999999996422       223456789999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------Hh------------
Q 027382           90 GAMLVYDMTKRQ-SFDHMARWLDEL-----------------------------------------RG------------  115 (224)
Q Consensus        90 ~vi~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~------------  115 (224)
                      ++++|+|+++++ ....+.+.+..+                                         .+            
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 344333333211                                         00            


Q ss_pred             ------------cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          116 ------------HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       116 ------------~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                                  .....+|+++|+||+|+.     ..+++..++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        001236899999999984     34556666544  3589999999999999999888654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.6e-19  Score=135.44  Aligned_cols=149  Identities=23%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCeEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHKTVKAQ   67 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   67 (224)
                      ||+++|++++|||||+++|+...-....                             ....|.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999864322110                             00024455555555556677899


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC----CHHHH
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV----PTEDA  143 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~  143 (224)
                      +|||||+..+.......++.+|++++|+|++++..-. .......+... . ..++++|+||+|+......    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            9999999888766777789999999999998743221 22222222222 1 2357889999998642211    12344


Q ss_pred             HHHHHHcCC---eEEEEcCCCCCCHHHH
Q 027382          144 QEFAQRENL---FFMETSALEATNVETA  168 (224)
Q Consensus       144 ~~~~~~~~~---~~~~~s~~~~~~v~~~  168 (224)
                      +++....+.   +++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            555566663   4899999999998743

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.8e-18  Score=148.93  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=115.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN--EFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      ...+|+++|+.++|||||+++|+..  .+...+            ..+.+.++......+.+..+.+.+|||||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4568999999999999999999973  222211            23457777777777888889999999999999999


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHH-------cC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQR-------EN  151 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  151 (224)
                      .+..+++.+|++|+|+|+++..... .+.++..+..   .++|.++++||+|+...+. ...+++.++...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998743322 3333333333   2688999999999864332 112334444322       34


Q ss_pred             CeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 027382          152 LFFMETSALEAT----------NVETAFLTVLTEI  176 (224)
Q Consensus       152 ~~~~~~s~~~~~----------~v~~~~~~i~~~i  176 (224)
                      ++++.+||++|.          ++..+|+.+++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            679999999998          4677776666554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=3.2e-19  Score=149.45  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=107.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|++++|||||+++|+...-....                             ....|++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            346799999999999999999999853221100                             012366666666667777


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA----  137 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----  137 (224)
                      .+.+.+|||||++.+.......+..+|++++|+|++++.++ .....++..+... . ..|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence            88999999999987766556667899999999999873122 1122222223222 1 246899999999964211    


Q ss_pred             CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382          138 VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL  170 (224)
Q Consensus       138 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  170 (224)
                      ...+++.+++...+     .+++++||++|.|+.+.+.
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            11234556665554     4699999999999987543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=5.2e-19  Score=148.18  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=108.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC---------------------------ccCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNE--FSVD---------------------------SKATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|+.++|||||+.+|+...  ....                           .....|.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            4567999999999999999999998621  1100                           0011255555555666677


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC---
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRA---  137 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---  137 (224)
                      .+.+.+||+||++.+.......+..+|++++|+|+++.++..  ....++..... .. ..|+++++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~-~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LG-INQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cC-CCeEEEEEEChhccCccHHHH
Confidence            789999999999988776777788999999999999864321  11122222222 22 357899999999964221   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382          138 -VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL  170 (224)
Q Consensus       138 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  170 (224)
                       ....+++++++..+     ++++++||++|.|+.+.+.
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence             11345566776655     5799999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=2.5e-18  Score=129.09  Aligned_cols=148  Identities=20%  Similarity=0.165  Sum_probs=103.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC------C--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFS------V--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      .++|+++|+.++|||||+++|++....      .        ......|.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            479999999999999999999864110      0        00112356666666667777788999999999988877


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc-----C
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQRE-----N  151 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  151 (224)
                      ....+..+|++++|+|+...-. ...+..+..+...   ++| +++++||+|+......   ..++++++....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            8888899999999999986422 2233344444433   466 7789999998532211   122455555544     3


Q ss_pred             CeEEEEcCCCCCCHH
Q 027382          152 LFFMETSALEATNVE  166 (224)
Q Consensus       152 ~~~~~~s~~~~~~v~  166 (224)
                      ++++++||++|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=2.8e-18  Score=125.72  Aligned_cols=150  Identities=17%  Similarity=0.245  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhHhHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAVTSAYYR   86 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~   86 (224)
                      .|+++|.+|+|||||++.+.+........++.+.+........+.   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555554555555555444443433   88999999932          23444444444


Q ss_pred             ---CCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 027382           87 ---GAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQ--RENLFFMET  157 (224)
Q Consensus        87 ---~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  157 (224)
                         ..+++++++|.....  ....+..|+...      +.|+++++||+|+......  .........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999997642  222333444322      4889999999998532211  1122222232  234578999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTE  175 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++.++.++++.+.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=1.8e-18  Score=143.73  Aligned_cols=165  Identities=20%  Similarity=0.186  Sum_probs=105.6

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEEEE--E------------------EC------Ce
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTL--S------------------ID------HK   62 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~--~------------------~~------~~   62 (224)
                      ++.+..++|+++|+.++|||||+.+|.+....... ....|.+......  .                  ++      ..
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            45667799999999999999999999653211110 0011222221100  0                  00      01


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PT  140 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~  140 (224)
                      ...+.+||+||++.+..........+|++++|+|++++.........+..+....  ..|+++|+||+|+.+....  ..
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHH
Confidence            3678999999999887766667778899999999996431112222222333221  2468999999999653221  12


Q ss_pred             HHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          141 EDAQEFAQRE---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       141 ~~~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++++.++...   +.+++++||++|.|++++++.|...+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            3445555432   46899999999999999999887654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=5.3e-18  Score=145.58  Aligned_cols=154  Identities=17%  Similarity=0.144  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccC----CcceeeEEEEE------------EECCeEEEEEEEeCCChhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKA----TIGVEFQTKTL------------SIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      -|+++|++++|||||+++|.+..+......    +.|.+......            .++.....+.+|||||++.+..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            489999999999999999998766432222    11221111100            00001123889999999999999


Q ss_pred             hHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC------------CHHHH--
Q 027382           81 TSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV------------PTEDA--  143 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~------------~~~~~--  143 (224)
                      +..++..+|++++|+|+++   +.+++.+.    .+..   .++|+++++||+|+.+....            ....+  
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            9999999999999999987   34433322    2222   26899999999998632100            00000  


Q ss_pred             ----------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          144 ----------QEFAQ------------RE--NLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       144 ----------~~~~~------------~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                                .++..            ..  .++++++||++|+|+++++.++.....
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                      01111            11  257999999999999999998875443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=2.8e-18  Score=139.39  Aligned_cols=168  Identities=23%  Similarity=0.230  Sum_probs=119.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hh--hhH
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---------RA--VTS   82 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~--~~~   82 (224)
                      ..++|+++|.|++|||||+|+|++..-...+.-+ |+++......+......+.++||.|-..-         .+  -..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            5799999999999999999999998765444443 78888888888778888999999992221         11  123


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----c-CCeEEEE
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR----E-NLFFMET  157 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~~~  157 (224)
                      ..+..+|.+++|+|++.+-+-+.. +....+.+.   +.++++++||+|+.+......++.++-...    . .++.+.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            446789999999999976544432 233333332   688999999999976543444444333222    2 3579999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhcccCCc
Q 027382          158 SALEATNVETAFLTVLTEIYRIISKKSLTA  187 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~  187 (224)
                      ||+++.+++++|+.+.. +++....+..++
T Consensus       332 SA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts  360 (444)
T COG1160         332 SALTGQGLDKLFEAIKE-IYECATRRISTS  360 (444)
T ss_pred             EecCCCChHHHHHHHHH-HHHHhccccCHH
Confidence            99999999999999774 444444443443

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1.7e-18  Score=143.95  Aligned_cols=162  Identities=19%  Similarity=0.164  Sum_probs=106.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEE--------------------EEEECC------eEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTK--------------------TLSIDH------KTVK   65 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~------~~~~   65 (224)
                      ...++|+++|++++|||||+++|.+....... ....+.+....                    ...++.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            35689999999999999999999753221100 00001111111                    000011      1467


Q ss_pred             EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027382           66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDA  143 (224)
Q Consensus        66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~  143 (224)
                      +.+||+||++.+...+......+|++++|+|++++.......+.+..+....  ..|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999998888888899999999999996431223333333333221  2468999999998642211  12344


Q ss_pred             HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          144 QEFAQRE---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       144 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .++....   +.+++++||++|+|++++++.|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444433   56899999999999999999887654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=4e-18  Score=119.62  Aligned_cols=134  Identities=24%  Similarity=0.268  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhHhHhcCCCEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----QERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi   92 (224)
                      ||+++|+.|||||||+++|.+...  .+..|....       +     .-.++||||    +..+.........+||.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998664  333332111       1     124599999    4445555556667999999


Q ss_pred             EEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHH
Q 027382           93 LVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFL  170 (224)
Q Consensus        93 ~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~  170 (224)
                      +|.|++++.+ +..      .+...  .+.|+|-|+||+|+.. .....+.++++.+.-|+. +|++|+.+|+|++++.+
T Consensus        69 ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   69 LLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999998543 221      11222  2589999999999973 234567788888888874 89999999999999988


Q ss_pred             HHH
Q 027382          171 TVL  173 (224)
Q Consensus       171 ~i~  173 (224)
                      .|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.79  E-value=3.2e-18  Score=139.41  Aligned_cols=157  Identities=20%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV--------TSA   83 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~   83 (224)
                      -+.-++++++|.||+|||||+|+|++........-+ |+|+......++-.++.++++||.|..+....        ...
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            456789999999999999999999998876554444 67777777777778889999999994433221        234


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      .+..||.++||+|.+.+.+-.... .+.    ....+.|+++|.||.|+......     .......+.+++.+|+++++
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGE  362 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCcc
Confidence            578999999999999852222111 111    23347899999999999753331     11111233468999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYRI  179 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~  179 (224)
                      |++.+.+.|...+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999988888776554

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.2e-17  Score=129.21  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c---cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVD-------------S---KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      +|+++|+.|+|||||+++|+...-...             +   ....+.++......+.+....+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999987421110             0   112244455555556667789999999999999888


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      +..+++.+|++++|+|+++.... ....++..+.+.   ++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            89999999999999999985433 344555555443   68999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1e-18  Score=133.91  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCeEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHKTVKAQ   67 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   67 (224)
                      +|+++|+.++|||||+.+|+...-..                             ......|++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999997531100                             0001125556656666666778999


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC--CCCC
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL--RAVP  139 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~  139 (224)
                      +||+||+..+...+...+..+|++|+|+|+++...      .......+...... . ..|+++++||+|+...  ....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G-VKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C-CCeEEEEEEccccccccccHHH
Confidence            99999998887777777889999999999998421      11222222222222 1 3679999999999632  1111


Q ss_pred             ----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382          140 ----TEDAQEFAQREN-----LFFMETSALEATNVE  166 (224)
Q Consensus       140 ----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~  166 (224)
                          .++++.+....+     .+++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                122333444443     569999999999976

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.9e-19  Score=123.44  Aligned_cols=167  Identities=20%  Similarity=0.313  Sum_probs=124.2

Q ss_pred             cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382            4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA   83 (224)
Q Consensus         4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   83 (224)
                      ++..++.+. ...+|+++|-.|+||||++.++.-.+. ....|+.|.....    +.++...+++||.+|+-..+..|+-
T Consensus         8 ~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRc   81 (182)
T KOG0072|consen    8 LFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRC   81 (182)
T ss_pred             HHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHH
Confidence            344555544 889999999999999999999876665 3445665655544    4458889999999999999999999


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeEEEE
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EF----AQRENLFFMET  157 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~~  157 (224)
                      |+.+.|++|||+|.+|.+.+.-....+-.+.+ ..-.+..+++++||.|....-  ...|+. .+    .+..-..++++
T Consensus        82 Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~t  159 (182)
T KOG0072|consen   82 YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKT  159 (182)
T ss_pred             HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEee
Confidence            99999999999999998887777665544433 222457789999999985421  122221 11    11122468999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ||.+|+|++.+++|+.+.+.+
T Consensus       160 SA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  160 SAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             ccccccCCcHHHHHHHHHHhc
Confidence            999999999999999987643

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.78  E-value=1.6e-17  Score=143.78  Aligned_cols=154  Identities=15%  Similarity=0.096  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC---CCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF---SVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      -|+++|+.++|||||+++|.+...   ......  |++.......+. .....+.+||+||++.+.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~r--GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKR--GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccC--CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            488999999999999999986432   222222  333332222221 12345899999999999877788889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV--PTEDAQEFAQREN---LFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~v~  166 (224)
                      +|+|+++.. .....+.+..+...   ++| +++|+||+|+.+....  ..+++.+++...+   .+++++|+++|.|++
T Consensus        80 LVVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            999998732 12223333333322   345 5799999998642211  1234555555544   579999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++++.|....
T Consensus       156 ~L~~~L~~~~  165 (614)
T PRK10512        156 ALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHhh
Confidence            9998887543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=4.1e-17  Score=140.58  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----CcceeeEEEEEE--ECCeE-----E-----EEEEEeCCChhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----TIGVEFQTKTLS--IDHKT-----V-----KAQIWDTAGQERY   77 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~G~~~~   77 (224)
                      +...|+++|++++|||||+++|.+.........    +.|.+.......  ..+..     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            334699999999999999999987654322221    112111111000  00111     1     2689999999999


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--C----------HH-
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--P----------TE-  141 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~----------~~-  141 (224)
                      ..++...+..+|++++|+|+++   +.+++.+.    .+..   .++|+++++||+|+......  .          .. 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9998888999999999999987   44444332    2222   26899999999998521110  0          00 


Q ss_pred             ----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          142 ----------DAQEFAQRE---------------NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       142 ----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                                ++..+....               .++++++||++|.|+++++..+....
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                      011111211               25689999999999999998876543

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=2e-17  Score=137.10  Aligned_cols=154  Identities=17%  Similarity=0.171  Sum_probs=105.9

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----C---------CCccCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----S---------VDSKATIGVEFQTKTLSIDHKTVKAQIWDTA   72 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   72 (224)
                      +..++....++|+++|++++|||||+++|++...     .         .......|.+.......+......+.++|||
T Consensus         4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP   83 (396)
T PRK12735          4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP   83 (396)
T ss_pred             hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence            3456678889999999999999999999986210     0         0011123566666666666667789999999


Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHH
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAV---PTEDAQEFAQ  148 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~  148 (224)
                      |+..+.......+..+|++++|+|+.+... ....+++..+...   ++|.+ +++||+|+.+....   ...+++.+..
T Consensus        84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             CHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            999887777777889999999999987322 2233444444432   57755 57999999642211   1124555665


Q ss_pred             HcC-----CeEEEEcCCCCCC
Q 027382          149 REN-----LFFMETSALEATN  164 (224)
Q Consensus       149 ~~~-----~~~~~~s~~~~~~  164 (224)
                      .++     ++++++|+++|.|
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HcCCCcCceeEEecchhcccc
Confidence            543     6799999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=2.1e-17  Score=136.99  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=103.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   76 (224)
                      .....++|+++|+.++|||||+++|++.....              ......|.+.......+......+.++|+||++.
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            45678999999999999999999998632100              0011235666666666666677889999999998


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC-
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAVP---TEDAQEFAQREN-  151 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~-  151 (224)
                      |.......+..+|++++|+|+++... ....+++..+...   ++| +++++||+|+.+.....   .+++.+++...+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            87777777889999999999986322 2233344444433   577 67889999986422211   234555555554 


Q ss_pred             ----CeEEEEcCCCCC
Q 027382          152 ----LFFMETSALEAT  163 (224)
Q Consensus       152 ----~~~~~~s~~~~~  163 (224)
                          ++++++|+++|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        164 PGDDIPVIRGSALKAL  179 (394)
T ss_pred             CcCCccEEEeeccccc
Confidence                579999999983

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=1e-17  Score=128.01  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCCh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDS-----------------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAGQ   74 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~   74 (224)
                      +|+++|+.|+|||||+++|+........                 ....+.++......+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433210                 011233333222222     345689999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      ..+......++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888889999999999999987655432 344444332   258999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=4.6e-17  Score=135.56  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=107.2

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CccCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTA   72 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   72 (224)
                      ..+......++|+++|++++|||||+++|++.....              ......|.+.......+......+.++|||
T Consensus         4 ~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP   83 (409)
T CHL00071          4 EKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP   83 (409)
T ss_pred             hhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence            344556778999999999999999999999742110              001113566665555666667788999999


Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHH
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQ  148 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~  148 (224)
                      |+..+.......+..+|++++|+|+..... ....+.+..+...   ++| +++++||+|+.+....   ..+++..+.+
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~  159 (409)
T CHL00071         84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLS  159 (409)
T ss_pred             ChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            999887777778889999999999986422 2233344444332   577 7789999998642221   1134555555


Q ss_pred             HcC-----CeEEEEcCCCCCCH
Q 027382          149 REN-----LFFMETSALEATNV  165 (224)
Q Consensus       149 ~~~-----~~~~~~s~~~~~~v  165 (224)
                      ..+     ++++++|+.+|.++
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HhCCCCCcceEEEcchhhcccc
Confidence            543     57999999998754

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=2.5e-17  Score=127.56  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=109.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEE-EEEEEeCCChh-------hhhhhhHhHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV-KAQIWDTAGQE-------RYRAVTSAYYRG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~G~~-------~~~~~~~~~~~~   87 (224)
                      -.|.++|.|++|||||+++|..........++  +|.....-.+...+. .+.+-|+||.-       ......-.-+..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaF--TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF--TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccce--eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            35889999999999999999987765554444  223333223333333 48999999922       222223334568


Q ss_pred             CCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCC
Q 027382           88 AVGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALE  161 (224)
Q Consensus        88 ~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~  161 (224)
                      ++.++||+|++.+   ..|+.+..+...+..+.+  .+.|.++|+||+|+++   .....++++.+...-+ ++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999997   777777766555544332  5789999999999853   1122357777776655 99999999


Q ss_pred             CCCHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLT  174 (224)
Q Consensus       162 ~~~v~~~~~~i~~  174 (224)
                      ++|+.++++.+.+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999999887764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=5.5e-17  Score=134.60  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=103.2

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEF------SV--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      ++....++|+++|+.++|||||+++|++...      ..        ......|.+.......++.....+.+|||||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            4466789999999999999999999984310      00        001113566666666676677889999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVP---TEDAQEFAQREN  151 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~---~~~~~~~~~~~~  151 (224)
                      .|..........+|++++|+|+.+.... ...+.+..+...   ++|.+ +++||+|+.+.....   .+++++++..++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            8877677777889999999999873222 223333334332   46655 689999986422211   234666666654


Q ss_pred             -----CeEEEEcCCCCC
Q 027382          152 -----LFFMETSALEAT  163 (224)
Q Consensus       152 -----~~~~~~s~~~~~  163 (224)
                           ++++++|+++|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=6.3e-17  Score=126.17  Aligned_cols=165  Identities=18%  Similarity=0.155  Sum_probs=115.0

Q ss_pred             cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC---------hhh
Q 027382            6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG---------QER   76 (224)
Q Consensus         6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---------~~~   76 (224)
                      ..++.-......|+|.|.||||||||++++.+......+.|+++..+.  .-.+......++++||||         ++.
T Consensus       159 ~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~--vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I  236 (346)
T COG1084         159 KKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH--VGHFERGYLRIQVIDTPGLLDRPLEERNEI  236 (346)
T ss_pred             hcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee--EeeeecCCceEEEecCCcccCCChHHhcHH
Confidence            344444557788999999999999999999998887777676333332  223455667899999999         111


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-  153 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  153 (224)
                      ........-.-.++++|+||++.  .-+.+....++..+....  +.|+++|.||+|..+...  .+++..+....+.. 
T Consensus       237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~  312 (346)
T COG1084         237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEE  312 (346)
T ss_pred             HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhcccc
Confidence            12223333345788999999987  446677777778787765  489999999999874332  44555555555543 


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +..+++..+.+++..-..+....
T Consensus       313 ~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         313 PLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             ccceeeeehhhHHHHHHHHHHHh
Confidence            77788888888776666655543

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=1e-16  Score=126.03  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------------CCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      -+|+++|++|+|||||+++|+...-.....                    ...+.++......+.+..+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999998632111100                    011445555556677788999999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .+.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8887777888999999999999874322 22334443332   3689999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.74  E-value=4.5e-17  Score=138.05  Aligned_cols=153  Identities=20%  Similarity=0.181  Sum_probs=115.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hhhhhhHhHh--c
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RYRAVTSAYY--R   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~   86 (224)
                      ..+|+++|.||||||||.|+|.+.+......|  |.|+..+...+.....+++++|.||-=      .-....+.++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            35699999999999999999999888777766  466666666666677779999999911      1122233333  4


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      ++|+++-|+|+++-      ++.+....+..+-+.|++++.|++|....+-+ .-+.+++.+..++|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnL------eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNL------ERNLYLTLQLLELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchH------HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            67999999999973      33332223333347999999999998764444 345888999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++...+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9998887543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.9e-16  Score=130.49  Aligned_cols=196  Identities=16%  Similarity=0.116  Sum_probs=147.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ++--|-++|+...|||||+..|-+..........++..+....+.+. ....++|.||||+..|.++...-...+|.+++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            45567899999999999999999877765555555555666666665 44789999999999999999999999999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCC
Q 027382           94 VYDMTKR---QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALE  161 (224)
Q Consensus        94 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~  161 (224)
                      |+.++|.   .+.+.+    ...+   ..++|+++.+||+|.++   .+.+.+.+-...++         ..++++||++
T Consensus       231 VVAadDGVmpQT~EaI----khAk---~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  231 VVAADDGVMPQTLEAI----KHAK---SANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEccCCccHhHHHHH----HHHH---hcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            9999883   333322    2222   34799999999999864   34444444433333         3589999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcc
Q 027382          162 ATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGC  220 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  220 (224)
                      |+|++.+.+.++-...-+--+-....+-++-+..++..++.+.+-+-..+..+-+|++.
T Consensus       301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~v  359 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSV  359 (683)
T ss_pred             CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccE
Confidence            99999999888755544445555666778888889999888887777777777777654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=4.5e-16  Score=128.62  Aligned_cols=178  Identities=17%  Similarity=0.159  Sum_probs=127.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..-|.++|+...|||||+..+-...........++.++....+..+. ..-.+.++|||||+.|..+...-..-+|.+|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            34579999999999999999998877666555555556665555542 34578999999999999999999999999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---------eEEEEcCCC
Q 027382           94 VYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL---------FFMETSALE  161 (224)
Q Consensus        94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~s~~~  161 (224)
                      |++++|   |.+.+.+    +..+.   .++|+++.+||+|.++   .+......-..++++         .++++||++
T Consensus        85 VVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t  154 (509)
T COG0532          85 VVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT  154 (509)
T ss_pred             EEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence            999998   3333332    22232   3799999999999974   334444444444443         589999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCC
Q 027382          162 ATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKG  202 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (224)
                      |+|+++++..++-..--...+...+..-..+.......++-
T Consensus       155 g~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~  195 (509)
T COG0532         155 GEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGL  195 (509)
T ss_pred             CCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCC
Confidence            99999999988754444433333444555555555544443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=2.7e-16  Score=120.53  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCC------------cceee-----------EEE-------------EEEEC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKAT------------IGVEF-----------QTK-------------TLSID   60 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~------------~~~~~-----------~~~-------------~~~~~   60 (224)
                      ||+++|+.++|||||+++|..+.+.......            .|.+.           ...             ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976553321110            01110           000             00112


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV  138 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~  138 (224)
                      .....+.++|+||++.+.......+.  .+|++++|+|+..+.. .....++..+...   ++|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            23467899999999888665555554  6899999999986433 2234444444433   5889999999998542211


Q ss_pred             --CHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 027382          139 --PTEDAQEFAQR--------------------------ENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus       139 --~~~~~~~~~~~--------------------------~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                        ...++.++.+.                          ..++++.+|+.+|+|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              11222333221                          123799999999999998886653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=3.4e-17  Score=135.67  Aligned_cols=164  Identities=24%  Similarity=0.295  Sum_probs=121.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+++|+.|+||||||-.|+...+.....+-.  .......++.-..+...++|++.....+.....-++.||+
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl--~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL--PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccC--CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            45678999999999999999999999988865433321  1111113333344558999998766666666888999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEEcCCCCCC
Q 027382           91 AMLVYDMTKRQSFDHMAR-WLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTED-AQEFAQREN-LF-FMETSALEATN  164 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~s~~~~~~  164 (224)
                      ++++|+.+++++++.+.. |+..+++..+  .++|+|+|+||+|..+....+.+. ...+..++. +. .++|||++-.+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            999999999999999975 9999998774  589999999999997654443333 333333322 22 68999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      +.++|...-..+
T Consensus       163 ~~e~fYyaqKaV  174 (625)
T KOG1707|consen  163 VSELFYYAQKAV  174 (625)
T ss_pred             hHhhhhhhhhee
Confidence            999997654433

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=8.3e-17  Score=132.53  Aligned_cols=162  Identities=20%  Similarity=0.218  Sum_probs=123.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--C-----------CccCCcceeeEEEEEEEC---CeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS--V-----------DSKATIGVEFQTKTLSID---HKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~G~   74 (224)
                      +.++.-|+.|+-+...|||||..+|+...-.  .           .-..-.|+++..++..+-   +..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            4477888999999999999999999763221  0           111223677776666553   44499999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCe
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRENLF  153 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~  153 (224)
                      .+|.......+.-||++|+|+|++..-..+....++..+..    +.-+|.|+||+|++..+.. ...++.+.......+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999987767777776666654    5779999999999754321 122334444444557


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .+.+||++|.|+.++++++++.+
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhC
Confidence            99999999999999999998877

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=9e-17  Score=126.39  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC----------------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVD----------------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      +|+++|++++|||||+++|+...-...                .....+.+.......+.+....+.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999975221100                0112255555555566667789999999999988888


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      +...++.+|++++|+|+.+...-. ....+..+..   .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            999999999999999998743322 2333333433   2689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG2262 HflX GTPases [General function prediction only]

Probab=99.72  E-value=5.2e-16  Score=124.56  Aligned_cols=163  Identities=17%  Similarity=0.118  Sum_probs=119.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--hhhhhhH------h
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--RYRAVTS------A   83 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~~~------~   83 (224)
                      ......|.++|-.++|||||+|+|.+........-+.+.+.....+.+.+ ...+.+.||.|--  -...+..      .
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence            35678899999999999999999998776655555545555566666644 5678899999911  1122222      2


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      ....+|+++.|+|+++|+....+....+.+.+..-.+.|+|+|.||+|+.....     .........-..+.+||++|.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE  342 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence            246899999999999998888888888888877656799999999999753222     112222221158999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYRII  180 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~~  180 (224)
                      |++.+...|.+.+....
T Consensus       343 gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         343 GLDLLRERIIELLSGLR  359 (411)
T ss_pred             CHHHHHHHHHHHhhhcc
Confidence            99999999888776544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=3.2e-16  Score=131.34  Aligned_cols=152  Identities=14%  Similarity=0.169  Sum_probs=108.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|+.++|||||+.+|+...-..                             ......|.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            4567999999999999999999997522100                             00112256666666667778


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH-------HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF-------DHMARWLDELRGHADKNIV-IMLIGNKCDLGS  134 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~  134 (224)
                      .+.+.++|+||++.|.......+..+|++|+|+|+++. .+       ...++.+..+...   ++| +++++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCc
Confidence            88999999999999999999999999999999999872 22       2334443333322   464 788999999852


Q ss_pred             CC--C----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 027382          135 LR--A----VPTEDAQEFAQREN-----LFFMETSALEATNVET  167 (224)
Q Consensus       135 ~~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  167 (224)
                      ..  .    ...++++.+++..+     ++|+++|+++|+|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11  0    01345667777665     5799999999999854

>PLN03126 Elongation factor Tu; Provisional

Probab=99.71  E-value=3.1e-16  Score=132.04  Aligned_cols=150  Identities=16%  Similarity=0.114  Sum_probs=104.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEF------SV--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   76 (224)
                      .....++|+++|++++|||||+++|++...      ..        ......|.+.......+......+.++|+||++.
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            467789999999999999999999996211      11        1122235666655555666677899999999999


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc--
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQRE--  150 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~--  150 (224)
                      |.......+..+|++++|+|+.+.... ..++++..+...   ++| +++++||+|+.+....   -.+++.++....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            988788888899999999999874332 234444444433   577 7789999998642211   112445555553  


Q ss_pred             ---CCeEEEEcCCCCCC
Q 027382          151 ---NLFFMETSALEATN  164 (224)
Q Consensus       151 ---~~~~~~~s~~~~~~  164 (224)
                         +++++++|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               46799999998854

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.71  E-value=7.6e-16  Score=118.86  Aligned_cols=159  Identities=19%  Similarity=0.185  Sum_probs=105.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hh------hh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RY------RA   79 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~------~~   79 (224)
                      .-+..+|+|+|.|++|||||.|.+++......+.... ++.......+.....++.++||||.-      .+      -.
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~-TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH-TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc-ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4578999999999999999999999998877666553 33334444456777899999999911      11      11


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC-------------CCCH---H
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR-------------AVPT---E  141 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------------~~~~---~  141 (224)
                      .....+..||.+++|+|+++...  -..+.+.+....     .+|-++|+||.|....+             .++.   +
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            23445678999999999996221  122222222222     58899999999975321             1211   1


Q ss_pred             HHHHHHHHc---------CC----eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          142 DAQEFAQRE---------NL----FFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       142 ~~~~~~~~~---------~~----~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ..++|....         +.    .+|.+||++|+|++++-++|+...
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            111222111         11    278999999999999988877544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.1e-15  Score=112.06  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      +.+...-|+++|.++||||||||+|+++..-.-...+.|.|.......++..   +.++|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            3446678999999999999999999997743333444477777666666554   88999999          4555666


Q ss_pred             hHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC----Ce
Q 027382           81 TSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN----LF  153 (224)
Q Consensus        81 ~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~  153 (224)
                      ...|+.   +..++++++|+..+-...+ .+.++.+.+.   ++|+++++||+|.....+. ...+...++...    ..
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~~---~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLEL---GIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCcc
Confidence            666664   3567888889876332211 1334444443   6999999999998653332 222333333322    22


Q ss_pred             --EEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          154 --FMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       154 --~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                        ++.+|+.++.|++++...|.+.+.
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhh
Confidence              677899999999998888877654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=2.5e-16  Score=133.00  Aligned_cols=154  Identities=21%  Similarity=0.174  Sum_probs=101.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------cC-------------------CcceeeEEEEEEEC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------------KA-------------------TIGVEFQTKTLSID   60 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~   60 (224)
                      ....++|+++|+.++|||||+++|+...-....            ..                   ..|++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            467799999999999999999999865321110            00                   11444555455556


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      .....+.++||||++.+.......+..+|++++|+|+.....-.. .+.+..+... . ..|+++++||+|+.+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence            667789999999999887666666899999999999986422111 1111112221 1 246899999999864222112


Q ss_pred             HH----HHHHHHHc----CCeEEEEcCCCCCCHHHH
Q 027382          141 ED----AQEFAQRE----NLFFMETSALEATNVETA  168 (224)
Q Consensus       141 ~~----~~~~~~~~----~~~~~~~s~~~~~~v~~~  168 (224)
                      ++    +..+....    ..+++++||++|.|+.+.
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            22    22333333    367999999999998764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=7.4e-16  Score=127.76  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=104.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC------C--------CccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFS------V--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      .++....++|+++|+.++|||||+++|++....      .        ......|.+.......+......+.++||||+
T Consensus         6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~   85 (396)
T PRK00049          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH   85 (396)
T ss_pred             ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence            345677899999999999999999999873110      0        00113366666666666666778999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAV---PTEDAQEFAQRE  150 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~  150 (224)
                      ..+.......+..+|++++|+|+..+.. ....+++..+...   ++|.+ +++||+|+.+....   -..++..+....
T Consensus        86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~  161 (396)
T PRK00049         86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence            8887777777899999999999987422 2333444444433   57875 58999998642211   112344454443


Q ss_pred             -----CCeEEEEcCCCCCC
Q 027382          151 -----NLFFMETSALEATN  164 (224)
Q Consensus       151 -----~~~~~~~s~~~~~~  164 (224)
                           +++++++|++++.+
T Consensus       162 ~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        162 DFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCCccCCcEEEeecccccC
Confidence                 36799999998753

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=4.6e-16  Score=118.82  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEE--EEEEC--------CeEEEEEEEeCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTK--TLSID--------HKTVKAQIWDTA   72 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~~~--------~~~~~~~l~D~~   72 (224)
                      +|+++|+.++|||||+.+|+...-.....              ...|.+....  ...+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998643211000              0112222222  22222        337889999999


Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      |+..+......+++.+|++++|+|+++...... +..+.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            999999999999999999999999998655443 233333322   258999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=6.7e-16  Score=121.94  Aligned_cols=142  Identities=13%  Similarity=0.189  Sum_probs=91.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVD----------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-----   78 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----   78 (224)
                      ..++|+|+|.+|+|||||+|+|++......          ..++.+.......+..++..+.+.+|||||-....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999876543          22333344444455556777899999999932110     


Q ss_pred             ---------------------hhhHhHhc--CCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           79 ---------------------AVTSAYYR--GAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        79 ---------------------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                                           ......+.  .+|+++|+++.+. ..+... ...+..+..    .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence                                 00001222  4678888888765 222111 333344432    589999999999854


Q ss_pred             CC--CCCHHHHHHHHHHcCCeEEEEcCC
Q 027382          135 LR--AVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus       135 ~~--~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      ..  ......+.+.+..+++.++.....
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            22  223445667777889988877653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=4.7e-16  Score=129.36  Aligned_cols=149  Identities=22%  Similarity=0.189  Sum_probs=98.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cCCcceeeEEEEEEECCeEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDS-------------------------------KATIGVEFQTKTLSIDHKTV   64 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   64 (224)
                      ++|+++|+.++|||||+.+|+...-....                               ....|.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999753221100                               01124445555555666677


Q ss_pred             EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH----
Q 027382           65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT----  140 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----  140 (224)
                      .+.++||||++.|.......+..+|++++|+|+.....-. .++.+..+....  ..++++++||+|+.+......    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            8999999999988777777889999999999998643222 222222222221  235889999999864222111    


Q ss_pred             HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 027382          141 EDAQEFAQREN---LFFMETSALEATNVET  167 (224)
Q Consensus       141 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~  167 (224)
                      +++..+....+   ++++++||++|+|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            22333444443   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.69  E-value=6.8e-16  Score=129.45  Aligned_cols=153  Identities=14%  Similarity=0.094  Sum_probs=105.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------CccCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEF--SV---------------------------DSKATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|+.++|||||+.+|+...-  ..                           ......|.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            45678999999999999999999986211  00                           00012256666666667778


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC-
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIV-IMLIGNKCDLGS-  134 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-  134 (224)
                      ...+.++|+||+..|.......+..+|++++|+|++....      -...++.+..+...   ++| +++++||+|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence            8899999999999998888888999999999999986421      12333333333332   455 678999999532 


Q ss_pred             -CCCCC----HHHHHHHHHHc-----CCeEEEEcCCCCCCHHH
Q 027382          135 -LRAVP----TEDAQEFAQRE-----NLFFMETSALEATNVET  167 (224)
Q Consensus       135 -~~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~  167 (224)
                       ..+..    .+++.++....     +++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             11111    23344444443     35799999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=8.8e-16  Score=121.28  Aligned_cols=143  Identities=18%  Similarity=0.193  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcc------CC----------cceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSK------AT----------IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   80 (224)
                      +|+++|++|+|||||+++|+.........      .+          .+.+.......+.+..+.+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999998643211110      00          122223333334445678999999999888888


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE--EEc
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFM--ETS  158 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~s  158 (224)
                      +..++..+|++++|+|+++.........| ..+..   .++|+++++||+|+....  ..+...++....+.+++  .+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            88899999999999999986544332222 23332   268999999999986431  12334444444444333  334


Q ss_pred             CCCCCCH
Q 027382          159 ALEATNV  165 (224)
Q Consensus       159 ~~~~~~v  165 (224)
                      ..++.++
T Consensus       155 ~~~~~~~  161 (268)
T cd04170         155 IGEGDDF  161 (268)
T ss_pred             ccCCCce
Confidence            4554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=1.6e-15  Score=114.44  Aligned_cols=158  Identities=12%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV---EFQTKTLSIDHKTVKAQIWDTAGQERYRA-----VTSAYYR   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~~~~~~~   86 (224)
                      +++|+++|.+|+|||||+|+|++.........+.+.   +.....+.. .....+.+||+||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986654322222221   111111111 1134689999999643221     1222367


Q ss_pred             CCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----C---CH----HHHHHHH----HHc
Q 027382           87 GAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSLRA----V---PT----EDAQEFA----QRE  150 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~---~~----~~~~~~~----~~~  150 (224)
                      .+|++++|.+.    .+... ..++..+.+.   +.|+++|+||+|+.....    .   ..    +++++.+    ...
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887432    12222 3345555543   578999999999842111    0   01    1222222    222


Q ss_pred             C---CeEEEEcCC--CCCCHHHHHHHHHHHHHHHH
Q 027382          151 N---LFFMETSAL--EATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       151 ~---~~~~~~s~~--~~~~v~~~~~~i~~~i~~~~  180 (224)
                      +   -+++.+|+.  .+.++..+.+.++..+.+..
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            2   258999998  57888988888888776543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.3e-16  Score=111.03  Aligned_cols=156  Identities=16%  Similarity=0.228  Sum_probs=114.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +...-|++++|-.++|||||++.|.+.... +..||.-.+..  .  +.-...+++.+|.+|+...+..|..++..+|++
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE--~--l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--E--LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChH--H--heecCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            345568999999999999999999987653 33344222212  2  223667899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH---H---c--------CC---e
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ---R---E--------NL---F  153 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~---~--------~~---~  153 (224)
                      ++.+|+.|.+.+.+.+..++.+..... .++|+++.+||+|.+.  ..+.++.+-...   .   .        ++   .
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e  169 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE  169 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence            999999999999999888777654432 5899999999999874  334555442221   1   1        11   3


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      .+-||...+.+..+.|.++-.
T Consensus       170 vfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  170 VFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEEEEccCccceeeeehhh
Confidence            566777777777777776654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.6e-15  Score=118.05  Aligned_cols=157  Identities=21%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSA   83 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~   83 (224)
                      ..+...+|+++|.|++|||||+++|.+........++  +|.....-.+++++..++++|+||.-.       -......
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls  136 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS  136 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc--eecccccceEeecCceEEEEcCcccccCcccCCCCcceeee
Confidence            3556778999999999999999999998766555554  334444445677889999999998221       1244566


Q ss_pred             HhcCCCEEEEEEeCCChhh-HHHHHHHHHH-----------------------------------------HHhc-----
Q 027382           84 YYRGAVGAMLVYDMTKRQS-FDHMARWLDE-----------------------------------------LRGH-----  116 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~~-----  116 (224)
                      ..++||++++|+|+..... .+.+.+.+..                                         +.+.     
T Consensus       137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA  216 (365)
T COG1163         137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA  216 (365)
T ss_pred             eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence            7899999999999986554 4444332111                                         0000     


Q ss_pred             -------------------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          117 -------------------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       117 -------------------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                                         ...-+|.+.|.||+|+..     .+++..+.+..  ..+.+||+.+.|++++.+.+.+.+
T Consensus       217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                               011478999999999863     55566666655  679999999999999998888654

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=5.2e-16  Score=118.46  Aligned_cols=163  Identities=15%  Similarity=0.171  Sum_probs=111.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-------hhhhhhHhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-------RYRAVTSAY   84 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~~~   84 (224)
                      ...+++|+++|..|+|||||||+|+++...+......+.+...... ..+..-.+.+||+||-.       +++.....+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            5578999999999999999999999877766554443333332222 12333678999999933       378889999


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC-------CCCHHHHHHHHHH--------
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR-------AVPTEDAQEFAQR--------  149 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~--------  149 (224)
                      +...|+++++.++.|+.--.....|.+.+....  +.++++++|.+|....-       ......+++|..+        
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999998654333333434333322  47899999999975321       1111122222221        


Q ss_pred             c--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          150 E--NLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       150 ~--~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      .  --|++.++...++|++.+...++..+.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1  126788888999999999999887764

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.67  E-value=3.3e-16  Score=119.68  Aligned_cols=162  Identities=16%  Similarity=0.243  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhh-----hhhHhHhcCCCE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYR-----AVTSAYYRGAVG   90 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~d~   90 (224)
                      ||+++|+.+|||||+.+.++.+-.+.... ..+.|.......+ ....+.+.+||+||+..+-     ......++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999999765543322 2223333333333 2455689999999986442     346778999999


Q ss_pred             EEEEEeCCChhhHH---HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--CCC----HHHHHHHHHHcC---CeEEEEc
Q 027382           91 AMLVYDMTKRQSFD---HMARWLDELRGHADKNIVIMLIGNKCDLGSLR--AVP----TEDAQEFAQREN---LFFMETS  158 (224)
Q Consensus        91 vi~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~----~~~~~~~~~~~~---~~~~~~s  158 (224)
                      +|||+|+.+.+-.+   .+...+..+.+.. ++..+.++++|+|+..+.  ...    .+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998544333   3334444444443 488899999999985321  111    122333344445   6799999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHh
Q 027382          159 ALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       159 ~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      ..+ +.+-++|..+++.+.....
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHH
Confidence            998 5788888888877765443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=1.7e-15  Score=132.71  Aligned_cols=154  Identities=21%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------cC-------------------CcceeeEEEEEEE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------------KA-------------------TIGVEFQTKTLSI   59 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~   59 (224)
                      +.+..++|+++|++++|||||+++|+...-....            ..                   ..|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            4556789999999999999999999974322110            00                   0133444444455


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382           60 DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP  139 (224)
Q Consensus        60 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~  139 (224)
                      ......+.++||||++.+.......+..+|++++|+|+.....-. ..+.+..+....  ..++++++||+|+.+.....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHH
Confidence            566678899999999988766666788999999999997643221 122222222221  25688999999986422111


Q ss_pred             H----HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 027382          140 T----EDAQEFAQREN---LFFMETSALEATNVET  167 (224)
Q Consensus       140 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~  167 (224)
                      .    .++.++....+   .+++++||++|.|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    22334444544   3599999999999874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.66  E-value=3.4e-15  Score=125.13  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=98.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC------CCCCC--------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN------EFSVD--------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   76 (224)
                      .....++|+++|+.++|||||+++|.+.      .....        .....|++.......++.....+.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            4567899999999999999999999732      10000        111135666666667777778899999999988


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc--
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAVP---TEDAQEFAQRE--  150 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~--  150 (224)
                      +-......+..+|++++|+|+.+... ...++.+..+...   ++| +++++||+|+.+.....   ..++.++....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            86666666778999999999986432 2233344444433   578 57889999986422211   11233443332  


Q ss_pred             ---CCeEEEEcCC---CCCC
Q 027382          151 ---NLFFMETSAL---EATN  164 (224)
Q Consensus       151 ---~~~~~~~s~~---~~~~  164 (224)
                         .++++++|+.   +|.|
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n  232 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTN  232 (447)
T ss_pred             CCCcceEEEeccceeecCCC
Confidence               3578888875   4554

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=2.7e-15  Score=132.64  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------C-----cc---CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------D-----SK---ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +.+...+|+|+|+.++|||||+++|+...-..        .     +.   ...+.+.......+.+..+.+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            34567899999999999999999998632100        0     00   01233444444445556789999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99988899999999999999999986665544333 33333   2689999999999853

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.66  E-value=5.7e-15  Score=111.40  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=93.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh----hHhH
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAV----TSAY   84 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~----~~~~   84 (224)
                      ++|+++|.+|+|||||+|.+++...........+.+..............+.++||||-...       ...    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            47999999999999999999997654333212223333222222234568999999993322       111    1222


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeEEE
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAV------PTEDAQEFAQRENLFFME  156 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~  156 (224)
                      ..++|++++|+++.. .+. .....++.+.+..+  .-.+++++.|+.|......+      ....++...++.+..++.
T Consensus        81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            467899999999876 221 12233344443322  12568888999986432211      124456666666666666


Q ss_pred             EcCC-----CCCCHHHHHHHHHHHHH
Q 027382          157 TSAL-----EATNVETAFLTVLTEIY  177 (224)
Q Consensus       157 ~s~~-----~~~~v~~~~~~i~~~i~  177 (224)
                      .+.+     .+.++.++++.+.+.+.
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~  184 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVK  184 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHH
Confidence            6543     44556666666554443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=2.4e-15  Score=103.83  Aligned_cols=106  Identities=21%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYYR   86 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~   86 (224)
                      +|+|+|.+|+|||||+|+|++.... ....+..+.......+.++...  +.++||||-..         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986432 2222222222222333444444  46999999321         1112333348


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK  129 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK  129 (224)
                      .+|++++|+|++++.. +.....+..++    ...|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877322 22333444443    37999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.65  E-value=3.2e-15  Score=127.43  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=88.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c-------cCCcceeeEEEEEEECCeEEEEEE
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-------------S-------KATIGVEFQTKTLSIDHKTVKAQI   68 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~~~~~l   68 (224)
                      +...+...+|+|+|++++|||||+++|+...-...             .       ....|.++......+.+..+.+.+
T Consensus         4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inl   83 (526)
T PRK00741          4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINL   83 (526)
T ss_pred             cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEE
Confidence            34556778999999999999999999974211100             0       011244555555566667789999


Q ss_pred             EeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      |||||+..+.......+..+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            99999998888778889999999999999874322 23344444333   3799999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=99.65  E-value=3.8e-15  Score=127.02  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=89.2

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccCCcceeeEEEEEEECCeEEEEE
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------------SKATIGVEFQTKTLSIDHKTVKAQ   67 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~   67 (224)
                      +........+|+|+|++++|||||+++|+...-...                    .....|.++......+++..+.+.
T Consensus         4 ~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~in   83 (527)
T TIGR00503         4 LLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVN   83 (527)
T ss_pred             hhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEE
Confidence            455667788999999999999999999864211100                    001125556666666777889999


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      +|||||+..+.......+..+|++|+|+|+++.-. .....++.....   .++|+++++||+|+..
T Consensus        84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            99999999888777778899999999999987321 223344444333   3689999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=7.6e-15  Score=119.38  Aligned_cols=159  Identities=20%  Similarity=0.237  Sum_probs=120.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------C------ccCCcceeeEEEEEEE-----CCeEEEEEEEeCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-------D------SKATIGVEFQTKTLSI-----DHKTVKAQIWDTA   72 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~   72 (224)
                      +.++.-|..++-+-..|||||..||+......       +      -....|+++....+.+     ++..+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            34556677889999999999999997632111       0      0112256666555544     3467999999999


Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHHcC
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EFAQREN  151 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~~~  151 (224)
                      ||-.|......-+..|.++++|+|++..-..+.+...+..+.+    +.-++-|+||+||+..   ..+..+ ++-.-.|
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iG  157 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIG  157 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhC
Confidence            9999999999999999999999999987777777887777766    5679999999999742   333333 3444456


Q ss_pred             Ce---EEEEcCCCCCCHHHHHHHHHHHH
Q 027382          152 LF---FMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       152 ~~---~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++   .+.+|||+|.|++++++.|++.+
T Consensus       158 id~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         158 IDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CCcchheeEecccCCCHHHHHHHHHhhC
Confidence            53   78999999999999999988776

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.63  E-value=5.6e-15  Score=123.71  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEE---------------EEC-------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTL---------------SID-------------   60 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~-------------   60 (224)
                      ....++|+++|+...|||||+.+|.+....   +.-....+.+......               ...             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            356789999999999999999999974321   1111100000000000               000             


Q ss_pred             ---CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           61 ---HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        61 ---~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                         .....+.++|+||++.+.......+..+|++++|+|+.++.......+.+..+....  -.++++++||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHH
Confidence               002468999999999998887888889999999999987421222233333332221  246899999999864221


Q ss_pred             --CCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          138 --VPTEDAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       138 --~~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                        ...++++++...   .+.+++++||++|.|++.+++.|.+.+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence              112334444333   356899999999999998888877543

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=2.2e-14  Score=126.75  Aligned_cols=120  Identities=14%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----c-----------cCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----S-----------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      ..+...+|+++|++++|||||+++|+...-...     .           ....|++.......+.+....+.++||||+
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~   83 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH   83 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence            355778999999999999999999975311100     0           012245555555555567788999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+...+...+..+|++++|+|+.+...... +..+..+..   .++|+++++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8888888999999999999999987543322 233333433   2589999999999863

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.3e-15  Score=121.30  Aligned_cols=169  Identities=22%  Similarity=0.235  Sum_probs=115.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----h----hhhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-----R----AVTS   82 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~----~~~~   82 (224)
                      ....++|+++|.||+|||||+|.|........+.-+ |+|.......++-..+.+.+.||+|-.+.     .    ....
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            445699999999999999999999998775444333 77787777777778889999999994431     1    1123


Q ss_pred             hHhcCCCEEEEEEeC--CChhhHHHHHHHHHHHHhcCC------CCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHc---
Q 027382           83 AYYRGAVGAMLVYDM--TKRQSFDHMARWLDELRGHAD------KNIVIMLIGNKCDLGSL-RAVPTEDAQEFAQRE---  150 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~--~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~---  150 (224)
                      ..+..+|++++|+|+  ++-++...+.+.+........      ...|++++.||.|+... .+.... ...+....   
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~  422 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRS  422 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCc
Confidence            446789999999999  444444444444444433222      24789999999999643 111111 11122211   


Q ss_pred             CCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382          151 NLF-FMETSALEATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       151 ~~~-~~~~s~~~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                      ..+ +.++|+++++|+..+.+.+.+.+...-..
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            233 45699999999999999998877666543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=6.5e-15  Score=118.27  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------ccCCcceeeEEEEEEECC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----------------------------SKATIGVEFQTKTLSIDH   61 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (224)
                      .....++++++|+..+|||||+-+|+...-...                             ...-.|.++......+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            345779999999999999999999987321110                             011127777777777888


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      ..+.+.++|+||+..|-.....-...||+.|+|+|+.+.+.      ..+.++ ...+.+..+ -..+++++||+|+.+.
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG-i~~lIVavNKMD~v~w  160 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG-IKQLIVAVNKMDLVSW  160 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC-CceEEEEEEccccccc
Confidence            88899999999999999989999999999999999998531      111222 222232222 2347889999999864


Q ss_pred             CCCCHHHHH----HHHHHc-----CCeEEEEcCCCCCCHHHH
Q 027382          136 RAVPTEDAQ----EFAQRE-----NLFFMETSALEATNVETA  168 (224)
Q Consensus       136 ~~~~~~~~~----~~~~~~-----~~~~~~~s~~~~~~v~~~  168 (224)
                      ++..++++.    .+.+..     +++|+++|+..|.|+.+.
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            443444433    233332     257999999999987653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=1.6e-15  Score=111.12  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=72.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhH---hcCCCEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAY---YRGAVGA   91 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~v   91 (224)
                      -.|+++|+.|+|||+|..+|.++...... ..+...   ....+ ......+.++|+||+...+......   ...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B----SSEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            35899999999999999999998543222 111111   11111 2344578999999999887655444   8889999


Q ss_pred             EEEEeCCC-hhhHHHHHHHH-HHHHhc--CCCCCcEEEEEeCCCCCC
Q 027382           92 MLVYDMTK-RQSFDHMARWL-DELRGH--ADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        92 i~v~d~~~-~~s~~~~~~~~-~~~~~~--~~~~~p~ilv~nK~D~~~  134 (224)
                      |||+|.+. +..+..+.+++ ..+...  ....+|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999975 44555555543 333322  235799999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.6e-14  Score=127.63  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----Ccc-----------CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----DSK-----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +.+...+|+|+|++++|||||+++|+...-..     ...           ...|++.......+.+.+..+.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            35567799999999999999999997532111     000           01245555555556667789999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+...+...+..+|++++|+|+.+....... .++..+..   .++|+++++||+|+..
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88877888999999999999999875444322 33333333   2689999999999874

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=113.56  Aligned_cols=159  Identities=15%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d   89 (224)
                      .|.++|.|++|||||++++.+........++++..-.--.+.+ ...-.+.+-|+||.-+       ..-..-..+.++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4889999999999999999998776655555333222222223 3445688999999221       1112233356788


Q ss_pred             EEEEEEeCCChh---hHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCe-EEEEcC
Q 027382           90 GAMLVYDMTKRQ---SFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ----RENLF-FMETSA  159 (224)
Q Consensus        90 ~vi~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~-~~~~s~  159 (224)
                      +++.|+|++..+   ..+........+..+..  .+.|.++|+||+|+..    +.++++++.+    ..+.. ++.+|+
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~----~~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL----DEEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc----CHHHHHHHHHHHHHhcCCCcceeeeh
Confidence            999999998644   24444444444444332  5789999999999653    3344444333    33332 222999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 027382          160 LEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      .+++|++++...+.+.+.+..
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999887776664

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=7.5e-14  Score=111.95  Aligned_cols=82  Identities=21%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccC------CcceeeEEEE---------------EEECC-eEEEEEEEeCCCh-
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKA------TIGVEFQTKT---------------LSIDH-KTVKAQIWDTAGQ-   74 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~G~-   74 (224)
                      |+++|.++||||||+|+|.+........|      ..|.......               ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998775432222      2222221110               00122 4478999999996 


Q ss_pred             ---hhhhhhhH---hHhcCCCEEEEEEeCCC
Q 027382           75 ---ERYRAVTS---AYYRGAVGAMLVYDMTK   99 (224)
Q Consensus        75 ---~~~~~~~~---~~~~~~d~vi~v~d~~~   99 (224)
                         .....+..   ..++.+|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               33333333   35899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK09866 hypothetical protein; Provisional

Probab=99.59  E-value=2.3e-13  Score=115.63  Aligned_cols=109  Identities=12%  Similarity=0.123  Sum_probs=73.6

Q ss_pred             EEEEEEeCCChhh-----hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382           64 VKAQIWDTAGQER-----YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV  138 (224)
Q Consensus        64 ~~~~l~D~~G~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~  138 (224)
                      ..+.++||||-..     ........+..+|+++||+|+....+... ...++.+.+. +...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence            4578999999532     23345567999999999999987433222 2233444433 223699999999998643333


Q ss_pred             CHHHHHHHHHH----cC---CeEEEEcCCCCCCHHHHHHHHHH
Q 027382          139 PTEDAQEFAQR----EN---LFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       139 ~~~~~~~~~~~----~~---~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ..+.+..+...    ..   ..++++||+.|.|++.+++.+..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            35555555432    22   25999999999999999988875

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=9.1e-14  Score=122.82  Aligned_cols=146  Identities=13%  Similarity=0.094  Sum_probs=96.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---C--Ccc-----------CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS---V--DSK-----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      ..+...+|+|+|++++|||||+++|+...-.   .  ...           ...|++.......+.+....+.++||||+
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~   85 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH   85 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence            3566789999999999999999999742111   0  000           12245555555555566789999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--  152 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--  152 (224)
                      ..+.......+..+|++++|+|+...-.... ...+..+...   ++|+++++||+|+.+..  .....+++....+.  
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~  159 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANP  159 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCe
Confidence            8887777888899999999999887543333 2233333332   58899999999987533  12233344333333  


Q ss_pred             --eEEEEcCCCC
Q 027382          153 --FFMETSALEA  162 (224)
Q Consensus       153 --~~~~~s~~~~  162 (224)
                        ..+++|+.++
T Consensus       160 ~~~~ipisa~~~  171 (693)
T PRK00007        160 VPIQLPIGAEDD  171 (693)
T ss_pred             eeEEecCccCCc
Confidence              2455555544

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.57  E-value=8.3e-15  Score=129.75  Aligned_cols=129  Identities=15%  Similarity=0.103  Sum_probs=89.6

Q ss_pred             CCCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCC---ccCCcceeeEEEEEEECCe
Q 027382            1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF---------------SVD---SKATIGVEFQTKTLSIDHK   62 (224)
Q Consensus         1 ~~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~---------------~~~---~~~~~~~~~~~~~~~~~~~   62 (224)
                      |-+++..++++.+...||+++|+.++|||||+++|+...-               ...   +..|+..........+++.
T Consensus         5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~   84 (720)
T TIGR00490         5 MIDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGN   84 (720)
T ss_pred             HHHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCC
Confidence            4455667777888889999999999999999999985311               000   1112222222222335677


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .+.+.+|||||+..+.......+..+|++++|+|+.+.-.......| ..+.+   .+.|+++++||+|..
T Consensus        85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence            89999999999998888888899999999999999874322222222 22222   257889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.54  E-value=2.2e-13  Score=113.39  Aligned_cols=163  Identities=20%  Similarity=0.261  Sum_probs=124.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ++..+.++++.|+|+.++|||.|++.++++.+...+..+....+....+.+.+....+.+-|.+-. ....+...- ..|
T Consensus       419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c  496 (625)
T KOG1707|consen  419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC  496 (625)
T ss_pred             ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence            345679999999999999999999999999988766666666666666666777788888888754 222222222 779


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~  167 (224)
                      |+++++||.+++.++......++.....  ...|+++|++|+|+++..+...-...+++.+++++ .+.+|.++... .+
T Consensus       497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~  573 (625)
T KOG1707|consen  497 DVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE  573 (625)
T ss_pred             eeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence            9999999999999999888877655544  47999999999999875543333348999999985 77788775323 77


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      +|..|....
T Consensus       574 lf~kL~~~A  582 (625)
T KOG1707|consen  574 LFIKLATMA  582 (625)
T ss_pred             HHHHHHHhh
Confidence            888877654

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=2.6e-13  Score=119.92  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCc------c----------CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhH
Q 027382           21 IGDSAVGKSQLLARFARNEFSVDS------K----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAY   84 (224)
Q Consensus        21 ~G~~~~GKSsli~~l~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~   84 (224)
                      +|++++|||||+++|+...-....      .          ...|.+.......+.+..+.+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653221000      0          012444444444555567899999999999888888889


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      +..+|++++|+|++..........| ..+..   .++|+++|+||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            9999999999999886555433323 33332   268999999999985

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=2.5e-13  Score=107.26  Aligned_cols=129  Identities=11%  Similarity=0.109  Sum_probs=76.8

Q ss_pred             cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--
Q 027382            4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV--   80 (224)
Q Consensus         4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--   80 (224)
                      .++.+.+...+.++|+++|.+|+||||++|+|++........ .+.+.+.......  .....+.+|||||.......  
T Consensus        27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e  104 (313)
T TIGR00991        27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYIND  104 (313)
T ss_pred             HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHH
Confidence            345566677789999999999999999999999876532221 1112222222222  24578999999995433111  


Q ss_pred             -----hHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCC
Q 027382           81 -----TSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGS  134 (224)
Q Consensus        81 -----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~  134 (224)
                           ...++  ...|+++||..++.....+.-...++.+.+..+  .-.+.+++.|+.|..+
T Consensus       105 ~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       105 QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence                 11112  268999999665432111111223333333322  1246899999999753

>cd00066 G-alpha G protein alpha subunit

Probab=99.52  E-value=3.6e-13  Score=108.58  Aligned_cols=121  Identities=20%  Similarity=0.229  Sum_probs=88.7

Q ss_pred             CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhcCC-CCCcEEEEEe
Q 027382           60 DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLDELRGHAD-KNIVIMLIGN  128 (224)
Q Consensus        60 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~n  128 (224)
                      ....+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.+... .+.|+++++|
T Consensus       157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence            34567899999999999999999999999999999999974          345555555555444332 5799999999


Q ss_pred             CCCCCCC--------------C--CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          129 KCDLGSL--------------R--AVPTEDAQEFAQR----------ENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       129 K~D~~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      |.|+..+              .  ..+.+.+..|...          ..+..+.++|.+..++..+|+.+.+.|.+..
T Consensus       237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9996211              0  2234555544432          1234677899999999999999999887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.52  E-value=3.4e-13  Score=104.79  Aligned_cols=127  Identities=13%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------h-
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------A-   79 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~-   79 (224)
                      +..+.....++|+|+|.+|+|||||+|+|++.......... +.+..............+.+|||||-....      . 
T Consensus        23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~-~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~  101 (249)
T cd01853          23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQ-SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRK  101 (249)
T ss_pred             HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHH
Confidence            34556778999999999999999999999997654332111 122222222333345678999999944331      0 


Q ss_pred             ---hhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCC
Q 027382           80 ---VTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLGS  134 (224)
Q Consensus        80 ---~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~  134 (224)
                         ....++.  ..|+++||..++....-......++.+.+..+.  -.++++|.||+|...
T Consensus       102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence               1222332  578888887666422111112333334433221  256899999999853

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=3.3e-13  Score=99.23  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=79.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc---CCCEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR---GAVGAM   92 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~vi   92 (224)
                      -.|+++|..+||||+|.-+|..+.....+     +........+....-.++++|.||+.+.+.-...+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            46899999999999999999987432221     1122222222223334899999999999888888887   789999


Q ss_pred             EEEeCCC-hhhHHHHHH-HHHHHHhc--CCCCCcEEEEEeCCCCCC
Q 027382           93 LVYDMTK-RQSFDHMAR-WLDELRGH--ADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        93 ~v~d~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ilv~nK~D~~~  134 (224)
                      ||+|... ......+.+ ++..+...  ....+|++++.||.|+..
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            9999865 233444444 44444444  246789999999999853

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.52  E-value=1.3e-13  Score=92.85  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhHhHhcCCCEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----QERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi   92 (224)
                      ||+++|..|+|||||.+.|.+...  -|..|.       -+.++..    -.+||||    +..+..........+|.++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ-------Ave~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ-------AVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccc-------eeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999987653  232331       1222111    1479999    3444444555678999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFLT  171 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~  171 (224)
                      +|-.++++++.-.     ..+...  ...|+|-+++|.|+++  ....+..++|..+-|. ++|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999998754221     111111  2456999999999985  2345678888888887 4899999999999999987


Q ss_pred             HHH
Q 027382          172 VLT  174 (224)
Q Consensus       172 i~~  174 (224)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            753

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.50  E-value=3.5e-13  Score=109.55  Aligned_cols=159  Identities=15%  Similarity=0.214  Sum_probs=114.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--C------------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS--V------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      ..-+|+++-+...|||||+..|+...-.  .            .-....|+++-.+..-+.++++.++++|||||..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            3458999999999999999999874321  1            0112237888888888888999999999999999999


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHH-------cC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQR-------EN  151 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~-------~~  151 (224)
                      .....++-.|++++++|+.+ ..+.+.+..+.....   .+.+.|+|+||+|.++.+.. -.++...+.-.       +.
T Consensus        84 EVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            99999999999999999998 333344444333322   25778899999999865531 12333343333       45


Q ss_pred             CeEEEEcCCCC----------CCHHHHHHHHHHHH
Q 027382          152 LFFMETSALEA----------TNVETAFLTVLTEI  176 (224)
Q Consensus       152 ~~~~~~s~~~~----------~~v~~~~~~i~~~i  176 (224)
                      +|++..|+++|          .++.-+|+.|++.+
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            68888898876          34566666665554

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.50  E-value=1.3e-12  Score=107.89  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce--eeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV--EFQTKTLS-------------------ID-HKTVKAQIWDTAG   73 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-------------------~~-~~~~~~~l~D~~G   73 (224)
                      ++|+++|.|+||||||+|+|.+........+..+.  +.....+.                   .+ .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987765432222221  11111110                   11 2346789999999


Q ss_pred             h----hhhhhh---hHhHhcCCCEEEEEEeCC
Q 027382           74 Q----ERYRAV---TSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        74 ~----~~~~~~---~~~~~~~~d~vi~v~d~~   98 (224)
                      .    .....+   ....++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    122222   333488999999999997

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.49  E-value=1.5e-12  Score=101.68  Aligned_cols=164  Identities=18%  Similarity=0.337  Sum_probs=118.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhHhHhcCC--
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI--DHKTVKAQIWDTAGQERYRAVTSAYYRGA--   88 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~--   88 (224)
                      +.--+|+|+|+.++||||||.+|.+..   .+.+..|..+.+..+.-  .....++.+|-..|...+..+....+...  
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~  126 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL  126 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence            355689999999999999999998765   33444455555444433  23345788898888776666666655433  


Q ss_pred             --CEEEEEEeCCCh-hhHHHHHHHHHHHHhcCC-----------------------------------------------
Q 027382           89 --VGAMLVYDMTKR-QSFDHMARWLDELRGHAD-----------------------------------------------  118 (224)
Q Consensus        89 --d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~-----------------------------------------------  118 (224)
                        -++|++.|+++| .-++.+.+|...+.++..                                               
T Consensus       127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de  206 (473)
T KOG3905|consen  127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE  206 (473)
T ss_pred             cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence              358889999998 445777777665554410                                               


Q ss_pred             --------------CCCcEEEEEeCCCC----CCCCCCC-------HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382          119 --------------KNIVIMLIGNKCDL----GSLRAVP-------TEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus       119 --------------~~~p~ilv~nK~D~----~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                                    -++|+++|++|+|.    +.+.+..       ...++.||.++|+.++.+|+++..|++-+...|.
T Consensus       207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence                          15899999999998    2222211       2347789999999999999999999999999998


Q ss_pred             HHHHHH
Q 027382          174 TEIYRI  179 (224)
Q Consensus       174 ~~i~~~  179 (224)
                      +.++..
T Consensus       287 hr~yG~  292 (473)
T KOG3905|consen  287 HRSYGF  292 (473)
T ss_pred             HHhcCc
Confidence            887654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.49  E-value=1.9e-13  Score=122.90  Aligned_cols=126  Identities=18%  Similarity=0.187  Sum_probs=88.3

Q ss_pred             cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------C---CcceeeEEEEEEEC---------
Q 027382            4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------A---TIGVEFQTKTLSID---------   60 (224)
Q Consensus         4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~~~~~~~---------   60 (224)
                      +...++++.+...+|+|+|+.++|||||+++|+...-.....           +   ..|.++....+.+.         
T Consensus         8 ~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~   87 (843)
T PLN00116          8 ELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLK   87 (843)
T ss_pred             HHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccc
Confidence            344567788899999999999999999999998644210000           0   01233332222221         


Q ss_pred             -------CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           61 -------HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        61 -------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                             ...+.+.++||||+..|.......++.+|++|+|+|+.+.-......-| ..+..   .++|+++++||+|+.
T Consensus        88 ~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         88 DFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence                   2367889999999999988889999999999999999975444433333 22322   368999999999985

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.48  E-value=4.3e-13  Score=119.21  Aligned_cols=128  Identities=14%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             CCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------C---CcceeeEEEEE----EECCeE
Q 027382            2 SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------A---TIGVEFQTKTL----SIDHKT   63 (224)
Q Consensus         2 ~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~~~~----~~~~~~   63 (224)
                      .+.+..++.+.+...+|+++|+.++|||||+++|+...-.....           +   ..++++....+    ..++..
T Consensus         7 ~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~   86 (731)
T PRK07560          7 VEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKE   86 (731)
T ss_pred             HHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCc
Confidence            34455667778888899999999999999999998632111100           0   01222222211    124457


Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      +.+.++||||+..+.......++.+|++++|+|+...........| ....+.   +.|.++++||+|+.
T Consensus        87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence            8899999999998888888899999999999999875333322223 222222   46789999999975

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.48  E-value=3.7e-13  Score=110.30  Aligned_cols=165  Identities=18%  Similarity=0.171  Sum_probs=114.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hhh-----hH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----RAV-----TS   82 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~-----~~   82 (224)
                      -+..-.++|+|.|++|||||++.+........+.++.+.....-  .++.....++++||||.-..    +..     ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            45666789999999999999999998887777666543333322  23456778999999992111    111     11


Q ss_pred             hHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHHcCCeEEEE
Q 027382           83 AYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED---AQEFAQRENLFFMET  157 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (224)
                      ...+--.+|+|+.|++.  ..|......++..++.... +.|+|+|+||+|+.....++.+.   +......-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            12222346999999987  4566666667766665543 79999999999986544444432   334444455899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      |..+.+|+-++-....+.++..
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHH
Confidence            9999999998888777766544

>smart00275 G_alpha G protein alpha subunit

Probab=99.47  E-value=2e-12  Score=105.02  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLDELRGHA-DKNIVIMLIGNK  129 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK  129 (224)
                      .....+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.+.. -.+.|+++++||
T Consensus       181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK  260 (342)
T smart00275      181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK  260 (342)
T ss_pred             ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence            3456789999999999999999999999999999999973          24555555555554432 257999999999


Q ss_pred             CCCCCC--------------C-CCCHHHHHHHHHH-----c------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          130 CDLGSL--------------R-AVPTEDAQEFAQR-----E------NLFFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       130 ~D~~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      .|+..+              . ..+.+.+..|...     .      .+..+.++|.+-.++..+|+.+.+.|.+...
T Consensus       261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            997311              0 1233444444322     1      1345778899999999999999988877653

Subunit of G proteins that contains the guanine nucleotide binding site

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.47  E-value=9e-13  Score=103.88  Aligned_cols=152  Identities=24%  Similarity=0.232  Sum_probs=109.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC----------Cc---------------------cCCcceeeEEEEEEEC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV----------DS---------------------KATIGVEFQTKTLSID   60 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~   60 (224)
                      ....++.+.+|+..=||||||-+|+......          .+                     ..-.|+++......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            4567899999999999999999998743211          00                     0112777777777777


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      ....+|.+-|||||+.|...+..-..-||++|+++|+-.. -+++.++ ...+....+ =..+++.+||+||.+..+...
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            8889999999999999999888889999999999999542 2222222 222222222 245899999999987655444


Q ss_pred             HH----HHHHHHHcCC---eEEEEcCCCCCCHH
Q 027382          141 ED----AQEFAQRENL---FFMETSALEATNVE  166 (224)
Q Consensus       141 ~~----~~~~~~~~~~---~~~~~s~~~~~~v~  166 (224)
                      ++    ...|+..+++   .++++||..|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            43    3467777775   59999999998764

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.47  E-value=7.8e-13  Score=100.86  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=84.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCccee--eEEEEEEECCeEEEEEEEeCCChh-------hhhhhh----H
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVE--FQTKTLSIDHKTVKAQIWDTAGQE-------RYRAVT----S   82 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~----~   82 (224)
                      .+|+|+|..|+||||++|.+++.............+  .......+  ....+.++||||-.       ......    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~--~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV--DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE--TTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee--cceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            489999999999999999999988754432222222  22222334  44678999999921       111111    1


Q ss_pred             hHhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC----C---HHHHHHHHHHcCCeE
Q 027382           83 AYYRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV----P---TEDAQEFAQRENLFF  154 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~---~~~~~~~~~~~~~~~  154 (224)
                      ...++.++++||+.+... +.-..+.+++..+.... .-..++|+.|..|......+    .   ...++++.++.+-.|
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~  157 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY  157 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence            234578999999999832 11222222332222111 12347888888876443321    0   123556667777778


Q ss_pred             EEEcCC------CCCCHHHHHHHHHHHH
Q 027382          155 METSAL------EATNVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~------~~~~v~~~~~~i~~~i  176 (224)
                      +.++.+      ....+.++|..+-+.+
T Consensus       158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv  185 (212)
T PF04548_consen  158 HVFNNKTKDKEKDESQVSELLEKIEEMV  185 (212)
T ss_dssp             EECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccchhhhHHHHHHHHHHHHHHH
Confidence            887766      2234555555544433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=99.44  E-value=3.7e-12  Score=104.26  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeC
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDT   71 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~   71 (224)
                      .+.+.....++|+++|.|+||||||+|+|.+........|..+.......+.+...               ...+.++|+
T Consensus        13 ~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt   92 (390)
T PTZ00258         13 VLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDI   92 (390)
T ss_pred             hhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence            34456678899999999999999999999887665444444333333333333211               335899999


Q ss_pred             CChh-------hhhhhhHhHhcCCCEEEEEEeCC
Q 027382           72 AGQE-------RYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        72 ~G~~-------~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                      ||-.       .........++.+|++++|+|..
T Consensus        93 pGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         93 AGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            9932       12223344578899999999974

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.43  E-value=9.7e-12  Score=112.47  Aligned_cols=142  Identities=18%  Similarity=0.191  Sum_probs=94.5

Q ss_pred             CHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeE----------------EEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           27 GKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT----------------VKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        27 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +||||+.++.+..........++.++....+..+...                -.+.+|||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999887765544444444444444433110                128999999999998888888889999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC----------------HHHHH----HH-
Q 027382           91 AMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP----------------TEDAQ----EF-  146 (224)
Q Consensus        91 vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----------------~~~~~----~~-  146 (224)
                      +++|+|+++   +.+.+.+    ..+...   ++|+++++||+|+.......                .+++.    +. 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I----~~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI----NILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH----HHHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   3333332    223332   58999999999985321100                11111    01 


Q ss_pred             --HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          147 --AQRE---------------NLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       147 --~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                        ..++               .++++++||++|+|+++++..+...
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence              1111               3478999999999999999877643

>PTZ00416 elongation factor 2; Provisional

Probab=99.43  E-value=6.8e-13  Score=119.18  Aligned_cols=125  Identities=19%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEE--EEEEC--------
Q 027382            5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTK--TLSID--------   60 (224)
Q Consensus         5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~~~--------   60 (224)
                      .+.++++.+...+|+++|+.++|||||+++|+...-.....              ...|+++...  ...+.        
T Consensus         9 ~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~   88 (836)
T PTZ00416          9 IREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDD   88 (836)
T ss_pred             HHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccC
Confidence            34456667788899999999999999999998733211000              0012222222  22222        


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .....+.++||||+..+.......++.+|++|+|+|+.+.-.... +..+..+.+.   ++|+++++||+|+.
T Consensus        89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence            126779999999999998888889999999999999987533332 3333444332   58999999999985

>TIGR00101 ureG urease accessory protein UreG

Probab=99.42  E-value=2.9e-12  Score=96.54  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=66.1

Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDA  143 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  143 (224)
                      ....++++.|......... .  -+|.+|.|+|+.+.+....  .+...+      ...-++++||+|+.+......+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            5667888888432222222 2  2688999999987655322  111112      112388999999974323334444


Q ss_pred             HHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          144 QEFAQR--ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       144 ~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .+..+.  .+.+++++|+++|+|++++|+++.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            555554  457899999999999999999988654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=9.3e-13  Score=102.61  Aligned_cols=162  Identities=21%  Similarity=0.159  Sum_probs=111.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc---cCCcce------------------eeEEEEEEEC------CeEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS---KATIGV------------------EFQTKTLSID------HKTVK   65 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~------------------~~~~~~~~~~------~~~~~   65 (224)
                      ...++|.++|+...|||||..+|.+--....+   ...+.+                  ..+...-.+.      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            46899999999999999999999872211000   000000                  0011111111      22367


Q ss_pred             EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHH
Q 027382           66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDA  143 (224)
Q Consensus        66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~  143 (224)
                      +.++|.||++-.-+..-.-..-.|++++|++++.+..-.+.++.+..+.=..  -..++++-||+|+.....  .+++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8899999999776666666667899999999998766666666555543322  244899999999964322  355677


Q ss_pred             HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          144 QEFAQR---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       144 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++|.+-   .++|++++||..+.|++.+++.|...+
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            777765   457899999999999999988887776

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.40  E-value=7.5e-12  Score=101.55  Aligned_cols=153  Identities=17%  Similarity=0.227  Sum_probs=97.7

Q ss_pred             CcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcC----CCCC----------CccCCcc---eeeEEE-------EEE
Q 027382            3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARN----EFSV----------DSKATIG---VEFQTK-------TLS   58 (224)
Q Consensus         3 ~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~----~~~~----------~~~~~~~---~~~~~~-------~~~   58 (224)
                      |.+++++++....+-|+|+|+.++|||||+|+|.+.    ....          -.....|   +|...+       .+.
T Consensus         5 ~iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~   84 (492)
T TIGR02836         5 DIYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN   84 (492)
T ss_pred             hHHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe
Confidence            567888999999999999999999999999999987    3320          0111113   222222       222


Q ss_pred             E-CCeEEEEEEEeCCChhhh--------hh---------------------hhHhHhc-CCCEEEEEE-eCC--C--hhh
Q 027382           59 I-DHKTVKAQIWDTAGQERY--------RA---------------------VTSAYYR-GAVGAMLVY-DMT--K--RQS  102 (224)
Q Consensus        59 ~-~~~~~~~~l~D~~G~~~~--------~~---------------------~~~~~~~-~~d~vi~v~-d~~--~--~~s  102 (224)
                      . ++....+.++||+|-...        ..                     -....+. .+|..|+|. |.+  +  ++.
T Consensus        85 ~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~  164 (492)
T TIGR02836        85 INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRED  164 (492)
T ss_pred             ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccccc
Confidence            2 355678999999992211        11                     0334455 899999888 664  1  233


Q ss_pred             HHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382          103 FDH-MARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus       103 ~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      +.. -.+++..+++.   ++|+++++|+.|....  ...+..+++..+++.+++.+|+.
T Consensus       165 y~~aEe~~i~eLk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       165 YVEAEERVIEELKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             chHHHHHHHHHHHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence            333 34566666654   7999999999994321  13444556666677776666653

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.38  E-value=1.6e-11  Score=102.98  Aligned_cols=164  Identities=20%  Similarity=0.346  Sum_probs=111.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhHhcCC--
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID--HKTVKAQIWDTAGQERYRAVTSAYYRGA--   88 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~--   88 (224)
                      ...-.|+|+|..++||||||.+|.+..   .+.++.+..+....+.-.  ....++.+|...|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345689999999999999999997654   234444544444433222  2335689999988766766665555422  


Q ss_pred             --CEEEEEEeCCChhhH-HHHHHHHHHHHhcC------------------------------------------------
Q 027382           89 --VGAMLVYDMTKRQSF-DHMARWLDELRGHA------------------------------------------------  117 (224)
Q Consensus        89 --d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------  117 (224)
                        -++|+|+|.+.|..+ +.+..|+..++++.                                                
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              358899999987553 45555543332220                                                


Q ss_pred             --------------CCCCcEEEEEeCCCCCC----CCC-------CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382          118 --------------DKNIVIMLIGNKCDLGS----LRA-------VPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus       118 --------------~~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                                    +-++|++||++|+|...    +..       .-.+.++.||..+|+.++.+|++...+++-++..|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                          01379999999999621    111       11234778899999999999999999999888888


Q ss_pred             HHHHHHH
Q 027382          173 LTEIYRI  179 (224)
Q Consensus       173 ~~~i~~~  179 (224)
                      .+.++..
T Consensus       260 ~h~l~~~  266 (472)
T PF05783_consen  260 LHRLYGF  266 (472)
T ss_pred             HHHhccC
Confidence            8777654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=1.1e-11  Score=86.16  Aligned_cols=114  Identities=32%  Similarity=0.347  Sum_probs=82.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777654443 3322                           333345567788999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      ++.++.++++.+  |...+....+.++|.++++||.|+.+...+..++..        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999988765  776666555567889999999998543333333333        34567788888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=2.6e-12  Score=99.91  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF  153 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (224)
                      +++..+.+.+++++|++++|||++++. ++..+.+|+..+..   .++|+++|+||+|+.+...+..+.++.+ ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            566777888999999999999999877 89999999987654   3699999999999965444333444444 457889


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ++++||++|.|++++|..+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.4e-11  Score=107.52  Aligned_cols=119  Identities=16%  Similarity=0.192  Sum_probs=93.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc---c-------------CCcceeeEEEEEEECCe-EEEEEEEeCCCh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS---K-------------ATIGVEFQTKTLSIDHK-TVKAQIWDTAGQ   74 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~   74 (224)
                      .+..-+|.++|+..+|||||..+|+...-....   .             ...|+++......+.+. ++.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            677889999999999999999999874322111   0             11277777777777777 599999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      -+|.......++-+|++++|+|+.+.-....-.-|....+.    ++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccc
Confidence            99999999999999999999999986555544445444433    799999999999854

>PRK13768 GTPase; Provisional

Probab=99.36  E-value=8e-12  Score=97.67  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=68.1

Q ss_pred             EEEEEeCCChhhh---hhhhHhHhc---C--CCEEEEEEeCCChhhHHHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           65 KAQIWDTAGQERY---RAVTSAYYR---G--AVGAMLVYDMTKRQSFDHM--ARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        65 ~~~l~D~~G~~~~---~~~~~~~~~---~--~d~vi~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .+.+||+||+.+.   +..+..+++   .  .+++++|+|+.........  ..|+...... ..+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6899999997653   223322322   2  8999999999754322222  1222222211 13689999999999865


Q ss_pred             CCCCCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          135 LRAVPTEDAQE----------------------------FAQREN--LFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ....  ++...                            .....+  .+++++|++++.|++++++++.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3221  11111                            122223  4689999999999999999887665

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.35  E-value=1.1e-11  Score=94.20  Aligned_cols=152  Identities=11%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--C----------CccCCcceeeEEEEEEE-C-------------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS--V----------DSKATIGVEFQTKTLSI-D-------------------   60 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~--~----------~~~~~~~~~~~~~~~~~-~-------------------   60 (224)
                      ..+..|+++|+.|+|||||+++++.....  .          ..+...-.......+.+ +                   
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            35788999999999999999999864110  0          00000000000000000 0                   


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      .....+.++|+.|.-...   ..+....+..+.|+|+.+.+...  ..... .     ...|.++++||+|+.+......
T Consensus       100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~-~-----~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYPG-M-----FKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhHh-H-----HhhCCEEEEEHHHccccchhhH
Confidence            012356677777721000   01112234455677776533211  11111 1     1356799999999965333234


Q ss_pred             HHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          141 EDAQEFAQREN--LFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       141 ~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      .+..+..++.+  .+++++|++++.|++++|+++.+.
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44555555543  789999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=2.4e-11  Score=97.32  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             eEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh-------HHHHHHHHHHHHhcCC----CC
Q 027382           52 FQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-------FDHMARWLDELRGHAD----KN  120 (224)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~  120 (224)
                      .....+.+......+.++|.+||...+.-|.+++.+++++|||+++++-+.       ...+.+-+..+...++    .+
T Consensus       183 ~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~  262 (354)
T KOG0082|consen  183 TGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN  262 (354)
T ss_pred             CCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence            333444455566889999999999999999999999999999999987322       2233333333333332    67


Q ss_pred             CcEEEEEeCCCCCCC--------------C-CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          121 IVIMLIGNKCDLGSL--------------R-AVPTEDAQEFAQR----------ENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       121 ~p~ilv~nK~D~~~~--------------~-~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      .++++++||.|+-++              . .-..+++..+...          ..+.++.+.|.+-.+|+.+|..+.+.
T Consensus       263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~  342 (354)
T KOG0082|consen  263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT  342 (354)
T ss_pred             CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence            999999999998321              1 1234455444322          12446677899999999999999999


Q ss_pred             HHHHHhc
Q 027382          176 IYRIISK  182 (224)
Q Consensus       176 i~~~~~~  182 (224)
                      |.+...+
T Consensus       343 Ii~~nlk  349 (354)
T KOG0082|consen  343 IIQNNLK  349 (354)
T ss_pred             HHHHHHH
Confidence            8776543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.4e-11  Score=93.75  Aligned_cols=175  Identities=17%  Similarity=0.131  Sum_probs=116.7

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------C-CCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-------------S-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      .+.....-+||..+|+..-|||||..++..--.             . .......|+++....+.+......+..+|+||
T Consensus         5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG   84 (394)
T COG0050           5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG   84 (394)
T ss_pred             hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence            455677889999999999999999887754110             0 11123447888888888888888999999999


Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHH
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRA---VPTEDAQEFAQR  149 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~  149 (224)
                      +..|-.....-...+|+.|+|+++++..-- +.++.+-..++.   .+| +++++||+|+.+..+   .-..+++++..+
T Consensus        85 HaDYvKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          85 HADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             hHHHHHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            999988888888899999999999983322 233322222322   454 788899999976432   223457788888


Q ss_pred             cCC-----eEEEEcCCCC-CCHHHHHHHHHHHHHHHHhcccCCc
Q 027382          150 ENL-----FFMETSALEA-TNVETAFLTVLTEIYRIISKKSLTA  187 (224)
Q Consensus       150 ~~~-----~~~~~s~~~~-~~v~~~~~~i~~~i~~~~~~~~~~~  187 (224)
                      +++     |++.-|+... +|-.. +..-+..++........++
T Consensus       161 y~f~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~yip~P  203 (394)
T COG0050         161 YGFPGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSYIPTP  203 (394)
T ss_pred             cCCCCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhcCCCC
Confidence            876     4566665432 22222 3333444555544444443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.33  E-value=1.1e-10  Score=94.55  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh-----
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE-----   75 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~-----   75 (224)
                      ++|+++|.|+||||||+|+|.+........|..+.+...-.+.+...               ...+.++|+||-.     
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            68999999999999999999997754333333232222222333221               1358999999932     


Q ss_pred             --hhhhhhHhHhcCCCEEEEEEeCC
Q 027382           76 --RYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        76 --~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                        .........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              12223344468999999999984

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.2e-11  Score=100.04  Aligned_cols=138  Identities=18%  Similarity=0.216  Sum_probs=99.8

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------------CCcceeeEEEEEEECCeEEEEEEE
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------------ATIGVEFQTKTLSIDHKTVKAQIW   69 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~   69 (224)
                      +...+.-..+|+-+|.+|||||-.+|+--.-.....                    ...|+.+.+..+.+++.+..+++.
T Consensus         7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL   86 (528)
T COG4108           7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL   86 (528)
T ss_pred             HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence            334455567899999999999999986532211111                    112788888888889999999999


Q ss_pred             eCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382           70 DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR  149 (224)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~  149 (224)
                      ||||++.+..-....+..+|.++.|+|+...-. ....++++.++-   .++|++-++||.|.+..  .+.+.+.+.-++
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~  160 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEE  160 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHH
Confidence            999999998888888999999999999986322 223344444443   37999999999998642  235556666666


Q ss_pred             cCCe
Q 027382          150 ENLF  153 (224)
Q Consensus       150 ~~~~  153 (224)
                      +++.
T Consensus       161 L~i~  164 (528)
T COG4108         161 LGIQ  164 (528)
T ss_pred             hCcc
Confidence            6543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.4e-10  Score=91.54  Aligned_cols=166  Identities=15%  Similarity=0.149  Sum_probs=100.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC----CCCCccC-CcceeeEE--EEEEE-------CCeEEEEEEEeCCChhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNE----FSVDSKA-TIGVEFQT--KTLSI-------DHKTVKAQIWDTAGQER   76 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~-~~~~~~~~--~~~~~-------~~~~~~~~l~D~~G~~~   76 (224)
                      ..+..+++.++|+..+|||||.++|..-.    ++..... ..|++...  ..+.+       .+...++.++|+||+..
T Consensus         3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas   82 (522)
T KOG0461|consen    3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS   82 (522)
T ss_pred             CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence            34567999999999999999999997532    2111111 11222221  11111       24567889999999876


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------  149 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------  149 (224)
                      .-..........|..++|+|+...-.-+.++-++ ..+.     -...++|+||+|...+.+. ...+++.+++      
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr-~ski~k~~kk~~KtLe  156 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQR-ASKIEKSAKKVRKTLE  156 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhh-hhHHHHHHHHHHHHHH
Confidence            6555555556679999999998755544444432 2222     1236788899887543221 1222222222      


Q ss_pred             -----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382          150 -----ENLFFMETSALEATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       150 -----~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                           -+.|++++|++.|.--.+.+..+.+.+.++...
T Consensus       157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence                 136899999999955555555555555555443

>cd01882 BMS1 Bms1

Probab=99.32  E-value=5.3e-11  Score=91.55  Aligned_cols=141  Identities=15%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ......|+++|.+|+|||||++.+.+...........|.    ..+ .......+.++||||..   .......+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence            345678999999999999999999875321111111121    111 22356678999999864   2233446889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCCCCCCC---HHHHHH-HHHH--cCCeEEEEcCCCCCC
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCDLGSLRAVP---TEDAQE-FAQR--ENLFFMETSALEATN  164 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~s~~~~~~  164 (224)
                      ++|+|++....... ...+..+...   +.|. ++|+||+|+......-   ..++++ +..+  .+.+++.+||++...
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            99999986433222 2333444332   4664 4599999985322110   112222 2222  235799999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.32  E-value=3.2e-11  Score=97.05  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=68.3

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PT  140 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~  140 (224)
                      .+.+.++||+|.....   ......+|.+++|.+...++.+.....   .+.+     ..-++|+||+|+.+....  ..
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence            4778999999965222   224667999999987555555544332   1111     224899999998643211  11


Q ss_pred             HHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          141 EDAQEFAQR-------ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      .+++.....       +..+++.+|++++.|++++++.+.+.+...
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            223322222       225799999999999999999998876533

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=6.5e-12  Score=104.79  Aligned_cols=155  Identities=21%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDH   61 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (224)
                      +....+.++++|+..+|||||+-+|+..--..                             ......|.+.......++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            34477899999999999999999987632111                             1112236777777777778


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHH-------HHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-------MARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ....+.++|.||+..|......-...+|+.++|+|++- ..|+.       .++....++.. + -..+++++||.|+.+
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L-g-i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL-G-ISQLIVAINKMDLVS  329 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-C-cceEEEEeecccccC
Confidence            88899999999999998888888889999999999975 22222       22222223322 2 244788999999987


Q ss_pred             CCCCCHHHHH----HHH-HHcC-----CeEEEEcCCCCCCHHHH
Q 027382          135 LRAVPTEDAQ----EFA-QREN-----LFFMETSALEATNVETA  168 (224)
Q Consensus       135 ~~~~~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~v~~~  168 (224)
                      ..+...++++    .|. +..|     +.|+++|+.+|+|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            5555555544    333 2223     46999999999986544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=8.2e-11  Score=86.38  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             EEEEeCCChh----hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           66 AQIWDTAGQE----RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        66 ~~l~D~~G~~----~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      +.|+|+||-.    .....+..+++.+|++|+|.+++...+-.....+.......   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            7899999943    23466788889999999999999866655555565555543   23388888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.29  E-value=7.7e-13  Score=102.21  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             EEEEEeCCChhhhhhhhHhHh--------cCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           65 KAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      .+.++|||||.++...+....        ...-++++++|..-... ...+..++-.+.-....+.|.+.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999998876665554        44567888999764322 222222222222111237999999999999641


Q ss_pred             CC-------CC------------HHHHHHHHHH---cC-C-eEEEEcCCCCCCHHHHHHHHHHH
Q 027382          136 RA-------VP------------TEDAQEFAQR---EN-L-FFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       136 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ..       ..            ....++.+.-   .+ . .++++|+.+++++.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            10       00            0001112221   22 3 69999999999999998876543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.28  E-value=5.3e-12  Score=94.09  Aligned_cols=145  Identities=19%  Similarity=0.289  Sum_probs=90.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhh-----hhhhHhHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERY-----RAVTSAYYRG   87 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~-----~~~~~~~~~~   87 (224)
                      .-||+++|.+|+||||+-..++.+...- ...+  |.++....-.+.. +...+.+||++|++.+     .......+.+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rl--g~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRL--GATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhcc--CCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            4589999999999999988877543221 1122  2323333322322 3478899999998854     3345667899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHH----HHHHHHHcCCeEEEEc
Q 027382           88 AVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCDLGSLRA--VPTED----AQEFAQRENLFFMETS  158 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~----~~~~~~~~~~~~~~~s  158 (224)
                      .+++++|||++..+-..++..+   ++.+.+.. +...+.+..+|.|+.....  ...++    +..+....++.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            9999999999986655554443   33444433 3566888899999954322  11222    2222233345577777


Q ss_pred             CCCC
Q 027382          159 ALEA  162 (224)
Q Consensus       159 ~~~~  162 (224)
                      ..+.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            7644

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.28  E-value=1.5e-11  Score=89.83  Aligned_cols=148  Identities=16%  Similarity=0.117  Sum_probs=88.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC-cceeeEE-------------EEEEE--------------------
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT-IGVEFQT-------------KTLSI--------------------   59 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~-------------~~~~~--------------------   59 (224)
                      ..+.|.|.|++|||||+|+.+++..-... |... +..+.++             ..+.+                    
T Consensus        12 ~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l   90 (202)
T COG0378          12 PMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL   90 (202)
T ss_pred             ceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence            36999999999999999999987533211 1111 0011111             00000                    


Q ss_pred             --CCeEEEEEEEeCCChhhhhhhhHhHhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCC
Q 027382           60 --DHKTVKAQIWDTAGQERYRAVTSAYYRGAV-GAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        60 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~  135 (224)
                        ......+.+++..|+  ......  +.-.| .-|+|+|.+..+-..         ++..+ -...=++|+||.|+.+.
T Consensus        91 ~~~~~~~Dll~iEs~GN--L~~~~s--p~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~  157 (202)
T COG0378          91 VLDFPDLDLLFIESVGN--LVCPFS--PDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPY  157 (202)
T ss_pred             hhcCCcCCEEEEecCcc--eecccC--cchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHH
Confidence              011245566666661  111111  11123 667777777643222         11011 01134889999999877


Q ss_pred             CCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          136 RAVPTEDAQEFAQREN--LFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ...+.+.+.+-+++.+  .+++++|.++|+|+++++.++...
T Consensus       158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            7777788888877754  789999999999999998887654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.9e-11  Score=103.31  Aligned_cols=163  Identities=18%  Similarity=0.205  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------------HKTVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~~~~   80 (224)
                      =+||+|+..+|||-|+..+.+.+........+...+....+...                ..---+.++||||++.|..+
T Consensus       477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl  556 (1064)
T KOG1144|consen  477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL  556 (1064)
T ss_pred             eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence            38999999999999999999876655444433222222222111                11123789999999999999


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC------CC----------CHHH--
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR------AV----------PTED--  142 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~----------~~~~--  142 (224)
                      .......||.+|+|+|+...-.-. ...-++.++..   +.|+|+.+||+|..-..      .+          ...+  
T Consensus       557 RsrgsslC~~aIlvvdImhGlepq-tiESi~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~  632 (1064)
T KOG1144|consen  557 RSRGSSLCDLAILVVDIMHGLEPQ-TIESINLLRMR---KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK  632 (1064)
T ss_pred             hhccccccceEEEEeehhccCCcc-hhHHHHHHHhc---CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence            999999999999999997521111 12233444443   79999999999973211      00          0011  


Q ss_pred             ------HHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382          143 ------AQEFAQR-EN-------------LFFMETSALEATNVETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       143 ------~~~~~~~-~~-------------~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~  183 (224)
                            +.+|+.. ++             +.++++||.+|+||.+++.+|++.....+..+
T Consensus       633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                  1122221 11             13678999999999999999998776665543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.28  E-value=2.2e-10  Score=90.68  Aligned_cols=135  Identities=16%  Similarity=0.286  Sum_probs=74.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------cCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------   76 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------   76 (224)
                      ..++|+|+|.+|+|||||||.|++.......          ..+.........+.-++..+.+.++||||-..       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999996543321          11112222333334467889999999999110       


Q ss_pred             hh-------hhhHhHh-------------cCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           77 YR-------AVTSAYY-------------RGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        77 ~~-------~~~~~~~-------------~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      +.       .....++             ...|+++|+++++. ..+.. -...+..+.+    .+++|-|+.|+|..  
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~l--  155 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK----RVNVIPVIAKADTL--  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT----TSEEEEEESTGGGS--
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc----cccEEeEEeccccc--
Confidence            00       0001111             36789999999876 22221 2234455544    57799999999974  


Q ss_pred             CCCCHHHHHH-------HHHHcCCeEEEEc
Q 027382          136 RAVPTEDAQE-------FAQRENLFFMETS  158 (224)
Q Consensus       136 ~~~~~~~~~~-------~~~~~~~~~~~~s  158 (224)
                         +.+++..       -...+++.++...
T Consensus       156 ---t~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  156 ---TPEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             ----HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             ---CHHHHHHHHHHHHHHHHHcCceeeccc
Confidence               3444433       3445677665543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.6e-11  Score=102.55  Aligned_cols=124  Identities=22%  Similarity=0.276  Sum_probs=91.5

Q ss_pred             ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---------------cceeeEEEEE-----EECCeEE
Q 027382            5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---------------IGVEFQTKTL-----SIDHKTV   64 (224)
Q Consensus         5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~-----~~~~~~~   64 (224)
                      +-.++...+...+|+++|+-++|||+|+..|....-+..+...               .|.++.....     +.+++.+
T Consensus       118 l~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~  197 (971)
T KOG0468|consen  118 LAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSY  197 (971)
T ss_pred             HHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCcee
Confidence            3456778899999999999999999999999876543321111               1333322222     2256788


Q ss_pred             EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                      -++++||||+-.+.......++.+|++++|+|+.+.-.+..- +.++...   ..+.|+++|+||.|.
T Consensus       198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai---q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI---QNRLPIVVVINKVDR  261 (971)
T ss_pred             eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH---hccCcEEEEEehhHH
Confidence            999999999999988899999999999999999986665533 3332222   237999999999996

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.26  E-value=3.7e-11  Score=91.95  Aligned_cols=171  Identities=15%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---Cc----cCCcceeeEEEEEEE-------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV---DS----KATIGVEFQTKTLSI-------------------------   59 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~-------------------------   59 (224)
                      .+.++-|+|+|..|||||||+++|.......   .|    +|.+..--+...+++                         
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            4567789999999999999999997632211   11    111100000000100                         


Q ss_pred             ----------------CCeEEEEEEEeCCChhhh------hhhhHhHhc--CCCEEEEEEeCCChhh-HHHHHHHHHHHH
Q 027382           60 ----------------DHKTVKAQIWDTAGQERY------RAVTSAYYR--GAVGAMLVYDMTKRQS-FDHMARWLDELR  114 (224)
Q Consensus        60 ----------------~~~~~~~~l~D~~G~~~~------~~~~~~~~~--~~d~vi~v~d~~~~~s-~~~~~~~~~~~~  114 (224)
                                      ......+.++||||+-+.      .+++...+.  ..-++++|+|.....+ ...+...+-...
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                            022466889999996543      222222222  2345777887654222 122222222222


Q ss_pred             hcCCCCCcEEEEEeCCCCCCCCCC-----CHHHHHHHHH--------------------H-cCCeEEEEcCCCCCCHHHH
Q 027382          115 GHADKNIVIMLIGNKCDLGSLRAV-----PTEDAQEFAQ--------------------R-ENLFFMETSALEATNVETA  168 (224)
Q Consensus       115 ~~~~~~~p~ilv~nK~D~~~~~~~-----~~~~~~~~~~--------------------~-~~~~~~~~s~~~~~~v~~~  168 (224)
                      -.+...+|+|++.||.|+.+....     +.+..++..+                    . .++..+.+|+.+|.|.+++
T Consensus       176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf  255 (366)
T KOG1532|consen  176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF  255 (366)
T ss_pred             HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence            223347999999999999653210     0111111111                    1 2356889999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 027382          169 FLTVLTEIYRIISK  182 (224)
Q Consensus       169 ~~~i~~~i~~~~~~  182 (224)
                      |..+-..+-+....
T Consensus       256 ~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  256 FTAVDESVDEYEEE  269 (366)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998877555433

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.23  E-value=6e-11  Score=96.26  Aligned_cols=157  Identities=11%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCC--cceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh-----
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKAT--IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA-----   83 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~-----   83 (224)
                      .+..++|+|+|.+|+|||||||+|.+-... +...++  +.++.....+.. -..-.+.+||.||..........     
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999999773322 222221  112222222211 12225899999994433222222     


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCCCH----HHHHHHHHH--
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLG-------SLRAVPT----EDAQEFAQR--  149 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~-------~~~~~~~----~~~~~~~~~--  149 (224)
                      -+...|.+|++.+-.    +....- ....+.+.   +.|+++|-+|+|..       ..+..+.    +++++.+.+  
T Consensus       111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            356789777766532    222222 22333332   68899999999961       1122232    233333333  


Q ss_pred             --cCC---eEEEEcCCCCCC--HHHHHHHHHHHH
Q 027382          150 --ENL---FFMETSALEATN--VETAFLTVLTEI  176 (224)
Q Consensus       150 --~~~---~~~~~s~~~~~~--v~~~~~~i~~~i  176 (224)
                        .++   ++|-+|..+-..  +..+.+.+...+
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence              233   488889877544  555555555444

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.23  E-value=5e-11  Score=95.59  Aligned_cols=160  Identities=18%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCC----CC-------CCccCCcc----e-----------eeEEEEEEE-
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNE----FS-------VDSKATIG----V-----------EFQTKTLSI-   59 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~~-------~~~~~~~~----~-----------~~~~~~~~~-   59 (224)
                      .+.........|+|+|++|+|||||++.+....    ..       +.+..+.+    .           ......... 
T Consensus        26 ~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (300)
T TIGR00750        26 RIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTR  105 (300)
T ss_pred             hCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcc
Confidence            344455667888999999999999999976521    00       00100000    0           000000000 


Q ss_pred             -----------------CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc
Q 027382           60 -----------------DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV  122 (224)
Q Consensus        60 -----------------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  122 (224)
                                       +...+.+.++||+|....   ....+..+|.++++....   +.+++..+...+.     ..|
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~  174 (300)
T TIGR00750       106 GHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIA  174 (300)
T ss_pred             ccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhc
Confidence                             112578899999985422   223566788888885443   3333333333332     467


Q ss_pred             EEEEEeCCCCCCCCCCCH--H----HHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          123 IMLIGNKCDLGSLRAVPT--E----DAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       123 ~ilv~nK~D~~~~~~~~~--~----~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      .++++||+|+........  .    ....+..+   +..+++++|++++.|++++++++.+...
T Consensus       175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            799999999864321100  0    01111111   2246899999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.20  E-value=5.7e-10  Score=95.61  Aligned_cols=123  Identities=12%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------hhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----------RAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~   80 (224)
                      +-...++|+|+|.+|+||||++|.|++...........+++.. ...........+.++||||-...          ...
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHH
Confidence            3456789999999999999999999997643332211122221 12211123467999999994422          111


Q ss_pred             hHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCC
Q 027382           81 TSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLGS  134 (224)
Q Consensus        81 ~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~  134 (224)
                      ...++.  .+|++|||..++.......-..+++.+.+..+.  -..+|||.|+.|...
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            222333  589999998876432221222444444444431  244788899999753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=4.8e-10  Score=86.40  Aligned_cols=68  Identities=10%  Similarity=0.074  Sum_probs=43.5

Q ss_pred             EEEEEEeCCChh-------------hhhhhhHhHhc-CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 027382           64 VKAQIWDTAGQE-------------RYRAVTSAYYR-GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK  129 (224)
Q Consensus        64 ~~~~l~D~~G~~-------------~~~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK  129 (224)
                      ..+.++|+||-.             ....+...+++ ..+.+++|+|+...-.-....++...+..   ...++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            468899999942             12345666777 44689999988652222222233333332   36889999999


Q ss_pred             CCCCC
Q 027382          130 CDLGS  134 (224)
Q Consensus       130 ~D~~~  134 (224)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.19  E-value=7.8e-10  Score=83.80  Aligned_cols=155  Identities=22%  Similarity=0.195  Sum_probs=100.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhHh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAVTSAYY   85 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~   85 (224)
                      ...-+|+++|.|.+|||||+..+..-........+  ++.....-.+.+.+-.+++.|.||.-+-       ........
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF--TTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEF--TTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceee--eEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence            34568999999999999999999875543332222  2222222223445667899999993221       33345567


Q ss_pred             cCCCEEEEEEeCCChhhHHH-HHHHHHHHHhc------------------------------------------------
Q 027382           86 RGAVGAMLVYDMTKRQSFDH-MARWLDELRGH------------------------------------------------  116 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~------------------------------------------------  116 (224)
                      +.||++++|.|++..+.-.. +++.+..+.-.                                                
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence            88999999999987554432 22222221100                                                


Q ss_pred             -----------------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          117 -----------------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       117 -----------------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                                       ...-++++.|-||+|.     ++.+++.+++...+--+  +|+....|++.+++.+.+.+
T Consensus       218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             EEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHHh
Confidence                             0112567777888884     57888999988877544  56666789998888888765

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.18  E-value=3.7e-10  Score=90.05  Aligned_cols=166  Identities=14%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--   77 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--   77 (224)
                      .+....++|+++|+.|+|||||+|.|++......          ..++..+......+.-++..+.+.++||||-.+.  
T Consensus        18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id   97 (373)
T COG5019          18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID   97 (373)
T ss_pred             HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence            3457789999999999999999999998743322          1233334444444444677889999999991111  


Q ss_pred             ------------hhhhHhHh--------------cCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCC
Q 027382           78 ------------RAVTSAYY--------------RGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        78 ------------~~~~~~~~--------------~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                                  ......|+              .++++++|.+.++. +++..+. ..+..+..    .+-+|-|+.|+
T Consensus        98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~Ka  172 (373)
T COG5019          98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKA  172 (373)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeecc
Confidence                        11122222              36788999998876 4444333 34444544    35578888999


Q ss_pred             CCCCCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382          131 DLGSLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       131 D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                      |.....+  ...+.+.+....+++++|.  ..+.+..+.-.-.....+.+.++.
T Consensus       173 D~lT~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~PF  224 (373)
T COG5019         173 DTLTDDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIPF  224 (373)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCCe
Confidence            9743111  1122344455667888774  344444332222333344444433

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=7.4e-10  Score=90.17  Aligned_cols=157  Identities=14%  Similarity=0.025  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      -|+..|+-..|||||++.+.+.....- ...-.|++...........+..+.++|.||++++-......+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            478899999999999999998654321 1222355555555556666678999999999999888888888999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR---ENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      ++++.-.....+. +..+.-..  ....++|++|+|..++.. ..+.+++....   .+++++.+|+++|.|++++-+.|
T Consensus        82 ~~deGl~~qtgEh-L~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276          82 AADEGLMAQTGEH-LLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             eCccCcchhhHHH-HHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence            9976433333333 22222211  233599999999875321 12233333333   24578999999999999999998


Q ss_pred             HHHHH
Q 027382          173 LTEIY  177 (224)
Q Consensus       173 ~~~i~  177 (224)
                      .+...
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            87763

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.14  E-value=7e-11  Score=92.84  Aligned_cols=54  Identities=17%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             CcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHH
Q 027382          121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       121 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      .+-++|+||+|+.+......+.+.+..+..  .++++++|+++|+|+++++++|..
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999643222344444444443  467999999999999999999876

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.06  E-value=5.2e-10  Score=87.60  Aligned_cols=157  Identities=14%  Similarity=0.104  Sum_probs=102.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTS   82 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~   82 (224)
                      .+..--|.|+|-.++|||||+++|......+...-+.+.+.......+.. .-.+.+.||.|-         ..|.+. -
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~AT-L  252 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQAT-L  252 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHH-H
Confidence            44556789999999999999999997666555444333333334444422 235678899881         122222 2


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV----IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                      .....+|+++-|.|++.|..-......+..+.+..-...|    ++=|=||+|..+....        ..+++  -+.+|
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is  322 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS  322 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence            2346899999999999988777777777777665433333    4455677776432211        11222  57789


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q 027382          159 ALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       159 ~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      +++|+|.+++.+.+-..+....
T Consensus       323 altgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             cccCccHHHHHHHHHHHhhhhh
Confidence            9999999999988877775554

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=3.6e-09  Score=79.67  Aligned_cols=186  Identities=16%  Similarity=0.221  Sum_probs=103.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccCCcceeeEEEEEEECCeEEEEEEEeCCChh------
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------   75 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------   75 (224)
                      +.-..++|+|+|.+|.|||||+|.|+.......         +..|..+......+.-++...++.++||||-.      
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence            455789999999999999999999987543321         11222333333444446777889999999911      


Q ss_pred             ------------hhhh--------hhHhHhc--CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           76 ------------RYRA--------VTSAYYR--GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        76 ------------~~~~--------~~~~~~~--~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                                  .+.+        .....+.  .++.++|.+.++. +++..+. +.+..+-+    -+.++-|+.|.|.
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDt  196 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADT  196 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccc
Confidence                        1111        1111122  4567777777765 4443332 23333333    3447777889996


Q ss_pred             CC--CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCee
Q 027382          133 GS--LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTR  204 (224)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (224)
                      ..  ++..-.+.+++-...+++.+|+--..+...=+..++   +.+.+.++..---+.++-...+.-...++++
T Consensus       197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN---~kvR~~iPFAVVGsd~e~~vnG~~vlGRktr  267 (336)
T KOG1547|consen  197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN---DKVRESIPFAVVGSDKEIQVNGRRVLGRKTR  267 (336)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH---HHHHhhCCeEEecccceEEEcCeEeeccccc
Confidence            31  122222334444556788777765554433333333   3444555554444455555555555554443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.05  E-value=1.5e-09  Score=90.32  Aligned_cols=115  Identities=19%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh----------HHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS----------FDHMARWLDELRGHA-DKNIVIMLIGNKC  130 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~ilv~nK~  130 (224)
                      ....+.++|.+|+...+.-|..++.++++||||+++++-+.          +.+....+..+.+.. -.+.|++|+.||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            56678999999999999999999999999999999875222          333344444443332 2579999999999


Q ss_pred             CCC------CC----------C--CCCHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          131 DLG------SL----------R--AVPTEDAQEFAQR------------ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       131 D~~------~~----------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      |+-      ..          .  .-..+.+..|...            ..+.++.++|.+..++..+|+.+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            961      10          0  1234555555443            112466888998899999998887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=4.7e-09  Score=84.33  Aligned_cols=162  Identities=14%  Similarity=0.214  Sum_probs=94.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----   77 (224)
                      +....+.++++|+.|.|||||+|.|+.......         ...+.........+.-++..+.++++||||-.+.    
T Consensus        17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns   96 (366)
T KOG2655|consen   17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS   96 (366)
T ss_pred             hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence            344669999999999999999999998744322         1112233333333444677889999999991111    


Q ss_pred             ----------hhhhHhH-----------hc--CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           78 ----------RAVTSAY-----------YR--GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        78 ----------~~~~~~~-----------~~--~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                                ......|           +.  .+++++|.+.++. +++..+. ..+..+..    .+.+|-|+.|+|..
T Consensus        97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKADTL  171 (366)
T ss_pred             ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeeccccC
Confidence                      1111222           22  7788999998876 4333332 23333433    46688888999974


Q ss_pred             CCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          134 SLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ...+  .-...+.+-+..+++++|....-..   +..+......+....
T Consensus       172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~  217 (366)
T KOG2655|consen  172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSI  217 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcC
Confidence            3211  1112233445567777666554433   444444444554443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.5e-09  Score=81.72  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---hhhhHhHhcCCCEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---RAVTSAYYRGAVGAM   92 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi   92 (224)
                      -+|+++|...+||||+.+..+..-.+.. .-....+.....-.+....+.+.+||.||+-.+   ..-....++.+.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            4599999999999999888775443222 111111111111123345678999999997654   223566789999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHH---------HcCCeEEEEcC
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLR--AVPTEDAQEFAQ---------RENLFFMETSA  159 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~---------~~~~~~~~~s~  159 (224)
                      ||+|+.+ +-.+.+.++...+.+..  ++++.+-+++.|.|...+.  .....++.+..+         ...+.|+-+|.
T Consensus       107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            9999987 45555555555555444  3678899999999974321  111111221111         12345777777


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 027382          160 LEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      . .+.+-++|..+++.+..+.+
T Consensus       186 y-DHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  186 Y-DHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             c-chHHHHHHHHHHHHHhhhch
Confidence            6 56789999999988876643

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=8.1e-09  Score=82.94  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE----------------CCeEEEEEEEeCCC-----
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI----------------DHKTVKAQIWDTAG-----   73 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~D~~G-----   73 (224)
                      .+++.++|.|+||||||.|++..........|+.+++-..-...+                ......+.++|++|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            368999999999999999999988755444444332222211111                12346788999998     


Q ss_pred             --hhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382           74 --QERYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        74 --~~~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                        .+......-.-++.+|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              3344555666688999999999976

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-09  Score=90.45  Aligned_cols=166  Identities=19%  Similarity=0.329  Sum_probs=121.4

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      ...=..+|+.|+|..++|||+|+++++.+.+.....+. +.. ....+.+++....+.+.|.+|..     ...|...+|
T Consensus        25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvd   97 (749)
T KOG0705|consen   25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVD   97 (749)
T ss_pred             ecccchhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCc-----hhhhhhhcc
Confidence            34446789999999999999999999998875544443 333 33455567888899999999843     234566799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCC--CCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGS--LRAVPTEDAQEFAQ-RENLFFMETSALEATNV  165 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v  165 (224)
                      ++||||.+.+..+++.+..+...+-... ...+|+++++++.-...  .+.....+..+++. -..+.+|++++.+|.++
T Consensus        98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv  177 (749)
T KOG0705|consen   98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV  177 (749)
T ss_pred             ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence            9999999999999998887765554333 35688888887754422  23333344444443 35578999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 027382          166 ETAFLTVLTEIYRIISK  182 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~~  182 (224)
                      ...|..+...+....++
T Consensus       178 ~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  178 ERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999888777444

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.02  E-value=1.6e-10  Score=88.54  Aligned_cols=159  Identities=15%  Similarity=0.098  Sum_probs=90.4

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccCCc---------------ceeeEEEEEEEC--
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----------SVDSKATI---------------GVEFQTKTLSID--   60 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~--   60 (224)
                      .+...+.+.|.|.|+||+|||||+++|...-.           .+++..+-               ....+....--.  
T Consensus        23 ~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~  102 (266)
T PF03308_consen   23 YPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS  102 (266)
T ss_dssp             GGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred             HhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC
Confidence            34445678999999999999999999865211           11111010               011111111111  


Q ss_pred             ----------------CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE
Q 027382           61 ----------------HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM  124 (224)
Q Consensus        61 ----------------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i  124 (224)
                                      ...+.+.+++|.|--   +.-.....-+|.+++|..+.-.+..+.++.-+..+.        =+
T Consensus       103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di  171 (266)
T PF03308_consen  103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DI  171 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SE
T ss_pred             CCCccHhHHHHHHHHHHcCCCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cE
Confidence                            113678899998732   112335667999999999987777666555333333        38


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          125 LIGNKCDLGSLRAVPTEDAQEFAQR-------ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       125 lv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      +|+||.|.+.... ...+++.....       +..+++.+||.++.|++++++.|.+.....
T Consensus       172 ~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  172 FVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             EEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            8999999643211 12233333322       124799999999999999999988755433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.02  E-value=1.8e-09  Score=83.95  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=100.7

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccCCcceee----------------EEEEEE-
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----------SVDSKATIGVEF----------------QTKTLS-   58 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~~~~~----------------~~~~~~-   58 (224)
                      .+.+...+...|.+.|.||+|||||+.+|...-.           .+++..| |-.+                +..... 
T Consensus        43 ~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T-GGsiLGDRiRM~~~~~~~~vFiRs~~s  121 (323)
T COG1703          43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT-GGSILGDRIRMQRLAVDPGVFIRSSPS  121 (323)
T ss_pred             HHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC-CccccccHhhHHhhccCCCeEEeecCC
Confidence            3445566778999999999999999999865211           1111111 1111                000000 


Q ss_pred             -----------------ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382           59 -----------------IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI  121 (224)
Q Consensus        59 -----------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  121 (224)
                                       ++...+.+.+++|.|--..   -.....-+|.+++|.-+.-.+..+.++.-+..+..      
T Consensus       122 rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------  192 (323)
T COG1703         122 RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------  192 (323)
T ss_pred             CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------
Confidence                             0122467889999884322   23345668999998877767777776664444442      


Q ss_pred             cEEEEEeCCCCCCCCCCCHHHHHHHHHH---------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhccc
Q 027382          122 VIMLIGNKCDLGSLRAVPTEDAQEFAQR---------ENLFFMETSALEATNVETAFLTVLTEIYRIISKKS  184 (224)
Q Consensus       122 p~ilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~  184 (224)
                        ++|+||.|..+.. ....++......         +..+++.+||.+|+|++++++.+.+...-......
T Consensus       193 --i~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~  261 (323)
T COG1703         193 --IIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGL  261 (323)
T ss_pred             --eeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccc
Confidence              8899999964321 111111111111         22468999999999999999999887655544443

>cd01900 YchF YchF subfamily

Probab=99.01  E-value=1.5e-09  Score=85.35  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=53.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh-------
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE-------   75 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~-------   75 (224)
                      |+++|.|+||||||+|+|.+........+..+.......+.+...               ...+.++|+||-.       
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998765444444333333333333222               2358999999922       


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                      .........++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            22223334467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=7.1e-09  Score=81.83  Aligned_cols=147  Identities=18%  Similarity=0.120  Sum_probs=106.3

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhc---C-CC------C----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFAR---N-EF------S----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~---~-~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .....-+||.-+|+..-|||||--++..   . ..      .    .......|+++....+.++.....+--.|+||+.
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA  128 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA  128 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence            3456778999999999999999776643   1 10      0    1122345888888888888888899999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA---VPTEDAQEFAQRENL  152 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~  152 (224)
                      +|-.....-....|+.|+|+.++| ..+.+.++.+-..++..  -..+++++||.|+.++.+   .-..+++++..++++
T Consensus       129 DYIKNMItGaaqMDGaILVVaatD-G~MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATD-GPMPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCC-CCCcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            998888888889999999999998 34444555544444443  244888999999974332   234467788888764


Q ss_pred             -----eEEEEcC
Q 027382          153 -----FFMETSA  159 (224)
Q Consensus       153 -----~~~~~s~  159 (224)
                           |++.-||
T Consensus       206 ~Gd~~PvI~GSA  217 (449)
T KOG0460|consen  206 DGDNTPVIRGSA  217 (449)
T ss_pred             CCCCCCeeecch
Confidence                 6776554

>cd01855 YqeH YqeH

Probab=98.98  E-value=4.2e-09  Score=78.96  Aligned_cols=96  Identities=18%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----H
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----Q  148 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~  148 (224)
                      .+.+...+..+++.+|++++|+|++++..-     |...+... ..+.|+++|+||+|+.+.. ........+.     .
T Consensus        21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~   93 (190)
T cd01855          21 EDFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAA   93 (190)
T ss_pred             HHHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHh
Confidence            334577888899999999999999875321     11111111 1358999999999996432 2344444444     2


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          149 RENL---FFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ..+.   .++.+||+++.|+++++..+.+.+
T Consensus        94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          94 GLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3333   589999999999999999988765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.90  E-value=1.1e-08  Score=74.30  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME  156 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (224)
                      ++.+..+.++++|++++|+|++++..... ..+...+..   .+.|+++|+||+|+.+...  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            45678888999999999999987543222 122222222   2589999999999853111  11222333445678999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +|++++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999998887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.7e-09  Score=87.42  Aligned_cols=140  Identities=19%  Similarity=0.225  Sum_probs=103.9

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEECCeEEEEEEEeC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSIDHKTVKAQIWDT   71 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~   71 (224)
                      ++......-+|.++.+..+||||.-.++++..-....                ....|+++....+.++++..++.++||
T Consensus        30 ~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidt  109 (753)
T KOG0464|consen   30 INPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDT  109 (753)
T ss_pred             CCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecC
Confidence            3445556678999999999999999999873321111                112278888889999999999999999


Q ss_pred             CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027382           72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN  151 (224)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (224)
                      ||+-.|+-....+++-.|+++.|||.+-.-..+.+..|    ++....++|-.+++||+|......  ...+...-++.+
T Consensus       110 pghvdf~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~anf--e~avdsi~ekl~  183 (753)
T KOG0464|consen  110 PGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLG  183 (753)
T ss_pred             CCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhC
Confidence            99999999999999999999999999976555555555    444445799999999999753221  223444455566


Q ss_pred             Ce
Q 027382          152 LF  153 (224)
Q Consensus       152 ~~  153 (224)
                      +.
T Consensus       184 ak  185 (753)
T KOG0464|consen  184 AK  185 (753)
T ss_pred             Cc
Confidence            53

>PRK12289 GTPase RsgA; Reviewed

Probab=98.85  E-value=1.4e-08  Score=82.82  Aligned_cols=92  Identities=17%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME  156 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (224)
                      ..+.+..+.++|.+++|+|+.++. ....+.+|+..+..   .++|+++|+||+|+.+...  .+...+.....+..++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            344555689999999999999865 44456777765533   3689999999999953211  12223334567788999


Q ss_pred             EcCCCCCCHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLT  174 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~  174 (224)
                      +||+++.|+++++..+..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999988764

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.83  E-value=4.3e-08  Score=74.80  Aligned_cols=89  Identities=25%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA   88 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~   88 (224)
                      -+|.++|.|.+||||++..|.+..........  .+.....-....+.-.+++.|.||.-+       -........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyef--ttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEF--TTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccc--eeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            38999999999999999999976544333222  233333323344566789999999321       233455567789


Q ss_pred             CEEEEEEeCCChhhHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHM  106 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~  106 (224)
                      +.+++|.|+-.|-+...+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999998876655444

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.82  E-value=2.2e-08  Score=79.82  Aligned_cols=88  Identities=13%  Similarity=0.005  Sum_probs=67.9

Q ss_pred             HhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382           82 SAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      ...+.++|.+++|+|+.++. ++..+.+|+..+...   ++|+++|+||+|+.+..  .......+....+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            44588999999999999987 888888888776643   68999999999996431  1122233445567889999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLT  174 (224)
Q Consensus       161 ~~~~v~~~~~~i~~  174 (224)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999998887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.2e-08  Score=72.79  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +++++|.+|+|||||+|++.+........ ..+.+.....+.++.   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877643222 224455555555543   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=4.6e-08  Score=78.19  Aligned_cols=119  Identities=20%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc-ceeeEEEEEEEC------Ce-----------------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSID------HK-----------------------   62 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~------~~-----------------------   62 (224)
                      ...--|+++|....||||||+.|+...++.-...+. ++++....+.-+      +.                       
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            345568999999999999999999988763222111 122222222111      00                       


Q ss_pred             ----------EEEEEEEeCCCh---------h--hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382           63 ----------TVKAQIWDTAGQ---------E--RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI  121 (224)
Q Consensus        63 ----------~~~~~l~D~~G~---------~--~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  121 (224)
                                --.+.++||||.         .  .+.....++..++|.+|++||+..-+--++....+..++.+   .-
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Ed  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---ED  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cc
Confidence                      124889999991         1  23556788899999999999998765555666666666654   34


Q ss_pred             cEEEEEeCCCCCC
Q 027382          122 VIMLIGNKCDLGS  134 (224)
Q Consensus       122 p~ilv~nK~D~~~  134 (224)
                      -+-+|.||.|..+
T Consensus       213 kiRVVLNKADqVd  225 (532)
T KOG1954|consen  213 KIRVVLNKADQVD  225 (532)
T ss_pred             eeEEEeccccccC
Confidence            4778899999753

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.82  E-value=1.3e-08  Score=74.97  Aligned_cols=57  Identities=28%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      +..++++++|.||+|||||+|+|.+....... +..|++.....+.+.   ..+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence            44589999999999999999999987653332 223566655555443   2588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.81  E-value=1.7e-08  Score=73.37  Aligned_cols=56  Identities=18%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      ..++|+++|.+|+|||||+|+|.+........ ..|.+.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence            46789999999999999999999866533322 225555444444322   378999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.77  E-value=2.7e-08  Score=79.71  Aligned_cols=86  Identities=16%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             HhcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      ...++|++++|+|+.+++.... +.+|+..+..   .++|+++|+||+|+.+... ...+..++.+..+.+++++|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765444 4667766654   3689999999999953221 122344555667889999999999


Q ss_pred             CCHHHHHHHHH
Q 027382          163 TNVETAFLTVL  173 (224)
Q Consensus       163 ~~v~~~~~~i~  173 (224)
                      .|+++++..+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999988764

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=3.4e-08  Score=85.16  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=89.8

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------ccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------SKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      .+++.+..-+++++-+...|||||...|+..+--..              ...+.|++...-.+..-..++.++++|+||
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg   81 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence            467788899999999999999999999977442111              112336666666666666889999999999


Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                      |-+|.+.......-+|++++++|+...-.-+...-..+.+.+    +.-+++|+||+|.
T Consensus        82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr  136 (887)
T KOG0467|consen   82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR  136 (887)
T ss_pred             ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence            999999999999999999999999874333322222222332    4557899999994

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.76  E-value=3e-08  Score=75.73  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=80.4

Q ss_pred             ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhcC----CCCCcEEEEE
Q 027382           59 IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR-------QSFDHMARWLDELRGHA----DKNIVIMLIG  127 (224)
Q Consensus        59 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ilv~  127 (224)
                      +.-..+.++.+|.+|+...+.-|..++.+.-++|||+..++.       .+-..+++.+..++...    -..+.+|+++
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL  276 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL  276 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence            334556799999999999999999999999999999988751       12223333333333222    2467899999


Q ss_pred             eCCCCCCC----------------------------CCCCHH--HHHHHHH----H---------cCCeEEEEcCCCCCC
Q 027382          128 NKCDLGSL----------------------------RAVPTE--DAQEFAQ----R---------ENLFFMETSALEATN  164 (224)
Q Consensus       128 nK~D~~~~----------------------------~~~~~~--~~~~~~~----~---------~~~~~~~~s~~~~~~  164 (224)
                      ||.|+..+                            ...+..  .++-|.+    +         +-+.+..+.|.+-++
T Consensus       277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen  356 (379)
T KOG0099|consen  277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  356 (379)
T ss_pred             cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence            99997311                            011111  1111111    1         123456788999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 027382          165 VETAFLTVLTEIYRIIS  181 (224)
Q Consensus       165 v~~~~~~i~~~i~~~~~  181 (224)
                      +..+|+...+.|.++..
T Consensus       357 IrrVFnDcrdiIqr~hl  373 (379)
T KOG0099|consen  357 IRRVFNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998887766543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=8.2e-08  Score=81.10  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +.+..-+|.+.-+-.+||||+-++++....-...                ....|++....-..+.+..+.+.++||||+
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            4456678999999999999999998774321100                011266777666677788999999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                      -.|.-.....++-.|++++|++....-.-+...-|.+.-+    -++|.+.++||.|.
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDR  168 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence            9998888999999999999999887544444444533322    27999999999996

>PRK12288 GTPase RsgA; Reviewed

Probab=98.73  E-value=9.1e-08  Score=78.00  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=66.5

Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      ..++|.+++|++.....++..+.+|+..+..   .++|+++|+||+|+.+.... ...+..+.....+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888889999999876543   36899999999999642211 1122333445667899999999999


Q ss_pred             CHHHHHHHHHH
Q 027382          164 NVETAFLTVLT  174 (224)
Q Consensus       164 ~v~~~~~~i~~  174 (224)
                      |+++++..+..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988764

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.72  E-value=8.8e-08  Score=78.74  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE----FAQR  149 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~~  149 (224)
                      .+.+..+...+.+.++++++|+|+.+..     ..|...+.+... +.|+++|+||+|+.. +....+++.+    ++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            5678888888899999999999997743     112223332222 578999999999965 3333444443    4566


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382          150 ENL---FFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       150 ~~~---~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      .++   .++.+||+++.|++++|..+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   38999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.68  E-value=4.6e-07  Score=74.09  Aligned_cols=153  Identities=16%  Similarity=0.249  Sum_probs=92.4

Q ss_pred             CcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccCCcceee----------EEEEEE
Q 027382            3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFS--------------VDSKATIGVEF----------QTKTLS   58 (224)
Q Consensus         3 ~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~----------~~~~~~   58 (224)
                      |.++++.++....|-|.|+|+..+||||||++|...-.-              +-+....|.++          ....+.
T Consensus         5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~   84 (492)
T PF09547_consen    5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT   84 (492)
T ss_pred             hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence            567888899999999999999999999999999762110              00111112111          222334


Q ss_pred             E-CCeEEEEEEEeCCCh-------------hhh-hhhh---------------HhHh--cCCCEEEEEEeCC--C--hhh
Q 027382           59 I-DHKTVKAQIWDTAGQ-------------ERY-RAVT---------------SAYY--RGAVGAMLVYDMT--K--RQS  102 (224)
Q Consensus        59 ~-~~~~~~~~l~D~~G~-------------~~~-~~~~---------------~~~~--~~~d~vi~v~d~~--~--~~s  102 (224)
                      + ++..++++++|+.|-             +++ ..-|               +..+  +..=|+++.-|-+  +  ++.
T Consensus        85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~  164 (492)
T PF09547_consen   85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN  164 (492)
T ss_pred             ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence            4 467789999999880             000 0000               0001  1223455555543  2  455


Q ss_pred             HHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382          103 FDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus       103 ~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      +..+++ ....+++.   +.|+++++|-.+...  ....+...++..+++++++++++.
T Consensus       165 Y~eAEervI~ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~  218 (492)
T PF09547_consen  165 YVEAEERVIEELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCE  218 (492)
T ss_pred             HHHHHHHHHHHHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehH
Confidence            555543 55556554   799999999988542  233455667777788887777654

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.67  E-value=3.9e-08  Score=73.88  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=82.8

Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh----------HHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS----------FDHMARWLDELRGHA-DKNIVIMLIGNK  129 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~ilv~nK  129 (224)
                      -..+.+.+.|.+|+...+.-|.+++.+.-.++|++.++..+.          +++..-++.-+.... -.+.++|+++||
T Consensus       196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence            345668899999999999999999999988998887765322          222222222222221 157889999999


Q ss_pred             CCCCCC----------------CCCCHHHHHHHHHHc----C-----C-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          130 CDLGSL----------------RAVPTEDAQEFAQRE----N-----L-FFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       130 ~D~~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      .|+.++                ...+.+.+++|..+.    +     + .-..+.|.+-+|+.-+|..+.+.+++...
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            998542                233445566676552    1     1 23457788899999999999999887643

>cd01856 YlqF YlqF

Probab=98.66  E-value=8.5e-08  Score=70.67  Aligned_cols=58  Identities=22%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +..++++++|.+|+|||||+|++.+...... ....+.+.....+.+.   ..+.++||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4557999999999999999999998776322 2222455555555443   45789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1e-06  Score=75.64  Aligned_cols=144  Identities=14%  Similarity=0.164  Sum_probs=84.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE---------------------------------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ---------------------------------------   53 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------   53 (224)
                      +...||++.|..++||||++|+++-...-+........-+-                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            45689999999999999999999875543332211100000                                       


Q ss_pred             ----EEEEEECCe-----EEEEEEEeCCChh---hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382           54 ----TKTLSIDHK-----TVKAQIWDTAGQE---RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI  121 (224)
Q Consensus        54 ----~~~~~~~~~-----~~~~~l~D~~G~~---~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  121 (224)
                          ...+..+..     .=.+.++|.||-+   +..+....+...+|++|||.++.+..+..+ .+.+....+.   +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence                000000010     0146789999943   456666777889999999999987544443 3333333322   34


Q ss_pred             cEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEEcCC
Q 027382          122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--------FFMETSAL  160 (224)
Q Consensus       122 p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~  160 (224)
                      .+.|+.||+|.....+.-.+++.+...++..        .++.||++
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            4777788899853333223444433333321        37888865

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.65  E-value=8.9e-08  Score=75.99  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      ...++++++|.+|+|||||+|+|.+........ ..|.|.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence            356899999999999999999999876433322 235566655555532   4789999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.65  E-value=4.5e-06  Score=59.57  Aligned_cols=147  Identities=15%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCC-C------------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA-G------------------   73 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G------------------   73 (224)
                      +..+||++.|+||||||||+.++...-....+..   .-+.+..+.-++..+-|.++|+. |                  
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            4578999999999999999998875432222211   12333444445566666666665 3                  


Q ss_pred             ---hh----hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027382           74 ---QE----RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF  146 (224)
Q Consensus        74 ---~~----~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~  146 (224)
                         -+    .........+..||++|  +|--.+-.+. .......+.+......|++.++.+.+..       --++++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence               11    11122344455678444  4554433222 1223344444444578888888776642       123333


Q ss_pred             HHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          147 AQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       147 ~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ....++.++    .|.+|-+.+++.+++.+
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence            333333333    44556567777766544

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.65  E-value=1.2e-07  Score=75.60  Aligned_cols=58  Identities=24%  Similarity=0.386  Sum_probs=43.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +..++++++|.+|||||||+|+|.+....... +..|.|.....+.++.   .+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            45789999999999999999999987653332 2335666655555533   4789999994

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.64  E-value=1.4e-07  Score=75.78  Aligned_cols=154  Identities=14%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--------------ceeeEEEEEEEC--------------
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI--------------GVEFQTKTLSID--------------   60 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~--------------   60 (224)
                      .+..+.-+.|.++|+.+.|||||+-.|..+........+.              ..+.....+-++              
T Consensus       111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence            3456678899999999999999999887765543322221              111111111111              


Q ss_pred             -------CeEEEEEEEeCCChhhhhhhh-Hh-HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           61 -------HKTVKAQIWDTAGQERYRAVT-SA-YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        61 -------~~~~~~~l~D~~G~~~~~~~~-~~-~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                             ..+.-+.++|+.|++.|-... +. +-.+.|..++++.+++.-+.- .++.+....-   ..+|++++++|+|
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D  266 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKID  266 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecc
Confidence                   123457899999999874433 32 335789999999998743332 2333332222   2699999999999


Q ss_pred             CCCCCCC--CHHHHHHHHH----------------------Hc---CCeEEEEcCCCCCCHH
Q 027382          132 LGSLRAV--PTEDAQEFAQ----------------------RE---NLFFMETSALEATNVE  166 (224)
Q Consensus       132 ~~~~~~~--~~~~~~~~~~----------------------~~---~~~~~~~s~~~~~~v~  166 (224)
                      +.+...+  ..+++....+                      +.   -.|++.+|+.+|+|.+
T Consensus       267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld  328 (527)
T COG5258         267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD  328 (527)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence            8542211  1122222221                      11   1478999999999976

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.2e-08  Score=78.09  Aligned_cols=163  Identities=17%  Similarity=0.102  Sum_probs=99.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccCCc--------------------------------ceeeEEEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKATI--------------------------------GVEFQTKT   56 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~--------------------------------~~~~~~~~   56 (224)
                      ..-.++|.-+|+...||||+++++.+-..   ...-...+                                ........
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            34679999999999999999999876211   00000000                                00000000


Q ss_pred             EEECC---eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           57 LSIDH---KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        57 ~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      ..+.+   --..+.++|+||++..-+....-..-.|++++++..+++....+..+.+..+.-..  -..++++-||+|+.
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli  192 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhh
Confidence            00011   12457899999999776555555556788999888876333333333332222111  24589999999996


Q ss_pred             CCCCC--CHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          134 SLRAV--PTEDAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       134 ~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .+.+.  ..+++..|.+.   .++|++++||.-.-|++.+.+.|+..+
T Consensus       193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            54432  23445666655   356899999999999998887777665

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.1e-06  Score=74.10  Aligned_cols=114  Identities=18%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      .+..+.++=++|+|+||+||||||+.|..+-........    ....++ +.++...++++++|.  ...+ .....+.+
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTv-vsgK~RRiTflEcp~--Dl~~-miDvaKIa  134 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITV-VSGKTRRITFLECPS--DLHQ-MIDVAKIA  134 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEE-eecceeEEEEEeChH--HHHH-HHhHHHhh
Confidence            345667788899999999999999998764321111111    111121 467889999999993  2333 45567889


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGS  134 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~  134 (224)
                      |++++++|.+-.-.++.++ +++.+..+.   .| ++-|+++.|+-.
T Consensus       135 DLVlLlIdgnfGfEMETmE-FLnil~~HG---mPrvlgV~ThlDlfk  177 (1077)
T COG5192         135 DLVLLLIDGNFGFEMETME-FLNILISHG---MPRVLGVVTHLDLFK  177 (1077)
T ss_pred             heeEEEeccccCceehHHH-HHHHHhhcC---CCceEEEEeeccccc
Confidence            9999999998654444333 445555443   44 678899999854

>cd01855 YqeH YqeH

Probab=98.60  E-value=9.7e-08  Score=71.58  Aligned_cols=57  Identities=19%  Similarity=0.362  Sum_probs=40.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------CccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSV-------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      ...+++++|.+|+|||||+|+|.+.....       ......|++.....+.+..   .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            34689999999999999999999854311       1122225666666665543   579999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.59  E-value=1.2e-07  Score=76.65  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=46.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      ...++++|+|-|+||||||||+|.+.........+ |.|.....+.+...   +.++||||-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCc
Confidence            34588999999999999999999998874433333 78888887777554   889999993

>cd01859 MJ1464 MJ1464

Probab=98.58  E-value=2e-07  Score=67.56  Aligned_cols=57  Identities=23%  Similarity=0.276  Sum_probs=40.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      ....+++++|.+++|||||+|++.+... ..+.++.+.+.....+..+.   .+.+|||||
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            3567899999999999999999997553 33344445554433333322   689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.57  E-value=1.5e-07  Score=72.52  Aligned_cols=154  Identities=20%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      ......+++.|.+++|||+|||.++........ .+..|.+......   ...-.+.++|.||          ...+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence            567789999999999999999999875543222 1132333333333   3344678899999          3344455


Q ss_pred             hHhHhcCC---CEEEEEEeCCChh-hH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----CCHHHHHH------
Q 027382           81 TSAYYRGA---VGAMLVYDMTKRQ-SF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA----VPTEDAQE------  145 (224)
Q Consensus        81 ~~~~~~~~---d~vi~v~d~~~~~-s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~------  145 (224)
                      ...|+.+-   --+++++|++.+- .. .....|   +.+   .++|+.+|.||+|......    -....++.      
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~---~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW---LGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH---Hhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            55554322   2355566666421 11 112223   233   2799999999999742110    00111222      


Q ss_pred             -HHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382          146 -FAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       146 -~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                       -+.....+|+-+|+.++.|++.++..+.+
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhh
Confidence             22223457889999999999988766543

>cd01858 NGP_1 NGP-1

Probab=98.56  E-value=2.8e-07  Score=66.89  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             hHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382           83 AYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      ..+..+|++++|+|+.++..  ...+.+++   ... ..+.|+++|+||+|+.+... ....+..+.+.+....+.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeecc
Confidence            34678999999999998632  33333333   322 23589999999999953211 0111222222222335789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTEI  176 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i  176 (224)
                      ++.|++++++.+.+..
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999988886543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.56  E-value=3.7e-07  Score=74.43  Aligned_cols=83  Identities=17%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECC---------------eEEEEEEEeCCChh----
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDH---------------KTVKAQIWDTAGQE----   75 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~----   75 (224)
                      ++++++|.|++|||||++.|.+... .....|+.+.......+.+..               ....+.+.|+||..    
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 443334322222222223322               12467899999932    


Q ss_pred             ---hhhhhhHhHhcCCCEEEEEEeCC
Q 027382           76 ---RYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        76 ---~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                         .........++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence               23344556688999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.56  E-value=1e-06  Score=71.03  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------cC--------------CcceeeEEEEEE-------------E
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS-------KA--------------TIGVEFQTKTLS-------------I   59 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~-------------~   59 (224)
                      ..-.|+++|++|+||||++..|.........       +.              -.+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999988663211100       00              001111111000             0


Q ss_pred             CCeEEEEEEEeCCChhhh--------hhhhHh---H-hcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEE
Q 027382           60 DHKTVKAQIWDTAGQERY--------RAVTSA---Y-YRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLI  126 (224)
Q Consensus        60 ~~~~~~~~l~D~~G~~~~--------~~~~~~---~-~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv  126 (224)
                      ....+.+.++||||....        ..+...   . -...+..++|+|++.. +.+..+..    +.+..   -+.-+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~---~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV---GLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC---CCCEEE
Confidence            123468999999995321        111111   1 1246789999999853 23333222    22211   234788


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       127 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +||.|...    ....+...+...++|+..++  +|++++++-..=-+.+
T Consensus       266 lTKlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~  309 (318)
T PRK10416        266 LTKLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEF  309 (318)
T ss_pred             EECCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHH
Confidence            89999542    23456666677799988887  6888776644333333

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.53  E-value=3.2e-06  Score=64.99  Aligned_cols=87  Identities=20%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCcc---CCcceeeEEEEEEECCeEEEEEEEeCCChhhh------hhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN--EFSVDSK---ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY------RAV   80 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~   80 (224)
                      ..+..-|.|+|++++|||+|+|.|++.  .+.....   .|.|+-....... .+....+.++||+|....      ...
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence            346778999999999999999999998  5543322   2223222222211 124578999999994432      112


Q ss_pred             hHhHhc--CCCEEEEEEeCCC
Q 027382           81 TSAYYR--GAVGAMLVYDMTK   99 (224)
Q Consensus        81 ~~~~~~--~~d~vi~v~d~~~   99 (224)
                      ....+.  -+|.+||..+...
T Consensus        83 ~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcc
Confidence            223333  3888888877765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01856 YlqF YlqF

Probab=98.53  E-value=4.9e-07  Score=66.60  Aligned_cols=99  Identities=13%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             CCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382           71 TAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR  149 (224)
Q Consensus        71 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~  149 (224)
                      .||+- ..-......+.++|.+++|+|++++..... ..++..+     .+.|+++|+||+|+.+...  .....++.+.
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence            45543 334455677899999999999987543221 1122222     1478999999999853211  1122233334


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          150 ENLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ....++.+|++++.|++++...+...+.
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4456899999999999999988887653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.51  E-value=6.7e-06  Score=69.22  Aligned_cols=136  Identities=18%  Similarity=0.277  Sum_probs=87.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc-------------------------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-------------------------------------------   48 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------------------------------------------   48 (224)
                      .++.-+|+|+|+..+||||.+..+......+-....+                                           
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            3466789999999999999999886643221111000                                           


Q ss_pred             ---------ceeeEEEEE--EECCeE-EEEEEEeCCC-------------hhhhhhhhHhHhcCCCEEEEEEeCCChhhH
Q 027382           49 ---------GVEFQTKTL--SIDHKT-VKAQIWDTAG-------------QERYRAVTSAYYRGAVGAMLVYDMTKRQSF  103 (224)
Q Consensus        49 ---------~~~~~~~~~--~~~~~~-~~~~l~D~~G-------------~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~  103 (224)
                               |.++....+  .+.+.. -+..++|.||             -+....+...++.+.+++|+|+---   |.
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SV  461 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SV  461 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Cc
Confidence                     333333222  233322 3578999999             3345667889999999999998432   22


Q ss_pred             HHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027382          104 DHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE  150 (224)
Q Consensus       104 ~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~  150 (224)
                      +.-+.....+.. .-+.+...|+|++|.|+.+....++..++++..-.
T Consensus       462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGK  509 (980)
T KOG0447|consen  462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGK  509 (980)
T ss_pred             chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcC
Confidence            222222333332 22346778999999999887778888888887653

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.50  E-value=9e-07  Score=82.97  Aligned_cols=111  Identities=23%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc----cC--CcceeeEEEEEEECCeEEEEEEEeCCC----hh----hhhhhhHh
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDS----KA--TIGVEFQTKTLSIDHKTVKAQIWDTAG----QE----RYRAVTSA   83 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~----~~~~~~~~   83 (224)
                      -+|+|++|+||||+|.+- +..++...    ..  ..+.+.. ..-.+.   -+-.++|++|    ++    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999988 43443221    11  1111111 111122   2345899999    21    22334555


Q ss_pred             Hh---------cCCCEEEEEEeCCCh-----hh----HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           84 YY---------RGAVGAMLVYDMTKR-----QS----FDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        84 ~~---------~~~d~vi~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      ++         +..||||+++|+++-     +.    ...++..+..+.+..+..+||.+++||+|+.
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            54         358999999998752     11    1344455566666666789999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.49  E-value=3.8e-07  Score=66.06  Aligned_cols=56  Identities=23%  Similarity=0.313  Sum_probs=39.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      ....+++++|.+|+|||||+|.|.+..... ...+  +.+.....+.+.   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCC
Confidence            456889999999999999999999866422 2222  333333333332   3589999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.47  E-value=7.9e-07  Score=72.05  Aligned_cols=101  Identities=13%  Similarity=-0.008  Sum_probs=58.8

Q ss_pred             EEEEEEEeCCChhhhhh----hhHhH--hcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      .+.+.++||+|......    ....+  ....|.+++|+|+.... ....+    ..+.+..   -+--++.||.|... 
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~-  293 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADA-  293 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCC-
Confidence            35699999999543211    11111  12578899999997633 22222    2222211   22467789999753 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                         ..-.+-..+...+.|+..++  +|++++++...=-+.+
T Consensus       294 ---~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~  329 (336)
T PRK14974        294 ---KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF  329 (336)
T ss_pred             ---CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence               23345555566788887776  6888877654433333

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.47  E-value=7.8e-07  Score=70.51  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC---------------CeEEEEEEEeCCC-
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID---------------HKTVKAQIWDTAG-   73 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~D~~G-   73 (224)
                      .+..+.+++.++|.|++|||||.|.|..........|+.+++-....+.+.               .....+.++|++| 
T Consensus        15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            345577899999999999999999999988776666654444433333331               2346789999998 


Q ss_pred             ------hhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382           74 ------QERYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        74 ------~~~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                            .+......-.-++.+|+++-|+++.
T Consensus        95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence                  2334444556678999999998865

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=2.1e-06  Score=66.45  Aligned_cols=126  Identities=21%  Similarity=0.368  Sum_probs=77.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--ceeeEEEEEEE--CCeEEEEEEEeCCCh-------hhh---
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI--GVEFQTKTLSI--DHKTVKAQIWDTAGQ-------ERY---   77 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~l~D~~G~-------~~~---   77 (224)
                      .-..++|+.+|..|.|||||++.|++..+.....+..  +......++.+  .+..+.+.+.||.|-       +.+   
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            4578999999999999999999999987754433221  23333333334  456678899999981       111   


Q ss_pred             ----hhhhHhHh---------------cCCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           78 ----RAVTSAYY---------------RGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        78 ----~~~~~~~~---------------~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                          .+....|+               ...++++|.+.++. +++..+.- .+..+..    .+.+|-++.|.|..    
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDti----  189 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTI----  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhh----
Confidence                11122221               35678888888876 66655443 2233333    35567777888853    


Q ss_pred             CCHHHHHHHH
Q 027382          138 VPTEDAQEFA  147 (224)
Q Consensus       138 ~~~~~~~~~~  147 (224)
                       +..++..|.
T Consensus       190 -sK~eL~~FK  198 (406)
T KOG3859|consen  190 -SKEELKRFK  198 (406)
T ss_pred             -hHHHHHHHH
Confidence             345555443

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.45  E-value=1e-06  Score=63.86  Aligned_cols=85  Identities=13%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+...+ ...+..+.......++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988655432  12221 1111236899999999998532110 11112232333456899999999999999


Q ss_pred             HHHHHHHHH
Q 027382          169 FLTVLTEIY  177 (224)
Q Consensus       169 ~~~i~~~i~  177 (224)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            998876644

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.44  E-value=2.4e-06  Score=67.58  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             eEEEEEEEeCCChhhhhhhhH-------hHh-----cCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 027382           62 KTVKAQIWDTAGQERYRAVTS-------AYY-----RGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGN  128 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~n  128 (224)
                      ..+.+.++||||.........       ...     ..+|.+++|+|++.. +.+..+    ..+.+..   -+.-+|.|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence            347899999999543322211       111     237899999999752 233332    2222221   13577889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382          129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |.|...    ....+.......++|+..++  +|++++++-..
T Consensus       226 KlDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       226 KLDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             ccCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            999743    33455666667788887776  67777665433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.42  E-value=6.1e-06  Score=68.82  Aligned_cols=135  Identities=14%  Similarity=0.058  Sum_probs=71.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc------CCCC-CCccC--------------CcceeeEEEEEEEC-----------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR------NEFS-VDSKA--------------TIGVEFQTKTLSID-----------   60 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~------~~~~-~~~~~--------------~~~~~~~~~~~~~~-----------   60 (224)
                      ..+..|+++|.+||||||++..|..      .... ...++              -.+..+......-+           
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            3456799999999999999998863      1111 00000              01112111100000           


Q ss_pred             --CeEEEEEEEeCCChhhhhhh----hHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           61 --HKTVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        61 --~~~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                        ...+.+.++||+|.......    ...+  ....|.+++|+|++-.....   .....+.+.   --+--+|+||.|.
T Consensus       178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~  251 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDG  251 (429)
T ss_pred             HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccC
Confidence              12578999999994433211    1111  22568899999987532222   222333322   1346788999997


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382          133 GSLRAVPTEDAQEFAQRENLFFMET  157 (224)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~  157 (224)
                      ..    ..-.+.......+.|+..+
T Consensus       252 ~a----rgG~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       252 HA----KGGGALSAVAATKSPIIFI  272 (429)
T ss_pred             CC----CccHHhhhHHHHCCCeEEE
Confidence            42    2233444555556554444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.40  E-value=1.1e-06  Score=62.64  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                      ....+..+|++++|+|+.++.+..  .+.+++...   . .+.|+++++||+|+.+..  ...+..++.+..+..++++|
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEE
Confidence            345578999999999998865533  344444322   1 368999999999985322  12334455666667899999


Q ss_pred             CCCCC
Q 027382          159 ALEAT  163 (224)
Q Consensus       159 ~~~~~  163 (224)
                      ++++.
T Consensus        79 a~~~~   83 (141)
T cd01857          79 ALKEN   83 (141)
T ss_pred             ecCCC
Confidence            98775

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=5.1e-06  Score=63.38  Aligned_cols=163  Identities=20%  Similarity=0.257  Sum_probs=97.9

Q ss_pred             EEEEEcCCCC--CHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC--eEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           17 KVVLIGDSAV--GKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH--KTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        17 ~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      -++|+|..|+  ||.+|+.+|....+.........+.+...++.-.+  .++.+.+.-..  +++.--.........+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeEE
Confidence            4689999999  99999999988776544433333344433332222  22333333222  112111222233456799


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC---------------------------C---------
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL---------------------------R---------  136 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------------------~---------  136 (224)
                      +|||.+...++..+..|+..-.- .. --..+.++||.|....                           .         
T Consensus        84 mvfdlse~s~l~alqdwl~htdi-ns-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDI-NS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccc-cc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            99999999999999999753211 11 1225677899986310                           0         


Q ss_pred             -----C---CCHHHHHHHHHHcCCeEEEEcCCCC------------CCHHHHHHHHHHHHHHHHhcc
Q 027382          137 -----A---VPTEDAQEFAQRENLFFMETSALEA------------TNVETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       137 -----~---~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~~~~i~~~i~~~~~~~  183 (224)
                           .   .......+|+.++++.|++.++.+.            .|+..+|..+-..+..-+--+
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk  228 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILK  228 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceec
Confidence                 0   1112356889999999999988532            578888888776665444333

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.7e-06  Score=69.54  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=91.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----------------Cc-------ceeeEEEEEEE----------C
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----------------TI-------GVEFQTKTLSI----------D   60 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~-------~~~~~~~~~~~----------~   60 (224)
                      ..++++|+|.-.+|||||+-.|..+........                |.       |.+.....+.+          +
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            578999999999999999998877554322111                10       11111111111          1


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR--  136 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--  136 (224)
                      .....+.++|.+|+..|.......+.  -.|..++|+++...-.+. .++.+..+...   ++|++++++|+|+.+..  
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence            12245889999999888665544443  347788999887654444 34444444433   79999999999996531  


Q ss_pred             ----------------------CCCHHHHHHHHHH----cCCeEEEEcCCCCCCHH
Q 027382          137 ----------------------AVPTEDAQEFAQR----ENLFFMETSALEATNVE  166 (224)
Q Consensus       137 ----------------------~~~~~~~~~~~~~----~~~~~~~~s~~~~~~v~  166 (224)
                                            ..+..++-..+++    +-.|++-+|..+|+|++
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~  377 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR  377 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence                                  1112222222222    22478899999999865

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.35  E-value=4.8e-07  Score=65.32  Aligned_cols=59  Identities=24%  Similarity=0.330  Sum_probs=33.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---C-Ccc--eeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK---A-TIG--VEFQTKTLSIDHKTVKAQIWDTAGQERY   77 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~   77 (224)
                      -.++++|++|||||||+|.|.+........   . ..|  ++.....+.+..   ...++||||-..+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence            357999999999999999999874322110   0 111  222223333322   2478999995444

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.33  E-value=4.8e-06  Score=60.53  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|..|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999999875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.33  E-value=1.1e-06  Score=71.80  Aligned_cols=58  Identities=19%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCC-ccCC---cc--eeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVD-SKAT---IG--VEFQTKTLSIDHKTVKAQIWDTAGQERYR   78 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   78 (224)
                      ++++|.+|||||||||+|++...... ..+.   .|  +|.....+.+.+.   ..++||||-..+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            78999999999999999998654321 1111   11  2333333444332   2489999965443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.33  E-value=1.1e-06  Score=71.83  Aligned_cols=55  Identities=25%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCC----cc--eeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKAT----IG--VEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      ++|+|++|||||||||+|++..........    .|  +|.....+.+....   .++||||-.
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~  235 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN  235 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence            799999999999999999976533221111    01  23333344443322   689999954

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.31  E-value=5.4e-06  Score=65.84  Aligned_cols=101  Identities=13%  Similarity=0.043  Sum_probs=65.7

Q ss_pred             CCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382           71 TAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR  149 (224)
Q Consensus        71 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~  149 (224)
                      .|||- .........+..+|++++|+|+.++.+... ......+     .+.|+++|+||+|+.+...  .....++.+.
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            46654 223456677889999999999987644322 1111222     1578999999999853211  1122222333


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          150 ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      .+.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            456789999999999999988887766443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.29  E-value=4.7e-06  Score=66.55  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=66.3

Q ss_pred             CCChhh-hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382           71 TAGQER-YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR  149 (224)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~  149 (224)
                      .|||-. ........+..+|++++|+|+.++.+...  .++..+..    +.|+++|+||+|+.+...  .+...++..+
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            577542 23345667889999999999987644322  11111221    578999999999853210  1122233334


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          150 ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      .+.+++.+|++++.|++++.+.+...+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            456789999999999999998887766543

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=8.7e-06  Score=67.16  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             hhhhhhhHhHhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q 027382           75 ERYRAVTSAYYRGAV-GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQR  149 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~~  149 (224)
                      +.+....... ...| .+++|+|+.+..     ..|...+.+... +.|+++|+||+|+.+ .....+.+.++    ++.
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence            3455444443 4444 899999998733     112233333222 578999999999964 33334444444    555


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382          150 ENL---FFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       150 ~~~---~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      .++   .++.+||+++.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            665   58999999999999999998654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.22  E-value=3.1e-06  Score=66.00  Aligned_cols=55  Identities=22%  Similarity=0.202  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-cC-----CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDS-KA-----TIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .++++|.+|||||||+|+|.+....... .+     ...+|.....+.+.+    ..++||||-.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~  182 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFN  182 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcc
Confidence            5789999999999999999986432211 11     111333333344422    2799999954

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.22  E-value=2.8e-06  Score=70.05  Aligned_cols=56  Identities=23%  Similarity=0.407  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC----CCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF----SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      .+++++|.+|||||||+|+|+....    .....+..|+|.....+.++..   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986431    1111222355666555555332   379999995

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.19  E-value=4.3e-06  Score=68.84  Aligned_cols=57  Identities=21%  Similarity=0.401  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .+++++|.+|||||||+|+|++....    .......|+|.....+.+..   .+.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            58999999999999999999985421    11112224555554444422   25799999943

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.19  E-value=3e-06  Score=70.60  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=45.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .....+.|++||-|+|||||+||.|.+...-..+ .|.|.|..-.++.+..   .+.+.|+||.-
T Consensus       310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  310 RYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             CCCceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            3445899999999999999999999998764333 3446666666665533   57889999943

>PRK01889 GTPase RsgA; Reviewed

Probab=98.16  E-value=9.5e-06  Score=66.68  Aligned_cols=83  Identities=13%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEAT  163 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  163 (224)
                      ..++|.+++|+++..+-....+.+++..+...   +++.++|+||+|+.+..   .+..+.+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997544555667777666554   57789999999996421   112222222 345688999999999


Q ss_pred             CHHHHHHHHH
Q 027382          164 NVETAFLTVL  173 (224)
Q Consensus       164 ~v~~~~~~i~  173 (224)
                      |++++...+.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9998887763

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.15  E-value=2.3e-05  Score=57.74  Aligned_cols=84  Identities=15%  Similarity=0.016  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCChhhh----hhhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERY----RAVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~----~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      ...+.++|++|....    -.....+.  ...|.+++|+|+.....   ..++...+.+..+   ..-+|.||.|...  
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~--  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDA--  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCC--
Confidence            456888999996322    11111112  24899999999865332   2233333333222   2566779999753  


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 027382          137 AVPTEDAQEFAQRENLFFME  156 (224)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~  156 (224)
                        ....+...+...++|+..
T Consensus       154 --~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 --RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --CcchhhhhHHHHCcCeEe
Confidence              223344477777776543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.15  E-value=1.6e-05  Score=64.21  Aligned_cols=116  Identities=17%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccCCccee--------------------eEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVD------------------SKATIGVE--------------------FQTK   55 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~--------------------~~~~   55 (224)
                      ..++|+|+|...+|||||+-.|........                  ...++|.+                    ....
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            568999999999999999876654332211                  11111111                    1111


Q ss_pred             EEEECCeEEEEEEEeCCChhhhhhhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           56 TLSIDHKTVKAQIWDTAGQERYRAVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        56 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .+ ++....-+.++|..|++.|-...-.-+  .-.|..++++-++- .-+...++.+.....   -.+|+++|++|+|..
T Consensus       212 kI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa-GIiGmTKEHLgLALa---L~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  212 KI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA-GIIGMTKEHLGLALA---LHVPVFVVVTKIDMC  286 (641)
T ss_pred             ee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc-cceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence            11 122334578999999998855433222  34576777776543 222222333322222   269999999999985


Q ss_pred             C
Q 027382          134 S  134 (224)
Q Consensus       134 ~  134 (224)
                      .
T Consensus       287 P  287 (641)
T KOG0463|consen  287 P  287 (641)
T ss_pred             c
Confidence            4

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=2.6e-05  Score=64.02  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-C--ccCCc--------------------ceeeEEEEEE-------ECCeEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV-D--SKATI--------------------GVEFQTKTLS-------IDHKTV   64 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~--------------------~~~~~~~~~~-------~~~~~~   64 (224)
                      .-.++++|++|+||||++.+|....... .  ....+                    +..+......       -.....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3467899999999999999997632110 0  00000                    1111110000       012345


Q ss_pred             EEEEEeCCChhhhhhh----hHhH--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCC--CcEEEEEeCCCCCCC
Q 027382           65 KAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKN--IVIMLIGNKCDLGSL  135 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~  135 (224)
                      .+.++||+|.......    ....  .....-.++|++++. .+.+..+...+..........  -+--+|.||.|..  
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt--  294 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA--  294 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC--
Confidence            7899999995432221    1111  122345688999876 444444433333332111000  1235677999964  


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEc
Q 027382          136 RAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                        ...-.+-.+....++|+..++
T Consensus       295 --~~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        295 --SNLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CCccHHHHHHHHHCcCeEEEe
Confidence              345667788888888866664

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=9.2e-06  Score=67.77  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEEEEEE------------
Q 027382            6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTKTLSI------------   59 (224)
Q Consensus         6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~------------   59 (224)
                      +.++.+..+.-++-|+-+...|||||-..|....-.....              ...++++....+.+            
T Consensus        10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~   89 (842)
T KOG0469|consen   10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI   89 (842)
T ss_pred             HHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence            4567778888899999999999999999987643211100              01134443333322            


Q ss_pred             ----CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-C
Q 027382           60 ----DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-S  134 (224)
Q Consensus        60 ----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~  134 (224)
                          ++..+.++++|.||+-.|.+.....++-.|+.+.|+|..+.-..+.-..+.+.+.+    .+.-++++||.|.. -
T Consensus        90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlL  165 (842)
T KOG0469|consen   90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALL  165 (842)
T ss_pred             cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHH
Confidence                24568899999999999999999999999999999999875444433333333333    34457788999963 1


Q ss_pred             CCCCCHHHHHHHHH
Q 027382          135 LRAVPTEDAQEFAQ  148 (224)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (224)
                      +-+.+.+++-+..+
T Consensus       166 ELq~~~EeLyqtf~  179 (842)
T KOG0469|consen  166 ELQLSQEELYQTFQ  179 (842)
T ss_pred             hhcCCHHHHHHHHH
Confidence            13455555544333

>PRK13695 putative NTPase; Provisional

Probab=98.08  E-value=0.00012  Score=53.95  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             HhHhcCCCEEEEEEeC---CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382           82 SAYYRGAVGAMLVYDM---TKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                      ...+..++.  +++|-   .+..+ ....+.+..+.   ..+.|++++.+|...       .....++....+..+++++
T Consensus        91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~---~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~  157 (174)
T PRK13695         91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVL---DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT  157 (174)
T ss_pred             HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHH---hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc
Confidence            334556775  57773   32222 12222332232   336889999987432       2345566666677777774


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 027382          159 ALEATNVETAFLTVLTEI  176 (224)
Q Consensus       159 ~~~~~~v~~~~~~i~~~i  176 (224)
                         .+|-+++.+.+++.+
T Consensus       158 ---~~~r~~~~~~~~~~~  172 (174)
T PRK13695        158 ---PENRDSLPFEILNRL  172 (174)
T ss_pred             ---chhhhhHHHHHHHHH
Confidence               456667777776644

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=7.2e-05  Score=63.81  Aligned_cols=137  Identities=18%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC------CCccCC-----------------cceeeEEEEEE------E-CCeEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFS------VDSKAT-----------------IGVEFQTKTLS------I-DHKTV   64 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~-----------------~~~~~~~~~~~------~-~~~~~   64 (224)
                      .-.|+|+|+.|+||||++..|...-..      .....+                 .+..+......      + ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            456889999999999999888652110      000000                 01111110000      0 01347


Q ss_pred             EEEEEeCCChhhhhhh-------hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           65 KAQIWDTAGQERYRAV-------TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      .+.|+||+|.......       .... . ....++|++.+.  +...+...+..+...    .+.-+|+||.|..    
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt----  497 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDET----  497 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCc----
Confidence            8999999994322111       1111 1 234567777763  233333444444332    3567889999964    


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382          138 VPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      .....+.......+.++..++.  |..|
T Consensus       498 ~~lG~aLsv~~~~~LPI~yvt~--GQ~V  523 (559)
T PRK12727        498 GRFGSALSVVVDHQMPITWVTD--GQRV  523 (559)
T ss_pred             cchhHHHHHHHHhCCCEEEEeC--CCCc
Confidence            3456777777888888766643  5555

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.06  E-value=8e-06  Score=64.46  Aligned_cols=58  Identities=22%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSV------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY   77 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   77 (224)
                      -.+++|++|||||||+|+|.......      ......-+|.....+.+.+.   -.++||||-..+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence            35899999999999999998743221      11111113334444444322   257999995443

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.06  E-value=2.5e-05  Score=58.72  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---------------------CCcceeeEEEEEE-------------ECC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK---------------------ATIGVEFQTKTLS-------------IDH   61 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~-------------~~~   61 (224)
                      -.|+++|++||||||.+-+|..........                     ...+..+......             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            358999999999999998876532111000                     0002222111000             001


Q ss_pred             eEEEEEEEeCCChhhhhh----hhHhHh--cCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+.+.++||+|......    .+..++  ...+-+++|.+++... ....+...+..+    +   +--++.||.|.. 
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet-  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDET-  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSS-
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCC-
Confidence            225699999999332211    111111  1567899999998633 333333322211    1   124568999964 


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382          135 LRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                         .....+-.++.+.+.|+-.++.  |.++
T Consensus       154 ---~~~G~~l~~~~~~~~Pi~~it~--Gq~V  179 (196)
T PF00448_consen  154 ---ARLGALLSLAYESGLPISYITT--GQRV  179 (196)
T ss_dssp             ---STTHHHHHHHHHHTSEEEEEES--SSST
T ss_pred             ---CCcccceeHHHHhCCCeEEEEC--CCCh
Confidence               3455677888888888766653  4444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=7e-05  Score=62.51  Aligned_cols=152  Identities=18%  Similarity=0.161  Sum_probs=81.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-----CC-CccC--C---------------cceeeEEEEEE-------ECCeEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEF-----SV-DSKA--T---------------IGVEFQTKTLS-------IDHKTV   64 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~-----~~-~~~~--~---------------~~~~~~~~~~~-------~~~~~~   64 (224)
                      .-.|+++|+.|+||||++..|.+...     .. ....  +               .+.......-.       ......
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45799999999999999998875311     00 0000  0               01111100000       012235


Q ss_pred             EEEEEeCCChhhh----hhhhHhHh--cCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           65 KAQIWDTAGQERY----RAVTSAYY--RGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        65 ~~~l~D~~G~~~~----~~~~~~~~--~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      .+.++||+|....    ......+.  ....-.++|+|++. ...+.   +++..+...    -+--++.||.|..    
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~----~~~~~I~TKlDEt----  339 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH----GIHGCIITKVDEA----  339 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC----CCCEEEEEeeeCC----
Confidence            6889999993321    12222221  12345788889884 33333   333333321    2235678999964    


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHH
Q 027382          138 VPTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYRI  179 (224)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~~  179 (224)
                      ...-.+-.++...++|+..++  +|.+| +++...=.+.+.+.
T Consensus       340 ~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~  380 (420)
T PRK14721        340 ASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHR  380 (420)
T ss_pred             CCccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHH
Confidence            345667888888888877664  46666 44443333333333

>PRK00098 GTPase RsgA; Reviewed

Probab=98.04  E-value=1.1e-05  Score=64.79  Aligned_cols=56  Identities=27%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCC----cc--eeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKAT----IG--VEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .++++|++|+|||||+|.|++..........    .|  ++.....+.+...   ..++||||-.
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~  227 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS  227 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence            5889999999999999999986543221111    11  2222233333322   3789999954

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=3.7e-05  Score=71.05  Aligned_cols=114  Identities=25%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceee-EEEEEEECCeEEEEEEEeCCC----h----hhhhhhhHhHh---
Q 027382           19 VLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEF-QTKTLSIDHKTVKAQIWDTAG----Q----ERYRAVTSAYY---   85 (224)
Q Consensus        19 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G----~----~~~~~~~~~~~---   85 (224)
                      +|+|++|+||||++..--- .++ .......+... .+..++. +-.-.-.++||.|    +    +.....|..++   
T Consensus       129 ~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             EEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            7899999999999876432 121 11100001100 0111111 1223457889988    2    13344565553   


Q ss_pred             ------cCCCEEEEEEeCCChhh---------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           86 ------RGAVGAMLVYDMTKRQS---------FDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        86 ------~~~d~vi~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                            +..||||+.+|+++--+         ...++.-+..+.+......|+++++||.|+..
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                  47799999999875111         11223334555555557899999999999853

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.02  E-value=0.00019  Score=60.38  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=54.6

Q ss_pred             EEEEEEEeCCChhhhh----hhhHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYR----AVTSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      .+.+.++||+|.....    .....++.   ...-+++|++++-  ....+...+..+...   . +--++.||.|..  
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~---~-~~~vI~TKlDet--  370 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL---P-LDGLIFTKLDET--  370 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC---C-CCEEEEeccccc--
Confidence            4678999999953221    12233333   2345678888863  223333333333321   1 225778999964  


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 027382          136 RAVPTEDAQEFAQRENLFFMETSALEATNV-ETAF  169 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~  169 (224)
                        .....+..+....++|+..++  +|.+| +++.
T Consensus       371 --~~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        371 --SSLGSILSLLIESGLPISYLT--NGQRVPDDIK  401 (424)
T ss_pred             --ccccHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence              234567888888888876664  36665 3443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=3e-05  Score=63.80  Aligned_cols=140  Identities=17%  Similarity=0.179  Sum_probs=75.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-------CccC--------------CcceeeEEEEE--EE-------C-CeE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV-------DSKA--------------TIGVEFQTKTL--SI-------D-HKT   63 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~--------------~~~~~~~~~~~--~~-------~-~~~   63 (224)
                      .-.|+++|+.||||||++..|...-...       ..++              ..+..+....-  .+       . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3579999999999999999986421100       0000              00111110000  00       0 013


Q ss_pred             EEEEEEeCCChhhhhh----hhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      +.+.++||+|......    ....++  ...+.+++|+|++-.  ...+...+..+...    -+--++.||.|...   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            5889999999533211    122222  245778899988632  22233344444331    12356689999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382          138 VPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                       ..-.+-.++...++|+..++  +|.+|.
T Consensus       392 -k~G~iLni~~~~~lPIsyit--~GQ~VP  417 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT--DGQDVK  417 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence             45567777888888866654  244443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.01  E-value=2.6e-05  Score=56.02  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                      .+.+.++||+|..   .....++..+|.+++|..++-.+.+..++-  ..+.      ..-++++||+|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence            4678999999854   223458888999999998874444433222  1122      22478889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.01  E-value=1.3e-05  Score=63.94  Aligned_cols=59  Identities=20%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC------CcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA------TIGVEFQTKTLSIDHKTVKAQIWDTAGQERY   77 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   77 (224)
                      -.++++|++|+|||||+|.|++.........      ...++.....+.+...   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            4689999999999999999998654322111      1112333333434322   258999996543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.00  E-value=6.4e-05  Score=63.22  Aligned_cols=136  Identities=20%  Similarity=0.110  Sum_probs=72.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC----CCC------CccCC-----------cceeeEEEEEEE-----------C
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNE----FSV------DSKAT-----------IGVEFQTKTLSI-----------D   60 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~----~~~------~~~~~-----------~~~~~~~~~~~~-----------~   60 (224)
                      ..+..|+++|.+|+||||++..|...-    ...      .+.+.           .+..+.......           .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            346789999999999999998875411    100      00010           011111110000           0


Q ss_pred             CeEEEEEEEeCCChhhhhhhh----H--hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           61 HKTVKAQIWDTAGQERYRAVT----S--AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .....+.++||+|........    .  ..+-.+|.+++|+|++...   .+.+....+.+..   -..-+|.||.|...
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a  246 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA  246 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC
Confidence            112478999999954332111    1  1133678899999987642   2222223333221   12367789999642


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEc
Q 027382          135 LRAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                          ..-.+.......+.|+..++
T Consensus       247 ----~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 ----KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             ----cccHHHHHHHHHCcCEEEEe
Confidence                33456666667777655443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.00  E-value=4.2e-05  Score=56.07  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeC-CC----------------------
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT-AG----------------------   73 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G----------------------   73 (224)
                      +|++.|++|+|||||+++++..-... ..+.  .-+.+..+.-++...-+.+.|. .|                      
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999988543111 1111  1122233333444445555555 22                      


Q ss_pred             hhhhhh----hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 027382           74 QERYRA----VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC-DLGSLRAVPTEDAQEFAQ  148 (224)
Q Consensus        74 ~~~~~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~  148 (224)
                      .+.+..    .....+..+|  ++|+|--.+-.+. ...+...+......+.|++.++.+. +.        .-++++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence            011111    1222234566  6666743321110 0112222222222468888887666 32        13667777


Q ss_pred             HcCCeEEEEcCCCCCC
Q 027382          149 RENLFFMETSALEATN  164 (224)
Q Consensus       149 ~~~~~~~~~s~~~~~~  164 (224)
                      ..++.+++++..+...
T Consensus       147 ~~~~~i~~vt~~NRd~  162 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDA  162 (168)
T ss_dssp             TTTSEEEE--TTTCCC
T ss_pred             CCCcEEEEeChhHHhh
Confidence            7788889887665443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.98  E-value=8.2e-05  Score=62.44  Aligned_cols=86  Identities=15%  Similarity=0.003  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCChhhhh----hhhHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYR----AVTSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      .+.+.++||+|.....    .....+  .-..+.+++|+|+...   ..+.+....+.+..  + ..-+|.||.|...  
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~--  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA--  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence            4679999999943221    111111  1256788999998653   22333333333321  1 2356679999642  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 027382          137 AVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                        ..-.+.......++|+..++
T Consensus       255 --rgG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              23346667777777755554

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.95  E-value=0.00013  Score=59.06  Aligned_cols=85  Identities=11%  Similarity=0.097  Sum_probs=48.1

Q ss_pred             EEEEEEeCCChhhhhhhhHhHhc--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDMTKRQSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ....++++.|-.....+...++.        ..++++.|+|+.+.... +........+..      -=++++||+|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            55678999996655554444322        24789999999763221 111111122221      1278889999875


Q ss_pred             CCCCCHHHHHHHHHHcC--CeEEEEc
Q 027382          135 LRAVPTEDAQEFAQREN--LFFMETS  158 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~--~~~~~~s  158 (224)
                      +    .+.+++..+..+  ++++.+.
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec
Confidence            2    245666665544  4566543

>TIGR00959 ffh signal recognition particle protein

Probab=97.94  E-value=0.00017  Score=60.60  Aligned_cols=86  Identities=15%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             EEEEEEEeCCChhhhhh----hhHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      .+.+.++||+|......    ....+  .-..|.+++|+|+....   .+..+...+....+   ..-+|.||.|...  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence            46789999999432211    11111  23578899999987532   33333333332221   2366689999642  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 027382          137 AVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                        ....+...+...++|+..+.
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              23347777777788765554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=1.2e-05  Score=65.39  Aligned_cols=159  Identities=19%  Similarity=0.125  Sum_probs=96.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------------CCc----c------CCcceeeEEEEEEECC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-------------------VDS----K------ATIGVEFQTKTLSIDH   61 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-------------------~~~----~------~~~~~~~~~~~~~~~~   61 (224)
                      +....+++.++|+..+||||+-..++.....                   ..|    -      ...|.+...-...+..
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            3467899999999999999987766441110                   000    0      1113333333444555


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHHHHH--HHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFDHMA--RWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      ...++.+.|.||+..|......-..+||..++|+++...+   .|+.-.  +....+..... -...++++||+|-+...
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN  233 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence            6678999999999988887777788999999999885421   222211  11111222111 34578889999965321


Q ss_pred             --CCCHHH----HHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 027382          137 --AVPTED----AQEFAQREN------LFFMETSALEATNVETAFL  170 (224)
Q Consensus       137 --~~~~~~----~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  170 (224)
                        ...+++    +..|....+      ..|+++|..+|.++.+...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              112222    223333322      3599999999999887653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=0.00015  Score=61.59  Aligned_cols=142  Identities=20%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCC-c--------cCC--------------cceeeEEEEEE-------ECCeEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVD-S--------KAT--------------IGVEFQTKTLS-------IDHKTVK   65 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~~--------------~~~~~~~~~~~-------~~~~~~~   65 (224)
                      --++++|+.||||||++..|.+...... .        ++.              .+.........       ..-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            4589999999999999999876321100 0        000              01111000000       0012346


Q ss_pred             EEEEeCCChhhhhh---hhHhHhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382           66 AQIWDTAGQERYRA---VTSAYYRG---AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP  139 (224)
Q Consensus        66 ~~l~D~~G~~~~~~---~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~  139 (224)
                      +.++||+|......   .....+..   ..-.++|+|++..  ...+.+....+..    ...--+|+||.|..    ..
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet----~~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEA----AS  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCc----cc
Confidence            88999999332211   11111221   2236788888742  2223333333322    12345678999964    34


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 027382          140 TEDAQEFAQRENLFFMETSALEATNV-ETAF  169 (224)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~  169 (224)
                      ...+-.+....++++..++  +|++| +++.
T Consensus       407 ~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~  435 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVS--NGQRVPEDLH  435 (484)
T ss_pred             chHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence            5677888888888877664  46666 4443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.88  E-value=5.2e-05  Score=44.40  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=30.2

Q ss_pred             HhcCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           84 YYRGAVGAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                      .-.-.++++|++|++..  .+.+.....+..++.... +.|+++|.||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            33457889999999974  456666667777776654 799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.88  E-value=4.3e-05  Score=54.24  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           19 VLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI--DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        19 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      +.-|.+|+|||++--.+...-.. .     |...-....+.  ....+.+.++|+|+..  .......+..+|.++++.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~-----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~   75 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-L-----GKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT   75 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-C-----CCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence            45678899999997666432110 0     10001111110  1112789999999753  3334567889999999998


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .+- .++......++.+.+.. ...++.+++|+.+..
T Consensus        76 ~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          76 PEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             CCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            864 55555555555554433 245678999999853

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.85  E-value=0.00013  Score=57.83  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=68.5

Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME  156 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (224)
                      ..+.+....+.|-+++|+.+.+|+ +...+.+++-.....   ++..++++||+|+.+.......+........+.+++.
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~  146 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF  146 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence            344455556688888888898875 566666676655543   5667888999999764433224566677778889999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTE  175 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~  175 (224)
                      +|++++.+++++...+...
T Consensus       147 ~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         147 VSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ecCcCcccHHHHHHHhcCC
Confidence            9999999998887776544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00025  Score=63.23  Aligned_cols=153  Identities=18%  Similarity=0.162  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-Cc-c-------CC--------------cceeeEEEEE--E----E-CCeEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSV-DS-K-------AT--------------IGVEFQTKTL--S----I-DHKTVK   65 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~-~-------~~--------------~~~~~~~~~~--~----~-~~~~~~   65 (224)
                      --|+++|+.|+||||++..|....... .. .       ..              .+..+....-  .    + ....+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            357999999999999999988643111 00 0       00              0111110000  0    0 012357


Q ss_pred             EEEEeCCChhhh----hhhhHhH--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382           66 AQIWDTAGQERY----RAVTSAY--YRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV  138 (224)
Q Consensus        66 ~~l~D~~G~~~~----~~~~~~~--~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~  138 (224)
                      +.++||+|....    .......  ....+-.++|+|++. .+.+.++.   ..+...... -+--+|+||.|..    .
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt----~  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEA----T  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCC----C
Confidence            899999993211    1111111  123456889999874 33344333   333322110 1235678999964    2


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHH
Q 027382          139 PTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYR  178 (224)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~  178 (224)
                      ..-.+-.+....++|+..++  +|++| +++...=-+.+.+
T Consensus       338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~  376 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVD  376 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHH
Confidence            45567788888888877664  46666 4444333333333

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.84  E-value=3.4e-05  Score=57.22  Aligned_cols=83  Identities=20%  Similarity=0.134  Sum_probs=43.4

Q ss_pred             EEEEEEEeCCChhhhhhh---h--HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAV---T--SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~---~--~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      .....++++.|......+   .  ....-..+.+|.|+|+............+..-.+..     =++++||+|+.+.. 
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-  157 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-  157 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH-
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-
Confidence            356778888884433333   0  111235688999999977543444444333222222     27888999986422 


Q ss_pred             CCHHHHHHHHHHcC
Q 027382          138 VPTEDAQEFAQREN  151 (224)
Q Consensus       138 ~~~~~~~~~~~~~~  151 (224)
                      ...+..++..++.+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            12245555555543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.84  E-value=0.00063  Score=55.03  Aligned_cols=135  Identities=19%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC------CccCCccee----------------eEEEEEEEC-------------Ce
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSV------DSKATIGVE----------------FQTKTLSID-------------HK   62 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~----------------~~~~~~~~~-------------~~   62 (224)
                      .++-|.=|||||||++.++.+....      +.-..++++                -.+.-+++.             ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            3678999999999999998754310      000011111                011111110             12


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHh--------cCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .....++++.|-.........+.        -..|+++-|+|+..-.. .....+.+..-...+     =++++||.|+.
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv  158 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLV  158 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCC
Confidence            25677899988444433333222        24578999999987333 222233222211222     28889999997


Q ss_pred             CCCCCCHHHHHHHHHHcC--CeEEEEcC
Q 027382          134 SLRAVPTEDAQEFAQREN--LFFMETSA  159 (224)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~s~  159 (224)
                      +...  .+.++...++.+  +++++++.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            6332  455666666655  56888776

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.84  E-value=0.00013  Score=48.97  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           18 VVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        18 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      |.+.| ..|+||||+...+...-.. .     +...  ..++.+.. +.+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~v--l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRV--LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcE--EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            55666 5699999998877543221 1     1111  11222211 788999999864332  3367778999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 027382           97 MTKRQSFDHMARWLD  111 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~  111 (224)
                      .+. .++..+.++++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            754 66666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00063  Score=56.44  Aligned_cols=154  Identities=12%  Similarity=0.068  Sum_probs=82.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CCC--c-cC--------------CcceeeEEEEEE-------ECC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEF--------SVD--S-KA--------------TIGVEFQTKTLS-------IDH   61 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~--------~~~--~-~~--------------~~~~~~~~~~~~-------~~~   61 (224)
                      ..-.|+++|+.|+||||.+..|...-.        ...  . ++              -.+..+......       -..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            345789999999999999988864211        000  0 00              001111111100       012


Q ss_pred             eEEEEEEEeCCChhhhhh----hhHhHhcC--CC-EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRA----VTSAYYRG--AV-GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~----~~~~~~~~--~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+.+.++||+|......    ....++..  .+ -.++|+|++..  ...+.+.+..+...    -+--++.||.|.. 
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet-  325 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDET-  325 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCC-
Confidence            346799999999432211    12222332  13 58899999863  33333444444321    1235678999964 


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHH
Q 027382          135 LRAVPTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYRI  179 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~~  179 (224)
                         ...-.+-.++...+.|+..++  +|.++ +++...=.+.+.+.
T Consensus       326 ---~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~  366 (388)
T PRK12723        326 ---TCVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKK  366 (388)
T ss_pred             ---CcchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHH
Confidence               345567778888888876664  36666 44433333333333

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.78  E-value=0.00051  Score=56.51  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=74.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcc-eeeEEEE-----------------EEE------------CCeEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIG-VEFQTKT-----------------LSI------------DHKTV   64 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~-----------------~~~------------~~~~~   64 (224)
                      .-.|+++|+.||||||-+-.|...-........++ ++..+..                 +.+            ....+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            55689999999999999988876443111111110 0111000                 000            02346


Q ss_pred             EEEEEeCCChhhhhhh----hHhHhcCC--CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382           65 KAQIWDTAGQERYRAV----TSAYYRGA--VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV  138 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~----~~~~~~~~--d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~  138 (224)
                      .+.++||.|...++..    ...++..+  .-+.+|++++.  ....+...+..+....   + --++.||.|..    .
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~---i-~~~I~TKlDET----~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP---I-DGLIFTKLDET----T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC---c-ceeEEEccccc----C
Confidence            7999999995444322    33333322  33666777764  3444555555554321   1 24567999964    3


Q ss_pred             CHHHHHHHHHHcCCeEEEEc
Q 027382          139 PTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~s  158 (224)
                      +...+-....+.+.|+-.++
T Consensus       353 s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEe
Confidence            56667777777777755553

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00013  Score=59.18  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---------------------cceeeEEEEEEE------
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---------------------IGVEFQTKTLSI------   59 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~------   59 (224)
                      +++.....+=-|+++|-.|+||||.+-.|........+.+.                     .++.++......      
T Consensus        93 ~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia  172 (483)
T KOG0780|consen   93 ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIA  172 (483)
T ss_pred             ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHH
Confidence            34455556667899999999999999888653222211111                     022222221111      


Q ss_pred             -------CCeEEEEEEEeCCChhhhhh-hhHh---H--hcCCCEEEEEEeCCChhhHHHHHHHH
Q 027382           60 -------DHKTVKAQIWDTAGQERYRA-VTSA---Y--YRGAVGAMLVYDMTKRQSFDHMARWL  110 (224)
Q Consensus        60 -------~~~~~~~~l~D~~G~~~~~~-~~~~---~--~~~~d~vi~v~d~~~~~s~~~~~~~~  110 (224)
                             ..+.+.+.+.||+|...... +...   .  .-..|-+|||.|++-........+.+
T Consensus       173 ~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF  236 (483)
T KOG0780|consen  173 SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF  236 (483)
T ss_pred             HHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence                   14458899999999442221 1111   1  22578999999998765544444433

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00025  Score=58.27  Aligned_cols=140  Identities=19%  Similarity=0.187  Sum_probs=74.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC----------CccC-C----------cceeeEEEEE--EE-------C-CeE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV----------DSKA-T----------IGVEFQTKTL--SI-------D-HKT   63 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-~----------~~~~~~~~~~--~~-------~-~~~   63 (224)
                      .-.++++|+.||||||++..|.......          .+.. .          .+..+....-  .+       . ...
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~  285 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC  285 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence            4458999999999999999886421100          0000 0          0111110000  00       0 024


Q ss_pred             EEEEEEeCCChhhhh----hhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYR----AVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~----~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      +.+.++||+|.....    .....+..  ..+.+++|.++.  .....+...+..+..    --+--++.||.|..    
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET----  355 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDET----  355 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCC----
Confidence            689999999963221    11222222  346667777664  223333333333322    12246678999964    


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382          138 VPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      ...-.+-..+...+.|+..++.  |.++.
T Consensus       356 ~~~G~~Lsv~~~tglPIsylt~--GQ~Vp  382 (407)
T PRK12726        356 TRIGDLYTVMQETNLPVLYMTD--GQNIT  382 (407)
T ss_pred             CCccHHHHHHHHHCCCEEEEec--CCCCC
Confidence            3456677888888888766653  44444

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.69  E-value=2.9e-05  Score=57.84  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +-++|+|+.||||||+.+.+..
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHH
Confidence            5578999999999999998865

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.68  E-value=3.9e-05  Score=62.27  Aligned_cols=58  Identities=24%  Similarity=0.414  Sum_probs=43.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      -...|+++|+|-|++||||+||.|..+.. ....+..|.|.....+.++   -.+.|+|.||
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPg  306 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPG  306 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCc
Confidence            46789999999999999999999998765 3333344566555555443   3678999999

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=0.00069  Score=56.46  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC-CCCC-------cc--------------CCcceeeEEEE-E-----EECCeEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE-FSVD-------SK--------------ATIGVEFQTKT-L-----SIDHKTVKA   66 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~-~-----~~~~~~~~~   66 (224)
                      ..-++++|++||||||++.+|.... ....       .+              ...+....... .     .+....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468899999999999999987521 1000       00              00011111100 0     001135678


Q ss_pred             EEEeCCChhhh----hhhhHhHhc-----CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382           67 QIWDTAGQERY----RAVTSAYYR-----GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        67 ~l~D~~G~~~~----~~~~~~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      .++||+|....    -..+..++.     ...-.++|+|++..  .+.+...+..+...    -+--+|.||.|..    
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~----~~~glIlTKLDEt----  372 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL----NYRRILLTKLDEA----  372 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC----CCCEEEEEcccCC----
Confidence            99999994321    111222222     23357889998753  22233333333221    1235678999964    


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcC
Q 027382          138 VPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      ...-.+-......+.|+..++.
T Consensus       373 ~~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        373 DFLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             CCccHHHHHHHHHCCCEEEEec
Confidence            2345577777788888666643

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.67  E-value=0.00046  Score=54.44  Aligned_cols=139  Identities=17%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC----CC-----------------ccCCcceeeEEEEE--E-------E-CCeEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS----VD-----------------SKATIGVEFQTKTL--S-------I-DHKTV   64 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~----~~-----------------~~~~~~~~~~~~~~--~-------~-~~~~~   64 (224)
                      -+++++|++|+||||++..+......    ..                 +....+..+....-  .       + ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999887553110    00                 00001111111000  0       0 01246


Q ss_pred             EEEEEeCCChhhhh----hhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382           65 KAQIWDTAGQERYR----AVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV  138 (224)
Q Consensus        65 ~~~l~D~~G~~~~~----~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~  138 (224)
                      .+.++||+|.....    ..+..++  ...+-+++|+|++.  ....+..++..+...    -+--++.||.|...    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~~----~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKDI----HIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCCC----CCCEEEEEeecCCC----
Confidence            89999999954221    1112222  24567899999873  122233333334331    22356789999653    


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382          139 PTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      ..-.+-.++...+.|+..++  +|.++.
T Consensus       226 ~~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        226 SSGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence            34567777778888866664  244444

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.65  E-value=0.00046  Score=52.50  Aligned_cols=78  Identities=24%  Similarity=0.196  Sum_probs=49.1

Q ss_pred             EEEEEEeC-CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           64 VKAQIWDT-AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        64 ~~~~l~D~-~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      ..+.++|| +|.+.+   -+.....+|.+|.|+|++- .++..+++.-+...+..  -.++.+|+||.|-.      ...
T Consensus       134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~------e~~  201 (255)
T COG3640         134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE------EEL  201 (255)
T ss_pred             CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch------hHH
Confidence            33555554 233322   2445678999999999986 77777766554444432  26799999999953      334


Q ss_pred             HHHHHHHcCCe
Q 027382          143 AQEFAQRENLF  153 (224)
Q Consensus       143 ~~~~~~~~~~~  153 (224)
                      +...+...+.+
T Consensus       202 ~~~~~~~~~~~  212 (255)
T COG3640         202 LRELAEELGLE  212 (255)
T ss_pred             HHhhhhccCCe
Confidence            55555555543

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.62  E-value=5.8e-05  Score=59.50  Aligned_cols=61  Identities=25%  Similarity=0.414  Sum_probs=39.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----ccCCcceeeEEEE-EEECCeEEEEEEEeCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----SKATIGVEFQTKT-LSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G   73 (224)
                      .+..++++|+|-||+|||||+|++........    ..+-.|.+..... +.+... -.+.++||||
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPG  205 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPG  205 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCC
Confidence            45778999999999999999999876443222    1122244444433 333222 2478999999

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.00063  Score=44.47  Aligned_cols=76  Identities=22%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-hHhHhcCCCEEEEEEe
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYD   96 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~vi~v~d   96 (224)
                      +++.|..|+||||+...+...-...      +...    ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999998887543211      1111    1111    7899999985433221 2456678899999998


Q ss_pred             CCChhhHHHHHH
Q 027382           97 MTKRQSFDHMAR  108 (224)
Q Consensus        97 ~~~~~s~~~~~~  108 (224)
                      ... .+......
T Consensus        68 ~~~-~~~~~~~~   78 (99)
T cd01983          68 PEA-LAVLGARR   78 (99)
T ss_pred             Cch-hhHHHHHH
Confidence            865 44444443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.59  E-value=0.0027  Score=46.99  Aligned_cols=87  Identities=17%  Similarity=0.115  Sum_probs=48.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEE--EEeCC-ChhhhhhhhHhHhcCCCEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQ--IWDTA-GQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~D~~-G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      .++++|+.|+|||||++.+.+...+..     |.      +.+++..+.+.  ..+.+ |+...-.+....+.+.+.+++
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            579999999999999999987543221     11      11112111111  11134 344445566677777775444


Q ss_pred             E--EeCCChhhHHHHHHHHHHHH
Q 027382           94 V--YDMTKRQSFDHMARWLDELR  114 (224)
Q Consensus        94 v--~d~~~~~s~~~~~~~~~~~~  114 (224)
                      =  ...-|+.+...+.+++..+.
T Consensus        96 DEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          96 DEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHH
Confidence            1  11224556666666666554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.56  E-value=0.00091  Score=47.00  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -.+++.|++|+|||+|++.+.....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4589999999999999999987553

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.55  E-value=0.00054  Score=46.20  Aligned_cols=100  Identities=21%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh
Q 027382           21 IGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR  100 (224)
Q Consensus        21 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~  100 (224)
                      =+..|+||||+.-.|...-....     |........+..... .+.++|+|+....  .....+..+|.++++.+.+- 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence            35678999998777654221110     111111111111111 7899999985432  34457788999999987754 


Q ss_pred             hhHHHHHHHHHHHHhcCCC-CCcEEEEEeC
Q 027382          101 QSFDHMARWLDELRGHADK-NIVIMLIGNK  129 (224)
Q Consensus       101 ~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK  129 (224)
                      .+...+..+++.+.+.... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6777777777777665433 3456677764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.53  E-value=0.0047  Score=44.89  Aligned_cols=140  Identities=10%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEe-CCChhhhhhhhHhHhcCCCE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD-TAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .-+.-.|+++|..+.++..|.+++.....  .        +.          +++++-- .|=..    .....-...|.
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~~----------l~Vh~a~sLPLp~----e~~~lRprIDl   67 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDK--E--------FK----------LKVHLAKSLPLPS----ENNNLRPRIDL   67 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhcc--c--------ee----------EEEEEeccCCCcc----cccCCCceeEE
Confidence            34578899999999999999999985221  0        01          1111111 01000    01112346899


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      |+|++|.....++..++.-+..+.-..-.+. +.++++-....+...+...++.+++..+++|++...-.+..+...+-.
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            9999999999999999988776654433333 455556666555567889999999999999999998877776665555


Q ss_pred             HHHHHH
Q 027382          171 TVLTEI  176 (224)
Q Consensus       171 ~i~~~i  176 (224)
                      .+++.+
T Consensus       147 RLL~~l  152 (176)
T PF11111_consen  147 RLLRML  152 (176)
T ss_pred             HHHHHH
Confidence            555443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.50  E-value=0.001  Score=55.14  Aligned_cols=116  Identities=19%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCccCC-----------cceeeEEEEEE-----E------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS----------VDSKAT-----------IGVEFQTKTLS-----I------   59 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~~~-----------~~~~~~~~~~~-----~------   59 (224)
                      ...+..|+++|-.|+||||..-.|...-..          ..|.|.           .+..++.....     +      
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            456778999999999999998776542110          011111           02222221000     0      


Q ss_pred             --CCeEEEEEEEeCCChhhhhhhhH------hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           60 --DHKTVKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        60 --~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                        ....+.+.++||+|........-      ...-+.|-+++|+|+.-..........+   .+..+  + --+|++|.|
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF---~e~l~--i-tGvIlTKlD  250 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAF---NEALG--I-TGVILTKLD  250 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHH---hhhcC--C-ceEEEEccc
Confidence              02236899999999544322211      1123678899999997654433333322   22111  1 256679999


Q ss_pred             CC
Q 027382          132 LG  133 (224)
Q Consensus       132 ~~  133 (224)
                      -.
T Consensus       251 Gd  252 (451)
T COG0541         251 GD  252 (451)
T ss_pred             CC
Confidence            74

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.49  E-value=0.00019  Score=50.11  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|.|++|+|||++++++....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999998754

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.47  E-value=0.0018  Score=47.93  Aligned_cols=86  Identities=21%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE  141 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~  141 (224)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+...+..+++.+.+.   +.|+.+|+|+.|...   ....
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            5678999999975322  34456788999999998874 5666677777666653   467889999999743   2345


Q ss_pred             HHHHHHHHcCCeEEE
Q 027382          142 DAQEFAQRENLFFME  156 (224)
Q Consensus       142 ~~~~~~~~~~~~~~~  156 (224)
                      ++++++++.+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            688888888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.39  E-value=0.0019  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.38  E-value=0.00019  Score=54.52  Aligned_cols=31  Identities=35%  Similarity=0.427  Sum_probs=24.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ..+.....-|+|+|++|||||||++.|....
T Consensus         7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738          7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            3445566678899999999999999997643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.38  E-value=0.0048  Score=50.55  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.38  E-value=0.00017  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.36  E-value=0.0079  Score=44.18  Aligned_cols=84  Identities=13%  Similarity=0.010  Sum_probs=53.0

Q ss_pred             EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027382           65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ  144 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~  144 (224)
                      .+.++|+|+....  .....+..+|.+|++++.+. .++..+..+++.+....  .....+++|+.+....  ...+..+
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence            7899999975433  24455788999999998865 55666666666665532  2346788999986432  1222234


Q ss_pred             HHHHHcCCeEE
Q 027382          145 EFAQRENLFFM  155 (224)
Q Consensus       145 ~~~~~~~~~~~  155 (224)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            55555666544

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.35  E-value=0.01  Score=42.28  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            36899999999999999998765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.34  E-value=8.2e-05  Score=56.43  Aligned_cols=69  Identities=14%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             EEEEEEEeCCChhhhh------hhhHhHhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           63 TVKAQIWDTAGQERYR------AVTSAYYRGAVGAMLVYDMT------KRQSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~------~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      .-.+.++|+|||-++.      ......+.+-|.=+.++...      +|..+-  ..++..+.....-..|-+-|..|+
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHh
Confidence            3468899999965441      11222333455544444443      344432  223333332222368889999999


Q ss_pred             CCC
Q 027382          131 DLG  133 (224)
Q Consensus       131 D~~  133 (224)
                      |+-
T Consensus       174 Dl~  176 (290)
T KOG1533|consen  174 DLL  176 (290)
T ss_pred             HHH
Confidence            973

>PRK08118 topology modulation protein; Reviewed

Probab=97.32  E-value=0.0002  Score=52.50  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +|+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.29  E-value=0.0016  Score=45.68  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.28  E-value=0.00023  Score=52.68  Aligned_cols=23  Identities=26%  Similarity=0.677  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+|+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.28  E-value=0.00031  Score=42.15  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..+|.|+.|+|||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999998864

>PRK07261 topology modulation protein; Provisional

Probab=97.27  E-value=0.00025  Score=52.17  Aligned_cols=22  Identities=36%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +|+|+|.+|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.24  E-value=0.00026  Score=50.21  Aligned_cols=21  Identities=38%  Similarity=0.657  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+++|++|||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999843

...

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.0023  Score=51.36  Aligned_cols=145  Identities=15%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-------CC--------------cceeeEEEEE-------EE----
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-------AT--------------IGVEFQTKTL-------SI----   59 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~--------------~~~~~~~~~~-------~~----   59 (224)
                      ...++-|+++|-.|+||||-|-.|...-......       ++              .|..+.....       -+    
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            3458889999999999999988775522111110       00              0222211110       00    


Q ss_pred             --CCeEEEEEEEeCCChhhhhhh-------hHhHhcCCCE-----EEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEE
Q 027382           60 --DHKTVKAQIWDTAGQERYRAV-------TSAYYRGAVG-----AMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIM  124 (224)
Q Consensus        60 --~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~d~-----vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~i  124 (224)
                        ....+.+.++||+|.-.-...       .....+..+.     ++++.|++- ..++.+++.+.+.+ .      ---
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~------l~G  288 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-G------LDG  288 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-C------Cce
Confidence              123578999999993211111       2223333433     888889876 45566555433222 1      135


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382          125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus       125 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +++||.|-..    ..--+-..+...++|+..+-.  |++++++.
T Consensus       289 iIlTKlDgtA----KGG~il~I~~~l~~PI~fiGv--GE~~~DL~  327 (340)
T COG0552         289 IILTKLDGTA----KGGIILSIAYELGIPIKFIGV--GEGYDDLR  327 (340)
T ss_pred             EEEEecccCC----CcceeeeHHHHhCCCEEEEeC--CCChhhcc
Confidence            6789999532    122355666778888666643  55555553

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.00038  Score=53.51  Aligned_cols=23  Identities=43%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      |.++|++|||||||++.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            79999999999999999988554

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.20  E-value=0.003  Score=50.20  Aligned_cols=105  Identities=19%  Similarity=0.255  Sum_probs=62.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------------
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-----------------   73 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------------   73 (224)
                      +..+.-+++++|++|.|||++++++....... ..+. .            ..+.+.++..|.                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            34456679999999999999999999866432 2111 1            122344445443                 


Q ss_pred             -------hhhhhhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeC
Q 027382           74 -------QERYRAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHAD-KNIVIMLIGNK  129 (224)
Q Consensus        74 -------~~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK  129 (224)
                             ...........++....=++++|--.   ..+....+..++.++...+ -.+|++.+++.
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                   11112233455677777778887432   2334444555555555443 47889988865

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.15  E-value=0.00048  Score=42.56  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      |++.|.+|+||||+.++|...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999998653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.14  E-value=0.00027  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.12  E-value=0.00061  Score=51.33  Aligned_cols=24  Identities=46%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|++|||||||++.+.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            489999999999999999977554

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.12  E-value=0.00044  Score=51.63  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .=|+|+|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348999999999999999998754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.12  E-value=0.00053  Score=52.34  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      |+|+|++|||||||+|-+-+-..
T Consensus        34 vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcccC
Confidence            89999999999999999976543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.00028  Score=51.87  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .-++|.|++|+|||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999876

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.09  E-value=0.00062  Score=48.20  Aligned_cols=21  Identities=52%  Similarity=0.748  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10646 ADP-binding protein; Provisional

Probab=97.07  E-value=0.006  Score=43.80  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999997643

>PRK04195 replication factor C large subunit; Provisional

Probab=97.06  E-value=0.017  Score=49.79  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .--++|.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3458999999999999999997643

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.06  E-value=0.00054  Score=48.23  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            47999999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.05  E-value=0.0022  Score=46.60  Aligned_cols=56  Identities=32%  Similarity=0.314  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      .+++.|++|+|||||++.+..--.     ++.|      .+.+.++++.     +-+.+.|+.....+....
T Consensus        31 ~iaitGPSG~GKStllk~va~Lis-----p~~G------~l~f~Ge~vs-----~~~pea~Rq~VsY~~Q~p   86 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLIS-----PTSG------TLLFEGEDVS-----TLKPEAYRQQVSYCAQTP   86 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccC-----CCCc------eEEEcCcccc-----ccChHHHHHHHHHHHcCc
Confidence            479999999999999999975432     1212      2224444433     556677776666665444

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.02  E-value=0.0083  Score=45.94  Aligned_cols=103  Identities=10%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      .+.+.++|+.|....  .....+..+|.+|+=.-.+.  -+.......|+..+.+.....+|.-++.|+..-.. .....
T Consensus        83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence            367899999885422  34556678998888666653  33333344455555544456799999999987421 11112


Q ss_pred             HHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382          141 EDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus       141 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      ..+.++..  ++|++.+...+..-..++|.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22334443  48888888776665555555

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.00  E-value=0.0046  Score=43.93  Aligned_cols=26  Identities=31%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .--|++-|+-|+|||||.+.+...-.
T Consensus        25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          25 GDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            34578999999999999999876543

>PRK01889 GTPase RsgA; Reviewed

Probab=96.99  E-value=0.00082  Score=55.37  Aligned_cols=25  Identities=40%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -+++++|.+|+|||||+|.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3789999999999999999997544

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.97  E-value=0.0045  Score=46.68  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      |+|+|++||||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.95  E-value=0.00069  Score=55.31  Aligned_cols=81  Identities=16%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC--hhhhhhhhHhHhcCCCEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG--QERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--~~~~~~~~~~~~~~~d~vi~   93 (224)
                      |-|.++|-|++||||+||.|-.... ....|-.|.+--...+.+-.   .+-++|+||  .....+.....++   +++-
T Consensus       308 ISVGfiGYPNvGKSSiINTLR~KkV-CkvAPIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLk---GvVR  380 (572)
T KOG2423|consen  308 ISVGFIGYPNVGKSSIINTLRKKKV-CKVAPIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLK---GVVR  380 (572)
T ss_pred             eeeeeecCCCCchHHHHHHHhhccc-ccccCCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhh---ceee


Q ss_pred             EEeCCChhhH
Q 027382           94 VYDMTKRQSF  103 (224)
Q Consensus        94 v~d~~~~~s~  103 (224)
                      |=++.+|+.+
T Consensus       381 Venv~~pe~y  390 (572)
T KOG2423|consen  381 VENVKNPEDY  390 (572)
T ss_pred             eeecCCHHHH

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.95  E-value=0.00086  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS   41 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~   41 (224)
                      .++++|++|+||||++..+......
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCC
Confidence            6899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.94  E-value=0.013  Score=46.77  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027382           17 KVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (224)
                      .|+|.|.+||||||+++.|-
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999995

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.93  E-value=0.00073  Score=46.78  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999765

...

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.012  Score=49.27  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=23.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ...-+|+|+|+.|+|||||+.-|++.-.
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCCC
Confidence            3445799999999999999999998554

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.92  E-value=0.00078  Score=52.04  Aligned_cols=28  Identities=29%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -+..++++|+|.+|||||+|+..++...
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            3567899999999999999999998643

This is thought to be an ATPase involved in viral DNA packaging [].

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.92  E-value=0.0025  Score=43.99  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            448999999999999999987643

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.91  E-value=0.00087  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .|+|+|+.|+|||||+..|++.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998754

>PRK06217 hypothetical protein; Validated

Probab=96.90  E-value=0.00092  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+|+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.90  E-value=0.00093  Score=49.84  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .|+|+|++|||||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.90  E-value=0.0012  Score=48.62  Aligned_cols=25  Identities=40%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS   41 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~   41 (224)
                      .++|+|++|+|||||+|-+.+-..+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P   51 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETP   51 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccCC
Confidence            5899999999999999999875543

>TIGR00235 udk uridine kinase

Probab=96.89  E-value=0.0011  Score=50.44  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +...-|+|+|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            44466999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.88  E-value=0.00096  Score=44.85  Aligned_cols=20  Identities=35%  Similarity=0.660  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027382           17 KVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (224)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.88  E-value=0.00089  Score=49.53  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.85  E-value=0.0023  Score=51.99  Aligned_cols=94  Identities=15%  Similarity=0.059  Sum_probs=61.2

Q ss_pred             eCCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027382           70 DTAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ  148 (224)
Q Consensus        70 D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~  148 (224)
                      +.||+. .+.......+..+|+++.|+|+-+|.+...-.  +..+..    ..|.++|+||.|+.+.. ...+-.+.|.+
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~--l~~~v~----~k~~i~vlNK~DL~~~~-~~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE--LERIVK----EKPKLLVLNKADLAPKE-VTKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc--HHHHHc----cCCcEEEEehhhcCCHH-HHHHHHHHHHh
Confidence            346754 55667888899999999999999976543211  111222    35559999999997522 22333444455


Q ss_pred             HcCCeEEEEcCCCCCCHHHHHH
Q 027382          149 RENLFFMETSALEATNVETAFL  170 (224)
Q Consensus       149 ~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +.+...+.++++.+.+...+..
T Consensus        89 ~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          89 EEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             cCCCccEEEEeecccCccchHH
Confidence            5566678888887776665554

>PRK03839 putative kinase; Provisional

Probab=96.85  E-value=0.001  Score=49.30  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +|+++|.+||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.0013  Score=53.33  Aligned_cols=23  Identities=52%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|++|||||||++.+.+-..
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999988543

>PRK14530 adenylate kinase; Provisional

Probab=96.82  E-value=0.0012  Score=50.54  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.81  E-value=0.00092  Score=47.31  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+...||+|.|.||+|||||..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            36678999999999999999999974

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.80  E-value=0.0012  Score=49.22  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .-.++++|++|+|||||++.+++..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468999999999999999998654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.80  E-value=0.0013  Score=48.62  Aligned_cols=22  Identities=36%  Similarity=0.321  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.++|+|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4589999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.79  E-value=0.0012  Score=48.84  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.78  E-value=0.0011  Score=49.88  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      |+|.|++|||||||.+.|.+.-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999997643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.78  E-value=0.0077  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|+.|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.77  E-value=0.011  Score=46.58  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|+|.|++|+||||+++.++..-
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            48999999999999999998654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.77  E-value=0.0012  Score=51.49  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|+.|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999873

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.76  E-value=0.0012  Score=49.02  Aligned_cols=21  Identities=14%  Similarity=0.396  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+++|.+||||||+++.|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999973

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.76  E-value=0.0014  Score=49.86  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ....|+|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998864

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.75  E-value=0.0092  Score=43.94  Aligned_cols=42  Identities=19%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             CEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           89 VGAMLVYDMTKRQSF--DHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        89 d~vi~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      |++++|+|+.++.+-  ..+.+.+. +.   ..+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~-l~---~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVL-QA---GGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHH-hc---cCCCCEEEEEehhhcCC
Confidence            789999999885332  22222221 21   22589999999999953

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.74  E-value=0.009  Score=46.17  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-++++.|+.|+||||+++++++.
T Consensus        51 pannvLL~G~rGtGKSSlVkall~~   75 (249)
T PF05673_consen   51 PANNVLLWGARGTGKSSLVKALLNE   75 (249)
T ss_pred             CCcceEEecCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999863

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.74  E-value=0.0095  Score=48.79  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ...+|+|.|++|||||||++.|++.-
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            35679999999999999999998754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.73  E-value=0.0015  Score=46.17  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK13949 shikimate kinase; Provisional

Probab=96.72  E-value=0.0015  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +|+|+|++|||||||.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-70
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-68
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-67
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-67
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-66
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-65
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-65
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-64
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-63
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-60
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-60
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-57
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-49
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-49
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-48
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-48
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-46
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-46
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-46
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-46
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-46
4fmc_B	171	Espg-Rab1 Complex Length = 171		7e-46
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-46
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-45
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-44
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-44
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-44
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-44
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-44
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-43
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-43
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-43
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-42
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		7e-41
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-40
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-39
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-39
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-39
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-39
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-39
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-39
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-39
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-38
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-38
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-38
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-38
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-38
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-38
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-38
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-38
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-38
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-38
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-37
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-37
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-36
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-36
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-36
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-35
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-35
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-35
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-35
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-35
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		9e-35
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-34
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-34
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-34
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-34
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-34
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-33
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-33
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-33
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-33
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-32
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-32
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		6e-31
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-30
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-30
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-30
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-30
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-30
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-30
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-30
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		9e-30
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-29
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		7e-29
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-28
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-28
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-26
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-25
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-21
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		8e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		9e-21
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-19
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-19
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-19
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		6e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-19
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-19
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-19
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-18
1byu_A	216	Canine Gdp-Ran Length = 216		2e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-18
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-18
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-18
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-18
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-18
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		8e-17
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-16
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-16
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-16
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-16
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-16
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-16
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-16
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		5e-16
1wq1_R	166	Ras-Rasgap Complex Length = 166		5e-16
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-16
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-16
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-16
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-16
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		8e-16
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-15
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-15
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-15
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-15
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-15
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-15
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		7e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-14
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-14
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		7e-14
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		8e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		9e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		9e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-13
1mh1_A	186	Small G-Protein Length = 186		2e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		5e-13
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		6e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		6e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		8e-13
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-12
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-12
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		6e-12
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		8e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		8e-11
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-09
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		8e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-08
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-08
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		5e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		6e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		6e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		9e-08
2kb0_A	178	Cdc42(T35a) Length = 178		9e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		9e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-07
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		9e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-06
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		3e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		4e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		1e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		8e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		8e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		8e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		3e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		7e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		8e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		8e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		8e-04

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 159/196 (81%), Gaps = 3/196 (1%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYR +TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
             LRAVPT++A+ FA++ NL F+ETSAL++TNVE AF  +LTEIYRI+S+K +     HD
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 193 VAGNSNLLKGTRIIVP 208
            +  +N++    I VP
Sbjct: 183 ESPGNNVVD---ISVP 195

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  253 bits (646), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 145/167 (86%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 18  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 78  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
             LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIYRI
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  250 bits (638), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 144/167 (86%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 6   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           G ERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 66  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
             LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIYRI
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  250 bits (638), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 146/172 (84%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 20  GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
           AQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML
Sbjct: 80  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           +GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  246 bits (629), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 145/172 (84%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 20  GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
           AQIWDTAG ERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML
Sbjct: 80  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           +GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 144/172 (83%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 2   GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
           AQIWDTAG ERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVI L
Sbjct: 62  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXL 121
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           +GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 141/165 (85%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           G ERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVI L+GNK DL
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
             LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/184 (62%), Positives = 148/184 (80%), Gaps = 4/184 (2%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTV 64
           GDY    DY+FK+VLIGDS VGKS LL+RF R+EF+++SK+TIGVEF TK++ + ++K +
Sbjct: 1   GDY---YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKII 57
Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
           KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+TK+ SF+++ +WL ELR +AD NIVI+
Sbjct: 58  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVIL 117
Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           L+GNK DL  LR +   DA ++A++E L F+ETSALEATNVE AF  +L EIY +  KK 
Sbjct: 118 LVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177
Query: 185 LTAN 188
            T N
Sbjct: 178 ATKN 181

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/220 (53%), Positives = 154/220 (70%), Gaps = 6/220 (2%)
Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           DY    D +FK+VLIGDS VGKS LL+RF +NEF++DSK+TIGVEF T+TL I+ K +KA
Sbjct: 5   DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKA 64
Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI 126
           QIWDTAGQERYRA+TSAYYRGAVGA++VYD++K  S+++   WL ELR +AD N+ + LI
Sbjct: 65  QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI 124
Query: 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLT 186
           GNK DL  LRAVPTE+++ FAQ   L F ETSAL + NV+ AF  ++  IY+ +SK  + 
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184
Query: 187 ANDEHDVAGNSN---LLKGTRI-IVPGQDQN-SASKRGCC 221
             D     GN+N      G  I + P  ++N  A+   CC
Sbjct: 185 LGDS-SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/178 (60%), Positives = 138/178 (77%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G + +  ++VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ +    VK
Sbjct: 1   GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
           AQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  + RWL EL  HA+  IV+ML
Sbjct: 61  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           +GNK DL   R VPTE+A+ FA+   L F+ETSAL++TNVE AF TVL EI+  +SK+
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  228 bits (580), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 137/177 (77%), Gaps = 4/177 (2%)
Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           DYN    +VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ +    VKA
Sbjct: 21  DYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI 126
           QIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  + RWL EL  HA+  IV+ML+
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           GNK DL   R VPTE+A+ FA+   L F+ETSAL++TNVE AF TVL EI+  +SK+
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 135/170 (79%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK+VLIGDS VGKS LL+RF  +EF+++SK+TIGVEF T+T+ +++K +KAQIWDTA
Sbjct: 8   DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           G ERYRA+TSAYYRGAVGA++VYD++K  S+++   WL ELR +AD N+ + LIGNK DL
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
             LRAVPT++A+ FA    + F ETSAL + NV+ AF  ++  I++++SK
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 145/215 (67%), Gaps = 13/215 (6%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIG+S VGKS LL RF+ + ++ D  +TIGV+F+ KT+ +D KTVK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ +  WL E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL--T 186
           KCDL   R V  + A+EFA    + F+ETSAL++TNVE AFLT+  +I   +S+++L  T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 ANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
              + D  GN N LKG  +   G         GCC
Sbjct: 182 TQKKED-KGNVN-LKGQSLTNTG---------GCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 145/215 (67%), Gaps = 12/215 (5%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIG+S VGKS LL RF+ + ++ D  +TIGV+F+ KT+ +D KTVK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ +  WL E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL--T 186
           KCDL   R V  + A+EFA    + F+ETSAL++TNVE AFLT+  +I   +S+++L  T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 ANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
              + D  GN N LKG  +   G         GCC
Sbjct: 182 TQKKED-KGNVN-LKGQSLTNTGG--------GCC 206

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 118/169 (69%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H+  N+VIMLIGNK DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
           S R V  E+ + FA+   L FMETSA  A NVE AF+    EIYR I +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 116/164 (70%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL 
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           S R V  E+ + FA+   L FMETSA  A+NVE AF+    EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 126/170 (74%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           KCDL + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 125/168 (74%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+S+++KTVK QI
Sbjct: 3   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T R SFD++ +W+ E+  +A +N+  +L+GN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           KCDL S R V +++ +E A    + F+ETSA  A NVE AF T+  EI
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 125/168 (74%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGK+ LL RFA + ++    +TIGV+F+ +T+ +D KT+K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           KCDL + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIG+S VGKS LL RF+ + ++ D  +TIGV+F+ KT+ +D KTVK QIWDTA
Sbjct: 19  DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ +  WL E+  +A   ++ +L+GNKCDL
Sbjct: 79  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              R V  + A+EFA    + F+ETSAL++TNVE AFLT+  +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 123/168 (73%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           KCDL + + V    A+EFA    + F+ETSA  ATNVE +F T   EI
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 23  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL
Sbjct: 83  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 114/165 (69%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF T+ + +  + +K QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R   + N VI+LIGNK DL 
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           + R V  E+A++FA+   L F+E SA    NVE AFL    +IY+
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 124/168 (73%)
Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+G 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           KCDL + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  176 bits (447), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 122/164 (74%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D +FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 4   DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 114/167 (68%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF T+ + +  + +K QIWDTAG
Sbjct: 29  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           Q R+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R   + N VI+LIGNK DL 
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           + R V  E+A++FA+   L F+E SA    NVE AFL    +IY+ I
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 121/164 (73%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + + V    A+EFA    + F+ETSA  ATNVE AF+T+  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 121/164 (73%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + + V    A+EFA    + F+ETSA  ATNVE AF+T+  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK ++IG +  GKS LL +F  N+F  DS  TIGVEF ++ +++  KTVK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R+VT +YYRGA GA+LVYD+T R++++ +A WL + R  A  NIV++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL----TVLTEI 176
              R V   +A  FAQ   L F+ETSAL   NVE AFL    T+L +I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           GD +++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I  K VK
Sbjct: 20  GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 79
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            QIWDTAGQER+R +T +YYR A GA+L YD+TKR SF  +  W++++R +A  NIV +L
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFF-METSALEATNVETAFLTVLTEI 176
           IGNK DL  LR V   +AQ  A+  ++   +ETSA +++NVE AFL V TE+
Sbjct: 140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 119/160 (74%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           +R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL + +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            V    A+EFA    + F+ETSA  ATNVE +F+T+  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 12  IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
           +DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDT
Sbjct: 3   MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           AGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           +   R V  E  ++ A    + FMETSA    NVE AF T+  +I   + KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 118/180 (65%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  ++  D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
            GNK DL + R V   +A  FAQ   L F+ETSAL   NVE AF+    +I   I    L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  169 bits (429), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              R V  E  ++ A    + FMETSA    NVE AF T+  +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTA
Sbjct: 9   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL
Sbjct: 69  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + R V   +A  FAQ   L F+ETSAL   +VE AF+    +I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 112/164 (68%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTA
Sbjct: 6   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           G ER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL
Sbjct: 66  GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            + R V   +A  FAQ   L F+ETSAL   +VE AF+    +I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 108/163 (66%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+GD   GKS L+ RF +++F    ++TIG  F ++TL+++  TVK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           Y ++   YYRGA  A++V+D+T + SF+   +W+ EL+   + N+V+ L GNK DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
            V  EDAQ +AQ   LFFMETSA  ATNV+  F  +   + R+
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
              R V  + A+EF++ ++++++ETSA E+ NVE  FL +     R+IS+
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISE 190

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 104/157 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           RAV  ++AQ +A   +L FMETSA  A NV   F+ +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+S VGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+S VGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+S VGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 3   NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK 62
           NLY  +    DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K
Sbjct: 13  NLY--FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 63  TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV 122
            VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  
Sbjct: 71  RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130
Query: 123 IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           ++L+GNKCD+   R VPTE  Q  A++    F E SA E  +V  AF
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+S VGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+S VGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+++ +D  TVK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T +++F     W+ EL+  A  +IVI L GNK DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           R V  E+AQ +A   +L FMETSA  A NV   FL +  ++ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 103/157 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           RAV  ++AQ +A   +L FMETSA  A NV   F+ +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 103/157 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TI   F T+T+ +D  TVK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           RAV  ++AQ +A   +L FMETSA  A NV   F+ +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           RAV  ++AQ +A   +L F ETSA  + NV         EI+  I+KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNV--------NEIFXAIAKK 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 104/157 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GNK D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              + V TEDA +FA +  +   ETSA E  NVE  F   +TE+
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITEL 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 104/161 (64%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV L+GD+ VGKS ++ RF ++ F  +   TIG  F TKT+   ++  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+ ++   YYRG+  A++VYD+TK+ SF  + +W+ EL+ H  +NIV+ + GNKCDL  +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R VP +DA+E+A+      +ETSA  A N+E  F  +  +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDT 71
           D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K L +D   VK Q+WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           AGQER+R+VT AYYR A   +L+YD+T + SFD++  WL E+  +A  ++ +ML+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
               R V  ED ++ A+   L FMETSA    NV+ AF  +  E+ R
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 105/157 (66%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYR +T+AYYRGA+G +L+YD+  ++SF  +  W  +++ ++  N  ++L+GNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
              R VP ED +  A      F E SA E  NV+  F
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
            + R V  +  +  A+   + F+E+SA    NV   F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 107/158 (67%)
Query: 12  IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
            DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           AGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           +   R V +E  ++ A      F E SA +  NV+  F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK Q+WDTA
Sbjct: 18  DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D+
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
            + R V  +  +  A+   + F+E+SA    NV   F T+   I   I    L  
Sbjct: 138 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVG 191

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV L+GD+ VGKS ++ RF  + F  +   TIG  F TKT+   ++  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+RA+   YYRG+  A++VYD+TK ++F  +  W+ ELR H   +IV+ + GNKCDL  +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           R V   DA+++A   +  F+ETSA  A N+   F+ +
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           ER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D+ +
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
            R V  +  +  A+   + F+E+SA    NV   F T+
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
            + R V  +  +  A+   + F+E+SA    NV   F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 98/157 (62%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV L+GD+ VGKS ++ RF  + F  +   TIG  F TKT+   ++  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+RA+   YYRG+  A++VYD+TK ++F  +  W+ ELR H   +IV+ + GNKCDL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           R V   DA+++A   +  F+ETSA  A N+   F+ +
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 103/154 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V +G+ AVGK+ ++ RF  + F  + ++TIG++F +KTL +D   V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T RQSF++  +W+ ++     K+++I L+GNK DLG L
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           R V  E+  + AQ  N  F ETSA    N++  F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+G++AVGKS ++ RF  N+F+ + + TIG  F T+ ++I+  TVK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL---G 133
           + ++   YYR A  A++VYD+TK QSF     W+ EL   A K+I+I L+GNK D    G
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
             R V  E+ ++ A+ + L F ETSA    NV   FL +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
            + R V  +  +  A+   + F+E+SA    NV   F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           GD+   +   FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +TV+
Sbjct: 6   GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 64
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            Q+WDTAGQER+R++  +Y R +  A++VYD+T   SF   ++W+D++R     +++IML
Sbjct: 65  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           +GNK DL   R V TE+ +  A+  N+ F+ETSA    NV+  F  V
Sbjct: 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 111/167 (66%), Gaps = 1/167 (0%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D+  +V++IG   VGK+ L+ RF  + F    K+T+GV+F+ KT+ +  K ++ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+ ++TSAYYR A G +LVYD+TK+++FD + +W+  +  +A ++  ++L+GNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 133 GSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
            + R +  +  ++FAQ+   + F E SA +  NV+  FL ++ +I +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 102/158 (64%)
Query: 12  IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
            DY FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           AG ERYR +T+AYYRGA G +L YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
               R V +E  ++ A      F E SA +  NV+  F
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 103/157 (65%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +T++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML+GNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           R V  E+ +  A+  N+ F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+++IG+S VGKS LL RF  + F  +  ATIGV+F+ KT+S+D    K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDLGS 134
           R+R +T +YYRGA G +LVYD+T+R +F  +  WL+EL  +  +N IV  L+GNK D  +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V   +  +FA++ +  F+E SA     V+ AF  ++ +I
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 102/154 (66%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +TV+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML+GNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           R V  E+ +  A+  N+ F+ETSA    NV+  F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 104/154 (67%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +TV+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T   SF   ++W+D++R     +++IML+GNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           R +  E+ ++ A+  ++ F+ETSA    NV+  F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 114/188 (60%), Gaps = 1/188 (0%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           GD+   +   FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +T++
Sbjct: 5   GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR 63
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            Q+WDTAG ER+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML
Sbjct: 64  LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
           +GNK DL   R V  E+ +  A+  N+ F+ETSA    NV+  F  V   +  + S +  
Sbjct: 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR 183
Query: 186 TANDEHDV 193
           +  D  D+
Sbjct: 184 SREDMIDI 191

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 114/188 (60%), Gaps = 1/188 (0%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           GD+   +   FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +TV+
Sbjct: 8   GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 66
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            Q+WDTAG ER+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
           +GNK DL   R V  E+ +  A+  N+ F+ETSA    NV+  F  V   +  + S +  
Sbjct: 127 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR 186
Query: 186 TANDEHDV 193
           +  D  D+
Sbjct: 187 SREDMIDI 194

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 91/115 (79%)
Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           ++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78  RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNKCDL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 102/157 (64%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +TV+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML+GNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
           R V  E+ +  A+  N+ F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+VL GD+AVGKS  L R  +NEF  +  AT+GV+FQ KTL +D +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y+R A G +L+YD+T  +SF ++  W+D +   A + + IML+GNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 136 RA------VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            A      VP    ++ A      F ETSA + +N+  A L +  E+ +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 5/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK+++IGDS VGK+ L  RF    F   ++ATIGV+F+ + + ID + +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75  ERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDL 132
           ER+R ++   YYR     + VYDMT   SF  +  W++E + H   N I  +L+GNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATN---VETAFLTV 172
            S   VPT+ AQ+FA   ++   ETSA    +   VE  F+T+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK+++IGDS VGK+ L  RF    F   ++ATIGV+F+ + + ID + +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 75  ERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDL 132
           ER+R ++   YYR     + VYD T   SF  +  W++E + H   N I  +L+GNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATN---VETAFLTV 172
            S   VPT+ AQ+FA   +    ETSA    +   VE  F T+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
           ER++++  A+YRGA   +LV+D+T   +F  +  W DE    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
           DL + R V T+ AQ +   + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
           ER++++  A+YRGA   +LV+D+T   +F  +  W DE    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
           DL + R V T+ AQ +   + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 91/157 (57%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y FKVVL+G+  VGK+ L+ R+  N+F+     T+G  F TK L+I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+ A+   YYR + GA+LVYD+T   SF  +  W+ ELR      I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
             R V  ++A+ +A+        TSA +   +E  FL
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 15/184 (8%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
           GDY    DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  + +   
Sbjct: 20  GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPN 75
Query: 63  -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                   V  Q+WDTAGQER+R++T+A++R A+G +L++D+T +QSF ++  W+ +L+ 
Sbjct: 76  GSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           +A  +N  I+LIGNK DL   R V    A+E A +  + + ETSA    NVE A  T+L 
Sbjct: 136 NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195
Query: 175 EIYR 178
            I +
Sbjct: 196 LIMK 199

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
           GDY    DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  D +   
Sbjct: 6   GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                   V  Q+WDTAG ER+R++T+A++R A+G +L++D+T +QSF ++  W+ +L+ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
Query: 116 HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           +A  +N  I+LIGNK DL   R V    A+E A++  + + ETSA    NVE +  T+L 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISKKSLTANDEHDV-AGNSNLLKGTR 204
            I + + K          V  GNS  L G +
Sbjct: 182 LIMKRMEKCVEKTQVPDTVNGGNSGKLDGEK 212

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
           ER++++  A+YRGA   +LV+D+T   +F  +  W DE    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
           D  + R V T+ AQ +   + N+ + ETSA EA NVE AF T+
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 15/188 (7%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
           GDY    DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  D +   
Sbjct: 6   GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                   V  Q+WDTAG ER+R++T+A++R A+G +L++D+T +QSF ++  W+ +L+ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           +A  +N  I+LIGNK DL   R V    A+E A++  + + ETSA    NVE +  T+L 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
            I + + K
Sbjct: 182 LIMKRMEK 189

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
           ER++++  A+YRGA   +LV+D+T   +F  +  W DE    A     +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
           DL + R V T+ AQ +   + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FKV+L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
           ER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD    ++   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           D+ S R V TE+AQ + +    + + ETSA +ATNV  AF
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 90/157 (57%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y FKVVL+G+  VGK+ L+ R+  N+F+     T+   F TK L+I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+ A+   YYR + GA+LVYD+T   SF  +  W+ ELR      I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
             R V  ++A+ +A+        TSA +   +E  FL
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FKV+L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
           ER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD    ++   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           D+ S R V TE+AQ + +    + + ETSA +ATNV  AF
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 90/157 (57%)
Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y FKVVL+G+  VGK+ L+ R+  N+F+     T+   F TK L+I  K V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+ A+   YYR + GA+LVYD+T   SF  +  W+ ELR      I + ++GNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
             R V  ++A+ +A+        TSA +   +E  FL
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 15/188 (7%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
           GDY    DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  D +   
Sbjct: 6   GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                   V  Q+WDTAG ER+R++T+A++R A G +L +D+T +QSF ++  W  +L+ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           +A  +N  I+LIGNK DL   R V    A+E A++  + + ETSA    NVE +  T+L 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
            I +   K
Sbjct: 182 LIXKRXEK 189

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 15/188 (7%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
           GDY    DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  D +   
Sbjct: 6   GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                   V  Q+WDTAG ER+R++T+A++R A G +L +D+T +QSF ++  W  +L+ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           +A  +N  I+LIGNK DL   R V    A+E A++  + + ETSA    NVE +  T+L 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
            I +   K
Sbjct: 182 LIXKRXEK 189

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK++L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
           ER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD    ++   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           D+   R V TE+AQ + +    + + ETSA ++TNV  AF
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAG 73
           + KV+++GDS VGK+ L+ R+  +++S   KATIG +F TK +++D  K    Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN----IVIMLIGNK 129
           QER++++  A+YRGA   +LVYD+T   SF+++  W DE   HA+ N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 130 CDLGSLRAVPTE-DAQEFAQR-ENLFFMETSALEATNVETAF 169
            D    + + +E  AQE A+   ++    TSA  A NV+TAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+L+GD  VGKS L+ R+  N+F   +  TIGVEF  + L +D + V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
           ER++++ + +YRGA   +L + +  RQSF+++  W  E   +AD    ++   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           D    R V TE+AQ +      + ++ETSA + TNV  AF
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 112/188 (59%), Gaps = 15/188 (7%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----- 60
           GDY    DY+ K + +GDS VGK+ +L ++   +F+     T+G++F+ K +        
Sbjct: 6   GDY----DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 61  -----HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
                 + +  Q+WDTAG ER+R++T+A++R A+G +L++D+T  QSF ++  W+ +L+ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121
Query: 116 HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
           HA  +N  I+L GNK DL   RAV  E+A+E A++  + + ETSA   TN+  A   +L 
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 175 EIYRIISK 182
            I + + +
Sbjct: 182 LIMKRMER 189

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  + + ++ + V+  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
            + A+T AYYRGA   +LV+  T R+SF+ ++ W +++      +I   L+ NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
             +  E+A+  A+R  L F  TS  E  NV        +E+++ +++K L
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNV--------SEVFKYLAEKHL 166

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 40/202 (19%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI---------------- 59
           +K VL+G+S+VGKS ++ R  ++ F  ++  TIG  F T  +++                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60  --------------DHKT-------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT 98
                          H         +K  IWDTAGQERY ++   YYRGA  A++V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 99  KRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS 158
              + D    W+++L+     N +I+L+ NK D    + V   + Q++AQ  NL F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 159 ALEATNVETAFLTVLTEIYRII 180
           A   TN++  F  +  EIY+ I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL   
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL   
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL   
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL   
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+A+  A + N+ ++ETSA    NV+  F  ++ EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
           Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL   
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKN-IVIMLIGNKCDLGS 134
           Y A+   Y+R   G +LV+ +T+ +SF   A + ++ LR  A+++ I ++++GNK DL  
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R VP E+A+  A+   + ++ETSA    NV+  F  ++ EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKN-IVIMLIGNKCDLGS 134
           Y A+   Y+R   G +LV+ +T+ +SF   A + ++ LR  A+++ I ++++GNK DL  
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R VP E+A+  A+   + ++ETSA    NV+  F  ++ EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ +  + ++++   D +++ ++L+GNKCDL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V T+ AQ+ A+   + F+ETSA     V+ AF T++ EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           +Y  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ +  + ++++   D +++ ++L+GNK DL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            R V T+ AQ+ A+   + F+ETSA     V+ AF T++ EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 155

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQ 74
           +K+ LIGD  VGK+  + R     F  +  AT+G      T   D    +K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           E+   +   YY GA GA+L +D+T R +  ++ARW+ E +        I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
            + +  +   E  + +N  + E SA  A N    FL
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++ +D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY----------------RI 179
           +      +  F +++NL + + SA    N E  FL +  ++                  +
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEV 187
Query: 180 ISKKSLTANDEHDV 193
           +   +L A  EHD+
Sbjct: 188 VXDPALAAQYEHDL 201

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF      T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF      T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     ATIGVE    +   +   +K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           R V  +    F +++NL + + SA    N E  FL
Sbjct: 123 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFL 156

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     ATIGVE    +   +   +K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 123
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           R V  +    F +++NL + + SA    N E  FL
Sbjct: 124 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFL 157

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 131
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQ 74
            K+V++GD A GK+ L   FA+  F    K TIG++F  + +++  +  V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCD 131
                +   Y  GA G +LVYD+T  QSF+++  W   + ++   ++   ++ L+GNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           L  +R +  E    F Q         SA    +V   F  V  EI  I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     ATIGVE    +   +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 131
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +         F +++NL + + SA    N E  FL
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    E      AT+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L     +NI I+L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
           +      +  F +++NL + + SA    N E  FL
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F  +   TI   ++ K + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    ++ LR    +++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A Q  N  F+E+SA    NV   F  ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI   ++ K + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    ++ LR     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A Q  N  F+E+SA    NV   F  ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI   ++ K + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    ++ LR    +++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A Q  N  F+E+SA    NV   F  ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI   ++ K + +D +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    ++ LR     ++ ++L+GNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A Q  N  F+E+SA    NV   F  ++ +I R
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KVV++G   VGK+ L  +F   EFS     T+   + +K +++        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLGSL 135
           Y  +  ++  G  G +LVY +T   SF  +     +L  GH    + ++L+GNK DL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           R V   + ++ A+     FME+SA E    +  F  V+ EI R+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDE 190
           A+   + ++ETSA     VE AF T++ EI R    + L   DE
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI-RQHKLRKLNPPDE 176

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F ++ F  D   TI   + TK   ID +  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G +LV+ +T R SF+ + ++  ++    D++   ++LIGNK DL   R V  E+ Q+ 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
           A++  + +ME SA    NV+ AF     E+ R+I K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF----HELVRVIRK 168

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF  +  + ++++   D + V M L+GNKCDL + R V T+ A E 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           A+   + F+ETSA     VE AF T++ EI +   KK
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ +  + ++++   D +++ ++L+GNKCDL S R V T+ AQ+ 
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + F+ETSA     V+ AF T++ EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V +GD AVGK+ +L  +  N F  D   T+   F    + +D  TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    YRGA   +L + +  + S++++A +W+ ELR H    + I+L+G K DL
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFAR--NEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW--DTA 72
           KV ++G++ VGKS L++ F    ++F  D   T GVE     ++I   TV  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL---RGHADKNIVIMLIGNK 129
           G + Y+   S Y+ G   A+LV+D++  +SF+    W + L   R   ++ +  +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 CDLGSLR-AVPTEDAQEFAQRENLFFMETSA-LEATNVETAFLTVLTEIYR 178
            DL   R  V  + AQ++A    L F + SA     + +  FL++ T  YR
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F      TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F      TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F ++ F  D   TI   + TK  S+D    +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G +LV+ +  RQSF+ + +   + LR     +  ++L+GNK DL S R VP  +A  F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 147 AQRENLFFMETSALEATNVETAF 169
               ++ + E SA    NV+ AF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   +I   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V +GD AVGK+ +L  +  N F  D   T+   F    + +D  TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS- 134
           Y  +    YRGA   +L + +  + S++++  +WL EL+ H    I I+L+G K DL   
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 135 ---LRAVPTEDAQEFAQRENL-------FFMETSALEATNVETAFLTVL 173
              L+  P   +   AQ E L        ++E S+    NV+  F T +
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GN+CDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   +I   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           K+ L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG+E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ E 
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ +  + ++++   D +++ ++L+GNK DL S R V T+ AQ+ 
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + F+ETSA     V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ +  + ++++   D +++ ++L+GNK DL S R V T+ AQ+ 
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + F+ETSA     V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           ++V + G   VGKS L+ RF +  F      T+   ++ + +S D      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD---ELRGHADKNIVIMLIGNKCDL 132
           ++ A+           +LVY +T RQS + +    +   E++G  + +I IML+GNKCD 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173
              R V + +A+  A+     FMETSA    NV+  F  +L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V +GD AVGK+ +L  +  N+F  D   T+   F +  +++D + V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    YRGA   +L + +  + S+++ + +W+ ELR  A  N+ I+L+G K DL
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 125

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ + G + VGKS L+ RF    F  +   T+   ++ +  +ID + V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH---MARWLDELRGHADKNIVIMLIGNKCDLG 133
                  + R   G +LVYD+T R SF+    +   LDE++    KN+ ++L+GNK DL 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLD 145
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTVLTEIYR 178
             R V TE+ ++ A      F E SA     N+   F  +  E+ R
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V +GD AVGK+ LL  +  N F  D   T+   F    + ++  TV   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    YRGA   +L + +  + S+++++ +W+ EL+ H    + I+L+G K DL
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDL 124

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNKCDL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNK DL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KVVL+GD   GK+ LL  FA   F      T+  E     L +  K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  +   +Y  A   +L +D+T   SFD++  RW  E+  H  K + I+++G K DL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 133 ---------GSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAF 169
                      L  V     QE A+    + ++E SA    NV   F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G  +VGKS L  +F   +F   +  TI   F TK ++++ +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
           Y      Y     G +LVY +T  +SF+ +     +L     K  I IML+GNK DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
           R +  E+ +  A+  N  F+E+SA E       F  ++ E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G  +VGKS L  +F   +F      TI   F TK ++++ +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
           Y      Y     G +LVY +T  +SF+ +     +L     K  I IML+GNK DL   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           R +  E+ +  A+  N  F+E+SA E       F  ++ E  +I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G  +VGKS L  +F   +F      TI   F TK ++++ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
           Y      Y     G +LVY +T  +SF+ +     +L     K  I IML+GNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
           R +  E+ +  A+  N  F+E+SA E       F  ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNK DL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +  +N F  +   TI   ++ K + ID +T    I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
             G + V+ +   +SF+ + ++ ++++   D + V M L+GNK DL + R V +  AQ+ 
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+   + ++ETSA     VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+ ++G  +VGKS L  +F   +F      TI   F TK ++++ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
           Y      Y     G +LVY +T  +SF+ +     +L     K  I IML+GNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
           R +  E+ +  A+  N  F+E+SA E       F  ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 11  KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD 70
           K+    K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WD
Sbjct: 3   KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWD 61
Query: 71  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNK 129
           TAGQE Y  +    Y     +++ + +    SF+++ A+W  E+R H   N  I+L+G K
Sbjct: 62  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 120
Query: 130 CD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
            D          L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y     +++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y     +++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y     +++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M NLY    Q I    K V++GD AVGK+ LL  +  N FS +   T+   +    + +D
Sbjct: 4   MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VD 57
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
            K V   +WDTAGQE Y  +    Y      ++ + +    SF+++ A+W  E+R H   
Sbjct: 58  GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 116
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
           N  I+L+G K D          L   +  P    Q  A  + +    ++E SAL    ++
Sbjct: 117 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 176
Query: 167 TAF 169
           T F
Sbjct: 177 TVF 179

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F +  F  D   TI   +   T  ID++     + DTAGQE + A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G ++VY +T + SF+H+ R+    LR    ++  ++L+ NK DL  LR V  +  +E 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
           A + N+ ++ETSA +   NV+  F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F +  F  D   TI   +   T  ID++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G ++VY +T + SF+H+ R+    LR    ++  ++L+ NK DL  LR V  +  +E 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
           A + N+ ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K VL+GD AVGK+ L+  +  N +  +   T    F +  +S+D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL--- 132
           +  +    Y      +L + +    SF +++ +W+ E+R H  K  +I L+G + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLRED 139
Query: 133 ---------GSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAF 169
                       + VP E A+  A+  +   ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M NLY    Q I    K V++GD AVGK+ LL  +  N F  +   T+   +    + +D
Sbjct: 21  MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD 74
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
            K V   +WDTAGQE Y  +    Y      ++ + +    SF+++ A+W  E+R H   
Sbjct: 75  GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
           N  I+L+G K D          L   +  P    Q  A  + +    ++E SAL    ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
           T F
Sbjct: 194 TVF 196

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F +  F  +   TI   ++  T  ID++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G ++VY +T + SF+H+ R+    LR    ++  ++L+ NK DL  LR V  +  +E 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
           A + N+ ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F +  F  +   TI   +   T  ID++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G ++VY +T + SF+H+ R+    LR    ++  ++L+ NK DL  LR V  +  +E 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
           A + N+ ++ETSA +   NV+  F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    S++++ A+W  E+R H     +I L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
                  L   +  P    Q  A   + +++ ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD-- 131
           E Y  +    Y      ++ + +    SF H+ A+W  E+R H   N  I+L+G K D  
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 --------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                   L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P  +E+ ++ A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M NLY    Q I    K V++GD AVGK+ LL  +  N    +   T+   +    + +D
Sbjct: 21  MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VD 74
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
            K V   +WDTAGQE Y  +    Y      ++ + +    SF+++ A+W  E+R H   
Sbjct: 75  GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
           N  I+L+G K D          L   +  P    Q  A  + +    ++E SAL    ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
           T F
Sbjct: 194 TVF 196

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
           E Y  +    Y      ++ + +    SF H+ A+W  E+R H   N  I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
           E Y  +    Y      ++ + +    SF H+ A+W  E+R H   N  I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   +  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
                  LR     P    Q  A  RE  ++ ++E SAL    ++T F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   +  I+L+G K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
                  LR     P    Q  A  RE  ++ ++E SAL    ++T F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    S++++ A+W  E+R H     +I L+G K D   
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 127
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
                  L   +  P    Q  A   + +++ ++E SAL    ++T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   +  I+L+G K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
                  LR     P    Q  A  RE  ++ ++E SAL    ++T F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    S++++ A+W  E+R H     +I L+G K D   
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 128
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
                  L   +  P    Q  A   + +++ ++E SAL    ++T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           M NLY    Q I    K V++GD AVGK+ LL  +  N F  +   T+   +    + +D
Sbjct: 21  MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD 74
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
            K V   +WDTAG E Y  +    Y      ++ + +    SF+++ A+W  E+R H   
Sbjct: 75  GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
           N  I+L+G K D          L   +  P    Q  A  + +    ++E SAL    ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
           T F
Sbjct: 194 TVF 196

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y       Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVPTEDAQ--EFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P + A+  + A R   F +ME SA     V   F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P  +E+ ++ A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL  F+++EF      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL 135
           Y  +    Y      ++ + +    S +++  +W+ E++ H   N+ I+L+ NK DL S 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 136 RAVPTEDAQ 144
             V TE A+
Sbjct: 145 EHVRTELAR 153

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L+ RF +  F      TI   ++ + +S D      QI DT G  ++ A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 88  AVGAMLVYDMTKRQSFDHMA---RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ 144
               +LV+ +T +QS + +    + + +++G  + +I +ML+GNKCD  + R V T +AQ
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 145 EFAQRENLFFMETSALEATNVETAFLTVLT 174
             AQ     FMETSA    NV+  F  +LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K D   
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
                  L   +  P    Q  A  + +    ++E SAL    ++T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+   +    + +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR-------------------QSFDHM-ARWLDELRG 115
            Y  +    Y   VG     D+T R                    SF+++ A+W  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HADKNIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEA 162
           H   N  I+L+G K D          L   +  P    Q  A  + +    ++E SAL  
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 163 TNVETAF 169
             ++T F
Sbjct: 184 RGLKTVF 190

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           D NQ +    K+V++GDS  GK+ LL  FA++ F  +   T+  E  T +  ID + ++ 
Sbjct: 22  DPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIEL 78
Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIML 125
            +WDT+G   Y  V    Y  +   ++ +D+++ ++ D  + +W  E++     N  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 137
Query: 126 IGNKCDL 132
           +G K DL
Sbjct: 138 VGCKSDL 144

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           D NQ +    K+V++GDS  GK+ LL  FA++ F  +   T+  E  T +  ID + ++ 
Sbjct: 17  DPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIEL 73
Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIML 125
            +WDT+G   Y  V    Y  +   ++ +D+++ ++ D  + +W  E++     N  ++L
Sbjct: 74  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 132
Query: 126 IGNKCDL 132
           +G K DL
Sbjct: 133 VGCKSDL 139

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +++VVL+GD  VGK+ L + FA  +   D    +G +   +TL++D +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 75  ERYRAVTS--AYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCD 131
           E+     S  +  +G    ++VY +  R SF+  +    +LR  H   ++ I+L+GNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
           L   R V  E+ +  A   +  F+ETSA    NV   F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GDS  GK+ LL  FA++ F  +   T+  E  T +  ID + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   ++ +D+++ ++ D  + +W  E++     N  ++L+G K DL
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL 123

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P  +E+ ++ A R + F ++E SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
           ++VVLIG+  VGKS L   FA    S+DS   + G +   +TL +D ++   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72  AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
            G+  +       V  AY       ++VY +T R SF+  +    +LR     ++I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +GNK DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
           ++VVLIG+  VGKS L   FA    S+DS   + G +   +TL +D ++   +   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 72  AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
            G+  +       V  AY       ++VY +T R SF+  +    +LR     ++I I+L
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +GNK DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
           Y  +    Y      ++ + +    S +++  +W  E++ H   N+ I+L+GNK D    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
                 L  ++  P   E+ ++ A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 28  KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
           KS L  +F    F      TI  +F  K + +D      +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 88  AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
             G +LVY +  +QSF  +    D+ +R    + + ++L+GNK DL S R V + + +  
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
           A+     FMETSA   T V+  F  ++ ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
           ++VVLIG+  VGKS L   FA    S+DS   + G +   +TL +D ++   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72  AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
            G+  +       V  AY       ++VY +T R SF+  +    +LR     ++I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +GNK DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
           ++VVLIG+  VGKS L   FA    S+DS   + G +   +TL +D ++   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72  AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
            G+  +       V  AY       ++VY +T R SF+  +    +LR     ++I I+L
Sbjct: 67  KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +GNK DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V++GD AVGK+ LL  F++ E       T+   F +  +   ++     +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y  +   +L + +  R SFD+++ +W  E++ + D    + L+G K DL
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDL 139

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V++GD AVGK+ LL  F++ E       T+   F +  +   ++     +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y  +   +L + +  R SFD+++ +W  E++ + D    + L+G K DL
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDL 138

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 3   NLY--GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           NLY  G   Q +    K+VL+GD   GK+ +L   A++ +      T+  E  T  L  +
Sbjct: 13  NLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETE 71
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADK 119
            + V+  +WDT+G   Y  V    Y  +   +L +D+++ ++ D  + +W  E+  +   
Sbjct: 72  EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS 131
Query: 120 NIVIMLIGNKCDL 132
             V +LIG K DL
Sbjct: 132 TRV-LLIGCKTDL 143

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K V++GD AVGK+ LL  +A + F  +   T+  +    ++++  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD-- 131
           E Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LIG + D  
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 --------LGSLRAVP--TEDAQEFAQREN-LFFMETSALEATNVETAF 169
                   L  ++  P   E  Q+ A+      ++E SAL    ++T F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G   Q +    K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+
Sbjct: 1   GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVE 59
Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIM 124
             +WDT+G   Y  V    Y  +   +L +D+++ ++ D  + +W  E+  +     V +
Sbjct: 60  LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-L 118
Query: 125 LIGNKCDL 132
           LIG K DL
Sbjct: 119 LIGCKTDL 126

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 3   NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK 62
           NLY  +  + D +FKV+L+G+S VGKS L   F   +     +     +   + + +D +
Sbjct: 13  NLY--FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE 70
Query: 63  TVKA---QIW---DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-G 115
            V      IW   D  G  R   + +         ++V+ +T R+SF  +   L  LR G
Sbjct: 71  EVTLVVYDIWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAG 125
Query: 116 HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
               ++ ++L+GNK DL   R V  E+ +  A   +   +ETSA    N    F   + +
Sbjct: 126 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 185
Query: 176 I 176
           I
Sbjct: 186 I 186

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+GD   GK+ +L   A++ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  V    Y  +   +L +D+++ ++ D  + +W  E+  +     V +LIG K DL
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 127

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 377
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 68
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
             A+   + QE       R+  ++++ S   + +     LT LT  Y+
Sbjct: 129 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 55
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
             A+   + QE       R+  ++++ S   + +     LT LT  Y+
Sbjct: 116 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 67
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
             A+   + QE       R+  ++++ S   + +     LT LT  Y+
Sbjct: 128 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 129

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 120

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 55
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 135 LRAVPTEDAQE 145
             A+   + QE
Sbjct: 116 --AMKPHEIQE 124

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 22/138 (15%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            SNL+G+   +I      +++G    GK+ +L +    E  + +  TIG   +T    + 
Sbjct: 9   FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQ 57
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELR 114
           +K +   +WD  GQ+R R++   YYR   G + V D   R    ++ + M R L  DELR
Sbjct: 58  YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR 117
Query: 115 GHADKNIVIMLIGNKCDL 132
                N V ++  NK DL
Sbjct: 118 -----NAVWLVFANKQDL 130

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GD A GK+ LL   ++ +F      T+  E     + +D + V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y  +   ++ + +    S +++  +W+ E+  H  + + I+L+G K DL
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDL 126

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL------DELRGHADKNIVIMLIGNK 129
           R R +   Y++   G + V D   R+    +A  L      DELR     + V++L  NK
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFANK 127
Query: 130 CDLGSLRAV 138
            DL +  A+
Sbjct: 128 QDLPNAMAI 136

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++ +G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDK 56
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
            R +   YY G  G + V D   R   D   + L   +     ++ +I++  NK DL   
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 136 RAVPTEDAQEFAQ---RENLFFMETSALEATNVETAFLTVLTEIYR 178
              P E  ++      R+  ++++ S   + +     LT LT  Y+
Sbjct: 117 XK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           V+KV+L+G   VGKS L   F   E   +++A  G  +  +++ +D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
           +  R +           ++VY +T + SF+  +    +LR      ++ I+L+GNK DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             R V  ++ +  A   +  F+ETSA    NV+  F  V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           V+KV+L+G   VGKS L   F   E   +++A  G  +  +++ +D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
           +  R +           ++VY +T + SF+  +    +LR      ++ I+L+GNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             R V  ++ +  A   +  F+ETSA    NV+  F  V+ +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           V+KV+L+G   VGKS L   F   E   +++A  G  +  +++ +D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
           +  R +           ++VY +T + SF+  +    +LR      ++ I+L+GNK DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             R V  ++ +  A   +  F+ETSA    NV+  F  V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            SNL+G+   +I      +++G    GK+ +L +    E  + +  TIG   +T    + 
Sbjct: 9   FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQ 57
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELR 114
           +K +   +WD  GQ+R R++   YYR   G + V D   R    ++ + M R L  DELR
Sbjct: 58  YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR 117
Query: 115 GHADKNIVIMLIGNKCDL 132
                N   ++  NK DL
Sbjct: 118 -----NAAWLVFANKQDL 130

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +    +   +   T+ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA---QIW 69
           D VFKV+L+G+S VGKS L   F   +     +     +   + + +D + V      IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 70  ---DTAG--QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVI 123
              D  G  Q+       A+       ++V+ +T R+SF  +   L  LR G    ++ +
Sbjct: 70  EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 122
Query: 124 MLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +L+GNK DL   R V  E+ +  A   +   +ETSA    N    F   + +I
Sbjct: 123 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+   +   T+   +   T+ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 68
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
             A+   + QE       R+  ++++ S   + +     LT LT  Y+
Sbjct: 129 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 57
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 135 LRAVPTEDAQE 145
             A+   + QE
Sbjct: 118 --AMKPHEIQE 126

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
           Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+   +   T+ I  +     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
            Y  +    Y      ++ + +    SF+++  +W+ E+  H  K    +L+G + DL
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    + SV +  T+G   +T T    +K VK  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 58
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 135 LRAVPTEDAQE 145
             A+   + QE
Sbjct: 119 --AMKPHEIQE 127

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT--- 71
           VFKV+L+G+S VGKS L   F   +     +     +   + + +D + V   ++D    
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 72  --AG---QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
             AG   Q+       A+       ++V+ +T R+SF  +   L  LR G    ++ ++L
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +GNK DL   R V  E+ +  A   +   +ETSA    N    F   + +I
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           +S L+    QK D   +++++G  A GK+ +L +    E  V +  TIG   +T    ++
Sbjct: 5   VSRLFNRLFQKKD--VRILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VE 57
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-K 119
            + +   +WD  GQ++ R +   YY    G + V D   R+  D     L  +    + K
Sbjct: 58  FRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELK 117
Query: 120 NIVIMLIGNKCDLGSLRAVP--TEDAQEFAQRENLFFMETSA 159
           + +I++  NK DL +  +    TE       RE  +F++++ 
Sbjct: 118 DAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTC 159

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ++
Sbjct: 22  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 76
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNKC 130
            R +   Y++   G + V D   R    ++ D + R L  DELR     + V+++  NK 
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANKQ 131
Query: 131 DL 132
           DL
Sbjct: 132 DL 133

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ L+G    GK+  +   A  +FS D   T+G  F  + ++  + T+K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
           R+R++   Y RG    + + D   R+  +      +EL    DK     I ++++GNK D
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASR---NELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 L 132
           L
Sbjct: 136 L 136

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L +    E  + +  TIG   +T    + +K +   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
           R R++   YYR   G + V D   R    ++ + M R L  DELR     N   ++  NK
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANK 110
Query: 130 CDL 132
            DL
Sbjct: 111 QDL 113

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
           + R +   Y++   G + V D   R    +S D + + L  DELR     + V+++  NK
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR-----DAVLLVFANK 139
Query: 130 CDLGSLRAVPTED 142
            D+ +  A+P  +
Sbjct: 140 QDMPN--AMPVSE 150

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
           + R +   Y++   G + V D   R+      + + R L  DELR     + V+++  NK
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 110
Query: 130 CDL 132
            DL
Sbjct: 111 QDL 113

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ L+G    GK+  +   A  +F+ D   T+G  F  + ++  + T+K  +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
           R+R++   Y RG    + + D   ++  +      +EL    DK     I ++++GNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 L-GSLRAVPTEDAQEFAQRENL 152
           L G+L      D +E  ++ NL
Sbjct: 136 LPGAL------DEKELIEKMNL 151

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNKC 130
            R +   Y++   G + V D   R+      + + R L  DELR     + V+++  NK 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQ 128
Query: 131 DL 132
           DL
Sbjct: 129 DL 130

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ++
Sbjct: 18  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNKC 130
            R +   Y++   G + V D   R+      + + R L  DELR     + V+++  NK 
Sbjct: 73  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQ 127
Query: 131 DL 132
           DL
Sbjct: 128 DL 129

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ L+G    GK+  +   A  +F+ D   T+G  F  + ++  + T+K  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
           R+R++   Y RG    + + D   ++  +      +EL    DK     I ++++GNK D
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 132 L-GSLRAVPTEDAQEFAQRENL 152
           L G+L      D +E  ++ NL
Sbjct: 145 LPGAL------DEKELIEKMNL 160

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
           + R +   Y++   G + V D   R+      + + R L  DELR     + V+++  NK
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 275
Query: 130 CDL 132
            DL
Sbjct: 276 QDL 278

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
           + R +   YY+     + V D   R    ++ + + + L  DE+R     N ++++  NK
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMR-----NAILLVFANK 127
Query: 130 CDL 132
            DL
Sbjct: 128 HDL 130

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           + ++G    GKS L  +F    F  +    +   + ++  ++DH+ V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 78  RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGS 134
           R     Y   A   ++VY +  RQSFD  + +L+ L  HA    ++I  +L+GNK D+  
Sbjct: 83  RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 135 LRAVPTEDAQEFAQRENLFFMETSA-LEATNVETAFLTVLTEIYR 178
            R V   +    A R    F E SA L+  +V+  F   + E  R
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG   +T    +++K +   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
           + R +   Y++   G + V D   R+      + + R L  DELR     + V+++  NK
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 112
Query: 130 CDL 132
            DL
Sbjct: 113 QDL 115

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +++++G    GK+ +L +F  N   VD+   T+G  F  KTL  +H+  K  IWD  GQ
Sbjct: 19  LRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQ 72
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
           +  R+    Y+    G + V D   RQ      R L  L          +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 133 GSLRAVPTEDAQEF 146
           G+L     ++A E 
Sbjct: 133 GALSCNAIQEALEL 146

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +++++G    GK+ +L +F  N   VD+   T+G  F  KTL  +H+  K  IWD  GQ
Sbjct: 19  LRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQ 72
Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
           +  R+    Y+    G + V D   RQ      R L  L          +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 133 GSLRAVPTEDAQEF 146
           G+L     ++A E 
Sbjct: 133 GALSXNAIQEALEL 146

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E  V +K TIG  F  +TLS  +K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLS--YKNLKLNVWDLGGQT 73
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR 100
             R     YY      + V D T +
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK 98

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G    GK+ +L +F  NE  V +  TIG   +     I  K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
            R+  + YY      +LV D   R+        L  +  H D +   +++  NK D+
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G    GK+ +L +F+ NE  V +  TIG   +   ++      +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
            R+  + YY      ++V D T R+        L ++  H D +   +++  NK D+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G    GK+ +L +F+ NE  V +  TIG   +   ++      +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 78
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
            R+  + YY      ++V D T R+        L ++  H D +   +++  NK D+
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G    GK+ +L +F+ NE  V +  TIG   +   ++      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135
            R+  + YY      ++V D T R+        L ++  H D +   +++  NK D+   
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 136 RAVP 139
             V 
Sbjct: 133 MTVA 136

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           KV+++G    GK+ +L +F+ NE  V +  TIG   +   ++      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135
            R+  + YY      ++V D T R+        L ++  H D +   +++  NK D+   
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 136 RAVP 139
             V 
Sbjct: 133 MTVA 136

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L +F   +    S  T+G  F  KTL  +H+  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQK 71
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL 113
             R+    Y+    G + V D   RQ      R L  L
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVK---AQIWDT 71
           K+ ++G++  GK+ LL +  + + S      AT+G++ +   + I  K  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKC 130
           AG+E + +    +       + VYD++K Q+  D    WL  ++  A  + VI L+G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 131 DL 132
           D+
Sbjct: 123 DV 124

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           + +++++G    GK+ +L +F  N   VD+   T+G  F  KTL  +H+  K  IWD  G
Sbjct: 1   MLRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGG 54
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
            +  R+    Y+    G + V D   RQ      R L  L          +++  NK DL
Sbjct: 55  LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
Query: 133 -GSLRAVPTEDAQEF 146
            G+L     ++A E 
Sbjct: 115 PGALSCNAIQEALEL 129

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 17  KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVK---AQIWDT 71
           K+ ++G++  GK+ LL +  + + S      AT+G++ +   + I  K  +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKC 130
           AG+E + +    +       + VYD++K Q+  D    WL  ++  A  + VI L+G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 131 DL 132
           D+
Sbjct: 121 DV 122

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            SNL+G+   +I      +++G    GK+ +L +    E  + +  TIG   +     + 
Sbjct: 9   FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVE----CVQ 57
Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWLDE 112
           +  +   +WD  GQ+R R++   YY    G + V D   R    ++ + M R L+E
Sbjct: 58  YCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 27  GKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY 85
           GK+ +L +F  N   VD+   T+G  F  KTL  +H+  K  IWD  GQ+  R+    Y+
Sbjct: 30  GKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 86  RGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-GSLRAVPTEDA 143
               G + V D   RQ      R L  L          +++  NK DL G+L     ++A
Sbjct: 84  ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEA 143
Query: 144 QEF 146
            E 
Sbjct: 144 LEL 146

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E  V +  TIG   +T T    +K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGQT 57
Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKR 100
             R     YY      + V D   R
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR 82

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D   +++L+G    GK+ LL + A  + S     T    F  K  S+  +  K  +WD  
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIG 69
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCD 131
           GQ + R    +Y+      + V D   R+ F+   + L EL      + V +LI  NK D
Sbjct: 70  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 132 LGSLRAVPTEDAQEFAQRENL 152
           L  L A P   A E A+  NL
Sbjct: 130 L--LTAAP---ASEIAEGLNL 145

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 18  VVLIGDSAVGKSQLLARF-ARNEFSVDSKATIGV---EFQTKTLSIDHKTVKAQIWDTAG 73
           V+ +G    GK+ ++ +    N  S +   TIG    +F++ +LS         ++D +G
Sbjct: 24  VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSF-------TVFDMSG 76
Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKC 130
           Q RYR +   YY+     + V D + R         LD L  H D   + I I+   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136
Query: 131 DL 132
           DL
Sbjct: 137 DL 138

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D   +++L+G    GK+ LL + A  + S     T    F  K  S+  +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIG 68
Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCD 131
           GQ + R    +Y+      + V D   R+ F+   + L EL      + V +LI  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 132 LGSLRAVPTEDAQEFAQRENL 152
           L  L A P   A E A+  NL
Sbjct: 129 L--LTAAP---ASEIAEGLNL 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-120
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-117
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-116
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-116
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-115
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-114
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-114
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-113
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-113
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-113
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-112
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-112
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-112
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-112
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-111
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-110
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-110
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-109
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-109
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-109
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-109
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-109
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-109
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-109
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-107
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-107
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-107
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-107
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-106
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-106
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-106
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-106
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-105
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-105
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-103
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-103
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-102
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-81
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-80
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	9e-80
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-76
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-76
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-75
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	8e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-73
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-70
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-69
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-67
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-65
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-59
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-58
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-41
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-40
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	8e-40
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-39
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-38
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-37
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-36
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-35
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-33
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	6e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	8e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  340 bits (875), Expect = e-120
 Identities = 116/225 (51%), Positives = 154/225 (68%), Gaps = 6/225 (2%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MS+   DY    D +FK+VLIGDS VGKS LL+RF +NEF++DSK+TIGVEF T+TL I+
Sbjct: 1   MSS--EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE 58

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYD++K  S+++   WL ELR +AD N
Sbjct: 59  GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           + + LIGNK DL  LRAVPTE+++ FAQ   L F ETSAL + NV+ AF  ++  IY+ +
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178

Query: 181 SKKSLTANDE--HDVAGNSNLLKGTRIIV--PGQDQNSASKRGCC 221
           SK  +   D   +  A  ++   G  I +     +   A+   CC
Sbjct: 179 SKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  331 bits (850), Expect = e-117
 Identities = 120/192 (62%), Positives = 157/192 (81%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYR +TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
             LRAVPT++A+ FA++ NL F+ETSAL++TNVE AF  +LTEIYRI+S+K +     HD
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

Query: 193 VAGNSNLLKGTR 204
            +  +N++  + 
Sbjct: 183 ESPGNNVVDISV 194

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  329 bits (845), Expect = e-116
 Identities = 86/184 (46%), Positives = 118/184 (64%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  ++  D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60

Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
            QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120

Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
            GNK DL + R V   +A  FAQ   L F+ETSAL   NVE AF+    +I   I    L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

Query: 186 TAND 189
               
Sbjct: 181 DPER 184

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  329 bits (845), Expect = e-116
 Identities = 94/213 (44%), Positives = 142/213 (66%), Gaps = 9/213 (4%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIG+S VGKS LL RF+ + ++ D  +TIGV+F+ KT+ +D KTVK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ +  WL E+  +A   ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           KCDL   R V  + A+EFA    + F+ETSAL++TNVE AFLT+  +I   +S+++L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181

Query: 189 DEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
            +          K  +  V  + Q+  +  GCC
Sbjct: 182 TQK---------KEDKGNVNLKGQSLTNTGGCC 205

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  326 bits (838), Expect = e-115
 Identities = 109/182 (59%), Positives = 139/182 (76%)

Query: 2   SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH 61
           S L    ++  ++VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ +  
Sbjct: 12  SGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT 71

Query: 62  KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121
             VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  + RWL EL  HA+  I
Sbjct: 72  AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI 131

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
           V+ML+GNK DL   R VPTE+A+ FA+   L F+ETSAL++TNVE AF TVL EI+  +S
Sbjct: 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

Query: 182 KK 183
           K+
Sbjct: 192 KQ 193

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  324 bits (832), Expect = e-114
 Identities = 114/176 (64%), Positives = 145/176 (82%)

Query: 2   SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH 61
               G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D 
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75

Query: 62  KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121
           KT+KAQIWDTAG ERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NI
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           VIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  323 bits (830), Expect = e-114
 Identities = 87/177 (49%), Positives = 114/177 (64%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK ++IG +  GKS LL +F  N+F  DS  TIGVEF ++ +++  KTVK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R+VT +YYRGA GA+LVYD+T R++++ +A WL + R  A  NIV++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAND 189
              R V   +A  FAQ   L F+ETSAL   NVE AFL     I   I    L    
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPER 199

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  320 bits (823), Expect = e-113
 Identities = 75/172 (43%), Positives = 110/172 (63%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               K+VL+GD   GKS L+ RF +++F    ++TIG  F ++TL+++  TVK +IWDTA
Sbjct: 10  SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERY ++   YYRGA  A++V+D+T + SF+   +W+ EL+   + N+V+ L GNK DL
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
              R V  EDAQ +AQ   LFFMETSA  ATNV+  F  +   + R+   ++
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  320 bits (823), Expect = e-113
 Identities = 86/182 (47%), Positives = 129/182 (70%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           KCDL + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI + +   +    
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

Query: 189 DE 190
            E
Sbjct: 190 AE 191

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  320 bits (822), Expect = e-113
 Identities = 70/206 (33%), Positives = 122/206 (59%), Gaps = 5/206 (2%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           +   DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAG ERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
           KCD+   R V +E  ++ A      F E SA +  NV+  F  ++  I   +S+   TA+
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 189 DEHDVAGNSNLLKGTRIIVPGQDQNS 214
                   +   +G ++       + 
Sbjct: 182 P-----AVTGAKQGPQLTDQQAPPHQ 202

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  319 bits (820), Expect = e-112
 Identities = 89/177 (50%), Positives = 119/177 (67%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
             +  Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QI
Sbjct: 15  VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H+  N+VIMLIGN
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
           K DL S R V  E+ + FA+   L FMETSA  A NVE AF+    EIYR I +   
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  319 bits (819), Expect = e-112
 Identities = 74/176 (42%), Positives = 115/176 (65%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTAN 188
              R V  + A+EF++ ++++++ETSA E+ NVE  FL +   +     + +L  N
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNN 199

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  318 bits (817), Expect = e-112
 Identities = 84/178 (47%), Positives = 118/178 (66%), Gaps = 2/178 (1%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           + +    YN    Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF T+ + + 
Sbjct: 3   LGSATAPYNY--SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS 60

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            + +K QIWDTAGQER+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R   + N
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            VI+LIGNK DL + R V  E+A++FA+   L F+E SA    NVE AFL    +IY+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  319 bits (819), Expect = e-112
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 14/222 (6%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MS   GD+       FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++
Sbjct: 4   MST-GGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 61

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            +TV+ Q+WDTAG ER+R++  +Y R +  A++VYD+T   SF    +W+D++R     +
Sbjct: 62  DRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD 121

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           ++IML+GNK DL   R V  E+ +  A+  N+ F+ETSA    NV+  F  V   +  + 
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222
           S +  +  D  D            I +    +   S+ GC L
Sbjct: 182 STQDRSREDMID------------IKLEKPQEQPVSEGGCLL 211

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  316 bits (812), Expect = e-111
 Identities = 79/179 (44%), Positives = 117/179 (65%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
            +  DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
           KCD+   R V  E  ++ A    + FMETSA    NVE AF T+  +I   + K     
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  314 bits (806), Expect = e-110
 Identities = 72/181 (39%), Positives = 114/181 (62%)

Query: 2   SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH 61
            +  G   +  DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ KT+    
Sbjct: 9   HHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD 68

Query: 62  KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121
           K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+  ++SF  +  W  +++ ++  N 
Sbjct: 69  KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
            ++L+GNKCDL   R VP ED +  A      F E SA E  NV+  F  ++  I   ++
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

Query: 182 K 182
           +
Sbjct: 189 E 189

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  313 bits (804), Expect = e-110
 Identities = 87/184 (47%), Positives = 122/184 (66%), Gaps = 1/184 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           +    GD +++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I 
Sbjct: 15  VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ 74

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            K VK QIWDTAGQER+R +T +YYR A GA+L YD+TKR SF  +  W++++R +A  N
Sbjct: 75  GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFLTVLTEIYRI 179
           IV +LIGNK DL  LR V   +AQ  A+  + L  +ETSA +++NVE AFL V TE+   
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

Query: 180 ISKK 183
               
Sbjct: 195 HGGP 198

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  310 bits (797), Expect = e-109
 Identities = 66/172 (38%), Positives = 94/172 (54%), Gaps = 4/172 (2%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G       Y FKVVL+G+  VGK+ L+ R+  N+F+     T+G  F TK L+I  K V 
Sbjct: 1   GSR----AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN 56

Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
             IWDTAGQER+ A+   YYR + GA+LVYD+T   SF  +  W+ ELR      I + +
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 116

Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
           +GNK DL   R V  ++A+ +A+        TSA +   +E  FL +   + 
Sbjct: 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  311 bits (799), Expect = e-109
 Identities = 85/178 (47%), Positives = 126/178 (70%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
                   N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D
Sbjct: 19  QGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 78

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N
Sbjct: 79  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 138

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           +  +L+GNKCDL + + V    A+EFA    + F+ETSA  ATNVE +F+T+  EI +
Sbjct: 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  310 bits (796), Expect = e-109
 Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 1/179 (0%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTV 64
           G      D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K L +D   V
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
           K Q+WDTAGQER+R+VT AYYR A   +L+YD+T + SFD++  WL E+  +A  ++ +M
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           L+GNK D    R V  ED ++ A+   L FMETSA    NV+ AF  +  E+ R   K 
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  310 bits (797), Expect = e-109
 Identities = 70/172 (40%), Positives = 107/172 (62%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               KV L+GD+ VGKS ++ RF ++ F  +   TIG  F TKT+   ++  K  IWDTA
Sbjct: 21  IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+ ++   YYRG+  A++VYD+TK+ SF  + +W+ EL+ H  +NIV+ + GNKCDL
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
             +R VP +DA+E+A+      +ETSA  A N+E  F  +  +I  +   ++
Sbjct: 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  310 bits (797), Expect = e-109
 Identities = 75/204 (36%), Positives = 116/204 (56%), Gaps = 2/204 (0%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
             +      +  D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+
Sbjct: 6   TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            K VK Q+WDTAGQER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+  
Sbjct: 66  GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
             ++L+GNK D+   R V  +  +  A+   + F+E+SA    NV   F T+   I   I
Sbjct: 126 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

Query: 181 SKKSLTANDEHDVAGNSNLLKGTR 204
               L         GN ++  G+ 
Sbjct: 185 DSNKLVGVGNGK-EGNISINSGSG 207

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  309 bits (794), Expect = e-109
 Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
            +  D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           K D    + V TEDA +FA +  +   ETSA E  NVE  F  +   + R     
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 68/163 (41%), Positives = 99/163 (60%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV L+GD+ VGKS ++ RF  + F  +   TIG  F TKT+   ++  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+RA+   YYRG+  A++VYD+TK ++F  +  W+ ELR H   +IV+ + GNKCDL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           R V   DA+++A   +  F+ETSA  A N+   F+ +   I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 77/165 (46%), Positives = 108/165 (65%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
             FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           + RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  308 bits (792), Expect = e-108
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TV 64
           G +        K+V++GD A GK+ L   FA+  F    K TIG++F  + +++     V
Sbjct: 1   GSH----MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNV 56

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR---GHADKNI 121
             QIWD  GQ     +   Y  GA G +LVYD+T  QSF+++  W   ++     ++   
Sbjct: 57  TLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP 116

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
           ++ L+GNK DL  +R +  E    F Q         SA    +V   F  V  EI  I  
Sbjct: 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

Query: 182 KK 183
            K
Sbjct: 177 NK 178

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  309 bits (793), Expect = e-108
 Identities = 73/174 (41%), Positives = 114/174 (65%)

Query: 8   YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQ 67
           +    DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK Q
Sbjct: 16  FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75

Query: 68  IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIG 127
           IWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+G
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

Query: 128 NKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
           NKCD+   R VPTE  Q  A++    F E SA E  +V  AF  ++  I   +S
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  306 bits (786), Expect = e-107
 Identities = 69/179 (38%), Positives = 113/179 (63%), Gaps = 3/179 (1%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           MS+  GD+       FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++
Sbjct: 3   MSS--GDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 59

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            +TV+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   SF   ++W+D++R     +
Sbjct: 60  DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           ++IML+GNK DL   R V TE+ +  A+  N+ F+ETSA    NV+  F  V   +  +
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  305 bits (784), Expect = e-107
 Identities = 65/171 (38%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
            +  D+  +V++IG   VGK+ L+ RF  + F    K+T+GV+F+ KT+ +  K ++ QI
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+ ++TSAYYR A G +LVYD+TK+++FD + +W+  +  +A ++  ++L+GN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139

Query: 129 KCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
           K D  + R +  +  ++FAQ+   + F E SA +  NV+  FL ++ +I +
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  304 bits (780), Expect = e-107
 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 1/170 (0%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
              R V  +  +  A+   + F+E+SA    NV   F T+   I   I  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  304 bits (782), Expect = e-107
 Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 2   SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH 61
           S+     ++ +    K+++IG+S VGKS LL RF  + F  +  ATIGV+F+ KT+S+D 
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61

Query: 62  KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN- 120
              K  IWDTAGQER+R +T +YYRGA G +LVYD+T+R +F  +  WL+EL  +  +N 
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
           IV ML+GNK D    R V   +  +FA++ ++ F+E SA     V+ AF  ++ +I +  
Sbjct: 122 IVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 181 SKKSLTAND 189
                   +
Sbjct: 181 GLWESENQN 189

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  305 bits (782), Expect = e-106
 Identities = 69/194 (35%), Positives = 113/194 (58%), Gaps = 11/194 (5%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------- 62
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +  + +          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82

Query: 63  TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNI 121
            V  Q+WDTAGQER+R++T+A++R A+G +L++D+T +QSF ++  W+ +L+ +A  +N 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
            I+LIGNK DL   R V    A+E A +  + + ETSA    NVE A  T+L  I + + 
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202

Query: 182 KKSLTANDEHDVAG 195
           +          V G
Sbjct: 203 QCVEKTQIPDTVNG 216

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  303 bits (777), Expect = e-106
 Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 6/172 (3%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
              +K+VL GD+AVGKS  L R  +NEF  +  AT+GV+FQ KTL +D +    Q+WDTA
Sbjct: 26  QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTA 85

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R++  +Y+R A G +L+YD+T  +SF ++  W+D +   A + + IML+GNK D+
Sbjct: 86  GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145

Query: 133 GSL------RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
                    + VP    ++ A      F ETSA + +N+  A L +  E+ +
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  302 bits (776), Expect = e-106
 Identities = 63/186 (33%), Positives = 110/186 (59%), Gaps = 11/186 (5%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH------- 61
           +   DY+ K + +GDS VGK+ +L ++   +F+     T+G++F+ K +           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64

Query: 62  ---KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD 118
              + +  Q+WDTAG ER+R++T+A++R A+G +L++D+T  QSF ++  W+ +L+ HA 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124

Query: 119 -KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
            +N  I+L GNK DL   RAV  E+A+E A++  + + ETSA   TN+  A   +L  I 
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

Query: 178 RIISKK 183
           + + + 
Sbjct: 185 KRMERS 190

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  301 bits (773), Expect = e-106
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           +   K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  + + ++ + V+  +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQE + A+T AYYRGA   +LV+  T R+SF+ ++ W +++      +I   L+ NK DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
                +  E+A+  A+R  L F  TS  E  NV   F  +  +  +
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  302 bits (775), Expect = e-105
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFAR--NEFSVDSKATIGVEFQTKTLS 58
           +       +       KV ++G++ VGKS L++ F    ++F  D   T GVE     ++
Sbjct: 6   VKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVT 65

Query: 59  IDHKTVKAQIW--DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-- 114
           I   TV  +++  DTAG + Y+   S Y+ G   A+LV+D++  +SF+    W + L+  
Sbjct: 66  IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125

Query: 115 -GHADKNIVIMLIGNKCDLGSLR-AVPTEDAQEFAQRENLFFMETSA-LEATNVETAFLT 171
               ++ +  +L+ NK DL   R  V  + AQ++A    L F + SA     + +  FL+
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185

Query: 172 VLTEIYRIISKKSLTANDE 190
           + T  YR    K     D 
Sbjct: 186 IATTFYRNYEDKVAAFQDA 204

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  301 bits (774), Expect = e-105
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 17/217 (7%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
             +   + KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QI
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIM 124
           WDTAGQER++++  A+YRGA   +LV+D+T   +F  +  W DE    A     +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           ++GNK DL + +            + N+ + ETSA EA NVE AF T+     +  ++  
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

Query: 185 LTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
           L                    I   +++ + +    C
Sbjct: 182 LYNEF-------------PEPIKLDKNERAKASAESC 205

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  296 bits (759), Expect = e-103
 Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             +FK+++IGDS VGK+ L  RF    F   ++ATIGV+F+ + + ID + +K Q+WDTA
Sbjct: 18  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77

Query: 73  GQERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKC 130
           GQER+R ++   YYR     + VYDMT   SF  +  W++E + H   N I  +L+GNKC
Sbjct: 78  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 137

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSAL---EATNVETAFLTVLTEIYR 178
           DL S   VPT+ AQ+FA   ++   ETSA    +  +VE  F+T+  ++  
Sbjct: 138 DLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  294 bits (754), Expect = e-103
 Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 6/171 (3%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             +FKV+L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGN 128
           GQER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD    ++   +++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 129 KCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLTEIYR 178
           K D+   R V TE+AQ + +   +  + ETSA +ATNV  AF   +  +  
Sbjct: 125 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  294 bits (756), Expect = e-102
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 10  QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVE-FQTKTLSIDHKTVKAQI 68
           ++ +  +K+ LIGD  VGK+  + R     F  +  AT+G        L      +K  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQE+   +   YY GA GA+L +D+T R +  ++ARW+ E +        I++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           K D+ + + +  +   E  + +N  + E SA  A N    FL +           
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  283 bits (727), Expect = 1e-98
 Identities = 66/177 (37%), Positives = 106/177 (59%), Gaps = 7/177 (3%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQ 67
           + +   + KV+++GDS VGK+ L+ R+  +++S   KATIG +F TK +++D  K    Q
Sbjct: 2   SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61

Query: 68  IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVI 123
           +WDTAGQER++++  A+YRGA   +LVYD+T   SF+++  W DE   HA+    +    
Sbjct: 62  VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121

Query: 124 MLIGNKCDL-GSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLTEIYR 178
           +++GNK D   S + V  + AQE A+   ++    TSA  A NV+TAF  +     +
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  276 bits (709), Expect = 2e-95
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
             +    FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +
Sbjct: 9   QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 68

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQE++  +   YY  A  A++++D+T R ++ ++  W  +L    + NI I+L GN
Sbjct: 69  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGN 127

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
           K D+   +      +  F +++NL + + SA    N E  FL +  ++    + + +  
Sbjct: 128 KVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  267 bits (685), Expect = 6e-92
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 40/205 (19%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA------ 66
              +K VL+G+S+VGKS ++ R  ++ F  ++  TIG  F T  ++++   +K       
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 67  -------------------------------QIWDTAGQERYRAVTSAYYRGAVGAMLVY 95
                                           IWDTAGQERY ++   YYRGA  A++V+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 96  DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFM 155
           D++   + D    W+++L+     N +I+L+ NK D      V   + Q++AQ  NL F+
Sbjct: 125 DISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFI 181

Query: 156 ETSALEATNVETAFLTVLTEIYRII 180
           +TSA   TN++  F  +  EIY+ I
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  252 bits (646), Expect = 3e-86
 Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 2/184 (1%)

Query: 2   SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH 61
                 +  + D +FKV+L+G+S VGKS L   F   +     +     +   + + +D 
Sbjct: 10  GRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK 69

Query: 62  KTVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADK 119
           + V   ++D   Q            +     ++V+ +T R+SF  +   L  L  G    
Sbjct: 70  EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129

Query: 120 NIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
           ++ ++L+GNK DL   R V  E+ +  A   +   +ETSA    N    F   + +I   
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

Query: 180 ISKK 183
             + 
Sbjct: 190 RGRN 193

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  249 bits (637), Expect = 3e-85
 Identities = 72/166 (43%), Positives = 104/166 (62%), Gaps = 3/166 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+VL+G++AVGKS ++ RF  N+F+ + + TIG  F T+ ++I+  TVK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD---L 132
           R+ ++   YYR A  A++VYD+TK QSF     W+ EL   A K+I+I L+GNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           G  R V  E+ ++ A+ + L F ETSA    NV   FL +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  247 bits (632), Expect = 2e-84
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           VFKV+L+G+S VGKS L   F   +     +     +   + + +D + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 75  ERYRAV-TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADKNIVIMLIGNKCDL 132
                       +     ++V+ +T R+SF  +   L  L  G    ++ ++L+GNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
              R V  E+ +  A   +   +ETSA    N    F   + +I  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  241 bits (617), Expect = 6e-82
 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 2/180 (1%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
           G  +Q    + KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+
Sbjct: 9   GGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQ 67

Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIM 124
             I DTAGQE Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +
Sbjct: 68  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           L+GNK DL   R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI     + S
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  239 bits (612), Expect = 7e-81
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 18/215 (8%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
            Q    + KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I
Sbjct: 8   GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 66

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIG 127
            DTAGQE Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+G
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 128 NKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
           NK DL   R V  E+A+  A++ N+ ++ETSA    NV+  F  ++ EI     + S   
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK 186

Query: 188 NDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222
           N +                   +      +  CC+
Sbjct: 187 NGKK----------------KRKSLAKRIRERCCI 205

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  236 bits (606), Expect = 2e-80
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 2/165 (1%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + KV+++G   VGKS L  +F  +EF  D + T    ++ K + +D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLG 133
           E Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
             R V  E+A+  A + N+ ++ETSA    NV+  F  ++ EI  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  235 bits (602), Expect = 9e-80
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +++VVL+GD  VGK+ L + FA  +   D    +G +   +TL++D +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 75  ERYRAVTS--AYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADKNIVIMLIGNKCD 131
           E+     S  +  +G    ++VY +  R SF+  +    +L R H   ++ I+L+GNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           L   R V  E+ +  A   +  F+ETSA    NV   F  V+ ++  
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  228 bits (584), Expect = 1e-76
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA-TIGVEFQTKTLSIDHKT---V 64
           ++  +  ++VVLIG+  VGKS L   FA    S+DS    +G +   +TL +D ++   +
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADKNIVI 123
              +W+  G+  +  +     +     ++VY +T R SF+  +    +L R    ++I I
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 124 MLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           +L+GNK DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++      K
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  227 bits (582), Expect = 2e-76
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 6   GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
                 +    KVV++G   VGK+ L  +F   EFS     T+   + +K +++      
Sbjct: 15  YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFH 73

Query: 66  AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIM 124
             + DTAGQ+ Y  +  ++  G  G +LVY +T   SF  +     +   GH    + ++
Sbjct: 74  LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           L+GNK DL   R V   + ++ A+     FME+SA E    +  F  V+ EI R+ +   
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  223 bits (572), Expect = 4e-75
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               K+V++G   VGKS L  +F ++ F  D   TI   + TK  S+D    +  I DTA
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTA 65

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCD 131
           GQE + A+   Y R   G +LV+ +  RQSF+ + +   + LR     +  ++L+GNK D
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
           L S R VP  +A  F    ++ + E SA    NV+ AF  ++  + +   ++
Sbjct: 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  223 bits (570), Expect = 8e-75
 Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 11/178 (6%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHK---TVKAQIWD 70
            K++++G++  GK+ LL +  + + S      AT+G++ +   + I  K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 71  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNK 129
            AG+E + +    +       + VYD++K Q+  D M  WL  ++  A  +  ++L+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 130 CDLGSLR---AVPTEDAQEFAQRENL-FFMETSALEATNVETAFLTVLTEIYRIISKK 183
            D+   +   A  ++  +E   +       +   + AT    A   +   I       
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  220 bits (564), Expect = 4e-74
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           V+KV+L+G   VGKS L   F   E         G  +  +++ +D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLG 133
           +  R +           ++VY +T + SF+  +    +  R     ++ I+L+GNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
             R V  ++ +  A   +  F+ETSA    NV+  F  V+ +I  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  219 bits (560), Expect = 3e-73
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKT---VKAQIWDT 71
           ++VVLIG+  VGKS L   FA    S+DS    +G +   +TL +D ++   +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL-RGHADKNIVIMLIGNKC 130
            G+  +  +     +     ++VY +T R SF+  +    +L R    ++I I+L+GNK 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
           DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++      K 
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  212 bits (542), Expect = 1e-70
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
              K+ ++G  +VGKS L  +F   +F      TI   F TK ++++ +    Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAG 63

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDL 132
           Q+ Y      Y     G +LVY +T  +SF+ +     + L       I IML+GNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
              R +  E+ +  A+  N  F+E+SA E       F  ++ E  ++    S
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  208 bits (533), Expect = 2e-69
 Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   +  K + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D  ++ ++L+GNK DL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  208 bits (531), Expect = 6e-69
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 3/168 (1%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
              +K+V++GD  VGKS L  +F +  F  D   TI   +  K   ID++     + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTA 74

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCD 131
           GQE + A+   Y R   G ++VY +T + SF+H+ R+   +    D+ +  ++L+ NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTVLTEIYR 178
           L  LR V  +  +E A + N+ ++ETSA +   NV+  F  ++  I +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  207 bits (529), Expect = 9e-69
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           ++V + G   VGKS L+ RF +  F      T+   +  + +S D      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLG 133
           ++ A+           +LVY +T RQS + +    +++        +I IML+GNKCD  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
             R V + +A+  A+     FMETSA    NV+  F  +L    R
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  205 bits (524), Expect = 5e-68
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +KVV++G   VGKS L  +F    F      TI  +F  K + +D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ ++   Y +   G +LVY +  +QSF  +    D+ +R    + + ++L+GNK DL S
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V + + +  A+     FMETSA   T V+  F  ++ ++  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  203 bits (520), Expect = 3e-67
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 3/170 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ K + ID +T    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ +  + ++  R    +++ ++L+GNKCDL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
            R V T+ AQ+ A+   + F+ETSA     V+ AF T++ EI +   K S
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 172

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  203 bits (518), Expect = 3e-67
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI   ++ K + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    ++ LR    +++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 LRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A++  N  F+E+SA    NV   F  ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  204 bits (521), Expect = 4e-67
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 22/212 (10%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
              ++VV+ G   VGKS L+ RF +  F      TI   +  + +S D      QI DT 
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTT 64

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR--GHADKNIVIMLIGNKC 130
           G  ++ A+           +LV+ +T +QS + +      +     + ++I +ML+GNKC
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDE 190
           D  + R V T +AQ  AQ     FMETSA    NV+  F  +LT   R     ++     
Sbjct: 125 DE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKR- 182

Query: 191 HDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222
                             G+ + +   +G C 
Sbjct: 183 -----------------SGKQKRTDRVKGKCT 197

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  202 bits (516), Expect = 2e-66
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   +  K + ID +T    I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF  +  + ++++   D  ++ ++L+GNKCDL +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V T+ A E A+   + F+ETSA     VE AF T++ EI +
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  199 bits (508), Expect = 4e-65
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 4/168 (2%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               K+ + G + VGKS L+ RF    F  +   T+   +     +ID + V  +I DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTA 84

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCD 131
           GQE        + R   G +LVYD+T R SF+ +    +        KN+ ++L+GNK D
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEA-TNVETAFLTVLTEIYR 178
           L   R V TE+ ++ A      F E SA     N+   F  +  E+ R
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (506), Expect = 5e-65
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 6/167 (3%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
             + ++G    GKS L  +F    F  +    +   + +   ++DH+ V  ++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLD 80

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDL 132
             R     Y   A   ++VY +  RQSFD  + +L+ L  HA    ++I  +L+GNK D+
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALE-ATNVETAFLTVLTEIYR 178
              R V   +    A R    F E SA     +V+  F   + E  R
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  193 bits (492), Expect = 4e-59
 Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 12/178 (6%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI--------D 60
                   KV LIGD   GK+ LL +     F      T G+   TK            +
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
            K      WD  GQE   A    +   +   ML+ D     +  +   WL  +  +    
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG-K 150

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
             ++++ NK D      +  +   E        F   S      VE+   ++ + +  
Sbjct: 151 SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  183 bits (467), Expect = 4e-59
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV ++G+ + GKS L+ R+    + V  ++  G  F  K + +D ++    I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTY-VQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDL-- 132
             +     +       + V+ +    SF  +  +   L    +   + ++L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFLTVLTEIYR 178
            + R +    A++ +       + ET A    NVE  F  V  ++  
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  181 bits (461), Expect = 3e-58
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 13/178 (7%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ ++GD+  GKS L+ RF    +    + T   ++  K + +D +T    I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE---LRGHADKNIVIMLIG--NKC 130
             +     +   A   + V+ +    SF  ++R   +   LRG     + + L+G  ++ 
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 131 DLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
              S R V    A+   A  +   + ET A    NV+  F  V  ++  +  ++ L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  145 bits (369), Expect = 2e-44
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
            +      K+V++GD AVGK+ LL  F++ E       T+   F +  +   ++     +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIG 127
           WDTAGQE Y  +    Y  +   +L + +  R SFD+   +W  E++ + D     +L+G
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134

Query: 128 NKCDL--GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
            K DL       V  ++  +  Q+     ++E S++    +   F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  138 bits (350), Expect = 4e-41
 Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
             ++ G+         KVVL+GD   GK+ LL  FA   F      T+   +    L + 
Sbjct: 20  FQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVK 78

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADK 119
            K V   IWDTAGQ+ Y  +   +Y  A   +L +D+T   SFD+   RW  E+     K
Sbjct: 79  GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-K 137

Query: 120 NIVIMLIGNKCDL------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 166
            + I+++G K DL              L  V     QE A+      ++E SA    NV 
Sbjct: 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

Query: 167 TAF 169
             F
Sbjct: 198 AVF 200

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  135 bits (342), Expect = 2e-40
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 14/166 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V +GD AVGK+ LL  +  N F  D   T+   F    + ++  TV   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL-- 132
            Y  +    YRGA   +L + +  + S+++   +W+ EL+ +A   + I+L+G K DL  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRD 126

Query: 133 --------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                        + T   +E  +      ++E S+    NV+  F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  134 bits (340), Expect = 8e-40
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 20/183 (10%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
             NLY     +     K+V++GD A GK+ LL  F+++EF      T+   +    + +D
Sbjct: 15  TENLYFQSMIRK----KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVD 69

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADK 119
            K V+  +WDTAGQE Y  +    Y      ++ + +    S ++   +W+ E++     
Sbjct: 70  GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-P 128

Query: 120 NIVIMLIGNKCDL------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 166
           N+ I+L+ NK DL                 V T+D +  A R   + ++E SA     V 
Sbjct: 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

Query: 167 TAF 169
             F
Sbjct: 189 EVF 191

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  134 bits (338), Expect = 2e-39
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               K+V++GD A GK+ LL  F++++F      T+  E     + +D K V+  +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCD 131
           GQE Y  +    Y      ++ + +    S ++   +W  E++     N+ I+L+GNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 132 L------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           L                 V +E+ ++ A R + F ++E SA     V   F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  133 bits (336), Expect = 4e-39
 Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 35/219 (15%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V +GD AVGK+ +L  +  N+F  D   T+  +  +  +++D + V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL-- 132
            Y  +    YRGA   +L + +  + S+++ + +W+ ELR  A  N+ I+L+G K DL  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRD 127

Query: 133 ------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFLTVLTEIYRIISKKSL 185
                      + +   +E  ++     ++E S+    NV+  F T +  + +   +K  
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE- 186

Query: 186 TANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224
                                   + + +  + GC ++S
Sbjct: 187 ----------------------VPRRRKNHRRSGCSIAS 203

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  130 bits (329), Expect = 4e-38
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+  +  +  + +D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL-- 132
            Y  +    Y      ++ + +    SF+++ A+W  E+R H   N  I+L+G K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148

Query: 133 ----------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                       L  +        A+      ++E SAL    ++T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  126 bits (319), Expect = 6e-37
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K V++GD AVGK+ LL  +  N F  +   T+  +  +  + +D K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  +    Y     +++ + +    SF+++ A+W  E+R H   N  I+L+G K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 133 ---------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                      L  +        A+      ++E SAL    ++T F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  125 bits (316), Expect = 3e-36
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K VL+GD AVGK+ L+  +  N +  +   T   +  +  +S+D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
           +  +    Y      +L + +    SF ++  +W+ E+R H      I+L+G + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139

Query: 133 ---------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
                       + VP E A+  A+      ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  124 bits (312), Expect = 6e-36
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GDS  GK+ LL  FA++ F  +   T+   +   +  ID + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL--- 132
           Y  V    Y  +   ++ +D+++ ++ D  + +W  E++     N  ++L+G K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 133 ---------GSLRAVPTEDAQEFAQRENLF-FMETSALEATN-VETAF 169
                         V  +     A++     ++E SAL++ N V   F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  124 bits (312), Expect = 1e-35
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           +   K+V++GDS  GK+ LL  FA++ F  +   T+   +   +  ID + ++  +WDT+
Sbjct: 26  NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTS 84

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCD 131
           G   Y  V    Y  +   ++ +D+++ ++ D  + +W  E++     N  ++L+G K D
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 143

Query: 132 L------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATN-VETAF 169
           L                 V  +     A++     ++E SAL++ N V   F
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  122 bits (308), Expect = 3e-35
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           +     + K V++GD AVGK+ LL  +A + F  +   T+  +    ++++  K     +
Sbjct: 12  HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGL 70

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIG 127
           +DTAGQE Y  +    Y      ++ + +    SF ++   W+ EL+ +A  N+  +LIG
Sbjct: 71  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIG 129

Query: 128 NKCDL------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
            + DL               + +  E  Q+ A+      ++E SAL    ++T F
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  123 bits (309), Expect = 4e-35
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 10  QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW 69
           Q +    K+VL+GD   GK+ +L   A++ +      T+   +    L  + + V+  +W
Sbjct: 22  QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLW 80

Query: 70  DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGN 128
           DT+G   Y  V    Y  +   +L +D+++ ++ D  + +W  E+  +   +  ++LIG 
Sbjct: 81  DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGC 139

Query: 129 KCDL------------GSLRAVPTEDAQEFAQRENLF-FMETSAL-EATNVETAF 169
           K DL                 +  E     A++     ++E SA     ++ + F
Sbjct: 140 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  119 bits (299), Expect = 3e-33
 Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 66/222 (29%)

Query: 22  GDSAVGKSQLLARFAR---NEFSVDSKATIG-VEFQTKTLSIDH--------------KT 63
           G   +GKS L  RF R   +EF +D  + +   +F  + ++ DH                
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 64  VKAQIW-------DTAGQERYRAVTSAYYRGAV--------------------------- 89
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 90  ----------GAMLVYDMTK--RQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSLR 136
                     G +L  D+++   ++FD   +++  L     K    I+++  KCD G  R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            +        ++ +NL  +ETSA    NV+ AF T++  I +
Sbjct: 215 YIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 86.3 bits (214), Expect = 3e-21
 Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 21/187 (11%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNE----------FSVDSKATIGVEFQTKTL-SIDHKTV 64
           FK+V  G    GK+  L                  + + + T+  +F    +  +     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD------MTKRQSFDHMARWLDELRGHAD 118
           +  ++   GQ  Y A      RG  G + V D          +S  +M   L E  G   
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTL 133

Query: 119 KNIVIMLIGNKCDLGSLRAVPTED-AQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
            ++ I++  NK DL    A+P E              +E  A E   V      V   + 
Sbjct: 134 DDVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191

Query: 178 RIISKKS 184
             ++  S
Sbjct: 192 ARVAGGS 198

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 87.7 bits (217), Expect = 9e-21
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           + ++    + K V++GD AVGK+ LL  +  N F  +   T+  +  +  + +D K V  
Sbjct: 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNL 205

Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIML 125
            +WDTAG E Y  +    Y      ++ + +    SF H  A+W  E+R H   N  I+L
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIIL 264

Query: 126 IGNKCDL------------GSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
           +G K DL              L  +        A+      ++E SAL    ++T F
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 16  FKVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            ++ L+G   + GK+  +   A  +F+ D   T+G  F  +   I    V  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
            R+R++   Y RG    + + D   ++  +     L  L      + I ++++GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 133 GSLRAVPTEDAQEFAQRENL--------FFMETSALEATNVETAF 169
           G+L      D +E  ++ NL             S  E  N++   
Sbjct: 138 GAL------DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    E  V +  TIG  F  +T  +++K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVET--VEYKNICFTVWDVGGQD 84

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
           + R +   Y++   G + V D   R+     A  L ++    + ++ V+++  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 135 LRAVPTEDAQEFAQRENL-----FFMETSALEATNVETAF 169
             A+P  +  +    ++L     +   T A + T +    
Sbjct: 145 --AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.4 bits (163), Expect = 6e-14
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E  V +  TIG  F  +T  + +K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVET--VTYKNLKFQVWDLGGLT 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-G 133
             R     YY      + V D   R         L  +    + +  ++++  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 134 SLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
           ++ +    ++        R      +TSA + T ++ A 
Sbjct: 123 AMTSSEMANSLGLPALKDR-KWQIFKTSATKGTGLDEAM 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 2   SNLYGDYNQKIDYVFKVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
           S L    +Q+     KV+++G D+A GK+ +L +F+ NE  V +  TIG     +   I 
Sbjct: 12  SGLVPRGSQE----HKVIIVGLDNA-GKTTILYQFSMNEV-VHTSPTIG--SNVEE--IV 61

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-K 119
               +  +WD  GQE  R+  + YY      ++V D T R+        L ++  H D +
Sbjct: 62  INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 121

Query: 120 NIVIMLIGNKCDL-GSLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
              +++  NK D+   +                          AL    +    
Sbjct: 122 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH-QWHIQACCALTGEGLCQGL 174

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV+++G    GK+ +L +F+ NE  V +  TIG     +   I     +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG--SNVEE--IVINNTRFLMWDIGGQE 71

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-G 133
             R+  + YY      ++V D T R+        L ++  H D +   +++  NK D+  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 134 SLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
            +                          AL    +    
Sbjct: 132 CMTVAEISQFLKLTSIKDH-QWHIQACCALTGEGLCQGL 169

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 13/160 (8%)

Query: 16  FKVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +V+++G D+A GK+ +L R    +  V +  T+G     +T  + +K +  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDV-VTTVPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
              R     Y+      + V D T R         L  L    + +  ++++  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 133 GSLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
            +       +         R       +S+     +    
Sbjct: 137 DAASEAEIAEQLGVSSIMNRTWTIVK-SSSKTGDGLVEGM 175

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 13/160 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E  V +K TIG  F  +T  + +K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-G 133
             R     YY      + V D T +      ++ L  +    + ++  +++  NK D  G
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 134 SLRAVPTEDAQEFA----QRENLFFMETSALEATNVETAF 169
           +L    +E ++E      +  +   + +SA++   +    
Sbjct: 134 ALS--ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E  V +  TIG  F  +T  +++K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-GS 134
            R +   Y++   G + V D   R+  +     L  +    + ++ V+++  NK DL  +
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 135 LRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
           + A    D         R N +   T A     +    
Sbjct: 117 MNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYEGL 153

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L +F   +       T+G  F  KT  ++H+  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLG--FNIKT--LEHRGFKLNIWDVGGQK 73

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-G 133
             R+    Y+    G + V D   RQ      R L  L          +++  NK DL G
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 134 SLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
           +L     ++A          +      SA+   ++    
Sbjct: 134 ALSCNAIQEALELDSIRSH-HWRIQGCSAVTGEDLLPGI 171

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 13/160 (8%)

Query: 16  FKVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
            +++L+G D+A GK+ LL + A  +       T G  F  K+  +  +  K  +WD  GQ
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDI-SHITPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
            + R    +Y+      + V D   R+ F+   + L EL        + +++  NK DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 133 GSLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
            +  A    +         R        SAL    V+   
Sbjct: 131 TAAPASEIAEGLNLHTIRDR-VWQIQSCSALTGEGVQDGM 169

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 19/177 (10%)

Query: 2   SNLYGDYNQKIDYVFKVVLIG-DSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSI 59
           S L    +++      V+ +G D++ GK+ ++ +   +   S +   TIG  F  +    
Sbjct: 12  SGLVPRGSKE----VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEK--F 62

Query: 60  DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH--- 116
              ++   ++D +GQ RYR +   YY+     + V D + R         LD L  H   
Sbjct: 63  KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI 122

Query: 117 ADKNIVIMLIGNKCDL-GSLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
             + I I+   NK DL  ++ +V        +    +       + A++   ++   
Sbjct: 123 KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK-PWHICASDAIKGEGLQEGV 178

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 26/180 (14%)

Query: 17  KVVLIGDSAVGKS----QLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           +++L+G    GKS     +  + + NE ++  ++T         +S     V  QIWD  
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNK--IYKDDISNSSF-VNFQIWDFP 77

Query: 73  GQERYRAVTS---AYYRGAVGAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIG 127
           GQ  +   T      +RG    + V D      ++   +   + +     + ++   +  
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFI 136

Query: 128 NKCDLGS--LRAVPTEDAQEFAQRE---------NLFFMETSALEATNVETAFLTVLTEI 176
           +K D  S   +     D  + A  +         +L F  TS  + + +  AF  V+ ++
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 62.3 bits (151), Expect = 8e-12
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 25/181 (13%)

Query: 17  KVVLIGDSAVGKS----QLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           K++L+G S  GKS     + + ++  +      ATI VE            +   +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLG-ATIDVEHSHLRFL---GNMTLNLWDCG 60

Query: 73  GQERYRAVT-----SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR--GHADKNIVIML 125
           GQ+ +            ++     + V+D+   +    +  +   L+       +  I +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 126 IGNKCDL--GSLRAVPTEDAQEFAQRE-------NLFFMETSALEATNVETAFLTVLTEI 176
           + +K DL     R    +   +            NL    TS  + +  + A+  ++  +
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYK-AWSQIVCSL 179

Query: 177 Y 177
            
Sbjct: 180 I 180

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 17  KVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           K++ +G D+A GK+ LL     +      + T      ++   +    +K   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRL-ATLQPTWH--PTSEE--LAIGNIKFTTFDLGGHI 78

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
           + R +   Y+    G + + D    + FD     LD L   A+ K++  +++GNK D 
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 17  KVVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           K+V +G D+A GK+ LL     +        T+     ++   +    +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRL-GQHVPTLH--PTSEE--LTIAGMTFTTFDLGGHI 80

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
           + R V   Y     G + + D    +        LD L       N+ I+++GNK D 
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 11/174 (6%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
                           +++++G  A GK+ +L +    E  V +  TIG  F  +T  ++
Sbjct: 151 NWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVET--VE 205

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-K 119
           +K +   +WD  GQ++ R +   Y++   G + V D   R+  +     L  +    + +
Sbjct: 206 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 265

Query: 120 NIVIMLIGNKCDL-GSLRAVPTEDA---QEFAQRENLFFMETSALEATNVETAF 169
           + V+++  NK DL  ++ A    D         R N +   T A     +    
Sbjct: 266 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYEGL 318

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQE 75
            V+ +G    GK+ L  R    ++  D++ +I     +    + +++     + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76  RYRA-VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL------RGHADKNIVIMLIGN 128
             R  +   +   A   + V D    Q         + L            +  +++  N
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIACN 123

Query: 129 KCDL 132
           K D+
Sbjct: 124 KQDI 127

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIG-VEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++ G    GK+ LL     +     +  +   +       + D+      + D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEPLS------AADYDGSGVTLVDFPGHV 102

Query: 76  RYRAVTSAYYR----GAVGAMLVYD-MTKRQSFDHMARWLDEL----RGHADKNIVIMLI 126
           + R   S Y +       G + + D     +     A +L ++        +  I I++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 127 GNKCDLGSLRAVPTEDAQEFAQRE 150
            NK +L    A P    ++  + E
Sbjct: 163 CNKSEL--FTARPPSKIKDALESE 184

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           +++ G    GK+ LL     +     +  +          + D+      + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 78  RAVTSAYYRGAVGAM--LVY--D-MTKRQSFDHMARWLDEL----RGHADKNIVIMLIGN 128
           R   S Y +     +  L++  D     +     A +L ++        +  I I++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 129 KCDLGSLRAVPTEDAQEFAQRE 150
           K +L +  A P    ++  + E
Sbjct: 129 KSELFT--ARPPSKIKDALESE 148

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 22/142 (15%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA----QIWDTAG 73
           V+L+G    GKS +      N   +D+       +   T +   +         + +  G
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTL------YLESTSNPSLEHFSTLIDLAVMELPG 55

Query: 74  QERYRAVT---SAYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGN 128
           Q  Y   +      ++     + V D       +  ++A  ++      + +I I ++ +
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIH 114

Query: 129 KCDLGSLRAVPTEDAQEFAQRE 150
           K D  S      ED +  AQR+
Sbjct: 115 KVDGLS------EDFKVDAQRD 130

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI---DHKTVKAQIWDTAG- 73
           VV+ G   VGKS LL      +  + S       F T+ +++   +    + QI DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYP-----FTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 74  -----QER----YRAVTSAYYRGAVGAMLVYDMT--KRQSFDHMARWLDELRGH-ADKNI 121
                 ER     +A+ +  Y G +  + ++D +       +      +E+ G   D   
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF 283

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
           ++++  NK D+     +  +  ++F + + L  ++ SAL+ T ++     V  EI + + 
Sbjct: 284 LVVI--NKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGID----LVKEEIIKTLR 335

Query: 182 K 182
            
Sbjct: 336 P 336

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 16/145 (11%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLL-ARFARNEFSVDSKATIGVEFQTKTLSI 59
           +   +G   QK      V+++G   VGKS  + +        V      G+     + ++
Sbjct: 22  LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM 81

Query: 60  DHKTVKAQIWDTAG-----------QERYRAVTSAYYRGAVGAMLVYDMTKRQSFD-HMA 107
              T+   I DT G            E  +          +  +   D+      D  + 
Sbjct: 82  GGFTIN--IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVV 139

Query: 108 RWLDELRGHADKNIVIMLIGNKCDL 132
             + +  G       ++++      
Sbjct: 140 IAITQTFGKEIWCKTLLVL-THAQF 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.7
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.63
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.63
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.6
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.51
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.47
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.45
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.37
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.37
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.34
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.33
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.93
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.85
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.84
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.82
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.78
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.61
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.49
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.3
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.29
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.23
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.17
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.12
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.9
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.83
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.71
2xxa_A	433	Signal recognition particle protein; protein trans	97.57
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.46
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.39
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.3
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.27
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.12
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.11
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.11
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.09
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.07
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.06
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.06
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.04
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.04
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.03
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.01
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.98
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.95
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.94
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.94
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.88
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.87
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.86
3co5_A	143	Putative two-component system transcriptional RES	96.85
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.85
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.84
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.83
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.82
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.81
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.8
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.8
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.78
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.78
1g6h_A	257	High-affinity branched-chain amino acid transport	96.78
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.76
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.76
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.75
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.74
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.74
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.74
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.73
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.73
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.73
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.72
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.72
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.72
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.71
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.69
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.69
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.69
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.67
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.66
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.65
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.65
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.65
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.64
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.64
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.64
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.62
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.61
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.61
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.6
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.6
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.6
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.59
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.59
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.58
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.57
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.56
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.56
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.55
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.55
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.55
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.52
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.5
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.49
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.48
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.48
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.47
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.46
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.45
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.43
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.42
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.41
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.41
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.41
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.4
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.4
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.4
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.4
3uc9_A	233	Increased recombination centers protein 6; rossman	96.39
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.39
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.39
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.39
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.38
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.38
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.38
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.36
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.35
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.34
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.34
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.34
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.34
1via_A	175	Shikimate kinase; structural genomics, transferase	96.34
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.33
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.33
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.32
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.32
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.31
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.28
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.28
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.27
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.27
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.26
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.26
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.23
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.23
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.22
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.21
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.21
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.19
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.19
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.18
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.16
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.16
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.15
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.14
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.12
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.12
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.11
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.11
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.11
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.11
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.1
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.1
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.09
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.08
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.04
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.02
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.02
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.01
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.98
2og2_A	359	Putative signal recognition particle receptor; nuc	95.97
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.96
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.91
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.91
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.9
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.9
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.89
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.88
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.87
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.86
3bos_A	242	Putative DNA replication factor; P-loop containing	95.83
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.82
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.81
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.79
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.77
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.69
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.67
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.65
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.63
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.62
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.54
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.53
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.52
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.52
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.51
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.5
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.49
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.45
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.43
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.42
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.4
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.33
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.33
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.28
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.28
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.22
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.17
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.17
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.12
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.08
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.07
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.01
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.99
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.99
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.98
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.96
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.91
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.9
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.9
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.88
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.85
2qgz_A	308	Helicase loader, putative primosome component; str	94.85
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.81
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.81
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.79
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.76
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.71
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.7
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.66
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.63
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.63
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.62
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.61
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.54
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.53
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.53
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.53
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.52
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.5
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.49
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.46
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.43
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.4
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.39

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=9.5e-43  Score=265.12  Aligned_cols=170  Identities=37%  Similarity=0.683  Sum_probs=146.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +.+.+||+|+|++|||||||+++|..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34568999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+.+....++|++||+||+|+.+.+.++.+++++++++++++|++|||++|.||+++|..
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877778999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027382          172 VLTEIYRIIS  181 (224)
Q Consensus       172 i~~~i~~~~~  181 (224)
                      |++.+.....
T Consensus       170 i~~~i~~~~~  179 (216)
T 4dkx_A          170 VAAALPGMES  179 (216)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHhhhc
Confidence            9988765443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=6.1e-37  Score=231.74  Aligned_cols=173  Identities=50%  Similarity=0.844  Sum_probs=159.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            46788999999999999999999999999888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877666899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 027382          171 TVLTEIYRIISKK  183 (224)
Q Consensus       171 ~i~~~i~~~~~~~  183 (224)
                      ++.+.+.+.....
T Consensus       164 ~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          164 TMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998775544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-37  Score=236.01  Aligned_cols=179  Identities=59%  Similarity=0.981  Sum_probs=148.0

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      +....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.
T Consensus         6 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   85 (223)
T 3cpj_B            6 YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG   85 (223)
T ss_dssp             ----CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTT
T ss_pred             cCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhcc
Confidence            44456788999999999999999999999999888888888888888888888888999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+++.|+++
T Consensus        86 ~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           86 AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999998877666899999999999987677888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCC
Q 027382          168 AFLTVLTEIYRIISKKSLT  186 (224)
Q Consensus       168 ~~~~i~~~i~~~~~~~~~~  186 (224)
                      +|+++++.+.+........
T Consensus       166 l~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          166 AFEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             HHHHHHHHHTTCC------
T ss_pred             HHHHHHHHHHHHhhhcccC
Confidence            9999999987766555443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=223.09  Aligned_cols=169  Identities=33%  Similarity=0.517  Sum_probs=150.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            445679999999999999999999999888777777766554 4556678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877653 579999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          170 LTVLTEIYRII  180 (224)
Q Consensus       170 ~~i~~~i~~~~  180 (224)
                      .++++.+.+..
T Consensus       169 ~~l~~~i~~~~  179 (206)
T 2bov_A          169 FDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999987754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2e-35  Score=223.28  Aligned_cols=171  Identities=40%  Similarity=0.676  Sum_probs=150.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            46678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEATNV  165 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v  165 (224)
                      +|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999887765442    478999999999997 35667888888888 66789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 027382          166 ETAFLTVLTEIYRIISK  182 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~~  182 (224)
                      +++|++|.+.+.+....
T Consensus       163 ~~l~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          163 EQAFQTIARNALKQETE  179 (207)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.1e-34  Score=215.62  Aligned_cols=179  Identities=47%  Similarity=0.779  Sum_probs=160.8

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      .|.+..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus         2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   81 (186)
T 2bme_A            2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR   81 (186)
T ss_dssp             --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred             CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence            45566788999999999999999999999999988888888888888888888888899999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++|+|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+...++.+++...+++++++||++|.|++
T Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE  161 (186)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            99999999999999999999999988887666689999999999997767788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccC
Q 027382          167 TAFLTVLTEIYRIISKKSL  185 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~~~~  185 (224)
                      ++|+++.+.+.+.......
T Consensus       162 ~l~~~l~~~~~~~~~~~~~  180 (186)
T 2bme_A          162 EAFVQCARKILNKIESGEL  180 (186)
T ss_dssp             HHHHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHhhhcCC
Confidence            9999999999887655443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=215.48  Aligned_cols=176  Identities=48%  Similarity=0.819  Sum_probs=160.3

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      ++...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   88 (196)
T 3tkl_A            9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG   88 (196)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred             cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence            45567789999999999999999999999999888888888888888888899999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|+++
T Consensus        89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            99999999999999999999999999887777899999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 027382          168 AFLTVLTEIYRIISKK  183 (224)
Q Consensus       168 ~~~~i~~~i~~~~~~~  183 (224)
                      +|.++.+.+.+.....
T Consensus       169 l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998765543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.2e-35  Score=218.09  Aligned_cols=174  Identities=45%  Similarity=0.817  Sum_probs=129.7

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      +..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (183)
T 2fu5_C            3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   82 (183)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence            44678999999999999999999999998887777888888888788888888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887666689999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027382          170 LTVLTEIYRIISKK  183 (224)
Q Consensus       170 ~~i~~~i~~~~~~~  183 (224)
                      .++.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (183)
T 2fu5_C          163 FTLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999988765543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=218.86  Aligned_cols=176  Identities=41%  Similarity=0.725  Sum_probs=158.0

Q ss_pred             cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382            6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY   85 (224)
Q Consensus         6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   85 (224)
                      ...+++++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus        17 ~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   96 (201)
T 2ew1_A           17 RGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY   96 (201)
T ss_dssp             -----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGS
T ss_pred             CCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHH
Confidence            34455678899999999999999999999999998888888888888888888889999999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      +.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.|+
T Consensus        97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A           97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV  176 (201)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999988776668999999999999876778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027382          166 ETAFLTVLTEIYRIIS  181 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~  181 (224)
                      +++|.++++.+.+...
T Consensus       177 ~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          177 EKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998887653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3e-34  Score=214.51  Aligned_cols=176  Identities=51%  Similarity=0.860  Sum_probs=156.1

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      +.+......+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus        13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            34456778999999999999999999999999888778888888888888888889999999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999887766689999999999997767788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 027382          167 TAFLTVLTEIYRIISK  182 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~  182 (224)
                      ++|++|++.+.+...+
T Consensus       173 ~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          173 EAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999876654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=216.64  Aligned_cols=172  Identities=49%  Similarity=0.794  Sum_probs=147.5

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      +++.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            45677899999999999999999999999988777888878888888888888889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  167 (224)
                      |++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++ +++++||++|.|+++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999998877666899999999999987677888999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRII  180 (224)
Q Consensus       168 ~~~~i~~~i~~~~  180 (224)
                      +|.+|++.+.+..
T Consensus       183 l~~~l~~~i~~~~  195 (201)
T 2hup_A          183 AFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=216.44  Aligned_cols=179  Identities=48%  Similarity=0.761  Sum_probs=148.6

Q ss_pred             cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382            6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY   85 (224)
Q Consensus         6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   85 (224)
                      +...+..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus        16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   95 (200)
T 2o52_A           16 PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYY   95 (200)
T ss_dssp             ------CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHh
Confidence            34555678899999999999999999999999988888888888888888888888899999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      +.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+...++.++++..+++++++||++|.|+
T Consensus        96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi  175 (200)
T 2o52_A           96 RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV  175 (200)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999888766668999999999999776778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q 027382          166 ETAFLTVLTEIYRIISKKS  184 (224)
Q Consensus       166 ~~~~~~i~~~i~~~~~~~~  184 (224)
                      +++|.++++.+.+......
T Consensus       176 ~~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          176 EEAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999987765543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=211.18  Aligned_cols=175  Identities=45%  Similarity=0.723  Sum_probs=155.3

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      |.+..+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            45567899999999999999999999999998888888888888888888888999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|++++|||+++++++..+..|+..+..... +.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999999999998877553 799999999999987777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 027382          168 AFLTVLTEIYRIISKK  183 (224)
Q Consensus       168 ~~~~i~~~i~~~~~~~  183 (224)
                      +|+++.+.+.+.....
T Consensus       161 l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          161 MFNCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999988776544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.7e-34  Score=212.51  Aligned_cols=175  Identities=61%  Similarity=0.969  Sum_probs=158.1

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      ...++++..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34456778999999999999999999999999988888888888888888888889999999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999887766689999999999997767778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027382          167 TAFLTVLTEIYRIIS  181 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~  181 (224)
                      ++|.+|++.+.+...
T Consensus       177 ~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          177 LAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999877654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=8.7e-34  Score=209.22  Aligned_cols=169  Identities=49%  Similarity=0.866  Sum_probs=154.2

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      ...+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34678899999999999999999999999988778888888888888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766689999999999997767788899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          170 LTVLTEIYR  178 (224)
Q Consensus       170 ~~i~~~i~~  178 (224)
                      +++++.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999987743

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=9.6e-34  Score=211.38  Aligned_cols=172  Identities=41%  Similarity=0.748  Sum_probs=156.7

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   95 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA   95 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence            34566889999999999999999999999998878888888888888888888899999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      |++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++
T Consensus        96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  175 (189)
T 2gf9_A           96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV  175 (189)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999888776568999999999999876778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          169 FLTVLTEIYRII  180 (224)
Q Consensus       169 ~~~i~~~i~~~~  180 (224)
                      |+++.+.+.+..
T Consensus       176 ~~~l~~~i~~~~  187 (189)
T 2gf9_A          176 FERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.8e-35  Score=218.03  Aligned_cols=175  Identities=42%  Similarity=0.746  Sum_probs=160.4

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR   86 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   86 (224)
                      ..+++++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++
T Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (191)
T 3dz8_A           15 YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR   94 (191)
T ss_dssp             EETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred             ccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence            34667889999999999999999999999999888888888888888888888888899999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++
T Consensus        95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A           95 GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999988766789999999999998777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027382          167 TAFLTVLTEIYRIIS  181 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~  181 (224)
                      ++|+++++.+.+...
T Consensus       175 ~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          175 QAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998877643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-33  Score=212.13  Aligned_cols=173  Identities=39%  Similarity=0.735  Sum_probs=158.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            35678999999999999999999999999888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988876656899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 027382          171 TVLTEIYRIISKK  183 (224)
Q Consensus       171 ~i~~~i~~~~~~~  183 (224)
                      +|.+.+.+.....
T Consensus       164 ~l~~~i~~~~~~~  176 (203)
T 1zbd_A          164 RLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.9e-33  Score=207.95  Aligned_cols=168  Identities=45%  Similarity=0.753  Sum_probs=152.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45678999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998887666899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          171 TVLTEIYR  178 (224)
Q Consensus       171 ~i~~~i~~  178 (224)
                      +|.+.+.+
T Consensus       168 ~l~~~~~~  175 (181)
T 2efe_B          168 EIARRLPR  175 (181)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99876643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.9e-33  Score=205.55  Aligned_cols=165  Identities=47%  Similarity=0.767  Sum_probs=151.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45789999999999999999999999988887888888888888888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999776777888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            88654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.6e-34  Score=212.30  Aligned_cols=172  Identities=38%  Similarity=0.728  Sum_probs=148.0

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      .+.+.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus        19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (192)
T 2il1_A           19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS   98 (192)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            34567789999999999999999999999998887888888888888888888889999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~  166 (224)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.. +++++++||++|.|++
T Consensus        99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A           99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            999999999999999999999998888776678999999999999877778888899999885 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRI  179 (224)
Q Consensus       167 ~~~~~i~~~i~~~  179 (224)
                      ++|++|.+.+.+.
T Consensus       179 ~l~~~l~~~i~~~  191 (192)
T 2il1_A          179 EIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=4.1e-33  Score=203.95  Aligned_cols=165  Identities=41%  Similarity=0.732  Sum_probs=152.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ..+.+||+++|++|+|||||+++|.+..+...+.++.+.++......+.+..+.+.+||+||.+.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            45679999999999999999999999998888888888888888888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999988876678999999999999876778888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      +.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=6.6e-34  Score=208.26  Aligned_cols=166  Identities=39%  Similarity=0.680  Sum_probs=144.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999988877888888888878888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887765557999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          172 VLTEIY  177 (224)
Q Consensus       172 i~~~i~  177 (224)
                      +.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.7e-33  Score=208.42  Aligned_cols=173  Identities=36%  Similarity=0.653  Sum_probs=154.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE-EEEEEECCe---------EEEEEEEeCCChhhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ-TKTLSIDHK---------TVKAQIWDTAGQERYRAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~   80 (224)
                      +.+..++|+|+|++|||||||+++|.+..+...+.++.+.++. ...+...+.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            5678999999999999999999999998887778888887776 555656555         789999999999999999


Q ss_pred             hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382           81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus        81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      +..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999998877654 57999999999999876778888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcc
Q 027382          160 LEATNVETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~i~~~~~~~  183 (224)
                      +++.|++++|.+|.+.+.+...+.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999998776544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3.4e-33  Score=207.11  Aligned_cols=170  Identities=31%  Similarity=0.481  Sum_probs=151.5

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      +.......+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   89 (183)
T 3kkq_A           11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT   89 (183)
T ss_dssp             ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred             CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence            344566789999999999999999999999988888888877666 6667788899999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC-CCCCH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL-EATNV  165 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v  165 (224)
                      +|++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..++++++++||+ ++.|+
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v  169 (183)
T 3kkq_A           90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV  169 (183)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence            999999999999999999999998886543 3579999999999998878889999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYR  178 (224)
Q Consensus       166 ~~~~~~i~~~i~~  178 (224)
                      +++|+.+.+.+.+
T Consensus       170 ~~l~~~l~~~i~~  182 (183)
T 3kkq_A          170 DKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=5.9e-33  Score=206.58  Aligned_cols=169  Identities=34%  Similarity=0.548  Sum_probs=146.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|||||||+++|.+..+...+.++.+ +.......+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999888777777753 444566677889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++++++..++++++++||++|.|++++|.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887754 35799999999999974 556788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027382          172 VLTEIYRIISKK  183 (224)
Q Consensus       172 i~~~i~~~~~~~  183 (224)
                      +.+.+.+.....
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999987765543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-33  Score=205.84  Aligned_cols=170  Identities=45%  Similarity=0.725  Sum_probs=145.2

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      +..+..++|+++|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34678899999999999999999999998875 45677778888777778888899999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776668999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          169 FLTVLTEIYRI  179 (224)
Q Consensus       169 ~~~i~~~i~~~  179 (224)
                      |+++.+.+.+.
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.8e-33  Score=205.78  Aligned_cols=165  Identities=42%  Similarity=0.767  Sum_probs=144.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            57899999999999999999999998887788887878887888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||++++.++..+..|+..+......+.|+++|+||+|+. .+.+..++++++++.++++++++||++|.|++++|.++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998888766689999999999994 356778889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          174 TEIYRI  179 (224)
Q Consensus       174 ~~i~~~  179 (224)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=210.94  Aligned_cols=168  Identities=42%  Similarity=0.728  Sum_probs=152.4

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      +.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            44678899999999999999999999999887778888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|+|||+++++++..+..|+..+.+....+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|++++|
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999999888766689999999999997667788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          170 LTVLTEIY  177 (224)
Q Consensus       170 ~~i~~~i~  177 (224)
                      ++|.+.+.
T Consensus       178 ~~l~~~i~  185 (192)
T 2fg5_A          178 QGISRQIP  185 (192)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHH
Confidence            99987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.6e-33  Score=213.36  Aligned_cols=175  Identities=38%  Similarity=0.670  Sum_probs=153.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe----------EEEEEEEeCCChhhhh
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK----------TVKAQIWDTAGQERYR   78 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~   78 (224)
                      .+.+++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++.          .+.+.+||+||++.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            445688999999999999999999999998887777777777777666666655          7899999999999999


Q ss_pred             hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382           79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMET  157 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (224)
                      ..+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            9999999999999999999999999999999887766543 579999999999998767788899999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382          158 SALEATNVETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~~~~~  183 (224)
                      ||+++.|++++|++|.+.+.+.....
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~~~  204 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRMEQC  204 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999988765543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-33  Score=203.61  Aligned_cols=163  Identities=44%  Similarity=0.734  Sum_probs=148.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL---RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      |||++++.++..+..|+..+......+.|+++|+||+|+.+.   +.+..++.++++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999888776668999999999999654   56778889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          171 TVLTEI  176 (224)
Q Consensus       171 ~i~~~i  176 (224)
                      ++.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4.7e-33  Score=205.64  Aligned_cols=171  Identities=30%  Similarity=0.500  Sum_probs=151.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ..+....++|+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            445677899999999999999999999999887778888776655 5667788889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      |++++|||+++++++..+..|+..+.+. ...+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999999999887443 345799999999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRII  180 (224)
Q Consensus       168 ~~~~i~~~i~~~~  180 (224)
                      +|+++.+.+.+..
T Consensus       162 l~~~l~~~~~~~~  174 (181)
T 2fn4_A          162 AFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.4e-34  Score=212.76  Aligned_cols=164  Identities=32%  Similarity=0.432  Sum_probs=142.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            456799999999999999999999998887777777665443 4456788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|||++++++++.+..|+..+.+...  .+.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999999888877766432  3689999999999975 5567888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          170 LTVLTEIY  177 (224)
Q Consensus       170 ~~i~~~i~  177 (224)
                      +++++.+.
T Consensus       163 ~~l~~~~~  170 (199)
T 2gf0_A          163 QELLTLET  170 (199)
T ss_dssp             HHHHHHCS
T ss_pred             HHHHHHHh
Confidence            99987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.8e-33  Score=206.50  Aligned_cols=167  Identities=30%  Similarity=0.423  Sum_probs=149.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+++|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            45689999999999999999999999888888888877776 66777888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      ++|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            999999999999999999988866543 5799999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          171 TVLTEIYRI  179 (224)
Q Consensus       171 ~i~~~i~~~  179 (224)
                      .+++.+.+.
T Consensus       162 ~l~~~~~~~  170 (181)
T 3t5g_A          162 RIILEAEKM  170 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999887654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.4e-33  Score=204.81  Aligned_cols=166  Identities=35%  Similarity=0.622  Sum_probs=150.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998887655 47999999999999776777888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          172 VLTEIYR  178 (224)
Q Consensus       172 i~~~i~~  178 (224)
                      +.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9987753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=202.85  Aligned_cols=168  Identities=27%  Similarity=0.378  Sum_probs=138.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhhHhHhcCCCE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVTSAYYRGAVG   90 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~   90 (224)
                      +..+||+++|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            357999999999999999999999988755443 457777777788888999999999999887  56677888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 3579999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027382          170 LTVLTEIYRIIS  181 (224)
Q Consensus       170 ~~i~~~i~~~~~  181 (224)
                      +++.+.+.+...
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999998876544

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=205.52  Aligned_cols=171  Identities=42%  Similarity=0.760  Sum_probs=154.1

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      |.+.....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (195)
T 1x3s_A            8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG   87 (195)
T ss_dssp             -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred             cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            44556788999999999999999999999999888888888888888888888999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      +|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +.+..+++.+++..++++++++||+++.|++
T Consensus        88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQ  166 (195)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            9999999999999999999999998877653 5799999999999954 5677888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRI  179 (224)
Q Consensus       167 ~~~~~i~~~i~~~  179 (224)
                      ++|+++.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (195)
T 1x3s_A          167 CAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=208.37  Aligned_cols=173  Identities=41%  Similarity=0.746  Sum_probs=153.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            45678999999999999999999999998887888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++++++..++++++++||+++.|++++|.
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999998887766679999999999994 456778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 027382          171 TVLTEIYRIISKKS  184 (224)
Q Consensus       171 ~i~~~i~~~~~~~~  184 (224)
                      +|.+.+.+......
T Consensus       175 ~l~~~~~~~~~~~~  188 (213)
T 3cph_A          175 TLAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999887765443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=4.4e-33  Score=209.05  Aligned_cols=170  Identities=25%  Similarity=0.342  Sum_probs=143.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhHhcC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-VTSAYYRG   87 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~   87 (224)
                      +.+....+||+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            33556889999999999999999999986554444445556666667777889999999999999987654 77888999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      +|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~  176 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR  176 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence            9999999999999999999999988876543 579999999999998777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYR  178 (224)
Q Consensus       167 ~~~~~i~~~i~~  178 (224)
                      ++|..+++.+.+
T Consensus       177 ~lf~~l~~~i~~  188 (195)
T 3cbq_A          177 ELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.9e-32  Score=201.84  Aligned_cols=167  Identities=40%  Similarity=0.679  Sum_probs=146.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +.+..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEATNV  165 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v  165 (224)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    578999999999997 46677888999998 56789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYR  178 (224)
Q Consensus       166 ~~~~~~i~~~i~~  178 (224)
                      +++|+++++.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.5e-33  Score=205.38  Aligned_cols=167  Identities=39%  Similarity=0.706  Sum_probs=151.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            34567999999999999999999999998888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888776666899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          171 TVLTEIY  177 (224)
Q Consensus       171 ~i~~~i~  177 (224)
                      ++.+.+.
T Consensus       170 ~l~~~~~  176 (179)
T 2y8e_A          170 RVAAALP  176 (179)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=210.46  Aligned_cols=167  Identities=40%  Similarity=0.689  Sum_probs=139.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            45678999999999999999999999998877777888888888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG------SLRAVPTEDAQEFAQRENLFFMETSALEATN  164 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (224)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..+++++++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999998887665679999999999995      3466778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIY  177 (224)
Q Consensus       165 v~~~~~~i~~~i~  177 (224)
                      ++++|.++++.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.5e-32  Score=204.81  Aligned_cols=166  Identities=42%  Similarity=0.739  Sum_probs=147.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhHhcCCCE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-AVTSAYYRGAVG   90 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~   90 (224)
                      ....+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            4467999999999999999999999999888888888888888888888889999999999999988 889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC---CCHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA---TNVE  166 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~  166 (224)
                      +|+|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..++++++++||+++   .|+.
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999998887765 467999999999999877778889999999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++|.+|++.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.1e-32  Score=201.74  Aligned_cols=164  Identities=26%  Similarity=0.355  Sum_probs=133.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhHhcCCCEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-VTSAYYRGAVGAML   93 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vi~   93 (224)
                      .+||+++|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999999999998777666666666777777788899999999999999988865 77788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999988877654 479999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          173 LTEIYR  178 (224)
Q Consensus       173 ~~~i~~  178 (224)
                      ++.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=4.4e-32  Score=204.14  Aligned_cols=167  Identities=36%  Similarity=0.675  Sum_probs=148.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeE----------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT----------------------------   63 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   63 (224)
                      .+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999999888888888888877777776554                            


Q ss_pred             ---------EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           64 ---------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        64 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                               +.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+.....  .|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence                     8999999999999999999999999999999999999999999999988877653  99999999999 55


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      .+.+..+++++++...+++++++||++|.|++++|+++.+.+.+..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            56778899999999999999999999999999999999998877643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=4.4e-33  Score=205.43  Aligned_cols=167  Identities=32%  Similarity=0.504  Sum_probs=147.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999999888777778878788878887865 67999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD--KNIV-IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +++|||++++++++.+..|+..+.....  ...| +++|+||+|+.+.+.+..++++++++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888876432  1345 899999999987677888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          168 AFLTVLTEIYR  178 (224)
Q Consensus       168 ~~~~i~~~i~~  178 (224)
                      +|.++.+.+.+
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987743

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=9.1e-33  Score=205.93  Aligned_cols=165  Identities=27%  Similarity=0.444  Sum_probs=141.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +....+||+|+|++|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+..+ ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            456789999999999999999999999998888888877665 345667889999999999999888764 678999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC-CCCCCHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA-LEATNVE  166 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~  166 (224)
                      +++|||++++++++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++++++..++++++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            9999999999999999999988876531   47999999999999877778889999999999999999999 8999999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++|+.+++.+.
T Consensus       175 ~lf~~l~~~i~  185 (187)
T 3c5c_A          175 HVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998774

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=9.3e-33  Score=204.19  Aligned_cols=170  Identities=38%  Similarity=0.658  Sum_probs=135.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      +.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            46678999999999999999999999998888888887878877777776 56789999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQ-RENLFFMETSALEAT  163 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  163 (224)
                      ++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ .+.+..+++.+++. ..+.+++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988776542    5799999999999953 34567888999988 466889999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYRII  180 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~~  180 (224)
                      |++++|+++.+.+.+..
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7e-32  Score=200.65  Aligned_cols=163  Identities=19%  Similarity=0.328  Sum_probs=142.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+|+|++|||||||+++|+++.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+.     +++.+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            4557899999999999999999999999988777776 3333 4677788999999999999988766     7788999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCC--CCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL--GSLRAVPTEDAQEFAQREN-LFFMETSALEATNVE  166 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~  166 (224)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+  ...+.+..+++++++..++ ++|+++||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999987653 57999999999999  3456788899999999997 899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRII  180 (224)
Q Consensus       167 ~~~~~i~~~i~~~~  180 (224)
                      ++|.++++.+.+..
T Consensus       169 ~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          169 RVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.7e-32  Score=204.35  Aligned_cols=167  Identities=25%  Similarity=0.461  Sum_probs=146.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            4567899999999999999999999999988788888766655 456678899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 027382           91 AMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL--RAVPTEDAQEFAQRENLF-FMETSALEATNVE  166 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  166 (224)
                      +|+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.  +.+..+++++++..+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 66888877654 47999999999999753  667889999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRI  179 (224)
Q Consensus       167 ~~~~~i~~~i~~~  179 (224)
                      ++|+++++.+.+.
T Consensus       177 ~l~~~l~~~i~~~  189 (194)
T 3reg_A          177 EVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=208.97  Aligned_cols=168  Identities=29%  Similarity=0.460  Sum_probs=144.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+|+|.+|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            45789999999999999999999999998888888876665 55555667788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      |+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...++++++...+++++++||++|.|++++|.
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877543 5789999999999987788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          171 TVLTEIYRII  180 (224)
Q Consensus       171 ~i~~~i~~~~  180 (224)
                      +|++.+.+..
T Consensus       180 ~l~~~i~~~~  189 (201)
T 3oes_A          180 KVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhh
Confidence            9999886543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1e-32  Score=209.98  Aligned_cols=170  Identities=23%  Similarity=0.410  Sum_probs=145.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      +.+....+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34556789999999999999999999999998888888877665 45566778889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eE
Q 027382           89 VGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FF  154 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  154 (224)
                      |++|+|||+++++++.. +..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++..+++ +|
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 688999888765 47999999999999653            67889999999999999 89


Q ss_pred             EEEcCCCCCC-HHHHHHHHHHHHHHHH
Q 027382          155 METSALEATN-VETAFLTVLTEIYRII  180 (224)
Q Consensus       155 ~~~s~~~~~~-v~~~~~~i~~~i~~~~  180 (224)
                      +++||++|.| ++++|..+++.+.+..
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccC
Confidence            9999999998 9999999998886543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.5e-32  Score=197.82  Aligned_cols=163  Identities=27%  Similarity=0.375  Sum_probs=123.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997665432 34444444 45667889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++.++++...+++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887654 35799999999999988788899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          174 TEIYRI  179 (224)
Q Consensus       174 ~~i~~~  179 (224)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            887653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-32  Score=205.30  Aligned_cols=169  Identities=27%  Similarity=0.335  Sum_probs=140.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGA   88 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~   88 (224)
                      .....+||+|+|.+|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            4556799999999999999999999974431 22223456677777788889999999999999876 556677788999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      |++|+|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988877643 24799999999999977677888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRI  179 (224)
Q Consensus       168 ~~~~i~~~i~~~  179 (224)
                      +|+++++.+...
T Consensus       193 lf~~l~~~i~~~  204 (211)
T 2g3y_A          193 LFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=4.2e-32  Score=197.94  Aligned_cols=163  Identities=34%  Similarity=0.555  Sum_probs=142.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999888777777765554 3455678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988876654 579999999999998767788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          173 LTEIY  177 (224)
Q Consensus       173 ~~~i~  177 (224)
                      .+.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98775

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=8.1e-32  Score=199.97  Aligned_cols=169  Identities=33%  Similarity=0.517  Sum_probs=148.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999888777777765554 3456678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||+++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999988876654 479999999999998767788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          170 LTVLTEIYRII  180 (224)
Q Consensus       170 ~~i~~~i~~~~  180 (224)
                      ++|.+.+.+..
T Consensus       173 ~~l~~~i~~~~  183 (187)
T 2a9k_A          173 FDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.4e-32  Score=197.86  Aligned_cols=161  Identities=30%  Similarity=0.542  Sum_probs=143.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+. ....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999998887777777665543 5566778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      ||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..+ +.+++++||++|.|++++|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999988877643 357999999999999877778888999999987 7899999999999999999999


Q ss_pred             HHHH
Q 027382          173 LTEI  176 (224)
Q Consensus       173 ~~~i  176 (224)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8776

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.2e-32  Score=208.09  Aligned_cols=170  Identities=30%  Similarity=0.514  Sum_probs=114.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSIDHK--TVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ...++|+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            57799999999999999999999998  666677777776777777777776  89999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEcCCC-CC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQRENLFFMETSALE-AT  163 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~  163 (224)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..++++++++.++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999887665   5899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q 027382          164 NVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~~~~~  182 (224)
                      |++++|+++.+.+.+....
T Consensus       178 gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999988776544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=8.1e-32  Score=202.72  Aligned_cols=171  Identities=27%  Similarity=0.459  Sum_probs=139.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ....+..++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            34567889999999999999999999999887777777766444 45566788889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eE
Q 027382           89 VGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FF  154 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  154 (224)
                      |++|+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+            .+.+..+++..++..+++ ++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999999997 69888877654 799999999999964            356778889999999887 89


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          155 METSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      +++||++|.|++++|+++++.+.+...
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999998876654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.2e-32  Score=196.84  Aligned_cols=163  Identities=30%  Similarity=0.474  Sum_probs=144.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .++|+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5899999999999999999999988877777775543 356677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|+++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999888776543 5799999999999977677888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          174 TEIYR  178 (224)
Q Consensus       174 ~~i~~  178 (224)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87743

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.4e-31  Score=197.63  Aligned_cols=163  Identities=21%  Similarity=0.324  Sum_probs=137.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+||+||++.     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            357999999999999999999999988866 66776644 356677888899999999999875     46788899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGH---ADKNIVIMLIGNKCDLG--SLRAVPTEDAQEFAQRE-NLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~  166 (224)
                      +|||++++++++.+..|+..+...   ...+.|+++|+||+|+.  ..+.+..+++++++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999999976555443   23579999999999993  45678889999999886 6889999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 027382          167 TAFLTVLTEIYRIISK  182 (224)
Q Consensus       167 ~~~~~i~~~i~~~~~~  182 (224)
                      ++|+++++.+.+....
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998776544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=9.5e-33  Score=209.57  Aligned_cols=166  Identities=30%  Similarity=0.529  Sum_probs=142.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999988777778876554 345667788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382           93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR--------AVPTEDAQEFAQRENL-FFMETSALEA  162 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------~~~~~~~~~~~~~~~~-~~~~~s~~~~  162 (224)
                      +|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+.+        .+..+++.+++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999987 79888877654 79999999999986543        2467889999999986 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIYRII  180 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~~~  180 (224)
                      .|++++|+++++.+.+..
T Consensus       165 ~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999998886544

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-31  Score=199.52  Aligned_cols=165  Identities=27%  Similarity=0.446  Sum_probs=145.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +.+..++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            446889999999999999999999999988777777766554 4456677788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027382           91 AMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFME  156 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  156 (224)
                      +|+|||+++++++..+. .|+..+.+... +.|+++|+||+|+.+.            +.+..+++.++++.+++ ++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999997 68888877644 7999999999999753            46778899999999997 8999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +||++|.|++++|+++++.++
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-32  Score=205.29  Aligned_cols=172  Identities=24%  Similarity=0.464  Sum_probs=143.5

Q ss_pred             ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhH
Q 027382            5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAY   84 (224)
Q Consensus         5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~   84 (224)
                      ..+|....+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+
T Consensus        18 ~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   96 (205)
T 1gwn_A           18 GSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLS   96 (205)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGG
T ss_pred             CCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhh
Confidence            345666677899999999999999999999999988877788876555 3456677888999999999999999999999


Q ss_pred             hcCCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN  151 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~  151 (224)
                      ++.+|++|+|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+.+            .+.+..++++++++.++
T Consensus        97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (205)
T 1gwn_A           97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  175 (205)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence            9999999999999999999998 67988887654 3799999999999964            25678888999999987


Q ss_pred             -CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 027382          152 -LFFMETSAL-EATNVETAFLTVLTEIYR  178 (224)
Q Consensus       152 -~~~~~~s~~-~~~~v~~~~~~i~~~i~~  178 (224)
                       ++++++||+ ++.|++++|+.+++.+++
T Consensus       176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          176 AATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence             689999999 689999999999988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=201.22  Aligned_cols=167  Identities=32%  Similarity=0.456  Sum_probs=146.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            35679999999999999999999999988877888766554 45566788899999999999887 77888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAF  169 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~  169 (224)
                      ++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999998887654 3579999999999998767788899999999999999999999999 999999


Q ss_pred             HHHHHHHHHHH
Q 027382          170 LTVLTEIYRII  180 (224)
Q Consensus       170 ~~i~~~i~~~~  180 (224)
                      +++++.+.+..
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999887653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=8.6e-32  Score=199.98  Aligned_cols=165  Identities=25%  Similarity=0.485  Sum_probs=142.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777778866555 34566778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 027382           92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  157 (224)
                      |+|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+.+            .+.+..++++++++.++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888887654 3799999999999964            25678889999999987 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHH
Q 027382          158 SAL-EATNVETAFLTVLTEIYR  178 (224)
Q Consensus       158 s~~-~~~~v~~~~~~i~~~i~~  178 (224)
                      ||+ ++.|++++|+.+++.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999987753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=8.2e-32  Score=205.23  Aligned_cols=172  Identities=29%  Similarity=0.482  Sum_probs=147.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      ..+..+||+|+|.+|||||||+++|+++.+...+.++.+.+......... +..+.+.+||+||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            45678999999999999999999999988877777887777766665553 44489999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999887776679999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 027382          170 LTVLTEIYRIISK  182 (224)
Q Consensus       170 ~~i~~~i~~~~~~  182 (224)
                      .++.+.+.+....
T Consensus       167 ~~l~~~~~~~~~~  179 (218)
T 4djt_A          167 LHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHCCTTC
T ss_pred             HHHHHHHhccccc
Confidence            9999888665443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.1e-31  Score=197.69  Aligned_cols=163  Identities=28%  Similarity=0.490  Sum_probs=143.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999888777777765444 455667889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027382           93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETS  158 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  158 (224)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++.+++..+++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888877654 7999999999998653            46778889999999997 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 027382          159 ALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       159 ~~~~~~v~~~~~~i~~~i~  177 (224)
                      |++|.|++++|+++.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999998774

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=8e-31  Score=197.49  Aligned_cols=165  Identities=27%  Similarity=0.456  Sum_probs=144.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            457899999999999999999999999888777787766654 3466788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      |+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...+. +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 56888777654 37999999999999764            45778889999999988 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ||++|.|++++|+++.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999987753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=3.1e-34  Score=215.84  Aligned_cols=170  Identities=50%  Similarity=0.845  Sum_probs=144.2

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      +....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus        26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~  105 (199)
T 3l0i_B           26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG  105 (199)
T ss_dssp             C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred             cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence            45566789999999999999999999999988887777887888888888888999999999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|+++
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999999999887767899999999999987777777788899999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          168 AFLTVLTEIY  177 (224)
Q Consensus       168 ~~~~i~~~i~  177 (224)
                      +|.+|.+.+.
T Consensus       186 l~~~l~~~l~  195 (199)
T 3l0i_B          186 SFMTMAAEIK  195 (199)
T ss_dssp             HHHHHTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.98  E-value=2.3e-31  Score=202.38  Aligned_cols=166  Identities=31%  Similarity=0.475  Sum_probs=124.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            34679999999999999999999999888777777755443 45567788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      |+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++.++++..++ +++++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999997 6888887654 37999999999999654            36778889999999997 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ||++|.|++++|+++++.+.+.
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999888654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=2.1e-30  Score=193.26  Aligned_cols=168  Identities=34%  Similarity=0.532  Sum_probs=135.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+++|.+|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            34679999999999999999999999887777767655443 35566788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      ++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +....++++++++..+++++++||+++.|++++|+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  175 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY  175 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999888876543 4799999999999976 55678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027382          171 TVLTEIYRIIS  181 (224)
Q Consensus       171 ~i~~~i~~~~~  181 (224)
                      ++.+.+.+...
T Consensus       176 ~l~~~~~~~~~  186 (190)
T 3con_A          176 TLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99998876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.9e-31  Score=193.61  Aligned_cols=162  Identities=30%  Similarity=0.453  Sum_probs=141.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..++|+++|++|||||||+++|.++.+...+.++.+.++. .....++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998887777777665543 445567888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |||++++++++.+..|+..+.+...  .+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999988887776532  47899999999999776777888889999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      +.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=1.8e-30  Score=188.72  Aligned_cols=161  Identities=34%  Similarity=0.572  Sum_probs=141.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .++|+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            57999999999999999999999887777767655433 45566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....++++++++.++++++++|+++|.|++++|.++.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 4799999999999976 55678889999999999999999999999999999999


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.5e-31  Score=200.23  Aligned_cols=168  Identities=21%  Similarity=0.259  Sum_probs=137.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------cCCcceeeEEEEE-EECCeEEEEEEEeCCChhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------KATIGVEFQTKTL-SIDHKTVKAQIWDTAGQERYR   78 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~~   78 (224)
                      ..+..+||+|+|++|||||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4568899999999999999999766653 33332           2343444433333 456778999999999999999


Q ss_pred             hhhHhHhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027382           79 AVTSAYYRGAVGAMLVYDMT------KRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL  152 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~  152 (224)
                      ..+..+++++|++|+|||++      +.+++..+..|+..+.. ...+.|+++|+||+|+.+  .+..+++++++..+++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      56778888888877743 235899999999999975  3678899999999999


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382          153 -FFMETSALEATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       153 -~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                       +++++||++|.|++++|.++.+.+.+...+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999877653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-30  Score=195.62  Aligned_cols=165  Identities=28%  Similarity=0.459  Sum_probs=138.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|.+|||||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            3567899999999999999999999998877777776655543 366788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      |+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...++ +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            999999999999998 56888877654 37999999999999654            45778888999999988 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ||++|.|++++|++|.+.+.+
T Consensus       180 SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHS
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.8e-30  Score=193.25  Aligned_cols=167  Identities=27%  Similarity=0.366  Sum_probs=137.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCCC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNE--FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGAV   89 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d   89 (224)
                      ...+||+++|++|||||||+++|.+..  +...+ ++.+.++....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999643  22333 3356666677778889999999999999776 5567788889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      ++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988777643 357999999999999766777888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          169 FLTVLTEIYRII  180 (224)
Q Consensus       169 ~~~i~~~i~~~~  180 (224)
                      |.++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999998886543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.5e-29  Score=190.28  Aligned_cols=171  Identities=68%  Similarity=1.118  Sum_probs=151.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999999888888888888888888888999999999999999999889999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      +|+|+++..++..+..|+..+......+.|+++++||+|+.+.+.+..++++.++...++.++++|++++.|++++|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988889887766554578999999999997767777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 027382          173 LTEIYRIISKK  183 (224)
Q Consensus       173 ~~~i~~~~~~~  183 (224)
                      .+.+.+.....
T Consensus       163 ~~~~~~~~~~~  173 (199)
T 2f9l_A          163 LTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhc
Confidence            99998765443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=3.4e-31  Score=202.36  Aligned_cols=169  Identities=30%  Similarity=0.530  Sum_probs=149.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      +......+||+|+|.+|||||||+++|+.+.+...+.++.+.++......+++..+.+.+||+||++.+..++..+++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            44566889999999999999999999887777777788888999988888999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      |++|+|||++++.++..+..|+..+.+... +.|+++|+||+|+.+...  ..+...++...+++++++||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887654 799999999999975433  23567788888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          169 FLTVLTEIYRII  180 (224)
Q Consensus       169 ~~~i~~~i~~~~  180 (224)
                      |.++.+.+....
T Consensus       166 ~~~l~~~l~~~~  177 (221)
T 3gj0_A          166 FLWLARKLIGDP  177 (221)
T ss_dssp             HHHHHHHHHTCT
T ss_pred             HHHHHHHHHhCc
Confidence            999998886543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.5e-30  Score=196.57  Aligned_cols=163  Identities=27%  Similarity=0.467  Sum_probs=138.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|.+|||||||+++|.++.+...+.++.+ ......+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999888777777754 44455666788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..+++..++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999997 6888887765 479999999999986532            3678889999999886 59999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEI  176 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i  176 (224)
                      ||++|.|++++|+++++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.9e-31  Score=197.39  Aligned_cols=163  Identities=29%  Similarity=0.519  Sum_probs=125.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|+|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45789999999999999999999998877777676554432 22334566788899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEcCC
Q 027382           93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRA----------VPTEDAQEFAQRENL-FFMETSAL  160 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~  160 (224)
                      +|||++++++++.+. .|+..+..... +.|+++|+||+|+.+.+.          +..+++.+++..+++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999997 68888877654 799999999999865432          467888999999996 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTEIY  177 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i~  177 (224)
                      +|.|++++|+++++.++
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=1.5e-30  Score=195.21  Aligned_cols=166  Identities=17%  Similarity=0.302  Sum_probs=130.9

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      ..+.....+|+|+|.+|||||||+++|++..+.. .+.++.+.....    ++...+.+.+|||||++.+..++..+++.
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            3467789999999999999999999999999877 677877744432    33566889999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--------CCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCe
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD--------KNIVIMLIGNKCDLGSLRAVPTEDAQEF------AQRENLF  153 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ilv~nK~D~~~~~~~~~~~~~~~------~~~~~~~  153 (224)
                      +|++|+|||+++++++..+..|+..+.+...        .+.|+++|+||+|+.+..  ..+++.+.      ++..+++
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence            9999999999999999999999888765421        278999999999997543  23333222      1446678


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ++++||++|.|++++|++|.+.+.+..
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=3.9e-29  Score=185.74  Aligned_cols=160  Identities=23%  Similarity=0.342  Sum_probs=130.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..++|+++|++|||||||++++.++. ...+.++.+...  ..+.+  ..+.+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            578999999999999999999999888 666777766443  33434  3578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  166 (224)
                      +|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999888776543 2579999999999997532  3444444332     245679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRI  179 (224)
Q Consensus       167 ~~~~~i~~~i~~~  179 (224)
                      ++|+++.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1e-28  Score=184.58  Aligned_cols=169  Identities=66%  Similarity=1.080  Sum_probs=150.7

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG   87 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   87 (224)
                      ..++.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.
T Consensus        22 ~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~  101 (191)
T 1oix_A           22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG  101 (191)
T ss_dssp             --CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence            34556788999999999999999999999999888888998888888888899999999999999999888889999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      ++++++|+|.++..+++.+..|+..+......+.|+++++||.|+.+.+....++++.++...++.++++|++++.|+++
T Consensus       102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999998888888877665555789999999999977667778889999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.2e-29  Score=186.62  Aligned_cols=168  Identities=21%  Similarity=0.330  Sum_probs=130.2

Q ss_pred             cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382            4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA   83 (224)
Q Consensus         4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   83 (224)
                      .++.+....+..++|+++|++|||||||+++|.+..+ ..+.++.+.+.  ..+.++  .+.+.+||+||++.+...+..
T Consensus         5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~   79 (181)
T 1fzq_A            5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRS   79 (181)
T ss_dssp             HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHH
T ss_pred             HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHH
Confidence            3444555556789999999999999999999998754 34455656432  334444  578999999999999999999


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEE
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMET  157 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (224)
                      +++.+|++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+..  ..+++.+...     ..+++++++
T Consensus        80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
T 1fzq_A           80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSC  157 (181)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEc
Confidence            9999999999999999999999999887775542 3579999999999997533  3344433321     234579999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ||++|.|++++|+++.+.+.+
T Consensus       158 Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          158 SALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CTTTCTTHHHHHHHHHHTC--
T ss_pred             cCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999877643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=5.4e-29  Score=185.71  Aligned_cols=162  Identities=21%  Similarity=0.338  Sum_probs=129.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC-CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNE-FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      .....++|+|+|.+|||||||+++|.+.. +...+.++.+.  ....+.++  .+.+.+||+||++.+...+..+++.+|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34578999999999999999999999887 45556666553  33344443  478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCC
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALE  161 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~  161 (224)
                      ++|+|||+++++++..+..|+..+.+...   .+.|+++|+||+|+.+  ....+++.++..     ..+++++++||++
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999999888776543   4799999999999964  345666776664     2356799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIYR  178 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~  178 (224)
                      |.|++++|++|.+.+.+
T Consensus       171 ~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999887643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.3e-29  Score=186.71  Aligned_cols=160  Identities=21%  Similarity=0.368  Sum_probs=130.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+|+|.+|||||||+++|.+..+...+.++.+.++..    +....+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            4568999999999999999999999988877777877766543    233467899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNV  165 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v  165 (224)
                      |+|||+++++++..+..|+..+.+.. ..+.|+++|+||+|+.+.  ....++.+...     ..+++++++||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999999988776543 257999999999999653  23333333222     23457999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIY  177 (224)
Q Consensus       166 ~~~~~~i~~~i~  177 (224)
                      +++|+++.+.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=5.1e-29  Score=186.09  Aligned_cols=156  Identities=21%  Similarity=0.267  Sum_probs=127.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|++|||||||++++.++.+. .+.++.+.+  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45679999999999999999999998764 455665554  34445554  88999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcC
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------------ENLFFMETSA  159 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  159 (224)
                      +|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+  .+..+++.+++..            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988876543 25799999999999975  4567777776543            3457999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027382          160 LEATNVETAFLTVLTE  175 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~  175 (224)
                      ++|.|++++|+++.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.8e-30  Score=187.23  Aligned_cols=156  Identities=19%  Similarity=0.382  Sum_probs=122.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.++.+.. +.++.+..  ...+  ....+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 45665532  2233  335578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAF  169 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ....++.+...     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999988776542 357999999999999653  23333333221     134579999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          170 LTVLTEIYR  178 (224)
Q Consensus       170 ~~i~~~i~~  178 (224)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=3e-29  Score=188.53  Aligned_cols=156  Identities=21%  Similarity=0.255  Sum_probs=122.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|++|||||||+++|.++.+. .+.++.+.+.  ..+.+++  +.+.+|||||++.++..+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34579999999999999999999987764 4556655543  3444544  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----------------ENLFF  154 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (224)
                      +|||+++++++..+..|+..+.+.. ..+.|+++|+||+|+..  .+..+++++++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999998876643 35799999999999974  5667888887653                 23579


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTE  175 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      +++||++|.|++++|+++.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.3e-29  Score=185.57  Aligned_cols=159  Identities=19%  Similarity=0.330  Sum_probs=126.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|++|||||||+++|.++.+. .+.++.+...  ..+.+.  .+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            35689999999999999999999988764 3555655433  333343  678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  166 (224)
                      +|||+++++++..+..|+..+..... .+.|+++|+||+|+.+..  ...++.+..     ...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            99999999999999998877765432 579999999999997533  233333322     2345679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYR  178 (224)
Q Consensus       167 ~~~~~i~~~i~~  178 (224)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.6e-28  Score=182.69  Aligned_cols=157  Identities=21%  Similarity=0.380  Sum_probs=125.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...++|+++|.+|||||||+++|.++.+. .+.++.+.+..  .+.++  .+.+.+||+||++.+...+..+++++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            56799999999999999999999988775 55666654433  33343  488999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  166 (224)
                      +|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+  ....+++.+...     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887653 24799999999999974  334555555543     235689999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|+++++.+
T Consensus       167 ~l~~~l~~~~  176 (187)
T 1zj6_A          167 QGLEWMMSRL  176 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998776

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=4.7e-29  Score=184.69  Aligned_cols=160  Identities=21%  Similarity=0.368  Sum_probs=125.9

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      .......+||+|+|.+|||||||+++|.+..+ ..+.++.+....  .+.++  .+.+.+||+||++.+...+..+++.+
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEET--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence            34556789999999999999999999999887 455566664443  33343  37899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEA  162 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~  162 (224)
                      |++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+  ....+++.+...     ..+++++++||++|
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999999999888776543 35799999999999964  234555555442     23457999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTE  175 (224)
Q Consensus       163 ~~v~~~~~~i~~~  175 (224)
                      .|++++|++|++.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=7.2e-30  Score=189.69  Aligned_cols=163  Identities=20%  Similarity=0.397  Sum_probs=121.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSI---DHKTVKAQIWDTAGQERYRAVTSAYYRGAV   89 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   89 (224)
                      .+||+++|++|||||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+||++|++.+..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444556777777766655443   235778999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEcCCC
Q 027382           90 GAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP---TEDAQEFAQRENLF----FMETSALE  161 (224)
Q Consensus        90 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  161 (224)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+.   .+..++++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 57899999998887654 378999999999996533221   22345566667776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027382          162 AT-NVETAFLTVLTEIYR  178 (224)
Q Consensus       162 ~~-~v~~~~~~i~~~i~~  178 (224)
                      +. +++++++.+.+.+.+
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            97 899999888876654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=1.8e-29  Score=188.89  Aligned_cols=158  Identities=20%  Similarity=0.382  Sum_probs=120.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+|+|++|||||||+++|.++.+. .+.+|.+.  ....+..  ..+.+.+||+||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999987764 34555552  2233333  4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  166 (224)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999999988776543 257999999999999653  23333333221     134569999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++|+++++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987663

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=6.4e-29  Score=183.94  Aligned_cols=160  Identities=20%  Similarity=0.354  Sum_probs=126.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..++|+++|++|||||||++++.++.+ ..+.++.+...  ..+.++  .+.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998776 45566666443  333343  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~  166 (224)
                      +|+|++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.  ...+++.+....     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988887654 357999999999999653  345555554432     23479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRI  179 (224)
Q Consensus       167 ~~~~~i~~~i~~~  179 (224)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.4e-31  Score=200.67  Aligned_cols=163  Identities=28%  Similarity=0.486  Sum_probs=137.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35789999999999999999999998887766666654433 34455667778899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      ++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+..            .+..+++.++++..++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999887 68877766543 79999999999996532            4556677888888887 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEI  176 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i  176 (224)
                      ||++|.|++++|+.+++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999988765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=6.7e-28  Score=194.49  Aligned_cols=164  Identities=27%  Similarity=0.478  Sum_probs=143.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  230 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  230 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence            45669999999999999999999999888777777765444 45566788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382           92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (224)
                      ++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++.++++..++ +++++
T Consensus       231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          231 LICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 68888776554 7999999999998543            56788899999999997 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ||++|.|++++|+.+++.++
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999998775

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1.1e-29  Score=189.21  Aligned_cols=159  Identities=19%  Similarity=0.323  Sum_probs=126.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..+||+++|++|||||||+++|.++.+. .+.++.+...  ..+..  ..+.+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            56799999999999999999999887764 3556655433  33334  3578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  166 (224)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ...++.+..     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999998887776543 2579999999999996532  233333322     2234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYR  178 (224)
Q Consensus       167 ~~~~~i~~~i~~  178 (224)
                      ++|+++.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.2e-28  Score=184.87  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=121.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE--EEEEEE-CCeEEEEEEEeCCChhhhhhhh---H
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ--TKTLSI-DHKTVKAQIWDTAGQERYRAVT---S   82 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~D~~G~~~~~~~~---~   82 (224)
                      ..+.+..+||+++|++|||||||++++.+.... .  ++.+.+..  .....+ ++..+.+.+||+||++.+....   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            345678899999999999999999988875332 2  22233222  222233 2566899999999999887766   8


Q ss_pred             hHhcCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-------CCCCCHHHHHHHHH----H
Q 027382           83 AYYRGAVGAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS-------LRAVPTEDAQEFAQ----R  149 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------~~~~~~~~~~~~~~----~  149 (224)
                      .+++.+|++|+|||++++  +++..+..|+..+.... .+.|+++|+||+|+.+       .+.+...+.++++.    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            999999999999999997  77777777877765433 4799999999999754       12344455677777    6


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          150 ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .+++|+++||++ .|++++|..+++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            778999999999 99999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1.1e-27  Score=181.85  Aligned_cols=160  Identities=16%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhHhHhcCC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQERYRA-VTSAYYRGA   88 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~~~   88 (224)
                      .....+||+++|++|||||||+++|.+..+...+.++ +.....  +.+++. .+.+.+|||||++.+.. ++..+++.+
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            3456799999999999999999999998876666543 333333  445443 68899999999999987 788899999


Q ss_pred             CEEEEEEeCCChh-hHHHHHHHH-HHHHh--cCCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH------------
Q 027382           89 VGAMLVYDMTKRQ-SFDHMARWL-DELRG--HADKNIVIMLIGNKCDLGSLRAVPTEDAQE----FAQ------------  148 (224)
Q Consensus        89 d~vi~v~d~~~~~-s~~~~~~~~-~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~------------  148 (224)
                      |++|+|||+++.. ++.....++ ..+..  ....+.|+++|+||+|+.+...  .++..+    ...            
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~  157 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPST  157 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC-----
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhcccc
Confidence            9999999999854 455555544 33333  1234799999999999975433  222211    111            


Q ss_pred             ---------------------Hc--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 027382          149 ---------------------RE--NLFFMETSALEA------TNVETAFLTVLTE  175 (224)
Q Consensus       149 ---------------------~~--~~~~~~~s~~~~------~~v~~~~~~i~~~  175 (224)
                                           ..  +++|++|||++|      .|++++|++|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                 11  567999999999      9999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.2e-26  Score=177.99  Aligned_cols=170  Identities=18%  Similarity=0.163  Sum_probs=120.7

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh------hhh---hh
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ------ERY---RA   79 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~------~~~---~~   79 (224)
                      +.-.+..++|+|+|.+|||||||+++|++..+.....+....+........  ....+.+|||||.      +..   ..
T Consensus        23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHH
Confidence            333456799999999999999999999998765333222222222222222  3367999999998      321   12


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--C
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE---DAQEFAQREN--L  152 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~--~  152 (224)
                      .+..++..+|++|+|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+.+.+...   .+++++...+  +
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI  179 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence            2345578899999999999987754  2345666665532 37999999999999776666554   4667777777  7


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          153 FFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       153 ~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      +++++||++|.|++++|++|.+.+.+...
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          180 KFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998876643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=4e-27  Score=171.82  Aligned_cols=153  Identities=16%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc--
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR--   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--   86 (224)
                      .++|+++|++|||||||+++|.+......+.++.+.+.....+.+++  ..+.+|||||+..+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998776555545444444444454543  579999999987653      34455664  


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++++|+|+++.+.   ...|+..+.+.   +.|+++|+||+|+...+.+.. ++++++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998554   34466666542   689999999999854333332 4677888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-28  Score=191.09  Aligned_cols=165  Identities=28%  Similarity=0.423  Sum_probs=120.8

Q ss_pred             cccceeEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccCCc-ceeeEEEE--------------EEECCe
Q 027382           10 QKIDYVFKVVLIGDS---------AVGKSQLLARFAR---NEFSVDSKATI-GVEFQTKT--------------LSIDHK   62 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~   62 (224)
                      ......+||+|+|.+         |||||||+++|.+   ..+...+.++. +.++....              ..+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345678999999999         9999999999998   44545555543 22222111              113567


Q ss_pred             EEEEEEEe-----------------------CCChhhhhhhhHhHhc---------------------CCCEEEEEEeCC
Q 027382           63 TVKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GAVGAMLVYDMT   98 (224)
Q Consensus        63 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d~~   98 (224)
                      .+.+.+||                       ++|++.+..++..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       5556666666666666                     799999999999


Q ss_pred             Ch--hhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           99 KR--QSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        99 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ++  ++++.+..|+..+.+. ...++|+++|+||+|+.+.+.+  +++++++.. .+++++++||++|.|++++|++|++
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999888765 2347999999999999643332  567788876 4789999999999999999999987


Q ss_pred             HH
Q 027382          175 EI  176 (224)
Q Consensus       175 ~i  176 (224)
                      .+
T Consensus       252 ~l  253 (255)
T 3c5h_A          252 LI  253 (255)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=1.9e-26  Score=184.24  Aligned_cols=159  Identities=19%  Similarity=0.273  Sum_probs=125.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhHhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-----RAVTSAYY   85 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~   85 (224)
                      ..+||+++|.+|||||||+++++++...   ..+.+|.+.....  ..+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987432   2344555544443  33433 688999999999988     67889999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGS--LRA----VPTEDAQEFAQREN---LFF  154 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  154 (224)
                      +++|++|+|||++++++++.+..|...+....  ..++|+++|+||+|+.+  .+.    +..+++++++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999998877755544322  34799999999999975  332    44577888999887   689


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +++||++ .++.++|..++..+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 89999998887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=2.5e-26  Score=169.15  Aligned_cols=159  Identities=15%  Similarity=0.156  Sum_probs=119.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..++|+++|++|||||||+++|.+..+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999888776666655555555555655  4567999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCCC
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALEA  162 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~  162 (224)
                      ++|+|++++..... .+++..+..   .+.|+++|+||+|+.+.   ..++........+         ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~-~~~l~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQT-VEAINHAKA---ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHH-HHHHHHHGG---GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHH-HHHHHHHHh---CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999988322221 122222322   36899999999999652   3344444433322         47999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIYRI  179 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~~  179 (224)
                      .|++++|+++++.+...
T Consensus       156 ~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhhhh
Confidence            99999999998776543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=186.05  Aligned_cols=157  Identities=19%  Similarity=0.358  Sum_probs=119.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+|+|.+|||||||+++|.+..+... .+|.+.....    +....+.+.+|||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999998876433 3454444332    33355789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET  167 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~  167 (224)
                      |||+++++++..+..|+..+.... ..++|+++|+||+|+.+..  ..+++......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999988877665543 3579999999999997533  33444333322     235699999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          168 AFLTVLTEIY  177 (224)
Q Consensus       168 ~~~~i~~~i~  177 (224)
                      +|+.|++.+.
T Consensus       317 l~~~l~~~l~  326 (329)
T 3o47_A          317 GLDWLSNQLR  326 (329)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.6e-26  Score=170.84  Aligned_cols=159  Identities=15%  Similarity=0.162  Sum_probs=110.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      +.+..++|+|+|.+|||||||+++|++..+...+.++.+.+.......++.   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            345789999999999999999999999875555555555555555444543   589999999          7888888


Q ss_pred             hHhHhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeE
Q 027382           81 TSAYYRGA---VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT--EDAQE-FAQRENLFF  154 (224)
Q Consensus        81 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~  154 (224)
                      +..+++.+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+...+..  +++.+ +....+.++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88888777   9999999999876665432 2222332   3689999999999975443221  22222 222345789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +++||++|.|++++|+++.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=2.1e-26  Score=171.31  Aligned_cols=156  Identities=19%  Similarity=0.199  Sum_probs=116.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhHhH
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-----------QERYRAVTSAY   84 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~   84 (224)
                      +||+++|++|||||||+++|.+..+...+.++.+  .......+.    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887766665433  333333333    689999999           77788888888


Q ss_pred             hcC-CCEEEEEEeCCChhhHHHH-HHHHHH---------HHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382           85 YRG-AVGAMLVYDMTKRQSFDHM-ARWLDE---------LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF  153 (224)
Q Consensus        85 ~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (224)
                      ++. ++++++|+++.+..++..+ ..|...         +......+.|+++|+||+|+.+..   .+++++++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6666666666666666655 445431         111122479999999999997533   56788888888864


Q ss_pred             -------EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          154 -------FMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       154 -------~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                             ++++||++|.|++++|+++.+.+.+..
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                   799999999999999999998886544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.9e-27  Score=189.05  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh---hhHhHhcCCCE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSV---DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA---VTSAYYRGAVG   90 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~   90 (224)
                      ||+++|+.|||||||++++.++..+.   .+.+|.|.++..    ++ ..+.+++|||+|++++..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988664432   245666666653    22 348899999999999864   46899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 027382           91 AMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL-------RAVPTEDAQEFAQR----ENLFFMET  157 (224)
Q Consensus        91 vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  157 (224)
                      +|+|||++++  +....+.+|+..+.+.. +++|+++++||+|+..+       +.+..++++++++.    +++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  34444444555554433 47999999999999653       23555566777775    67899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ||++ .++.++|..+++.+.+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999998876544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=7.9e-26  Score=168.02  Aligned_cols=157  Identities=16%  Similarity=0.176  Sum_probs=120.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc-
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR-   86 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-   86 (224)
                      ..++|+++|++|||||||+++|.+......+.++.+.+.....+..+  ...+.+|||||+..+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            56899999999999999999999876655555554445555555554  4789999999987663      34556664 


Q ss_pred             -CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           87 -GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        87 -~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                       .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...+.+. .+++++++..+++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999976   4455567666654   368999999999986444333 3577888888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYRI  179 (224)
Q Consensus       166 ~~~~~~i~~~i~~~  179 (224)
                      +++|+++++.+.+.
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=1.7e-25  Score=161.90  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~   87 (224)
                      .||+++|++|+|||||+++|.+.... ....++.+.+.....+..++  ..+.+||+||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988753 22223323344444454544  3788999999876       45567778899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  166 (224)
                      +|++++|+|++++.+... ..+...+.+   .+.|+++|+||+|+.+.    .+++.+++ +.++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998533321 112222222   26899999999999653    23445555 6677 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=5.8e-26  Score=166.83  Aligned_cols=153  Identities=22%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----h--h--hHhH
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----A--V--TSAY   84 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~--~--~~~~   84 (224)
                      ..++|+++|.+|||||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...+.    .  .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987643 22233334445555566655  357899999975321    1  1  1245


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN  164 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (224)
                      ++.+|++++|||++++.++. ...|+..+.+....++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999987765 34677777665555799999999999853211       11223466899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      ++++|+++.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3.7e-25  Score=172.54  Aligned_cols=155  Identities=18%  Similarity=0.128  Sum_probs=117.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHh-
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYY-   85 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~-   85 (224)
                      ...++|+++|.+|||||||+|+|.+........+.  .++......+......+.+||+||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg--~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPG--VTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTT--SCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--ceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            46789999999999999999999998765444443  344444433433457899999999876643      234555 


Q ss_pred             -cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382           86 -RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN  164 (224)
Q Consensus        86 -~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (224)
                       ..+|++++|+|+++.++..   .|...+.+   .+.|+++++||+|+.+.+.+. .+.+++++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999865543   34444444   269999999999986544443 247788888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      ++++|+.+.+.+
T Consensus       154 i~el~~~i~~~~  165 (258)
T 3a1s_A          154 LEELKEKIVEYA  165 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=5.7e-25  Score=175.77  Aligned_cols=163  Identities=18%  Similarity=0.127  Sum_probs=124.8

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhh----------hh
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQER----------YR   78 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~----------~~   78 (224)
                      .+++..-.|+++|.+|||||||+|+|++..+......+ +.+.......+... ...+.+|||||...          +.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~-~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA-GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-CCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC-CceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            35678889999999999999999999998875332222 22222222223233 67899999999743          34


Q ss_pred             hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEE
Q 027382           79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFME  156 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (224)
                      .....+++.+|++++|+|++++.+......|+..+...   +.|+++|+||+|+..........+.++....+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            66778889999999999999988888777777777653   68999999999997434455667778888875  67999


Q ss_pred             EcCCCCCCHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +||++|.|++++|+.+.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHS
T ss_pred             EeCCCCCCHHHHHHHHHHhC
Confidence            99999999999999988766

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=5.1e-26  Score=194.58  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=124.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEE--------EECCeEEEEEEEeCCChhhhhhhhHh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL--------SIDHKTVKAQIWDTAGQERYRAVTSA   83 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~D~~G~~~~~~~~~~   83 (224)
                      ....+||+++|.+|||||||+++|.+..+...+.++.+.++.....        ..++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4577999999999999999999999998887777887777665421        11234688999999999999999999


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      +++.+|++|+|+|+++.   +....|+..+..... +.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999999875   445667777766543 68999999999998777788888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYR  178 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~  178 (224)
                      |++++|..+.+.+.+
T Consensus       194 gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          194 GVESIAKSLKSAVLH  208 (535)
T ss_dssp             -CTTHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999887754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2.2e-25  Score=174.93  Aligned_cols=153  Identities=19%  Similarity=0.185  Sum_probs=116.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc-
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR-   86 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-   86 (224)
                      ..++|+++|.+|||||||+|+|.+........+  |.++......+.. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998765444444  4445445555665 6789999999987664      45566665 


Q ss_pred             -CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           87 -GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        87 -~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                       .+|++++|+|+++.+..   ..|...+.+   .+.|+++++||+|+...+.+. .+...++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986544   344444444   379999999999986433333 3567888888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          166 ETAFLTVLTEI  176 (224)
Q Consensus       166 ~~~~~~i~~~i  176 (224)
                      +++|+.+.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=9.5e-25  Score=162.82  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=114.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      +....++|+|+|++|||||||+++|++... ..+.++.+.+........+.   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            345678999999999999999999999874 33344445554444433333   477999999          7778888


Q ss_pred             hHhHhcCC---CEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC-C
Q 027382           81 TSAYYRGA---VGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN-L  152 (224)
Q Consensus        81 ~~~~~~~~---d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~-~  152 (224)
                      +..+++.+   |++++|+|+++..+  ...+..|+...      +.|+++|+||+|+.+...  ...+++++++...+ +
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            88888766   99999999987533  33333443322      689999999999864322  22345566666644 6


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          153 FFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       153 ~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +++++||++|.|++++|+++.+.+.
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=3.8e-25  Score=172.28  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=114.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhHh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA----------VTSAYY   85 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~   85 (224)
                      .+|+++|.+|||||||+|+|.+........++.+.+.....+..++  ..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3799999999999999999999876655556555555555555544  4899999999765543          556666


Q ss_pred             --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           86 --RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        86 --~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                        ..+|++|+|+|+++.+....+..+   +.+   .+.|+++|+||+|+.+.+... .....+....+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986655444333   332   369999999999985433322 23566778889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTE  175 (224)
Q Consensus       164 ~v~~~~~~i~~~  175 (224)
                      |++++|+.+.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.5e-24  Score=165.51  Aligned_cols=164  Identities=17%  Similarity=0.177  Sum_probs=112.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCC----------hhhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      ....++|+|+|.+|+|||||+++|++...........+.+.......+. .....+.+|||||          ++.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4567899999999999999999999986322222222344444444444 4557899999999          4555666


Q ss_pred             hHhHhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH------
Q 027382           81 TSAYYRG---AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR------  149 (224)
Q Consensus        81 ~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~------  149 (224)
                      +..++..   +|++++|+|++++.+ .....++..+..   .+.|+++|+||+|+.+....  ..+++.+....      
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            6677665   788999999987433 222344555544   36899999999998642221  11222233333      


Q ss_pred             -cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          150 -ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       150 -~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                       .+.+++++||++|.|++++|++|.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             456799999999999999999998877443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=4.6e-24  Score=167.71  Aligned_cols=155  Identities=18%  Similarity=0.124  Sum_probs=116.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHh--c
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYY--R   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~   86 (224)
                      .++|+++|++|||||||+++|.+........++.+.+.....+...+  ..+.+||+||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            57999999999999999999999877555666655555555555544  4599999999776654      455666  6


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      .+|++++|+|+++.+.   ...|...+.+..  ..|+++|+||+|+.+.+.... +...+.+..+++++++|+++|.|++
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999998532   233333333331  289999999999753222222 2677888889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++|..+.+.+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=2.6e-24  Score=177.82  Aligned_cols=189  Identities=17%  Similarity=0.140  Sum_probs=135.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-------hH
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-------TS   82 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~   82 (224)
                      +....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+.+... ..+.+|||||++.+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            4567899999999999999999999988763 222333234444445555433 27899999998766543       45


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      .++..+|++|+|+|+...+   ....|+..+.+.   ++|+++|+||+|+.+....  +..+++...++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            6889999999999994333   335566666654   6899999999999765543  5667777778899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCC
Q 027382          163 TNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASK  217 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (224)
                      .|++++|+.+.+.+.        .. .+..+.+....+++..++..+.+....+.
T Consensus       181 ~gI~eL~~~L~~~l~--------~~-~e~~l~~dLv~~gd~v~lv~pid~~~pkg  226 (423)
T 3qq5_A          181 KGFDDIGKTISEILP--------GD-EEIPYLGDLIDGGDLVILVVPIDLGAPKG  226 (423)
T ss_dssp             TSTTTHHHHHHHHSC--------CC-CCCCSCSCCCCTTCCEEEECCCSCCSSTT
T ss_pred             CCHHHHHHHHHHhhh--------hh-ccCcchhhccccCceEEEEeeccccCcCC
Confidence            999999999887662        12 45566777788888888888887766544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.4e-25  Score=167.92  Aligned_cols=144  Identities=18%  Similarity=0.265  Sum_probs=106.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC-
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG-   87 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-   87 (224)
                      ....++|+++|++|+|||||+++|.+..+...   +.++.+.         ....+.+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            55789999999999999999999999876432   2232221         2245678999999999998888888877 


Q ss_pred             ---CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCe
Q 027382           88 ---AVGAMLVYDMT-KRQSFDHMARWLDELRGH----ADKNIVIMLIGNKCDLGSLRAVP------TEDAQEFAQRENLF  153 (224)
Q Consensus        88 ---~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  153 (224)
                         +|++|+|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.+...+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888988888888776554    33579999999999997655433      34566777777788


Q ss_pred             EEEEcCCCCCC
Q 027382          154 FMETSALEATN  164 (224)
Q Consensus       154 ~~~~s~~~~~~  164 (224)
                      ++++|+++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.5e-24  Score=170.69  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhHhH
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----------AVTSAY   84 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~   84 (224)
                      .++|+++|.+|||||||+|+|.+........+..+.+.....+..  ....+.+|||||...+.          .....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            589999999999999999999998765555554444444444444  34568899999976654          223333


Q ss_pred             h--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382           85 Y--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA  162 (224)
Q Consensus        85 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (224)
                      +  ..+|++++|+|+++.+....+..++.   +.   ++|+++|+||+|+.+..... ...+.+.+..+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  79999999999998665544444433   32   69999999999985433321 2356778888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEI  176 (224)
Q Consensus       163 ~~v~~~~~~i~~~i  176 (224)
                      .|++++|+.+.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999998887544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=2.2e-23  Score=174.11  Aligned_cols=161  Identities=19%  Similarity=0.185  Sum_probs=114.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAVT   81 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   81 (224)
                      +..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            46799999999999999999999987754 233333233333334444443  5899999997          4454443


Q ss_pred             H-hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-HHH----cCCeEE
Q 027382           82 S-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-AQR----ENLFFM  155 (224)
Q Consensus        82 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~~  155 (224)
                      . .+++.+|++++|+|++++.+.... .|+..+.+   .+.|+++|+||+|+.+......++..+. ...    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999997777654 46666554   3699999999999976555444444332 222    367899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          156 ETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       156 ~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ++||++|.|++++|..+.+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998777554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.3e-22  Score=165.35  Aligned_cols=163  Identities=17%  Similarity=0.214  Sum_probs=120.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR---------AVTSA   83 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~   83 (224)
                      ...++|+++|.+|||||||+++|.+........+..+.......+..  ....+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            56789999999999999999999987743332232222222222222  24678999999964321         22234


Q ss_pred             HhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE  161 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (224)
                      +...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.+...  .+++.+++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            456799999999998876  67777888888776544 799999999999964322  2456667777888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~~~  180 (224)
                      |+|++++|+++.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999998886543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=4.3e-23  Score=173.23  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=119.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV   80 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   80 (224)
                      .+..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            356799999999999999999999976532 233333233333344445443  789999999          6666665


Q ss_pred             hH-hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027382           81 TS-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-----NLFF  154 (224)
Q Consensus        81 ~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  154 (224)
                      .. .+++.+|++++|+|++++.. +....|+..+.+   .+.|+++|+||+|+.+.+....+++.+.+.+.     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            54 47899999999999987433 223445555544   36999999999999876767677777777664     5789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      +++||++|.|++++|..+.+.+.+..
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998775543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=2.4e-23  Score=165.62  Aligned_cols=155  Identities=17%  Similarity=0.164  Sum_probs=107.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSA   83 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~   83 (224)
                      -...+|+++|.+|||||||+|+|++..+... ..+.  ++.......+......+.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~--tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCC--ceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            3456799999999999999999999877532 2222  111111111223467899999999654        4556677


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-C-CeEEEEcCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-N-LFFMETSAL  160 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~  160 (224)
                      +++.+|++++|+|++++.+..  ..|+ ..+.+.. .+.|+++|+||+|+.....    ++.+.+..+ + .+++++||+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence            889999999999998754433  2333 4455432 3689999999999864221    123333332 3 468999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027382          161 EATNVETAFLTVLTEI  176 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i  176 (224)
                      +|.|++++|+.+...+
T Consensus       156 ~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          156 DERQVAELKADLLALM  171 (301)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999887654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=3e-23  Score=174.12  Aligned_cols=158  Identities=16%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------Hh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT--------SA   83 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~   83 (224)
                      +..++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  +.+.+|||||...+...+        ..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            35689999999999999999999987532 33333333444444455544  579999999987655433        34


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      +++.+|++++|+|++++.++..+..+...+....  +.|+++|+||+|+.+....   ..+++......+++++||++|.
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~  383 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD  383 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence            6789999999999999777653333333333332  6999999999999754332   2234444434689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIY  177 (224)
Q Consensus       164 ~v~~~~~~i~~~i~  177 (224)
                      |++++|+++.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999987764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=9.1e-22  Score=151.82  Aligned_cols=162  Identities=14%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce--eeEEEEEEECCeEEEEEEEeCCC-----------hhhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV--EFQTKTLSIDHKTVKAQIWDTAG-----------QERY   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~   77 (224)
                      +....++|+|+|.+|||||||+|+|++........++.+.  ........+  ....+.+|||||           ...+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW--KETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE--TTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe--CCceEEEEECCCccCCCCCHHHHHHHH
Confidence            4567899999999999999999999998876555443223  333333334  345789999999           3345


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP------TEDAQEFAQR  149 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~  149 (224)
                      ...+...++.+|++|+|+|++....  ...+..+...+...  ...|+++|+||+|+.+...+.      .+.+++++.+
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            5556666778999999999875332  22222333323221  136899999999986543322      2457888888


Q ss_pred             cCCeEEEEcCCCC-----CCHHHHHHHHHHHH
Q 027382          150 ENLFFMETSALEA-----TNVETAFLTVLTEI  176 (224)
Q Consensus       150 ~~~~~~~~s~~~~-----~~v~~~~~~i~~~i  176 (224)
                      .+..++.++...+     .++.++|..+...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            8888888877644     57777777766554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.7e-22  Score=163.01  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=115.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhHh---cCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----YRAVTSAYY---RGA   88 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~~---~~~   88 (224)
                      .+|+|+|.++||||||+++|++........+..+.......+.+.. ...+.+||+||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            3689999999999999999998764332222222222222333332 25789999999643    222334444   459


Q ss_pred             CEEEEEEeCCC---hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 027382           89 VGAMLVYDMTK---RQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALE  161 (224)
Q Consensus        89 d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~  161 (224)
                      |++|+|+|+++   +++++.+..|+..+.....  .+.|+++|+||+|+.+.    .+.++++...+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889988889888887643  47999999999998641    245667777766  6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIY  177 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~  177 (224)
                      +.|++++|.+|.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          314 REGLRELLFEVANQLE  329 (342)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=1.8e-21  Score=161.05  Aligned_cols=163  Identities=16%  Similarity=0.127  Sum_probs=114.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEE--------------E--EEEE---CCeEEEEEEEeC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQT--------------K--TLSI---DHKTVKAQIWDT   71 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------~--~~~~---~~~~~~~~l~D~   71 (224)
                      .....++|+++|++++|||||+++|.+.......... ..+...              .  ....   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            4557799999999999999999999975432211000 000000              0  0000   123378999999


Q ss_pred             CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH
Q 027382           72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR  149 (224)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~  149 (224)
                      ||++.+...+...+..+|++|+|+|++++.+.....+++..+....  ..|+++++||+|+.+....  ..+++.++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998776777777776665543  2589999999999642211  11223333332


Q ss_pred             c---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          150 E---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       150 ~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .   +++++++||++|.|++++|+.|.+.+
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2   56899999999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=5.3e-21  Score=158.43  Aligned_cols=163  Identities=18%  Similarity=0.154  Sum_probs=106.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccC--CcceeeEEEEEEE-------------C--C----eEEEEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKA--TIGVEFQTKTLSI-------------D--H----KTVKAQ   67 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   67 (224)
                      ....++|+++|+.++|||||+++|.+...   .....+  |....+.......             .  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            34679999999999999999999986432   222223  3333333222211             1  1    137899


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHH
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQE  145 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~  145 (224)
                      +||+||++.+...+...+..+|++|+|+|++++.......+.+..+....  ..|+++++||+|+.+...  ...+++++
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            99999999998888888889999999999996432222233333333221  257999999999975433  23566777


Q ss_pred             HHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          146 FAQR---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       146 ~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++..   .+++++++||++|.|++++++.|.+.+
T Consensus       163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            7765   357899999999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=9.4e-22  Score=168.81  Aligned_cols=157  Identities=19%  Similarity=0.249  Sum_probs=111.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------Cc------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCChh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSV-------DS------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAGQE   75 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~   75 (224)
                      +..||+++|+.++|||||+++|+......       ..      ....|.++......+     ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632110       00      112244444333333     4457899999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL---  152 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---  152 (224)
                      .+...+...+..+|++|+|+|+++..+......|......    ++|+++|+||+|+.+..  .....+++....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999987777777777655543    68999999999997532  23345666666666   


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          153 FFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       153 ~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .++++||++|.|++++|+.+.+.+
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             eEEEeecccCCCchhHHHHHhhcC
Confidence            389999999999999999988765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.8e-22  Score=163.42  Aligned_cols=119  Identities=19%  Similarity=0.261  Sum_probs=100.8

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKC  130 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~  130 (224)
                      ..+.+++||++|++.++..|..++++++++|||||+++          ..++.....|+..+.+.. ..+.|+++++||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            36789999999999999999999999999999999999          457888888888887643 2579999999999


Q ss_pred             CCCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          131 DLGSLR---------------AVPTEDAQEFAQ-----------RENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       131 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      |+.+++               .++.+++.+++.           ..++.+++|||+++.||.++|.++.+.+.+..
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            984221               356788888887           34577999999999999999999999887543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=9.3e-22  Score=165.22  Aligned_cols=154  Identities=21%  Similarity=0.248  Sum_probs=113.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-RYR--------AVTSA   83 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~--------~~~~~   83 (224)
                      ..++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||.. .+.        .....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            3489999999999999999999997643 33334334444455555654  568999999976 442        22456


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      ++..+|++|+|+|++++.+.+.. .++..+     .+.|+++|+||+|+.+.  ...+++.+++. .+.+++++||++|.
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~  390 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE  390 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred             HhhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence            78899999999999987766543 233333     26899999999999642  44555655543 44689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIYR  178 (224)
Q Consensus       164 ~v~~~~~~i~~~i~~  178 (224)
                      |++++|++|.+.+..
T Consensus       391 Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          391 GLEKLEESIYRETQE  405 (482)
T ss_dssp             CHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987664

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.87  E-value=2.1e-21  Score=163.70  Aligned_cols=162  Identities=14%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCC----C---CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNE----F---SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS   82 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   82 (224)
                      ......++|+++|+.++|||||+++|.+..    .   .....+..+.+.....+..  ..+.+.+|||||++.+...+.
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~   91 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV   91 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence            344568999999999999999999999866    1   1222221122222222333  336899999999999999999


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHc----CCeEEE
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQRE----NLFFME  156 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~  156 (224)
                      ..+..+|++|+|+|+++... ....+++..+...   ++|+++++||+|+.+...  ...+++.+++...    +.++++
T Consensus        92 ~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           92 SAADIIDLALIVVDAKEGPK-TQTGEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             HHTTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             HHHhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999999987321 1122223333332   588899999999964211  1123455666655    568999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +||++|.|++++++.|.+.+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999887664

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=5.2e-21  Score=163.98  Aligned_cols=159  Identities=21%  Similarity=0.252  Sum_probs=114.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccc------CCcceeeEEE--EEEE---CCeEEEEEEEeCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNE--FSV-----DSK------ATIGVEFQTK--TLSI---DHKTVKAQIWDTAG   73 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~--~~~~---~~~~~~~~l~D~~G   73 (224)
                      .+...+|+++|+.++|||||+++|+...  ...     ...      ...|.++...  .+.+   ++..+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            4567899999999999999999998631  110     000      0112333211  1212   45568999999999


Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-  152 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-  152 (224)
                      +..+...+...+..+|++|+|+|+++..+......|......    ++|+++|+||+|+....  .....+++....++ 
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~----~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ----DLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC----CCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence            999999999999999999999999998777777777655542    68999999999997532  23345566666666 


Q ss_pred             --eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          153 --FFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       153 --~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                        .++++||++|.|++++|+.+++.+
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhc
Confidence              489999999999999999988765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=1e-21  Score=164.20  Aligned_cols=151  Identities=19%  Similarity=0.241  Sum_probs=102.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYY   85 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~   85 (224)
                      .+|+++|.+|||||||+|+|.+.... ....+.++.+.....+.+++  ..+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999987753 22333333344445555544  4578999999653         355677889


Q ss_pred             cCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEcCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDA-QEFAQRENL-FFMETSALE  161 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~  161 (224)
                      +.+|++++|+|++++.+..  .+..|+.   +   .+.|+++|+||+|+.+.  . ..++ .++. ..++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754332  2333432   2   16899999999998421  0 1233 4444 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIYR  178 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~~  178 (224)
                      |.|+.++|+.+...+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999887754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=7.8e-23  Score=170.78  Aligned_cols=152  Identities=18%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--------RYRAVTSAYYRG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~   87 (224)
                      .+|+++|.+|||||||+|+|.+..... ...+.|.+.......+......+.+|||||.+        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            689999999999999999999876542 22334566555555566666789999999975        567778888999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE  166 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  166 (224)
                      +|++|+|+|+.++.+... ..+...+++   .+.|+++|+||+|+.+...    ++.++. ..++ +++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d-~~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD-EEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH-HHHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999988655432 223233332   3689999999999864221    122233 3454 68999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++++++.+.+.
T Consensus       154 ~L~~~i~~~l~  164 (436)
T 2hjg_A          154 DLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHhcC
Confidence            99999887663

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=3.3e-21  Score=159.80  Aligned_cols=165  Identities=19%  Similarity=0.161  Sum_probs=111.6

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccC--CcceeeEEEEEEE-------------C--C----eEEE
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKA--TIGVEFQTKTLSI-------------D--H----KTVK   65 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   65 (224)
                      ......++|+++|+.++|||||+++|.+...   .....+  |....+.......             .  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            3456789999999999999999999996432   222223  3222332222211             0  1    1378


Q ss_pred             EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHH
Q 027382           66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDA  143 (224)
Q Consensus        66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~  143 (224)
                      +.+|||||++.+.......+..+|++|+|+|+++........+.+..+....  ..|+++++||+|+.+...  ...+++
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHH
Confidence            9999999999998888888889999999999996431222233333333221  257999999999864221  123345


Q ss_pred             HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          144 QEFAQR---ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       144 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++++..   .+++++++||++|.|++++++.|.+.+
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            555554   357899999999999999999887654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=9.5e-22  Score=153.53  Aligned_cols=164  Identities=13%  Similarity=0.087  Sum_probs=104.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCC-cceeeEEEEEEECCeEEEEEEEeCCChhhhh----------
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKAT-IGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----------   78 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------   78 (224)
                      +....++|+|+|++|||||||+++|++.... ..+.++ .+..........  ....+.+|||||...+.          
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW--GNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE--TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe--CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            3456799999999999999999999987743 333332 223333333333  34579999999975442          


Q ss_pred             -hhhHhHhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027382           79 -AVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGN-KCDLGSLRAVPT-------EDAQEFAQ  148 (224)
Q Consensus        79 -~~~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~~~~~~-------~~~~~~~~  148 (224)
                       .....+++.+|++|+|+|++.... ...+..++..+.... ...|+++++| |+|+.+. .+..       .+++++..
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence             223346789999999999986222 222333443332211 1356666666 9999742 2111       23445666


Q ss_pred             HcCCe---E--EEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          149 RENLF---F--METSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       149 ~~~~~---~--~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ..+..   +  +++||+++.|++++|..+.+.+..
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            65543   2  789999999999999999887754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=1.3e-21  Score=165.37  Aligned_cols=155  Identities=16%  Similarity=0.112  Sum_probs=104.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------ccCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----------------------------SKATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   62 (224)
                      ....+||+++|++++|||||+++|++......                             .....|+++......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            34679999999999999999999986521100                             0011144444444445566


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH------HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF------DHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      .+.+.+|||||++.+...+..++..+|++|+|+|++++++.      ....+.+..+....  ..|+++|+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccch
Confidence            77899999999999999999999999999999999986432      22233333333221  24699999999997533


Q ss_pred             CCCHHHH----HHHHHHc-----CCeEEEEcCCCCCCHHHH
Q 027382          137 AVPTEDA----QEFAQRE-----NLFFMETSALEATNVETA  168 (224)
Q Consensus       137 ~~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~v~~~  168 (224)
                      ....+++    .++....     +++++++||++|.|+.++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            3333333    3333333     357999999999999853

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=7.5e-21  Score=158.66  Aligned_cols=157  Identities=18%  Similarity=0.172  Sum_probs=109.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDH   61 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   61 (224)
                      +....++|+++|++++|||||+++|++.......                             ....|.+.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            4557799999999999999999999654211100                             01124555555555556


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS---F---DHMARWLDELRGHADKNIV-IMLIGNKCDLGS  134 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~  134 (224)
                      ....+.+|||||++.+...+...+..+|++|+|+|+++...   +   ....+.+..+...   ++| +++++||+|+.+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKHLIVLINKMDDPT  169 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCeEEEEeecCCCcc
Confidence            66799999999999999999999999999999999998532   1   1233333333322   466 899999999853


Q ss_pred             CC--C----CCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 027382          135 LR--A----VPTEDAQEFAQREN------LFFMETSALEATNVETAFL  170 (224)
Q Consensus       135 ~~--~----~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  170 (224)
                      ..  .    ...+++..++...+      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21  1    11233445555544      4699999999999999765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=1.6e-20  Score=152.83  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=107.3

Q ss_pred             eEE-EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhHhH
Q 027382           15 VFK-VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTSAY   84 (224)
Q Consensus        15 ~i~-i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~   84 (224)
                      .++ |+++|.+|+|||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|.         +.+...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            344 99999999999999999998876433333323344455566665  46789999995         2233333 34


Q ss_pred             hcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEc
Q 027382           85 YRGAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRE---NLFFMETS  158 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s  158 (224)
                      +..+|++++|+|++++.  .......|...+......+.|+++|.||+|+.+.... ....+..++...   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78899999999999876  5555555666665544357899999999998643210 011233344444   23689999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 027382          159 ALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       159 ~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ++++.|++++++.|.+.+..
T Consensus       335 A~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhcc
Confidence            99999999999998876644

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=6.5e-22  Score=158.03  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=99.1

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHAD-KNIVIMLIGNKC  130 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~  130 (224)
                      ..+.+++||++|++.++..|..++++++++|||||++          +..++.+...|+..+.+... .+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            4588999999999999999999999999999999665          56778888888887765432 579999999999


Q ss_pred             CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          131 DLGSLR----------------AVPTEDAQEFAQ----------RENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       131 D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      |+.+++                ..+.+++.+|+.          ..++.+++|||+++.||..+|..+.+.+++..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            985322                467788888853          34567899999999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=2.6e-21  Score=154.01  Aligned_cols=156  Identities=21%  Similarity=0.192  Sum_probs=104.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhHhH
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-R--------YRAVTSAY   84 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~--------~~~~~~~~   84 (224)
                      ...+|+++|++|+|||||+|+|++.......... +.+.......+......+.+|||||.. .        +......+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~-~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA-QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS-SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC-CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3457999999999999999999998754221111 122211111123345688999999986 2        23334566


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEA  162 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  162 (224)
                      ++.+|++++|+|+++   +.....++ ..+..   .+.|+++++||+|+........+.+.++....+. .++++||+++
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            789999999999976   22222333 23332   3689999999999864212122345556555665 6999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEI  176 (224)
Q Consensus       163 ~~v~~~~~~i~~~i  176 (224)
                      .|++++++.+...+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999887544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=1.1e-21  Score=154.41  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=92.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-c-------cCCcceeeEEEEEEECCeEEEEEEEeCCChh-------h
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-S-------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-------R   76 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~   76 (224)
                      ....++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            45679999999999999999999987665433 2       3444555555444445556799999999962       2


Q ss_pred             hhhhh-------HhHhc-------------CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           77 YRAVT-------SAYYR-------------GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        77 ~~~~~-------~~~~~-------------~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      +..+.       ..++.             .+|+++++++.+.......-..++..+..    .+|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22222       33333             37899999987762222222334555544    69999999999985322


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          137 AV--PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ..  ..+.+.+.+...+++++++|++++.|+.+++.+|.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            11  1123445556678899999999999999988877653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=1.5e-21  Score=163.32  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------Hh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT--------SA   83 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~   83 (224)
                      ...++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||...+...+        ..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            35689999999999999999999987543 23333333444434445554  567999999976554332        23


Q ss_pred             HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382           84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT  163 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (224)
                      ++..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.+.....  ..+++.  ...+++++||++|.
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~  369 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQ  369 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCC
Confidence            5789999999999998655543 44555553     36999999999996543322  111111  34679999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027382          164 NVETAFLTVLTEIY  177 (224)
Q Consensus       164 ~v~~~~~~i~~~i~  177 (224)
                      |++++|+.+.+.+.
T Consensus       370 Gi~eL~~~i~~~~~  383 (462)
T 3geh_A          370 GIDSLETAILEIVQ  383 (462)
T ss_dssp             SHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999987664

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=2.6e-21  Score=164.28  Aligned_cols=121  Identities=18%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------------Ccc-----CCcceeeEEEEEEECCeEEEEEEE
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV---------------DSK-----ATIGVEFQTKTLSIDHKTVKAQIW   69 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~   69 (224)
                      .+.+...+|+|+|++|+|||||+++|+......               ...     ...|.++......+.+..+.+.+|
T Consensus         8 ~~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~li   87 (528)
T 3tr5_A            8 KQTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLL   87 (528)
T ss_dssp             HHHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEE
T ss_pred             hhhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEE
Confidence            345677899999999999999999997321100               000     001233333333344456789999


Q ss_pred             eCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           70 DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ||||+..+...+..+++.+|++|+|+|+++..+......| ..+..   .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999986666555444 33333   2689999999999964

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=7.5e-21  Score=158.67  Aligned_cols=157  Identities=20%  Similarity=0.167  Sum_probs=108.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------ccCC-------------------cceeeEEEEEEEC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD------------SKAT-------------------IGVEFQTKTLSID   60 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~   60 (224)
                      ....++|+++|++++|||||+++|++......            ..++                   .|.+.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34679999999999999999999987541100            0011                   1222222233344


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--
Q 027382           61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--  138 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--  138 (224)
                      .....+.+|||||++.+...+..++..+|++|+|+|++++.. ....+++..+....  ..|+++++||+|+.+....  
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence            456789999999999998888899999999999999998542 23344444444331  2369999999999752211  


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHH
Q 027382          139 --PTEDAQEFAQREN-----LFFMETSALEATNVETAFLT  171 (224)
Q Consensus       139 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~~  171 (224)
                        ..+++.++++.++     ++++++||++|.|+.++|..
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence              1244566777777     57999999999999886443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=1.9e-21  Score=157.86  Aligned_cols=120  Identities=19%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKC  130 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~  130 (224)
                      ..+.+++||++|++.++..|..++++++++|||||+++          ..++.....|+..+.+.. ..+.|+++++||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            35789999999999999999999999999999999999          678999999998887653 3579999999999


Q ss_pred             CCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          131 DLGSLR----------------AVPTEDAQEFAQ-----------RENLFFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       131 D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      |+.+++                .++.+++..++.           ..++.+++|||+++.|+.++|.++.+.+.+...
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            985321                256778887762           345778999999999999999999998876544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=9e-21  Score=158.44  Aligned_cols=161  Identities=20%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-----------   80 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------   80 (224)
                      +..++|+++|++|||||||+|+|++.... ....+..+.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            45799999999999999999999987643 222222222233344455554  5789999996433211           


Q ss_pred             -hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-HHH----cCCeE
Q 027382           81 -TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-AQR----ENLFF  154 (224)
Q Consensus        81 -~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~  154 (224)
                       ...++..+|++++|+|++++.+... ..+...+..   .+.|+++++||+|+.+......++..+. ...    .++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             1346778999999999987555443 223333332   3689999999999975444344444322 222    35789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998766543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=6.3e-21  Score=154.31  Aligned_cols=120  Identities=19%  Similarity=0.227  Sum_probs=95.5

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382           62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHA-DKNIVIMLIGNKC  130 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~  130 (224)
                      ..+.+++||++|++.++..|..++++++++|||||++          +..+++....|+..+.+.. ..++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          7789999999998887653 2579999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 027382          131 DLGSLRA--V-------------------PTEDAQEFAQR----------------ENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus       131 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |+.+++.  +                   +.+++.+++..                ..+.+++|||+++.||.++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   14566666443                123468999999999999999999


Q ss_pred             HHHHHHHh
Q 027382          174 TEIYRIIS  181 (224)
Q Consensus       174 ~~i~~~~~  181 (224)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=5.2e-23  Score=174.25  Aligned_cols=159  Identities=16%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ++..+|+++|++++|||||+++|.+..+...+.++.+.++....+... ....+.+|||||++.+..++..++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            346789999999999999999999876654444444333333322221 2346899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHH---HHHc--CCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEF---AQRE--NLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~v~  166 (224)
                      +|+|+++........ ++..+..   .++|+++++||+|+.+.... ...++..+   +..+  .++++++||++|.|++
T Consensus        81 LVVDa~dg~~~qt~e-~l~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQTVE-SIQHAKD---AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHHHHH-HHHHHHT---TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            999999855444333 3333332   36899999999999643221 11222222   1112  2479999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|+.+...+
T Consensus       157 eLle~I~~l~  166 (537)
T 3izy_P          157 ALAEATIALA  166 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHhh
Confidence            9999988655

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=5.1e-21  Score=153.36  Aligned_cols=120  Identities=17%  Similarity=0.241  Sum_probs=98.3

Q ss_pred             ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEE
Q 027382           59 IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHA-DKNIVIMLIG  127 (224)
Q Consensus        59 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~  127 (224)
                      +....+.+++||++|++.++..|..++++++++|||||++          +..++.+...|+..+.+.. ..++|+++++
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~  235 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL  235 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred             EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence            3445688999999999999999999999999999999998          6788988888888776653 2579999999


Q ss_pred             eCCCCCCC---------------CCCCHHHHHHHHHH---------------------------cCCeEEEEcCCCCCCH
Q 027382          128 NKCDLGSL---------------RAVPTEDAQEFAQR---------------------------ENLFFMETSALEATNV  165 (224)
Q Consensus       128 nK~D~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~v  165 (224)
                      ||+|+.++               ...+.+++.+|+..                           ..+.+++|||++..||
T Consensus       236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            99998421               11246666555432                           2367899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027382          166 ETAFLTVLTEIYR  178 (224)
Q Consensus       166 ~~~~~~i~~~i~~  178 (224)
                      ..+|..+.+.|++
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999987

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=6.1e-21  Score=155.69  Aligned_cols=147  Identities=12%  Similarity=0.053  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      +|+++|++++|||||+++|+      ..    +.+.......+......+.+|||||++.+.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~----giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KK----GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EE----EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hC----CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998      11    222222333455556679999999999998888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHcC---CeEEE--EcCCC---CCC
Q 027382           97 MTKRQSFDHMARWLDELRGHADKNIVI-MLIGN-KCDLGSLRAVP--TEDAQEFAQREN---LFFME--TSALE---ATN  164 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~  164 (224)
                       +. ......++++..+...   ++|. ++++| |+|+ +.....  .++++++++..+   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 4445556666555543   4676 88999 9998 422211  144555655543   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIYRI  179 (224)
Q Consensus       165 v~~~~~~i~~~i~~~  179 (224)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998876543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.4e-22  Score=162.14  Aligned_cols=166  Identities=14%  Similarity=0.234  Sum_probs=92.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccc--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSK--------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ-------E   75 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~   75 (224)
                      ....++|+|+|++|+|||||+++|++..... .+.        ++.+.......+...+..+.+.+|||||.       +
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            4567899999999999999999987754332 221        23333333333333455678999999998       5


Q ss_pred             hhhhhhH-------hHhcCC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           76 RYRAVTS-------AYYRGA-------------VGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        76 ~~~~~~~-------~~~~~~-------------d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .+..++.       .++..+             ++++|+++.+ ..++..+. .++..+.    .++|+++|+||+|+..
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT  188 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence            5655554       555433             3455555442 34444443 3444332    4799999999999965


Q ss_pred             CCCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382          135 LRAVPT--EDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK  183 (224)
Q Consensus       135 ~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~  183 (224)
                      .+.+..  +++.+++..++++++++||+++.+ ++.|..+.+.+.+..+..
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~  238 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFS  238 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCC
Confidence            433322  456666777889999999999999 899999998887766543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=7.2e-21  Score=141.75  Aligned_cols=117  Identities=20%  Similarity=0.301  Sum_probs=89.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC-
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG-   87 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-   87 (224)
                      .+..++|+++|++|||||||+++|.+..+...   +.++.+         .....+.+.+||+||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            45678999999999999999999999875431   112211         12245678999999998887777777766 


Q ss_pred             ---CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCCCCC
Q 027382           88 ---AVGAMLVYDMT-KRQSFDHMARWLDELRGH----ADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus        88 ---~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~D~~~~~~  137 (224)
                         +|++|+|||++ +++++..+..|+..+...    ...+.|+++|+||+|+.+...
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 899999988888776543    234799999999999975443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=1.2e-21  Score=164.57  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=102.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhHhHh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG--------QERYRAVTSAYY   85 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~~   85 (224)
                      ...+|+|+|.+|||||||+|+|.+...... ..+.|.+.......+......+.+|||||        ++.+...+..++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            457899999999999999999998776422 23346666666666777778899999999        778888899999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN  164 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  164 (224)
                      ..+|++|+|+|..+..+.  ...++..+.+.  .+.|+++|+||+|+.+..    ....++.. .+. .++++||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~-lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYS-LGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSGG-GSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHH-cCCCceEEeecccccc
Confidence            999999999998763222  22333222222  379999999999985321    11222222 232 478999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      +.++++.+.+.+
T Consensus       172 v~~L~~~i~~~l  183 (456)
T 4dcu_A          172 LGDLLDAVAEHF  183 (456)
T ss_dssp             HHHHHHHHHTTG
T ss_pred             hHHHHHHHHhhc
Confidence            999999987654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=9.1e-21  Score=156.46  Aligned_cols=158  Identities=18%  Similarity=0.095  Sum_probs=109.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE-------FSVD-------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      ..++|+++|++++|||||+++|.+..       +...       .....|.+.......+......+.+|||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998731       1000       001234455544455555567899999999999988


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRA---VPTEDAQEFAQREN----  151 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~----  151 (224)
                      .+...+..+|++|+|+|+++...... .+++..+...   ++| +++++||+|+.+...   ...+++++++..++    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88899999999999999998543333 3333444332   578 789999999864111   11235666777765    


Q ss_pred             -CeEEEEcCCCCCC----------HHHHHHHHHHH
Q 027382          152 -LFFMETSALEATN----------VETAFLTVLTE  175 (224)
Q Consensus       152 -~~~~~~s~~~~~~----------v~~~~~~i~~~  175 (224)
                       ++++++||++|.|          +.++++.+.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             5899999999764          66666665543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=1e-20  Score=154.84  Aligned_cols=119  Identities=17%  Similarity=0.206  Sum_probs=97.5

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKCD  131 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D  131 (224)
                      .+.+++||++|++.++..|..++++++++|||||+++          ..++..+..|+..+.+.. ..++|++||+||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            4789999999999999999999999999999999999          889999999999887753 36799999999999


Q ss_pred             CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCHHHH
Q 027382          132 LGSLRA---V---------------------------PTEDAQEFA-----QR--------ENLFFMETSALEATNVETA  168 (224)
Q Consensus       132 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~~  168 (224)
                      +.+.+.   +                           ..+++..|+     ..        ..+.+++|||+++.||.++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            843211   1                           135566653     22        2456789999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027382          169 FLTVLTEIYRIIS  181 (224)
Q Consensus       169 ~~~i~~~i~~~~~  181 (224)
                      |..+.+.+.+...
T Consensus       376 F~~v~~~I~~~~l  388 (402)
T 1azs_C          376 FNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=2.6e-21  Score=160.15  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=107.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------ccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN--------EFSVD-------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .....++|+++|++++|||||+++|.+.        .+...       .....|.++......+......+.+|||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            4456799999999999999999999873        11100       00123444444455555566789999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQREN  151 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~  151 (224)
                      .+...+...+..+|++|+|+|+++... ....+++..+...   ++| +++++||+|+.+....   ..+++++++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998889999999999999999988543 3345555555543   577 8899999999641110   1234566776665


Q ss_pred             -----CeEEEEcCCCCCC
Q 027382          152 -----LFFMETSALEATN  164 (224)
Q Consensus       152 -----~~~~~~s~~~~~~  164 (224)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6799999999977

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=5.3e-21  Score=159.56  Aligned_cols=154  Identities=17%  Similarity=0.197  Sum_probs=105.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCc---------------------------cCCcceeeEEEEEEECCeE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN--EFSVDS---------------------------KATIGVEFQTKTLSIDHKT   63 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   63 (224)
                      ...++|+++|++++|||||+++|++.  .+....                           ....|.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999874  222110                           0011333333333455566


Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHH-------HHHHHHHhcCCCCC-cEEEEEeCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-------RWLDELRGHADKNI-VIMLIGNKCDLGSL  135 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-p~ilv~nK~D~~~~  135 (224)
                      +.+.+|||||++.+...+..++..+|++|+|+|+++ .+++...       +.+..+...   ++ |+++++||+|+.+.
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence            789999999999999999999999999999999998 6666433       322222222   33 58999999999652


Q ss_pred             C--C----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382          136 R--A----VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL  170 (224)
Q Consensus       136 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  170 (224)
                      .  +    ...+++++++..++     ++++++||++|.|+.+++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1  1    11345667777765     6799999999999986654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=9.1e-20  Score=156.65  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------------HKTVKAQIWDTAGQERY   77 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~   77 (224)
                      +..+|+++|++++|||||+++|++.............+.........                .....+.+|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            46789999999999999999998764422111011111111111110                11225899999999999


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-------------H-
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-------------T-  140 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~-  140 (224)
                      ..++...+..+|++|+|+|+++   +.+++.+..    +..   .++|+++++||+|+.......             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999998   555554332    232   268999999999996422110             0 


Q ss_pred             --H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          141 --E-------DAQEFAQREN---------------LFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       141 --~-------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                        +       ++.+...+.+               .+++++||++|.|++++++++...+...
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence              0       1111122222               3799999999999999999998776543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=5.4e-21  Score=165.03  Aligned_cols=155  Identities=15%  Similarity=0.088  Sum_probs=106.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------------------------CCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------------------------ATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|++++|||||+++|++........                             ...|+++......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            4567899999999999999999999764322110                             01234443333444456


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      .+.+.+|||||++.+...+..++..+|++|+|+|++++..      .......+..+....  ..|+++|+||+|+.+..
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg--i~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT--CCEEEEEEECTTTTTTC
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC--CCeEEEEEecccccchh
Confidence            6789999999999999999999999999999999987421      112233333333221  24599999999997533


Q ss_pred             CCCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 027382          137 AVPT----EDAQEFAQREN-----LFFMETSALEATNVETA  168 (224)
Q Consensus       137 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  168 (224)
                      ....    +++..++...+     ++++++||++|.|+.++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2222    23344444443     58999999999999876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=4.6e-21  Score=161.13  Aligned_cols=154  Identities=18%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------cc-----CCcceeeEEEEEEECCeE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNE--FSVD----------------------SK-----ATIGVEFQTKTLSIDHKT   63 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~   63 (224)
                      ...++|+++|+.++|||||+++|+...  +...                      .+     ...|.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            567999999999999999999997521  1100                      00     011223322222233345


Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFD---HMARWLDELRGHADKNIV-IMLIGNKCDLGSLR  136 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~  136 (224)
                      ..+.+|||||++.|...+...+..+|++|+|+|+++..   +|+   ...+.+..+..   .++| +++++||+|+.+..
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence            78999999999999998999999999999999999852   222   22222222222   2576 99999999995421


Q ss_pred             C------CCHHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHH
Q 027382          137 A------VPTEDAQEFAQRE-------NLFFMETSALEATNVETAF  169 (224)
Q Consensus       137 ~------~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~  169 (224)
                      .      ...+++.+++...       +++++++||++|.|+.++|
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1      1123466666665       3569999999999998766

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=3.1e-20  Score=147.62  Aligned_cols=162  Identities=12%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cCCc-----------------c---eeeE------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------KATI-----------------G---VEFQ------------   53 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~-----------------~---~~~~------------   53 (224)
                      ....++|+|+|.+|||||||+|+|++..+.+..      .++.                 |   .++.            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999998764211      1210                 0   0000            


Q ss_pred             -----------EEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHhcCCCEEE-EEEeCCChhhHHHHH
Q 027382           54 -----------TKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDMTKRQSFDHMA  107 (224)
Q Consensus        54 -----------~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~~  107 (224)
                                 ...+.+. .....+.+|||||..             .+..+...+++.++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0000010 013579999999953             45667788888888776 799998754443333


Q ss_pred             HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR--EN-LFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .++..+.   ..+.|+++|+||+|+.+......+.++.....  .+ .+++++||++|.|++++|+.+....
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            4444443   24689999999999975443223322211001  12 3578899999999999999988743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.80  E-value=1.1e-19  Score=163.24  Aligned_cols=160  Identities=19%  Similarity=0.140  Sum_probs=107.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNE-------FSV-------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   76 (224)
                      .....++|+++|++++|||||+++|.+..       +..       ....+.|+++....+.++.....+.+|||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            34567999999999999999999998731       000       0112334444433344555667899999999999


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQREN-  151 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~-  151 (224)
                      +.......+..+|++|+|+|+++.... ...+++..+...   ++| +++++||+|+.+....   ..+++++++..++ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            998888999999999999999985332 234444444432   577 7899999999742111   1235666777665 


Q ss_pred             ----CeEEEEcCCCCC--------CHHHHHHHHHH
Q 027382          152 ----LFFMETSALEAT--------NVETAFLTVLT  174 (224)
Q Consensus       152 ----~~~~~~s~~~~~--------~v~~~~~~i~~  174 (224)
                          ++++++||++|.        |+.++++.+..
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence                589999999993        45555555543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.80  E-value=1.3e-19  Score=151.87  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=104.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------c----c-----CCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN--EFSVD------------------S----K-----ATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|++++|||||+++|++.  .+...                  +    .     ...|.+.......+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            346799999999999999999999864  11110                  0    0     00133332222334455


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFD---HMARWLDELRGHADKNIV-IMLIGNKCDLGSL  135 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~  135 (224)
                      .+.+.+|||||++.+...+...+..+|++|+|+|+++..   +++   ...+++..+...   ++| +++++||+|+.+.
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccC
Confidence            678999999999999999999999999999999999753   221   233333333322   455 8999999999632


Q ss_pred             CCC----CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 027382          136 RAV----PTEDAQEFAQREN-----LFFMETSALEATNVETA  168 (224)
Q Consensus       136 ~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  168 (224)
                      ...    ..+++.+++..++     ++++++||++|.|+.++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            111    1234556666655     68999999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=7.8e-19  Score=153.24  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----------------CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----------------TIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      .+...+|+++|+.|+|||||+++|++.........                ..+.++......+....+.+++|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            45678999999999999999999985432211100                11334434444444456789999999999


Q ss_pred             hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .+...+..+++.+|++++|+|+++..... ...++..+...   ++|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence            99999999999999999999998754333 23444444432   68999999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=2.6e-21  Score=162.59  Aligned_cols=156  Identities=14%  Similarity=0.151  Sum_probs=105.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ++..+|+++|++++|||||+++|.+..+.....+..+.+.....  +......+.+|||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            35678999999999999999999876544333222222222222  2233457899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--CCCHH--HHHHHHHHcC--CeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR--AVPTE--DAQEFAQREN--LFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~~v~  166 (224)
                      +|+|+++..... ..+++..+..   .++|+++++||+|+.+..  .+..+  +...+...++  ++++++||++|.|++
T Consensus        80 LVVda~~g~~~q-T~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQ-TIEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTT-THHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHH-HHHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            999998832211 1122222322   268999999999996421  11000  0001112222  689999999999999


Q ss_pred             HHHHHHHH
Q 027382          167 TAFLTVLT  174 (224)
Q Consensus       167 ~~~~~i~~  174 (224)
                      ++|+.+..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=5.2e-19  Score=133.39  Aligned_cols=156  Identities=18%  Similarity=0.200  Sum_probs=98.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAVT   81 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~   81 (224)
                      .+...+|+++|++|||||||+++|.+..+...+.++.|.+.....+.+.+   .+.+||+||..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34567899999999999999999998764333344545554433333322   57899999963          233333


Q ss_pred             HhHh---cCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--C
Q 027382           82 SAYY---RGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN--L  152 (224)
Q Consensus        82 ~~~~---~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  152 (224)
                      ..++   ..++++++++|++++.+..  .+..|+   ..   .+.|++++.||+|+....+  .....+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            4444   5789999999998854432  223333   22   2688999999999853211  11234455555544  4


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          153 FFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       153 ~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .++++|++++.|++++++.+.+.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHH
Confidence            688999999999999999887654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=1.5e-19  Score=141.20  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=84.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc-----
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR-----   86 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-----   86 (224)
                      ...++|+++|.+|+|||||+++|++...... ..+..+.......+..  ....+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4689999999999999999999999775322 2122122223333333  4458999999998766544444433     


Q ss_pred             ----CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCC--CcEEEEEeCCCCCCCCCCCHH
Q 027382           87 ----GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN--IVIMLIGNKCDLGSLRAVPTE  141 (224)
Q Consensus        87 ----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~~~~~~~  141 (224)
                          .+|++++|++++..........|+..+.+....+  .|+++|+||+|+.+......+
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence                7899999999876442222345666666544322  489999999999644444443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.77  E-value=2.1e-18  Score=151.02  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------CCc---c-----CCcceeeEEEEEEECCeEEEEEEEeC
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNE--FS------VDS---K-----ATIGVEFQTKTLSIDHKTVKAQIWDT   71 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~------~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~D~   71 (224)
                      +..+.+...+|+|+|++|+|||||+++|+...  ..      ...   +     ...+.+.......+.+..+.+.+|||
T Consensus         5 l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDT   84 (691)
T 1dar_A            5 VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDT   84 (691)
T ss_dssp             CCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECC
T ss_pred             ccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEEC
Confidence            45567789999999999999999999998421  10      000   0     01122222222233334578999999


Q ss_pred             CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ||+..+...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++|+||+|+..
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999999998777666555543 333   2689999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=2.1e-18  Score=146.58  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccCCcceeeEEEEEEECCeEEEEEE
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------------SKATIGVEFQTKTLSIDHKTVKAQI   68 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l   68 (224)
                      +...+..++|+++|++|+|||||+++|+.......                    .....|.++......+.+..+.+.+
T Consensus         7 ~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~l   86 (529)
T 2h5e_A            7 LQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNL   86 (529)
T ss_dssp             HHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEE
T ss_pred             hhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEE
Confidence            34456789999999999999999999996421110                    0011223332223334445678999


Q ss_pred             EeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      |||||+..+......++..+|++|+|+|+++..... ...++..+..   .++|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~---~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL---RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred             EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence            999999999888888999999999999998853322 2333333332   3689999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=7.5e-20  Score=157.51  Aligned_cols=152  Identities=24%  Similarity=0.249  Sum_probs=83.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCe
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHK   62 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   62 (224)
                      ....++|+++|++++|||||+++|++.......                             ....|+++......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999752110000                             001234444444445556


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hH---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SF---DHMARWLDELRGHADKNIV-IMLIGNKCDLGSL  135 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~  135 (224)
                      ...+.+|||||+..+...+...+..+|++|+|+|++++.   ++   ......+..+...   ++| +++|+||+|+.+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence            688999999999999888888999999999999998632   11   1222222333332   455 8999999998642


Q ss_pred             CCCC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 027382          136 RAVP----TEDAQEFA-QRENL-----FFMETSALEATNVE  166 (224)
Q Consensus       136 ~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~  166 (224)
                      ....    ..++..+. ...++     +++++||++|.|+.
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            2111    12344444 44444     69999999999997

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=7.4e-19  Score=137.89  Aligned_cols=126  Identities=12%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh-------HhH-
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT-------SAY-   84 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~-   84 (224)
                      ...++|+++|.+|+|||||+|+|++........ ..+.+.......+....+.+.+|||||...+....       ..+ 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            468999999999999999999999877532221 12233333333344455789999999976553221       112 


Q ss_pred             -hcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCC--CcEEEEEeCCCCCCCCCCCH
Q 027382           85 -YRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKN--IVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        85 -~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~~~~~~  140 (224)
                       ...+|+++||+|++.. ++.. ...|+..+.+....+  .|+++|+||+|+.+......
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence             2478999999998653 3332 235666665543322  69999999999965443333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=3.9e-19  Score=141.39  Aligned_cols=164  Identities=14%  Similarity=0.244  Sum_probs=87.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCccC------CcceeeEEEEEEE--CCeEEEEEEEeCCCh-------h
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN-EFSVDSKA------TIGVEFQTKTLSI--DHKTVKAQIWDTAGQ-------E   75 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~G~-------~   75 (224)
                      ....++|+|+|++|+|||||+++|++. .++..+.+      +.+.......+.+  .+....+.+||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            456689999999999999999999875 33332211      0011111111222  334568999999997       4


Q ss_pred             hhhhhhH-------hHhc-------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           76 RYRAVTS-------AYYR-------------GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        76 ~~~~~~~-------~~~~-------------~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .+..+..       .++.             .+++++|+.+++. .+++... +++..+   . ...|+++|+||.|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence            4444433       3332             2344666666543 1222222 233333   2 2578999999999864


Q ss_pred             CCCC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382          135 LRAV--PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS  181 (224)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~  181 (224)
                      .+++  ..+++.+++..++++++++||+++ |++++|..+.+.+.+..+
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            3322  235677888899999999999999 999999999988865443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=1.3e-18  Score=141.82  Aligned_cols=158  Identities=13%  Similarity=0.122  Sum_probs=104.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcc---eeeEE------------------------------------
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIG---VEFQT------------------------------------   54 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~------------------------------------   54 (224)
                      ...+|+|+|++|||||||+|+|.+..+.+....+.+   .....                                    
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            444999999999999999999999776333222211   00000                                    


Q ss_pred             -------------EEEEE-CCeEEEEEEEeCCChhhh-------------hhhhHhHhcCCCEEEEEEeCCChhhHHHHH
Q 027382           55 -------------KTLSI-DHKTVKAQIWDTAGQERY-------------RAVTSAYYRGAVGAMLVYDMTKRQSFDHMA  107 (224)
Q Consensus        55 -------------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~  107 (224)
                                   ..+.+ ......+.+|||||...+             ..+...++.++|++|+|++.++.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         00000 011235899999996654             667788899999999999876533221  2


Q ss_pred             HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382          108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus       108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      .|+..+......+.|+++|+||+|+.+......+.++.+....+.+|++++++++.++++.+..+.
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            344444554455789999999999976555545555555555678899999998877776655433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.75  E-value=1.2e-17  Score=146.33  Aligned_cols=164  Identities=14%  Similarity=0.202  Sum_probs=108.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeE-------EEEEEE------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQ-------TKTLSI------------------------   59 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~-------~~~~~~------------------------   59 (224)
                      .+..++|+|+|.+|+|||||+|+|++....+. ..++......       ..+..+                        
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            45689999999999999999999998775432 2332210000       001111                        


Q ss_pred             ----------------------CCeE--EEEEEEeCCChhhh---hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHH
Q 027382           60 ----------------------DHKT--VKAQIWDTAGQERY---RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE  112 (224)
Q Consensus        60 ----------------------~~~~--~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~  112 (224)
                                            ....  ..+.+|||||....   ...+..+++.+|++|+|+|++++.+......|...
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~  225 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY  225 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence                                  0000  35899999996553   44566788999999999999987777666656544


Q ss_pred             HHhcCCCCCcEEEEEeCCCCCCCCCCCHH---H-------HHHH----H-HH--------cCCeEEEEcCC---------
Q 027382          113 LRGHADKNIVIMLIGNKCDLGSLRAVPTE---D-------AQEF----A-QR--------ENLFFMETSAL---------  160 (224)
Q Consensus       113 ~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~-------~~~~----~-~~--------~~~~~~~~s~~---------  160 (224)
                      +..   .+.|+++|+||+|+.....++.+   +       +.+.    . ..        ...+++++||+         
T Consensus       226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            433   25789999999998543211111   1       2111    1 11        12368999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHHH
Q 027382          161 -----EATNVETAFLTVLTEIYR  178 (224)
Q Consensus       161 -----~~~~v~~~~~~i~~~i~~  178 (224)
                           ++.|+++++..+.+.+..
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHHH
Confidence                 999999999999887644

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=9.7e-18  Score=134.22  Aligned_cols=163  Identities=13%  Similarity=0.108  Sum_probs=97.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCccee---eEEE--------------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVE---FQTK--------------------------------   55 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~---~~~~--------------------------------   55 (224)
                      .....+|+|+|.+|+|||||+|+|++..+.+... ......   ....                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3466799999999999999999999987522211 000000   0000                                


Q ss_pred             ---------------------EEE-ECCeEEEEEEEeCCChhh-------------hhhhhHhHhcCCCEEEEEEeCCCh
Q 027382           56 ---------------------TLS-IDHKTVKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVYDMTKR  100 (224)
Q Consensus        56 ---------------------~~~-~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~  100 (224)
                                           .+. .......+.+|||||...             +......++..+|++++|+|.++.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124689999999642             556677889999999999998542


Q ss_pred             hhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHH
Q 027382          101 QSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE------ATNVETAFLTVL  173 (224)
Q Consensus       101 ~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~~~~i~  173 (224)
                      ... .....++..+.   ..+.|+++|+||+|+.+......+.++......+..|+++++..      +.|+.+++..+.
T Consensus       181 ~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          181 DLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             CSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            211 11122333333   23689999999999975443223322211111225677776554      678888888776


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      +.+.
T Consensus       258 ~~~~  261 (315)
T 1jwy_B          258 LYFK  261 (315)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6553

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.74  E-value=1.4e-17  Score=137.25  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----YRAVTS---AYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~---~~~~~~d   89 (224)
                      .|+|+|++|||||||+++|.+........+..+.......+..+. ...+.+||+||...    ...+..   ..+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            479999999999999999998753222222211222222233322 35688999999632    111222   2345799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      .+++++|++ ...+..+..+...+.....  ...|.++++||+|+...  ...+++.+.+...+..++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 4566666666555544321  25789999999998642  223445555566678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          168 AFLTVLTEIYR  178 (224)
Q Consensus       168 ~~~~i~~~i~~  178 (224)
                      ++..+.+.+.+
T Consensus       315 L~~~i~~~l~~  325 (416)
T 1udx_A          315 LKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=7.7e-17  Score=141.37  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=85.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------cc---CCcceeeEEEEEEECC-------eEEEEE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNE--FSVD-----------SK---ATIGVEFQTKTLSIDH-------KTVKAQ   67 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~-----------~~---~~~~~~~~~~~~~~~~-------~~~~~~   67 (224)
                      +.+...+|+|+|+.|+|||||+++|+...  +...           +.   ...+.++......+.+       ..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            45678899999999999999999997531  1100           00   0123333333333322       238999


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      +|||||+..+...+..+++.+|++|+|+|+++.........|. .+..   .++|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence            9999999999889999999999999999999865554444443 2322   2689999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=3.1e-17  Score=143.67  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC---cc-C----------CcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN--EFSVD---SK-A----------TIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~---~~-~----------~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +.+...+|+|+|++|+|||||+++|+..  .....   .. .          ..+.+.......+....+.+.+|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            3466889999999999999999999852  21100   00 0          0122222222223334578999999999


Q ss_pred             hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+...+..+++.+|++|+|+|+++..+......|.. +...   ++|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            9998889999999999999999998766665555543 3332   689999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.70  E-value=1.7e-17  Score=136.96  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS--------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-----   78 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----   78 (224)
                      ....++|+|+|++|+|||||++.|++.......        .++.+...........+....+.+||++|.....     
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            455678999999999999999999987653221        1111111111111112333578999999965431     


Q ss_pred             --hh------------------hHhHhcCCC--EEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           79 --AV------------------TSAYYRGAV--GAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        79 --~~------------------~~~~~~~~d--~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                        .+                  ...++.+++  +++|+.+++. .+++... .|+..+..    ++|+++|+||+|+...
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~----~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc----cCcEEEEEEcccCccH
Confidence              11                  122334444  4555544431 2333332 46665542    6899999999998643


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          136 RAVPT--EDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       136 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      +.+..  .++.+++..++++++++|++++.++.++|..+...
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            33332  55677788889999999999999999877666543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=3.7e-18  Score=135.84  Aligned_cols=134  Identities=16%  Similarity=0.095  Sum_probs=108.9

Q ss_pred             HHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHH
Q 027382           30 QLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMA  107 (224)
Q Consensus        30 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~  107 (224)
                      +|+.++..+.+. ..+.+|+|..+. ..+..++   .+.+||+  ++.++.+++.+++++|++|+|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888887 788899885544 3222222   7899999  8889999999999999999999999987 788888


Q ss_pred             HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 027382          108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      .|+..+..   .++|+++|+||+|+.+.+.  .+++++++..++  .+++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99987765   3799999999999964322  245777777777  89999999999999999988754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1.1e-17  Score=137.65  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLS-------------------IDH-KTVKAQIWDTAG   73 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~G   73 (224)
                      ++|+++|.+|||||||+|+|.+........+  |.........+.                   +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763222222  111122211111                   122 357899999999


Q ss_pred             hhhh----hhhhH---hHhcCCCEEEEEEeCCCh
Q 027382           74 QERY----RAVTS---AYYRGAVGAMLVYDMTKR  100 (224)
Q Consensus        74 ~~~~----~~~~~---~~~~~~d~vi~v~d~~~~  100 (224)
                      ....    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    22222   346899999999999874

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.68  E-value=1.4e-16  Score=136.06  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=89.4

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------C---ccCCcceeeEEEEEEECCeEEEEE
Q 027382            8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------D---SKATIGVEFQTKTLSIDHKTVKAQ   67 (224)
Q Consensus         8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~~   67 (224)
                      ++....+.-||+|+|+.++|||||..+|+...-..                 .   -....|+++....+.+.+.++.++
T Consensus        24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iN  103 (548)
T 3vqt_A           24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVN  103 (548)
T ss_dssp             HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEE
T ss_pred             hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEE
Confidence            34455677899999999999999999997422110                 0   011124555555555666778999


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      |+||||+.+|.......++-+|++|+|+|+.+.-......-|......    ++|.++++||+|.+.
T Consensus       104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----ATPVMTFVNKMDREA  166 (548)
T ss_dssp             EECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCCEEEEEECTTSCC
T ss_pred             EEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh----CCceEEEEecccchh
Confidence            999999999999999999999999999999986555555555333332    799999999999854

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=8.6e-17  Score=122.22  Aligned_cols=155  Identities=11%  Similarity=0.084  Sum_probs=96.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCccee--------------eEEEEEEE----------------CCe
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVE--------------FQTKTLSI----------------DHK   62 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~   62 (224)
                      ....+|+++|.+|||||||+++|+...........+..+              .....+..                ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            356789999999999999999998752211000000000              00011111                112


Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      ...+.+|||+|+-....   .+....+.+++|+|+++....  ...+...+      +.|+++|+||+|+.+......++
T Consensus       108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHH
Confidence            35788999999511111   111257889999998764321  11111111      47789999999985432345666


Q ss_pred             HHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          143 AQEFAQRE--NLFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       143 ~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      +.+++...  +++++++||++|.|++++|+++.+.+..
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            77766654  4689999999999999999999877644

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.63  E-value=7.8e-15  Score=118.59  Aligned_cols=144  Identities=18%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEECCe---------------EEEEEEEeCCChhhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQERYR   78 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~   78 (224)
                      ++|+++|.+|||||||+|+|.+........+  |...+..  .+.+.+.               ...+.+||+||.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999998764332222  2222222  2233321               2579999999976432


Q ss_pred             -------hhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHH------------------------------
Q 027382           79 -------AVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLD------------------------------  111 (224)
Q Consensus        79 -------~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~------------------------------  111 (224)
                             ......++.+|++++|+|+++.          +.++.+..+..                              
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                   2233457899999999999862          22222221110                              


Q ss_pred             ----------HHHh-------------------cC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382          112 ----------ELRG-------------------HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE  161 (224)
Q Consensus       112 ----------~~~~-------------------~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (224)
                                .+.+                   .. ....|+++++|+.|..-........+++++...+++++++||+.
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      0111                   11 13599999999999642122335667888888899999999653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.63  E-value=1.2e-16  Score=129.91  Aligned_cols=159  Identities=13%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cCCc--------------------------------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------KATI--------------------------------------   48 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~--------------------------------------   48 (224)
                      ....+|+|+|.+|||||||+|+|++..+.+..      .|+.                                      
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999998763221      1110                                      


Q ss_pred             -----ceeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHhcCCCEEEE-EEeCCChhhHHHHHH
Q 027382           49 -----GVEFQTKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAML-VYDMTKRQSFDHMAR  108 (224)
Q Consensus        49 -----~~~~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~-v~d~~~~~s~~~~~~  108 (224)
                           +.......+.+. .....+.+|||||..             .+..+...++..++.+|+ |.+++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 000000001111 113579999999942             445667777766665554 556554222222222


Q ss_pred             HHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q 027382          109 WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE--FAQREN-LFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       109 ~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ++..+   .+.+.|+++|+||+|+.+........++.  +....+ .+++++||+++.|++++++.+..
T Consensus       189 i~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHH---CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHh---CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            33333   33478999999999996543322222111  000112 24678999999999999998876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=3.4e-16  Score=139.76  Aligned_cols=123  Identities=19%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------cc--CCcceeeEEEEEE----------
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----------------SK--ATIGVEFQTKTLS----------   58 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~--~~~~~~~~~~~~~----------   58 (224)
                      .++.+.+...||+|+|+.++|||||+++|+.......                ..  .|+..........          
T Consensus        11 ~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~   90 (842)
T 1n0u_A           11 SLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK   90 (842)
T ss_dssp             HHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred             HHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccc
Confidence            3454567789999999999999999999987421100                00  1111111111121          


Q ss_pred             --ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           59 --IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        59 --~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                        .++..+.+.+|||||+..|...+..+++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+.
T Consensus        91 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             ccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence              13347899999999999999999999999999999999999877776655654433    268999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.60  E-value=1.2e-17  Score=127.50  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=90.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE------------EEEEEEC-Ce-----------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ------------TKTLSID-HK-----------------   62 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~-----------------   62 (224)
                      ...++|+|+|.+|||||||+++|+...+...+.++++.++.            ...+.++ +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999999986544333333322221            1111111 10                 


Q ss_pred             --EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382           63 --TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        63 --~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                        ...+.++|++|.-...   ..+-...+..+.++|.........  .+...+      ..|.++|+||+|+.+......
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~  184 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADI  184 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCH
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHH
Confidence              1134555555521000   011112344556666432111100  000111      367799999999865333456


Q ss_pred             HHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          141 EDAQEFAQRE--NLFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       141 ~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      +++.+++...  +++++++||++|.|++++|+.+.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            7777777764  5789999999999999999999877643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=2e-16  Score=128.68  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      .+.+.+|||||..   ......+..+|++++|+|+...+....+..      .  -...|+++|+||+|+...... ...
T Consensus       171 ~~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~--~~~~p~ivVlNK~Dl~~~~~~-~~~  238 (355)
T 3p32_A          171 GFDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK------G--VLELADIVVVNKADGEHHKEA-RLA  238 (355)
T ss_dssp             TCCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT------T--SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred             CCCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH------h--HhhcCCEEEEECCCCcChhHH-HHH
Confidence            4678999999943   233445689999999999876544322211      0  124689999999998532111 111


Q ss_pred             HHHHHHH---c-------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          143 AQEFAQR---E-------NLFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       143 ~~~~~~~---~-------~~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ..++...   .       +.+++++||++|.|++++++.+.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222221   1       4689999999999999999999887755

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.59  E-value=5e-16  Score=135.02  Aligned_cols=115  Identities=19%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--CC----Ccc----------CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF--SV----DSK----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~--~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      .||+|+|+.++|||||..+|+...-  ..    ...          ...|+++....+.+.+.++.++++|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999975211  10    000          0115666666666778888999999999999999


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      .....++-+|++|+|+|+.+.-......-|......    ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence            999999999999999999985444443444333333    688999999999753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=2.9e-15  Score=127.97  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=82.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEEEECCe-----------------------E--
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTLSIDHK-----------------------T--   63 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~--   63 (224)
                      .+...+|+|+|.+|+|||||+|+|++..+.   ....++.  +.... +..+..                       .  
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEE-EECCSSSEEECCC------------------C
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEE-EEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            456789999999999999999999998763   2333322  11100 000000                       0  


Q ss_pred             ---------------EEEEEEeCCChhh-----------hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 027382           64 ---------------VKAQIWDTAGQER-----------YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA  117 (224)
Q Consensus        64 ---------------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~  117 (224)
                                     ..+.+|||||...           +......++..+|++|+|+|+++....+....++..+..  
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--  216 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--  216 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence                           2588999999764           456677888999999999999875445555666665543  


Q ss_pred             CCCCcEEEEEeCCCCCC
Q 027382          118 DKNIVIMLIGNKCDLGS  134 (224)
Q Consensus       118 ~~~~p~ilv~nK~D~~~  134 (224)
                       .+.|+++|+||+|+.+
T Consensus       217 -~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             -CGGGEEEEEECGGGSC
T ss_pred             -cCCCEEEEEECCCccC
Confidence             2588999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=1.6e-14  Score=117.29  Aligned_cols=151  Identities=16%  Similarity=0.107  Sum_probs=92.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEECC-------------------eEEEEEEEeCCCh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSIDH-------------------KTVKAQIWDTAGQ   74 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~   74 (224)
                      ++|+++|.+|||||||+|+|.+........+  |...+....  .+..                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999998643222111  111222221  2221                   3457999999996


Q ss_pred             hhh-------hhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHH---H------------------------
Q 027382           75 ERY-------RAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARW---L------------------------  110 (224)
Q Consensus        75 ~~~-------~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~---~------------------------  110 (224)
                      ...       .......++.+|++++|+|+++.          +.+..+..+   +                        
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            543       22234457899999999999851          111111110   0                        


Q ss_pred             ------------HHHHhc-------------------C-CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEE
Q 027382          111 ------------DELRGH-------------------A-DKNIVIMLIGNKCDL--GSL-RAVPTEDAQEFAQRENLFFM  155 (224)
Q Consensus       111 ------------~~~~~~-------------------~-~~~~p~ilv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~  155 (224)
                                  ..+.+.                   . ....|+++++||.|.  .+. +......+++++...+++++
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv  239 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV  239 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence                        001110                   0 123799999999974  221 12345678888888899999


Q ss_pred             EEcCCCCCCHHHH
Q 027382          156 ETSALEATNVETA  168 (224)
Q Consensus       156 ~~s~~~~~~v~~~  168 (224)
                      ++||+.+.++.++
T Consensus       240 ~iSAk~E~el~eL  252 (368)
T 2dby_A          240 VVSARLEAELAEL  252 (368)
T ss_dssp             EECHHHHHHHHTS
T ss_pred             EeechhHHHHHHh
Confidence            9999875544433

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.55  E-value=2.8e-14  Score=125.51  Aligned_cols=119  Identities=14%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC--------CCCC--c------cCCcceeeEEEEEEEC-------CeEEEEE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNE--------FSVD--S------KATIGVEFQTKTLSID-------HKTVKAQ   67 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~--------~~~~--~------~~~~~~~~~~~~~~~~-------~~~~~~~   67 (224)
                      +.++.-||+|+|+.++|||||..+|+...        ....  +      ....|+++....+.+.       +..+.++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            34678899999999999999999997421        1000  0      1112444444443332       2368999


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      ++|||||.+|.......++-+|++|+|+|+.+.-......-|......    ++|.++|+||+|..
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence            999999999999999999999999999999986555544455444444    69999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.54  E-value=2.8e-15  Score=121.48  Aligned_cols=104  Identities=10%  Similarity=-0.008  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      .+.+.++||+|...   ........+|++++|+|++.+.....+..   .+     ...|.++|+||+|+.+.... ...
T Consensus       166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            45789999999531   12445779999999999987543222211   11     14578999999998531100 011


Q ss_pred             HHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          143 AQEFAQ----------RENLFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       143 ~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      ..++..          .+..+++.+|+++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222221          123568999999999999999999877643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.2e-13  Score=108.52  Aligned_cols=155  Identities=16%  Similarity=0.113  Sum_probs=97.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAY   84 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~   84 (224)
                      .+...+|+++|.|+||||||+|+|.+........+..+.+.....+.+  .+..+.++|+||...       ........
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~--~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE--TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe--CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            345678999999999999999999997755555554344443334444  446789999999321       12223445


Q ss_pred             hcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcCCeEE
Q 027382           85 YRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGS--------LRAVPTEDAQEFAQRENLFFM  155 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~  155 (224)
                      ++.+|++++|+|+++|.. .+.+...+..+.... ...|.+++.||.|...        ....+.++++.+...+.+.--
T Consensus       147 i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             HHhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            789999999999998643 333333333322111 3567888999999732        134566777777776655322


Q ss_pred             EEcCCCCCCHHHHH
Q 027382          156 ETSALEATNVETAF  169 (224)
Q Consensus       156 ~~s~~~~~~v~~~~  169 (224)
                      ++-...+...+++.
T Consensus       226 pv~~~~nv~eddl~  239 (376)
T 4a9a_A          226 EIAFRCDATVDDLI  239 (376)
T ss_dssp             EEEECSCCCHHHHH
T ss_pred             CeeecccCCHHHHH
Confidence            22223344445443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.48  E-value=1.2e-13  Score=107.40  Aligned_cols=108  Identities=13%  Similarity=-0.027  Sum_probs=66.7

Q ss_pred             EEEEEEeCCChhhhhhhhH------hHhcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDMTKR---QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      +.+.+|||||.........      ..+.. +++++++|+...   ..+.....+......  ..+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence            5799999999876543322      23456 888889987542   222222111111111  12589999999999864


Q ss_pred             CCCCCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          135 LRAVPTEDAQEF----------------------------AQREN--LFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       135 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ...  .+++.++                            +...+  .+++++||+++.|++++++++.+.+
T Consensus       186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            221  1111111                            23333  4799999999999999999988665

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.47  E-value=1.6e-14  Score=116.76  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC--H
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP--T  140 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~  140 (224)
                      .+.+.+|||||......   .....+|++++|+|++..+....+..   ..     .+.|.++|+||+|+.+.....  .
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            46799999999654332   24689999999999976533211111   01     136789999999986321110  0


Q ss_pred             HHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          141 EDAQEFAQRE-------NLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       141 ~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +++++.....       ..+++++||++|.|++++++.+.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1222222222       346899999999999999999988664

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.45  E-value=4e-13  Score=117.66  Aligned_cols=159  Identities=13%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCccee---------------------------------------
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVE---------------------------------------   51 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~---------------------------------------   51 (224)
                      .-...+|+|+|.+++|||||+|+|++..+.+ ....++...                                       
T Consensus        48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            3466799999999999999999999977622 211111000                                       


Q ss_pred             ---------eEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHh-cCCCEEEEEEeCCChhhHHHHH
Q 027382           52 ---------FQTKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYY-RGAVGAMLVYDMTKRQSFDHMA  107 (224)
Q Consensus        52 ---------~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~  107 (224)
                               .....+.+. -....+.++||||-.             .+..+...++ ..+|++++|+|++.........
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     000011110 011247899999932             2334444454 5789999999998743333322


Q ss_pred             HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382          108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR----EN-LFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      .++..+.   ..+.|+++|+||+|+.+....... +.+ ...    .+ .+++.+||++|.|++++++.+...
T Consensus       208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            3333343   336899999999999754433222 111 111    12 246778999999999999888763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.37  E-value=4.5e-13  Score=108.00  Aligned_cols=104  Identities=12%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      .+.+.++||+|....   .......+|.+++|+|+...+....+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            467999999995422   12345789999999998754322111111   11     23457778999974322111122


Q ss_pred             HHHHHHH----c------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          143 AQEFAQR----E------NLFFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       143 ~~~~~~~----~------~~~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      .+++...    .      ..+++.+|++++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3333321    1      356889999999999999999887653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.37  E-value=7.2e-13  Score=105.29  Aligned_cols=97  Identities=11%  Similarity=0.011  Sum_probs=78.9

Q ss_pred             hhhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027382           74 QERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-TEDAQEFAQREN  151 (224)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~  151 (224)
                      ++.+..+.+.+++++|++++|+|+++++ ++..+.+|+..+..   .++|+++|+||+|+.+...+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777888999999999999999986 88888899887765   379999999999996432111 345566777788


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHH
Q 027382          152 LFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus       152 ~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      .+++++||++|.|++++|..+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            8999999999999999998764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=3.1e-11  Score=98.65  Aligned_cols=89  Identities=12%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCCh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQ   74 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~   74 (224)
                      ..+...+|+++|.+|||||||+|+|.+... .....|+.+.....-.+.+.+.               ...+.+||+||.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            344567899999999999999999999765 4444443333333333444431               136899999993


Q ss_pred             h-------hhhhhhHhHhcCCCEEEEEEeCCC
Q 027382           75 E-------RYRAVTSAYYRGAVGAMLVYDMTK   99 (224)
Q Consensus        75 ~-------~~~~~~~~~~~~~d~vi~v~d~~~   99 (224)
                      .       .+...+...++.+|++++|+|+.+
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       233345566789999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.33  E-value=1.4e-12  Score=96.47  Aligned_cols=103  Identities=8%  Similarity=-0.013  Sum_probs=69.2

Q ss_pred             CCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHH----HHHhcC-CCCCcEEEEEeCC-CCCCCCCCCHHHHH
Q 027382           71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD----ELRGHA-DKNIVIMLIGNKC-DLGSLRAVPTEDAQ  144 (224)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~----~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~  144 (224)
                      .+|++.++.+|..|+.++|++|||+|.+|.+-++ .+..+.    .+.+.. ..+.|++|++||. |++  ...+..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence            3478899999999999999999999999975443 444332    222221 2578999999995 675  445666665


Q ss_pred             HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          145 EFAQR----ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       145 ~~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +...-    ....+..|||.+|+|+.+.++|+...+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            54332    233578999999999999999998655

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.29  E-value=3.5e-12  Score=104.12  Aligned_cols=91  Identities=12%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE   75 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~   75 (224)
                      .....++|+++|.+|||||||+|+|.+........++.+.......+.+.+.               ...+.+||+||..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            3445688999999999999999999987664444443333333333334321               2359999999976


Q ss_pred             hhhh-------hhHhHhcCCCEEEEEEeCCChh
Q 027382           76 RYRA-------VTSAYYRGAVGAMLVYDMTKRQ  101 (224)
Q Consensus        76 ~~~~-------~~~~~~~~~d~vi~v~d~~~~~  101 (224)
                      ....       .+..+++.+|++++|+|+++.+
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            5432       4567789999999999998643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.21  E-value=2.5e-11  Score=94.17  Aligned_cols=104  Identities=8%  Similarity=0.004  Sum_probs=73.7

Q ss_pred             CCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHH---HHHHHHHHHHhcC-CCCCcEEEEEeC-CCCCCCCCCCHHHHHH
Q 027382           71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD---HMARWLDELRGHA-DKNIVIMLIGNK-CDLGSLRAVPTEDAQE  145 (224)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~~~  145 (224)
                      .+|++.++.+|..|+.++|++|||+|.+|.+.++   ++.+....+.+.. ..+.|++|++|| .|++  ...+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence            4678899999999999999999999999976543   2222222232221 247999999996 6875  3456666655


Q ss_pred             HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          146 FAQR----ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       146 ~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ...-    ....+..|||.+|+|+.+.++|+.+.+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            4332    223478999999999999999998766

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=3e-09  Score=86.64  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQ  148 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~  148 (224)
                      ..+.|.+++..+.+.+|++++|+|+++++     ..|...+.+... +.|+++|+||+|+.+. ....++++++    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            45788999999999999999999999853     334444444333 6899999999999653 3344444444    56


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382          149 RENL---FFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ..+.   .++.+||++|.|++++++.+...
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999888653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=7.7e-11  Score=96.09  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC-----C-CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN-----E-FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR--------AVT   81 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~   81 (224)
                      .+|+++|.+|+|||||+|+|++.     . ......+  +++.....+.+...   +.++||||-....        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986     2 2122222  34444444444432   7899999932111        112


Q ss_pred             HhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382           82 SAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus        82 ~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      ..++  +..+.++++++....-.+..+..    +......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            2222  67899999999842111111110    11122346899999999998542222 23344455556665655555


Q ss_pred             CCC
Q 027382          160 LEA  162 (224)
Q Consensus       160 ~~~  162 (224)
                      .+.
T Consensus       313 ~~~  315 (369)
T 3ec1_A          313 RYA  315 (369)
T ss_dssp             GGT
T ss_pred             hhh
Confidence            443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.93  E-value=9e-10  Score=92.79  Aligned_cols=152  Identities=14%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh------cCCCCCC----ccCC-----------cceeeEEEEEE-------------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFA------RNEFSVD----SKAT-----------IGVEFQTKTLS-------------   58 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~------~~~~~~~----~~~~-----------~~~~~~~~~~~-------------   58 (224)
                      .....|+++|.+||||||++++|.      +......    +.+.           .+..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      3322110    0000           01111110000             


Q ss_pred             ECCeEEEEEEEeCCChhhhh-hhh---HhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCC
Q 027382           59 IDHKTVKAQIWDTAGQERYR-AVT---SAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCD  131 (224)
Q Consensus        59 ~~~~~~~~~l~D~~G~~~~~-~~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D  131 (224)
                      +....+.+.++||||..... .++   ...  ...+|.+++|+|+......   ......+.+    .+|+ ++|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCc
Confidence            00134679999999954221 111   111  2378999999999874321   122222332    2554 88899999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 027382          132 LGSLRAVPTEDAQEFAQRENLFF------------------METSALEATN-VETAFLTVLTE  175 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~i~~~  175 (224)
                      ......    .+.......+.|+                  +.+|+.+|.| +.++++++.+.
T Consensus       252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            863221    1222333444442                  2357888888 88888777654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.85  E-value=1.5e-08  Score=83.49  Aligned_cols=62  Identities=24%  Similarity=0.507  Sum_probs=36.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEEC--CeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSID--HKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~D~~G~   74 (224)
                      ...++++|+|++|+|||||++.|++..+......  ..+.......+...  .....+.++|++|-
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            3456799999999999999999998754211111  11222222222222  22347889999873

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.84  E-value=1.4e-10  Score=94.44  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhH
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFS-----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR--------AVTS   82 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~   82 (224)
                      .+|+++|.+|+|||||+|+|++....     .......+++.....+.+...   +.++||||-....        ....
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            57999999999999999999986311     111122244444444444333   7899999943221        1111


Q ss_pred             hH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHHcCCeEEEEc
Q 027382           83 AY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EFAQRENLFFMETS  158 (224)
Q Consensus        83 ~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~s  158 (224)
                      .+  .+..+.++++++....-....+..    +......+.|+++++||.|......  .+... .+.+..+..+++.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence            11  257788999998742111111110    1112234689999999999854222  33333 44445555444444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.82  E-value=3.5e-08  Score=76.96  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-------CCcceeeEEEEEEECC--eEEEEEEEeCCChhh---------
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSK-------ATIGVEFQTKTLSIDH--KTVKAQIWDTAGQER---------   76 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~---------   76 (224)
                      .++++|+|+.|+|||||++.|++...+....       ...........+....  -...+.++|++|-..         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5899999999999999999999854322110       0000001111111111  123678999987211         


Q ss_pred             -hhhh----hHh--------------HhcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           77 -YRAV----TSA--------------YYRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        77 -~~~~----~~~--------------~~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                       ....    ...              .+..+++.++++|... +-.... ...+..+.+    ..++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence             0000    000              1234688899998653 111111 233444443    28899999999975321


Q ss_pred             CC--CHHHHHHHHHHcCCeEEE
Q 027382          137 AV--PTEDAQEFAQRENLFFME  156 (224)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~  156 (224)
                      +.  ....+.+....+++.+++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            11  011223334456666554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.78  E-value=1.2e-08  Score=83.07  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027382           73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQ  148 (224)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~  148 (224)
                      .++.|.+.+..++..++++++|+|++++.+     .|...+.+... +.|+++|+||+|+.+. ....+.+.++    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            477899999999999999999999999663     23222333222 6899999999999653 2334444444    55


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382          149 RENL---FFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            5666   68999999999999999888654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=1.3e-08  Score=79.89  Aligned_cols=102  Identities=13%  Similarity=0.038  Sum_probs=70.7

Q ss_pred             EEeCCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027382           68 IWDTAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ  144 (224)
Q Consensus        68 l~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~  144 (224)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+.+++        .+.|.++|+||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34578876 44556777889999999999999987664  344443        268999999999996411  112233


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          145 EFAQRENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       145 ~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      ++.+..+.+++.+||+++.|+.+++..+.+.+...
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44455678899999999999999999887766544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.61  E-value=4.4e-07  Score=74.72  Aligned_cols=157  Identities=11%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhh-----HhHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVT-----SAYYR   86 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~-----~~~~~   86 (224)
                      ....++|+|++|+|||||+|.|.+...+.... ...+.......+.. ....-.+.++|++|-.......     ...+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            44579999999999999999999854322211 11111110000111 1111257899999843211111     11233


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HHcC
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-------SLRAVPTEDA----QEFA----QREN  151 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~  151 (224)
                      ..+.+++ ++.....  ..-......+...   +.|+++|.||.|+.       .-......++    +++.    .+.+
T Consensus       148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK--KNDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC--HHHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc--HHHHHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4465554 6665211  1111122222221   58999999999862       1112233333    3333    1222


Q ss_pred             ---CeEEEEcC--CCCCCHHHHHHHHHHHH
Q 027382          152 ---LFFMETSA--LEATNVETAFLTVLTEI  176 (224)
Q Consensus       152 ---~~~~~~s~--~~~~~v~~~~~~i~~~i  176 (224)
                         ..++.+|+  .++.|++++.+.+.+.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence               25788999  45556988888877665

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.58  E-value=4.4e-08  Score=76.89  Aligned_cols=58  Identities=22%  Similarity=0.427  Sum_probs=36.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      +..++|+++|.+|+|||||+|+|.+........ ..+.+.....+.+..   .+.++||||-
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCc
Confidence            467899999999999999999999876432221 123333333333322   5789999994

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.50  E-value=1.6e-07  Score=77.70  Aligned_cols=136  Identities=18%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc------CCCCC----CccC-----------CcceeeEEEEEEEC------------
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR------NEFSV----DSKA-----------TIGVEFQTKTLSID------------   60 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~------~~~~~----~~~~-----------~~~~~~~~~~~~~~------------   60 (224)
                      .+..|+++|.+|+||||++..|..      .....    .+.+           ..+..+.......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998874      11100    0000           00111111000000            


Q ss_pred             -CeEEEEEEEeCCChhhh-----hhhh-HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           61 -HKTVKAQIWDTAGQERY-----RAVT-SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        61 -~~~~~~~l~D~~G~~~~-----~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                       ...+.+.++||+|....     ..+. ......+|.+++|+|+.......   .....+.+.   -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence             01267899999994321     1111 11233689999999998643322   222334332   23467889999975


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382          134 SLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      .    ....+.......+.|+..++.
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc
Confidence            2    345566677778888776664

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.49  E-value=4.9e-08  Score=75.80  Aligned_cols=56  Identities=23%  Similarity=0.330  Sum_probs=35.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE   75 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   75 (224)
                      ++++++|.+|+|||||+|+|.+...... .++.|.+.....+.+.   ..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCcc
Confidence            7999999999999999999998765322 2222444333333332   257899999954

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.33  E-value=1.9e-06  Score=71.44  Aligned_cols=133  Identities=18%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC------CC-CC---ccCC-----------cceeeEEE--------EE--E-E-C
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE------FS-VD---SKAT-----------IGVEFQTK--------TL--S-I-D   60 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~------~~-~~---~~~~-----------~~~~~~~~--------~~--~-~-~   60 (224)
                      ....|+++|.+|+||||++..|....      .. ..   +.+.           .+..+...        .+  . + .
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            34679999999999999999987621      10 00   0000           00000000        00  0 0 1


Q ss_pred             CeEEEEEEEeCCChhhhhh-h---hHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC-c-EEEEEeCCCC
Q 027382           61 HKTVKAQIWDTAGQERYRA-V---TSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI-V-IMLIGNKCDL  132 (224)
Q Consensus        61 ~~~~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~  132 (224)
                      ...+.+.++||||...... +   ....  +..+|.+++|+|+.....   .......+..    .. | ..+|+||+|.
T Consensus       178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDG  250 (432)
T ss_dssp             TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSS
T ss_pred             hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCC
Confidence            1346789999999543211 1   1111  226899999999875432   2222223332    34 5 8899999997


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382          133 GSLRAVPTEDAQEFAQRENLFFMET  157 (224)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~  157 (224)
                      ..    ....+..+....+.++..+
T Consensus       251 ~~----~~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          251 SA----KGGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             CS----TTHHHHHHHHHSSCCEEEE
T ss_pred             cc----chHHHHHHHHHHCCCEEEe
Confidence            42    1223445666777776555

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.30  E-value=8.3e-07  Score=73.42  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc------CCCCC----CccC-----------CcceeeEEEEE-------------EE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR------NEFSV----DSKA-----------TIGVEFQTKTL-------------SI   59 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~------~~~~~----~~~~-----------~~~~~~~~~~~-------------~~   59 (224)
                      ....|+++|++||||||++..|..      .....    .+.+           ..+........             ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            356789999999999999998873      11100    0000           00111110000             00


Q ss_pred             CCeEEEEEEEeCCChhh--h----hhhhHh--HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           60 DHKTVKAQIWDTAGQER--Y----RAVTSA--YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        60 ~~~~~~~~l~D~~G~~~--~----~~~~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                      ....+.+.++||||...  .    -.....  .....+.+++|+|+........   ....+.+.   -.+..+|+||.|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD  249 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMD  249 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEeccc
Confidence            11246788999999533  1    111111  1225689999999986433222   22333322   234688999999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382          132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      ..    .....+.......+.|+..++.  |+++
T Consensus       250 ~~----a~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          250 GT----AKGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             GC----SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             cc----ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            75    2455667777778899877765  5544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.29  E-value=8.7e-07  Score=76.00  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=40.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTL--SI-DHKTVKAQIWDTAGQE   75 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~l~D~~G~~   75 (224)
                      ....++|+|+|.+|+|||||+|+|++........ .+.+.+......  .+ ......+.++||||-.
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            4578899999999999999999999976421111 111222222111  11 2234578999999943

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.23  E-value=2e-06  Score=67.85  Aligned_cols=93  Identities=15%  Similarity=0.030  Sum_probs=57.3

Q ss_pred             eEEEEEEEeCCChhh--hh-hhhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCC
Q 027382           62 KTVKAQIWDTAGQER--YR-AVTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDL  132 (224)
Q Consensus        62 ~~~~~~l~D~~G~~~--~~-~~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~  132 (224)
                      ..+.+.++||||...  .. .+..     .....+|.+++|+|+....   ........+.+    ..+ ..+|.||.|.
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDG  251 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCC
Confidence            346789999999655  21 1111     1244789999999987432   22222233332    244 6788999997


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382          133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      ..    ....+.......+.|+..++  +|+++++
T Consensus       252 ~~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          252 TA----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             CT----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             Cc----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            42    34456677788888877765  4555543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.17  E-value=7.3e-07  Score=69.16  Aligned_cols=93  Identities=13%  Similarity=0.064  Sum_probs=61.3

Q ss_pred             CCChhhh-hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382           71 TAGQERY-RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR  149 (224)
Q Consensus        71 ~~G~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~  149 (224)
                      .||+... .......+.++|+++.|+|+.++.+.....  +. +   .  +.|.++|+||+|+.+..  ..+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            4676532 345677789999999999999876654211  01 1   1  68999999999996421  11223445555


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382          150 ENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus       150 ~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      .+.++ .+|++++.|+++++..+..
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67788 9999999999988877654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.12  E-value=6.2e-06  Score=71.39  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS   41 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~   41 (224)
                      .|+|+|+.|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            3999999999999999999987533

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.02  E-value=1.2e-06  Score=69.40  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeE
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQRENLFF  154 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  154 (224)
                      ..+.+..+.++|.+++|+|+.+|.. ...+.+++.....   .++|.++|+||+|+.+....  ..+...++....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445557899999999999997653 4445555544433   26889999999999752210  0233444555567889


Q ss_pred             EEEcCCCCCCHHHHHH
Q 027382          155 METSALEATNVETAFL  170 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~  170 (224)
                      +.+|+.++.|+++++.
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            9999988877665543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.90  E-value=2e-05  Score=62.95  Aligned_cols=143  Identities=13%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC---------------------CcceeeEEEEEEEC-----------
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA---------------------TIGVEFQTKTLSID-----------   60 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-----------   60 (224)
                      +..--++++|+.||||||+++.|.+...+.....                     ..+..+........           
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            3456789999999999999999876321110000                     00110100000000           


Q ss_pred             --CeEEEEEEEeCCChhhhhhh----hHh--HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           61 --HKTVKAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        61 --~~~~~~~l~D~~G~~~~~~~----~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                        ...+.+.++|++|.......    ...  ..-..|-.+++.|+....   .+......+.+..   -..++++||.|.
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~  280 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDA  280 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCC
Confidence              01234667999995322111    111  112478899999976542   3333333344322   123677899996


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382          133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      ..    ....+.......+.|+..++  +|+++++
T Consensus       281 ~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          281 DA----RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CS----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             cc----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            32    23446677777888877776  5655543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.83  E-value=1.4e-06  Score=73.20  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------H
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVT--------S   82 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~   82 (224)
                      ...+.|+++|.+||||||+.++|...... ...++.+...........+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999754321 1111111000000000011113346789888733  23332        5


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhc
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH  116 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  116 (224)
                      .++...++.++|+|.++. +......|+..+.+.
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            566667888999999985 455555666666543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.73  E-value=0.00036  Score=57.95  Aligned_cols=27  Identities=30%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..+..-|.|+|.+++|||+|+|+|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            346788999999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.71  E-value=7.2e-05  Score=60.35  Aligned_cols=82  Identities=12%  Similarity=0.068  Sum_probs=54.9

Q ss_pred             HhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH---HHHHcCCeEEEEcC
Q 027382           84 YYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE---FAQRENLFFMETSA  159 (224)
Q Consensus        84 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~s~  159 (224)
                      ...++|.+++|... +|. +...+.+++......   ++|.++|+||+|+.+...  .+..++   .....+.+++.+|+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence            46899999988665 454 344455555444332   578899999999964211  111333   33456788999999


Q ss_pred             CCCCCHHHHHHH
Q 027382          160 LEATNVETAFLT  171 (224)
Q Consensus       160 ~~~~~v~~~~~~  171 (224)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999887654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.57  E-value=0.00011  Score=60.83  Aligned_cols=80  Identities=18%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             EEEEEEEeCCChhhhh-hhhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYR-AVTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSL  135 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~-~~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~  135 (224)
                      .+.+.++||||..... ....     .....++.+++|+|+......   ......+..    .++ .-+|+||.|... 
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~-  254 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDA-  254 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSS-
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCc-
Confidence            4679999999954321 1111     224478999999998753222   222223332    233 346889999743 


Q ss_pred             CCCCHHHHHHHHHHcCCe
Q 027382          136 RAVPTEDAQEFAQRENLF  153 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~  153 (224)
                      +.   ..+..+....+.|
T Consensus       255 ~~---g~~l~i~~~~~~P  269 (433)
T 2xxa_A          255 RG---GAALSIRHITGKP  269 (433)
T ss_dssp             CC---THHHHHHHHHCCC
T ss_pred             cH---HHHHHHHHHHCCC
Confidence            11   2344555555655

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.46  E-value=0.0009  Score=49.76  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             EEEEEEEeCCCh-hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH
Q 027382           63 TVKAQIWDTAGQ-ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE  141 (224)
Q Consensus        63 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~  141 (224)
                      .+.+.++|+|+. ..  ......+..+|.+|+++..+ ..+...+...++.+.+..  +.++.+|.|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            467899999986 32  23455677899999998775 467777777777776633  4568899999986420  1234


Q ss_pred             HHHHHHHHcCCeEE
Q 027382          142 DAQEFAQRENLFFM  155 (224)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (224)
                      ++.++.++.+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            56666666665543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.39  E-value=9.1e-05  Score=53.84  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +++++|++|+|||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999988643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.30  E-value=0.00019  Score=57.87  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.27  E-value=0.00014  Score=52.74  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4799999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.27  E-value=5.6e-05  Score=59.76  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|++|||||||+|.|.+...
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC---
T ss_pred             EEEEECCCCCCHHHHHHHhccccc
Confidence            689999999999999999987543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.21  E-value=0.00018  Score=53.18  Aligned_cols=21  Identities=48%  Similarity=0.645  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .++|+|++|||||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.12  E-value=5.4e-05  Score=55.41  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.11  E-value=0.00094  Score=52.67  Aligned_cols=23  Identities=43%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|++|||||||+|.|. ...
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hhh
Confidence            47899999999999999999 543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.11  E-value=0.00025  Score=52.26  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4799999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.09  E-value=0.00028  Score=51.47  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.|+++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.08  E-value=0.00028  Score=52.39  Aligned_cols=23  Identities=43%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|+|+.|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.07  E-value=0.00034  Score=50.32  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.|+++|++||||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.06  E-value=0.0003  Score=52.85  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|+|+.|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.06  E-value=0.00028  Score=50.77  Aligned_cols=20  Identities=45%  Similarity=0.571  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027382           17 KVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (224)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            37899999999999999755

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.04  E-value=0.00032  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998744

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.04  E-value=0.00088  Score=55.30  Aligned_cols=86  Identities=15%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCChhhhhh-hhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      .+.+.++||||...... ...     ...-.+|.+++|+|+...   ..+......+....   ....+|.||.|...  
T Consensus       180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~--  251 (425)
T 2ffh_A          180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDA--  251 (425)
T ss_dssp             TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCS--
T ss_pred             CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCcc--
Confidence            45789999999532211 111     112368899999998643   22222223333221   12466889999642  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 027382          137 AVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                        ....+.......+.|+..+.
T Consensus       252 --~~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 --RGGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEE
T ss_pred             --cHHHHHHHHHHHCCCEEEEe
Confidence              23345566677788866554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.03  E-value=0.00037  Score=53.14  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 027382           15 VFKVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~   36 (224)
                      .-.|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.01  E-value=0.00037  Score=51.41  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            34789999999999999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.98  E-value=0.0004  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.|+|+|++|||||||++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.95  E-value=0.00042  Score=51.48  Aligned_cols=27  Identities=30%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+....|+|+|++|||||||++.|.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.95  E-value=0.00044  Score=52.54  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.94  E-value=0.00047  Score=49.03  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.94  E-value=0.00046  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|+|+|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.88  E-value=0.00051  Score=51.78  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.87  E-value=0.00057  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+|+|++|||||||.+.|...
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.87  E-value=0.00059  Score=50.59  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ....|+|+|+.|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999998763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.86  E-value=0.00062  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.85  E-value=0.0022  Score=44.49  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            345899999999999999988654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.85  E-value=0.00058  Score=50.31  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.84  E-value=0.00064  Score=50.24  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35799999999999999999764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.83  E-value=0.00063  Score=49.54  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++++|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.82  E-value=0.00066  Score=50.76  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|+|||||++.+.+-.
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.81  E-value=0.00066  Score=52.42  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++|+|+.|||||||++.+.+-.
T Consensus        35 ~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.80  E-value=0.00074  Score=48.15  Aligned_cols=20  Identities=20%  Similarity=0.326  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 027382           16 FKVVLIGDSAVGKSQLLARF   35 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l   35 (224)
                      ..|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.80  E-value=0.00067  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.80  E-value=0.00068  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++|+|+.|||||||++.+.+-.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7999999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.79  E-value=0.00067  Score=49.73  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.78  E-value=0.00093  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.78  E-value=0.00086  Score=47.78  Aligned_cols=22  Identities=23%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+|.|.+||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.78  E-value=0.00071  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        36 ~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           36 TLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.76  E-value=0.00077  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.76  E-value=0.00054  Score=51.70  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 027382           17 KVVLIGDSAVGKSQLLARFA-RN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~-~~   38 (224)
                      -++|+|+.|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48999999999999999998 64

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.75  E-value=0.00076  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.75  E-value=0.00086  Score=51.16  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.74  E-value=0.0011  Score=51.38  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        40 ~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999987543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.74  E-value=0.0008  Score=51.93  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.74  E-value=0.00081  Score=51.94  Aligned_cols=22  Identities=45%  Similarity=0.539  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++|+|+.|||||||++.+.+-.
T Consensus        53 ~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Confidence            7899999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.73  E-value=0.00081  Score=51.21  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|+|||||++.+.+-.
T Consensus        35 ~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.73  E-value=0.00085  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.73  E-value=0.00087  Score=51.35  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|+.|+|||||++.+.+-
T Consensus        32 ~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999975

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.72  E-value=0.00084  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++|+|+.|||||||++.+.+-.
T Consensus        44 ~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.72  E-value=0.00089  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-++++|++|+|||||+++|+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.72  E-value=0.00093  Score=49.72  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.72  E-value=0.00079  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -.++++|++|+|||||++.+.+..
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999987643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.71  E-value=0.00087  Score=51.35  Aligned_cols=23  Identities=43%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.71  E-value=0.00098  Score=52.52  Aligned_cols=25  Identities=32%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFS   41 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~   41 (224)
                      .++++|++|||||||+|.|.+...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCcHHHHHHHhcccccc
Confidence            4789999999999999999876543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.69  E-value=0.00088  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            48999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.69  E-value=0.00096  Score=51.64  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++|+|+.|||||||++.+.+-
T Consensus        49 ~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           49 HAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999985

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.69  E-value=0.0013  Score=48.55  Aligned_cols=28  Identities=18%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .......|+|+|.+|||||||.+.|...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3445567999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.67  E-value=0.00093  Score=51.84  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37999999999999999998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.67  E-value=0.00099  Score=52.53  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.66  E-value=0.00098  Score=51.94  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++|+|+.|||||||++.+.+-.
T Consensus        50 ~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.65  E-value=0.00099  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+|+|+|.+||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999986

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.65  E-value=0.00067  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.65  E-value=0.001  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           34 LAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.64  E-value=0.0012  Score=48.57  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....+.|+|.|.+||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.64  E-value=0.0013  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.64  E-value=0.031  Score=46.36  Aligned_cols=63  Identities=30%  Similarity=0.369  Sum_probs=39.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc------------------CCCCCC---ccCCcceeeEEEEEEE---CCeEEEEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR------------------NEFSVD---SKATIGVEFQTKTLSI---DHKTVKAQ   67 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~   67 (224)
                      ..++.-|.|+|..++|||+|+|.|+.                  ..+...   ..-|.|+-.-...+.+   ++....+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            45788889999999999999996641                  122211   1123343332211111   56778999


Q ss_pred             EEeCCCh
Q 027382           68 IWDTAGQ   74 (224)
Q Consensus        68 l~D~~G~   74 (224)
                      ++||.|.
T Consensus       144 llDTEG~  150 (457)
T 4ido_A          144 LMDTQGT  150 (457)
T ss_dssp             EEEECCB
T ss_pred             EEeccCC
Confidence            9999993

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.63  E-value=0.001  Score=51.40  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.63  E-value=0.0051  Score=45.28  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++.|++|+|||+|++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.0011  Score=48.84  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.0013  Score=48.35  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.61  E-value=0.0012  Score=48.32  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.61  E-value=0.0013  Score=48.19  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=22.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ......|+|.|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999999865

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.60  E-value=0.0012  Score=49.41  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.60  E-value=0.0013  Score=48.88  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.60  E-value=0.0012  Score=48.67  Aligned_cols=25  Identities=24%  Similarity=0.186  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-.|+|+|++|||||||.+.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.59  E-value=0.0012  Score=47.35  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|++.|.+||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.59  E-value=0.0014  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.59  E-value=0.0017  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.58  E-value=0.0015  Score=51.83  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+...-|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            455677899999999999999998874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.57  E-value=0.0011  Score=49.58  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.56  E-value=0.0015  Score=47.46  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.56  E-value=0.0014  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.55  E-value=0.0015  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.051  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.55  E-value=0.0014  Score=49.39  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+...-|+|.|..|||||||++.|.+.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345567999999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.55  E-value=0.0016  Score=49.55  Aligned_cols=25  Identities=12%  Similarity=0.200  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...++|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.52  E-value=0.0014  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.51  E-value=0.0016  Score=47.18  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.00066  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.49  E-value=0.0018  Score=51.47  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...++-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.48  E-value=0.002  Score=46.84  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.48  E-value=0.0014  Score=52.77  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCchHHHHHHHHhcCCC
Confidence            78999999999999999998553

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.47  E-value=0.0019  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.46  E-value=0.0017  Score=48.44  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.45  E-value=0.0018  Score=49.34  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +....|+|+|+.|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445699999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.43  E-value=0.0015  Score=51.15  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.43  E-value=0.0016  Score=52.62  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|+.|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.43  E-value=0.0017  Score=52.28  Aligned_cols=23  Identities=39%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            78999999999999999987543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.42  E-value=0.0017  Score=50.48  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.41  E-value=0.002  Score=45.79  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.41  E-value=0.0011  Score=52.30  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            48999999999999999998743

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.41  E-value=0.0019  Score=46.32  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..++++|.+|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.40  E-value=0.0024  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.40  E-value=0.0019  Score=52.21  Aligned_cols=23  Identities=35%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++|+|+.|||||||++.+.+-..
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHhcCCC
Confidence            78999999999999999987543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.40  E-value=0.0019  Score=46.87  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.40  E-value=0.0018  Score=52.21  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHHCCCC
Confidence            78999999999999999998543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.40  E-value=0.0019  Score=52.52  Aligned_cols=23  Identities=48%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHHcCCC
Confidence            78999999999999999998553

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0032  Score=47.26  Aligned_cols=92  Identities=11%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEE-eC-CChhhhh----h-hhHhH
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW-DT-AGQERYR----A-VTSAY   84 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~-~G~~~~~----~-~~~~~   84 (224)
                      +++.+-|++.|.++.|||+|++++++......      .........-.+....+.|| |. +....+.    + .....
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~------~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EV   99 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCSSTGI------SIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPL   99 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCCCCSS------CEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHH
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccccccc------ccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHH
Confidence            34566667779999999999999998632111      11111222223444455443 53 3322221    1 11222


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHH
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARW  109 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~  109 (224)
                      ..-..|+|+|++...+...+.+.+.
T Consensus       100 R~viggII~~f~~p~~~~~~~i~~~  124 (233)
T 3uc9_A          100 RNVMAGIILITDIRQTKPQELLHQF  124 (233)
T ss_dssp             HHTEEEEEEEECHHHHCGGGTHHHH
T ss_pred             HHhcceEEEEEeCCCcchHHHHHHH
Confidence            2345789999986655444444433

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.39  E-value=0.0011  Score=46.52  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.39  E-value=0.0022  Score=50.25  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=22.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ......|+|+|++|||||||.+.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44667899999999999999988764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.39  E-value=0.0019  Score=52.17  Aligned_cols=23  Identities=39%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCchHHHHHHHHhcCCC
Confidence            78999999999999999988543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.38  E-value=0.0019  Score=52.22  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.38  E-value=0.0019  Score=48.48  Aligned_cols=23  Identities=22%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.38  E-value=0.00088  Score=49.01  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.36  E-value=0.0024  Score=46.89  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.35  E-value=0.0019  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.|+++|+.|||||||++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.34  E-value=0.002  Score=52.24  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCcHHHHHHHHHHcCCC
Confidence            78999999999999999997653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.34  E-value=0.0023  Score=50.56  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ....-|+|+|+.|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999999863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.34  E-value=0.0028  Score=45.90  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ....|+++|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.34  E-value=0.0021  Score=52.14  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            78999999999999999987543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.34  E-value=0.0021  Score=46.10  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +|+|+|.+||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.33  E-value=0.0023  Score=47.97  Aligned_cols=21  Identities=14%  Similarity=0.270  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.33  E-value=0.0023  Score=47.10  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +....|+|+|.+|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.32  E-value=0.0021  Score=50.21  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....-|++.|++||||||+.++|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.32  E-value=0.0021  Score=49.03  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.31  E-value=0.0019  Score=51.53  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.28  E-value=0.0021  Score=52.00  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.|.+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.28  E-value=0.0025  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356999999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.27  E-value=0.0024  Score=45.96  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|++.|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.27  E-value=0.0027  Score=48.55  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +....+.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.26  E-value=0.0024  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.26  E-value=0.0023  Score=50.40  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..--++++|+.||||||+++.|.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            344689999999999999999876

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.23  E-value=0.015  Score=46.51  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.23  E-value=0.002  Score=48.11  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.22  E-value=0.0027  Score=47.34  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.21  E-value=0.0028  Score=46.00  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.21  E-value=0.003  Score=45.37  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999988764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.19  E-value=0.0036  Score=45.30  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.19  E-value=0.0017  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCccHHHHHHHHHcCCC
Confidence            78999999999999999987543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.18  E-value=0.0026  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+++..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999998743

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.16  E-value=0.0027  Score=51.84  Aligned_cols=21  Identities=48%  Similarity=0.670  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|+.|||||||++.+.+-
T Consensus        50 ~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           50 VGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCChHHHHHHHHhCC
Confidence            799999999999999999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.16  E-value=0.0029  Score=46.74  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.15  E-value=0.0033  Score=45.70  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.14  E-value=0.0036  Score=47.92  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 027382           16 FKVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~   36 (224)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.12  E-value=0.0031  Score=48.31  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.12  E-value=0.0057  Score=44.82  Aligned_cols=86  Identities=10%  Similarity=-0.069  Sum_probs=57.9

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCCCCCH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      .+.+.++|+|+..  .......+..+|.+++++..+.. + ..+...+..+.+..  ..+.++.+|+|+.|...  . ..
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~  147 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-ML  147 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EE
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HH
Confidence            3678999999865  33455667779999999988664 4 66677777776543  24567899999999532  1 23


Q ss_pred             HHHHHHHHHcCCeEE
Q 027382          141 EDAQEFAQRENLFFM  155 (224)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (224)
                      .++.++.++.+.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            455666666665443

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.11  E-value=0.0034  Score=44.71  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.11  E-value=0.0031  Score=47.08  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -++++|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999854

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.11  E-value=0.0029  Score=53.59  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|++|||||||++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.11  E-value=0.0031  Score=48.87  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|++|+|||||++.+.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999998643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.11  E-value=0.0012  Score=48.88  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.11  E-value=0.0036  Score=46.85  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.10  E-value=0.0039  Score=46.38  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.10  E-value=0.0036  Score=47.22  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...+|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.09  E-value=0.0031  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.08  E-value=0.0024  Score=48.87  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=22.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ......|+++|.+||||||+.+.|...
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            445678999999999999999998653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.05  E-value=0.0043  Score=47.69  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.04  E-value=0.0043  Score=44.06  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.|+|.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.02  E-value=0.0023  Score=46.08  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=16.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.02  E-value=0.0017  Score=52.28  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            78999999999999999997543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.01  E-value=0.0046  Score=44.44  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.99  E-value=0.0043  Score=44.76  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.98  E-value=0.0039  Score=44.90  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.97  E-value=0.0039  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..--++++|+.||||||++..|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            344689999999999999999876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.96  E-value=0.0036  Score=48.92  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|+|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37899999999999999988643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.95  E-value=0.0044  Score=46.88  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.91  E-value=0.0041  Score=52.16  Aligned_cols=23  Identities=30%  Similarity=0.694  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .--++|+|..|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.91  E-value=0.0053  Score=47.79  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999873

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.0035  Score=52.33  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.|.+..
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            58999999999999999998743

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.90  E-value=0.0045  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999763

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.89  E-value=0.0051  Score=45.08  Aligned_cols=23  Identities=39%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.88  E-value=0.0046  Score=49.71  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.87  E-value=0.0037  Score=44.78  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999988754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.86  E-value=0.0048  Score=45.71  Aligned_cols=21  Identities=24%  Similarity=0.214  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.83  E-value=0.0055  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.82  E-value=0.0033  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|+|..|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46899999999999999999753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.82  E-value=0.0052  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.81  E-value=0.0046  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.81  E-value=0.0052  Score=45.52  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+++|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.79  E-value=0.0074  Score=45.48  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ....|++.|.+||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.79  E-value=0.021  Score=45.31  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.|++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346899999999999999999654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.77  E-value=0.0069  Score=44.36  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=22.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-+.|++.|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.69  E-value=0.0067  Score=45.79  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+.....|+|+|.+||||||+.+.|..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            455667899999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.67  E-value=0.0087  Score=51.00  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|+.|+|||||++.+.+...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999998543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.65  E-value=0.0069  Score=42.39  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027382           18 VVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~   36 (224)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3789999999999999975

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.65  E-value=0.0061  Score=51.10  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.63  E-value=0.0063  Score=49.44  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999985

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.62  E-value=0.0081  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.60  E-value=0.0066  Score=50.36  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +++++|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.55  E-value=0.0088  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|+|||||++.|.+...
T Consensus        28 ~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           28 LGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999998543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0095  Score=51.50  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|+.|+|||||++.|.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            479999999999999999998543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.53  E-value=0.0087  Score=45.09  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...-++++|+|.+||||||+...|..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            34568999999999999999998865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.52  E-value=0.0074  Score=47.22  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..+.-+++.|+||+|||+|.+.+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567888899999999999998754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.52  E-value=0.0085  Score=41.56  Aligned_cols=26  Identities=15%  Similarity=0.077  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34568999999999999999997643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.51  E-value=0.0072  Score=52.01  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            48999999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.50  E-value=0.0078  Score=44.84  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.49  E-value=0.0075  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3445999999999999999999764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.49  E-value=0.073  Score=39.93  Aligned_cols=90  Identities=14%  Similarity=0.020  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED  142 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~  142 (224)
                      .+.+.++|+|+..  .......+..+|.+++++..+ ..+...+...++.+.+.......+.+|.|+.+...  ....+ 
T Consensus       118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-  191 (245)
T 3ea0_A          118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-  191 (245)
T ss_dssp             HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred             hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence            4678999998854  234555677899999998775 57788888888888765443456889999998643  23333 


Q ss_pred             HHHHHHHcCCeEEEEcCC
Q 027382          143 AQEFAQRENLFFMETSAL  160 (224)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~  160 (224)
                        ++.+..+.+++.+-..
T Consensus       192 --~~~~~~~~~v~~~ip~  207 (245)
T 3ea0_A          192 --EIEKVIGRPISKRIPQ  207 (245)
T ss_dssp             --HHHHHHTSCEEEEECC
T ss_pred             --HHHHHhCCCeEEECCC
Confidence              3344456666655333

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.47  E-value=0.0076  Score=46.98  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999999763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.45  E-value=0.0085  Score=45.66  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.|++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999976

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.43  E-value=0.011  Score=50.90  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.42  E-value=0.0079  Score=46.61  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999886

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.40  E-value=0.0065  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.36  E-value=0.0088  Score=46.94  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.|++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            345899999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.33  E-value=0.012  Score=50.76  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++++|+.|+|||||++.+.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            479999999999999999988543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.33  E-value=0.009  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.29  E-value=0.15  Score=40.14  Aligned_cols=21  Identities=10%  Similarity=0.275  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455666999999999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.28  E-value=0.012  Score=50.07  Aligned_cols=23  Identities=13%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++|+|+.|+|||||++.+.+-..
T Consensus       297 ~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          297 IGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999998544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.28  E-value=0.0093  Score=46.78  Aligned_cols=134  Identities=15%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-CC----------ccCC-----------cceeeEEEE----E--EE-CCeEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFS-VD----------SKAT-----------IGVEFQTKT----L--SI-DHKTVK   65 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~--~~-~~~~~~   65 (224)
                      .-.|+++|+.|+||||++..|.+.-.. ..          +.+.           .+.......    .  -+ ......
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            346889999999999999988642110 00          0000           000000000    0  00 013357


Q ss_pred             EEEEeCCChhhhhh-h---hHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382           66 AQIWDTAGQERYRA-V---TSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP  139 (224)
Q Consensus        66 ~~l~D~~G~~~~~~-~---~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~  139 (224)
                      +.++||+|...... .   ....+.  ..+.+++|+|.+.  ....+..+...+..   .+ ..-++.||.|...    .
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~~~~~~---l~-~~giVltk~D~~~----~  254 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIVKRFSS---VP-VNQYIFTKIDETT----S  254 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHTTTTSS---SC-CCEEEEECTTTCS----C
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHHHHHhc---CC-CCEEEEeCCCccc----c
Confidence            89999999653321 1   112222  3677889998763  23334443333321   11 2345679999752    2


Q ss_pred             HHHHHHHHHHcCCeEEEEc
Q 027382          140 TEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~s  158 (224)
                      ...+...+...++|+..++
T Consensus       255 ~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             CHHHHHHHHTCSCCCSEEC
T ss_pred             hhHHHHHHHHHCcCEEEEE
Confidence            3456677778887755543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.24  E-value=0.014  Score=45.69  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            347899999999999999988764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.22  E-value=0.015  Score=49.53  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++|+|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.20  E-value=0.012  Score=46.14  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .....+++.|++|+|||+|.+.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999986654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.20  E-value=0.014  Score=50.44  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++|+|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            378999999999999999998654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.19  E-value=0.011  Score=46.54  Aligned_cols=85  Identities=16%  Similarity=0.109  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhhhh-h------hHhHh-----cCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           64 VKAQIWDTAGQERYRA-V------TSAYY-----RGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~-~------~~~~~-----~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      +.+.++|+||...... +      ....+     ...+.+++|+|+... +.+..+    ..+.+..  ++ .-+|.||.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~i-~gvVlTk~  259 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--NV-TGIILTKL  259 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--CC-CEEEEECG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--CC-CEEEEeCC
Confidence            4588999999421111 0      11111     247889999998742 222322    2232221  22 35667999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382          131 DLGSLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      |...    ....+.......+.|+..+..
T Consensus       260 D~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          260 DGTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             CCcc----chHHHHHHHHHHCCCEEEEeC
Confidence            9642    233577888888888766643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.17  E-value=0.013  Score=42.88  Aligned_cols=21  Identities=43%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.17  E-value=0.012  Score=43.30  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999998654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.14  E-value=0.016  Score=44.58  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...-.+++.|++|+|||+|.+.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45567999999999999999999764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.12  E-value=0.0084  Score=51.80  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999998744

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.12  E-value=0.0073  Score=51.94  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            48999999999999999888643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.11  E-value=0.012  Score=48.55  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...-|+++|.+||||||+.++|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999999753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.11  E-value=0.012  Score=44.20  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999887764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.08  E-value=0.011  Score=47.45  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998763

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.07  E-value=0.013  Score=47.34  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027382           18 VVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~   36 (224)
                      .+|+|+.|+|||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999986

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.05  E-value=0.0093  Score=51.39  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            48999999999999999998743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.017  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFS   41 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~   41 (224)
                      ++|+|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999986543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.99  E-value=0.012  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -+.|+|++|+|||||+..+.+..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.99  E-value=0.013  Score=47.20  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|.|++|+|||||++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998643

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.98  E-value=0.01  Score=45.56  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +...|+|.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.97  E-value=0.014  Score=45.54  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.96  E-value=0.017  Score=43.66  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.015  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+-.|++.|+||+|||+|.+++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999999863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.90  E-value=0.014  Score=46.26  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.|++.|++|+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            356899999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.90  E-value=0.018  Score=46.21  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...+|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999987754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.88  E-value=0.015  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            799999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.85  E-value=0.017  Score=41.79  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.85  E-value=0.017  Score=45.54  Aligned_cols=24  Identities=42%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.81  E-value=0.017  Score=45.74  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-.|++.|++|+|||+|++.+...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.81  E-value=0.022  Score=44.92  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-|+|+|++|||||+|...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            345789999999999999999753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.79  E-value=0.018  Score=46.06  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.76  E-value=0.02  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.018  Score=47.70  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+-.|++.|+||+|||+|.+++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4557999999999999999999863

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.018  Score=47.57  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +.+-.|++.|+||+|||+|.+++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34557999999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.66  E-value=0.0082  Score=46.06  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999999763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.63  E-value=0.02  Score=42.20  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027382           18 VVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~   36 (224)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.63  E-value=0.023  Score=40.76  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -|++.|++|+||||+.-.|....
T Consensus        18 gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            48999999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.62  E-value=0.016  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3447899999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.61  E-value=0.019  Score=45.72  Aligned_cols=21  Identities=14%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.54  E-value=0.023  Score=44.88  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.53  E-value=0.019  Score=47.59  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.53  E-value=0.024  Score=45.21  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.53  E-value=0.024  Score=42.21  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..-|++.|.+||||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.52  E-value=0.021  Score=46.72  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+-.|++.|+||+|||.|.+++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3456999999999999999999763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.50  E-value=0.02  Score=42.47  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +.|++.|.+||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.49  E-value=0.02  Score=48.27  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+++|++|+|||+|++.+.+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.49  E-value=0.024  Score=51.51  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++|+|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            379999999999999999996543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.46  E-value=0.02  Score=45.97  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.43  E-value=0.022  Score=45.83  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .-.|++.|++|+|||+|++.+...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            345899999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.40  E-value=0.023  Score=47.65  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+++|++|+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.39  E-value=0.021  Score=48.68  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .++++|++|+|||||++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-54
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-54
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-51
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-50
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-49
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-48
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-48
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-47
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-46
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-44
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-43
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-43
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-43
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-39
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-39
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-38
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-37
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-37
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-34
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-33
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-33
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-33
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-32
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-30
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-29
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-29
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-28
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-28
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-27
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-26
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	5e-26
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-23
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-22
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-21
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-19
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-15
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	6e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.001
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.002
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  170 bits (431), Expect = 2e-54
 Identities = 79/170 (46%), Positives = 116/170 (68%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
              R V  E  ++ A    + FMETSA    NVE AF T+  +I   + K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 4e-54
 Identities = 117/173 (67%), Positives = 149/173 (86%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQERYR +TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
             LRAVPT++A+ FA++ NL F+ETSAL++TNVE AF  +LTEIYRI+S+K +
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  162 bits (411), Expect = 3e-51
 Identities = 91/188 (48%), Positives = 135/188 (71%), Gaps = 1/188 (0%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           DY+FK++LIG+S VGKS LL RF+ + ++ D  +TIGV+F+ KT+ +D KTVK QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ +  WL E+  +A   ++ +L+GNKCDL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEH- 191
              R V  + A+EFA    + F+ETSAL++TNVE AFLT+  +I   +S+++L    +  
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 183

Query: 192 DVAGNSNL 199
           +  GN NL
Sbjct: 184 EDKGNVNL 191

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (402), Expect = 3e-50
 Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 1/167 (0%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDT 71
           D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K L +D   VK Q+WDT
Sbjct: 4   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 63

Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           AGQER+R+VT AYYR A   +L+YD+T + SFD++  WL E+  +A  ++ +ML+GNK D
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
               R V  ED ++ A+   L FMETSA    NV+ AF  +  E+ R
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 4e-49
 Identities = 82/165 (49%), Positives = 113/165 (68%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
            Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF T+ + +  + +K QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R   + N VI+LIGNK DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
            + R V  E+A++FA+   L F+E SA    NVE AFL    +IY
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (388), Expect = 4e-48
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K++LIGDS VGKS LL RF  ++F+     TIG++F+ KT+ I+ K VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
           ER+R +T+AYYRGA+G +LVYD+T  ++F ++ +W   +  HA+    ++L+GNK D+ +
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  +  +  A+   + F+E+SA    NV   F T+   I  
Sbjct: 122 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 6e-48
 Identities = 72/164 (43%), Positives = 111/164 (67%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              R V  + A+EF++ ++++++ETSA E+ NVE  FL +   +
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 2e-47
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H+  N+VIMLIGNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
           S R V  E+ + FA+   L FMETSA  A NVE AF+    EIYR I +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  150 bits (378), Expect = 1e-46
 Identities = 67/172 (38%), Positives = 112/172 (65%), Gaps = 4/172 (2%)

Query: 7   DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
           ++    DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K 
Sbjct: 1   NF----DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL 56

Query: 67  QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI 126
           QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+
Sbjct: 57  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116

Query: 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           GNKCD+   R V +E  ++ A      F E SA +  NV+  F  ++  I  
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 7e-44
 Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 11/182 (6%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL----------SIDHK 62
           DY+ K++ +GDS VGK+  L R+  N+F+     T+G++F+ K +          S    
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 63  TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH-ADKNI 121
            V  Q+WDTAGQER+R++T+A++R A+G +L++D+T +QSF ++  W+ +L+ +   +N 
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181
            I+LIGNK DL   R V    A+E A +  + + ETSA    NVE A  T+L  I + + 
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 182 KK 183
           + 
Sbjct: 183 QC 184

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (358), Expect = 1e-43
 Identities = 84/171 (49%), Positives = 114/171 (66%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
            + R V   +A  FAQ   L F+ETSAL   NVE AF+    +I   I   
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 3e-43
 Identities = 65/170 (38%), Positives = 105/170 (61%)

Query: 9   NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
           ++ +    K+++IG+S VGKS LL RF  + F  +  ATIGV+F+ KT+S+D    K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           WDTAGQER+R +T +YYRGA G +LVYD+T+R +F  +  WL+EL  +  +N ++ ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
                  R V   +  +FA++ ++ F+E SA     V+ AF  ++ +I +
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 4e-43
 Identities = 63/161 (39%), Positives = 104/161 (64%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+V +G+ +VGK+ L+ RF  + F    +ATIG++F +KT+ ++ +T++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+R++  +Y R +  A++VYD+T   SF    +W+D++R     +++IML+GNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V  E+ +  A+  N+ F+ETSA    NV+  F  V   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 3e-39
 Identities = 77/163 (47%), Positives = 108/163 (66%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           RY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           RAV  ++AQ +A   +L FMETSA  + NV   F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 9e-39
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +KVV++G   VGKS L  +F    F      TI  +F  K + +D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLGS 134
           ++ ++   Y +   G +LVY +  +QSF  +    D++      + + ++L+GNK DL S
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
            R V + + +  A+     FMETSA   T V+  F  ++ ++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 5e-38
 Identities = 65/164 (39%), Positives = 93/164 (56%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y FKVVL+G+  VGK+ L+ R+  N+F+     T+G  F TK L+I  K V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
           QER+ A+   YYR + GA+LVYD+T   SF  +  W+ ELR      I + ++GNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
             R V  ++A+ +A+        TSA +   +E  FL +   + 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  126 bits (317), Expect = 2e-37
 Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV+++G   VGKS L  +F  +EF  D + T    ++ K   +D + V+  I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQE 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            Y A+   Y+R   G + V+ +T+ +SF   A + ++ LR   D+N+  +L+GNK DL  
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E+A+  A + N+ ++ETSA    NV+  F  ++ EI  
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 6e-37
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 6/169 (3%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             +FKV+L+GD  VGKS L+ R+  N+F      TIGVEF  K L +D   V  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGN 128
           GQER+R++ + +YRG+   +L + +   QSF +++ W  E   +AD     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 129 KCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLTEI 176
           K D+   R V TE+AQ + +   +  + ETSA +ATNV  AF   +  +
Sbjct: 124 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 5e-35
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 14/177 (7%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
             + K V++GD AVGK+ LL  +A + F  +   T+  +    ++++  K     ++DTA
Sbjct: 7   ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
           GQE Y  +    Y      ++ + +    SF ++             N+  +LIG + DL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 133 GSLRA------------VPTEDAQEFAQREN-LFFMETSALEATNVETAFLTVLTEI 176
                            +  E  Q+ A+      ++E SAL    ++T F   +  I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 3/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +  +N F  +   TI   ++ + + ID +T    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
            Y A+   Y R   G + V+ +   +SF+ + ++ ++++   D  ++ ++L+GNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V +  AQ+ A+   + ++ETSA     VE AF T++ EI +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++G   VGKS L  +F +  F      TI  +   K + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD-ELRGHADKNIVIMLIGNKCDLGS 134
           ++ A+   Y +   G  LVY +T + +F+ +    +  LR    +++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 LRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
            R V  E  Q  A++  N  F+E+SA    NV   F  ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 3e-34
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 14/181 (7%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N+F  +   T+  +    T+ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
            Y  +    Y      ++ + +    SF+++         H       +L+G + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 136 RAV------------PTEDAQEFAQREN-LFFMETSALEATNVETAFLTVLTEIYRIISK 182
            +               E A++ A+    + ++E SAL    ++  F   +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 183 K 183
           K
Sbjct: 183 K 183

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (292), Expect = 1e-33
 Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 3/163 (1%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+VL+G++AVGKS ++ RF  N+F+ + + TIG  F T+ ++I+  TVK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL---G 133
           + ++   YYR A  A++VYD+TK QSF     W+ EL   A K+I+I L+GNK D+   G
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             R V  E+ ++ A+ + L F ETSA    NV   FL +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (292), Expect = 1e-33
 Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 5/163 (3%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           +FK+++IGDS VGK+ L  RF    F   ++ATIGV+F+ + + ID + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75  ERY-RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
           ER+ +++   YYR     + VYDMT   SF  +  W++E + H    +I  +L+GNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEAT---NVETAFLTV 172
            S   VPT+ AQ+FA   ++   ETSA       +VE  F+T+
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 2/167 (1%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
               K+V++G   VGKS L  +F ++ F  D       +  TK  S+D    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD 131
           GQE + A+   Y R   G +LV+ +  RQSF+ +   +   LR     +  ++L+GNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
           L S R VP  +A  F    ++ + E SA    NV+ AF  ++  + +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 4e-33
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +++V++G   VGKS L  +F ++ F  D   TI  +  TK   ID +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
            + A+   Y R   G +LV+ +T R SF+ + ++  + LR        ++LIGNK DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
            R V  E+ Q+ A++  + +ME SA    NV+ AF  ++  I + 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (287), Expect = 6e-33
 Identities = 68/161 (42%), Positives = 99/161 (61%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV L+GD+ VGKS ++ RF  + F  +   TIG  F TKT+   ++  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           R+RA+   YYRG+  A++VYD+TK ++F  +  W+ ELR H   +IV+ + GNKCDL  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           R V   DA+++A   +  F+ETSA  A N+   F+ +   I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 7e-33
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K V++GD AVGK+ LL  +  N F  +   T+  +  +  + +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
            Y  +    Y     +++ + +    SF+++         H   N  I+L+G K DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 136 RAVPTE------------DAQEFAQREN-LFFMETSALEATNVETAFLTVLTEI 176
           +    +                 A+    + ++E SAL    ++T F   +  +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (282), Expect = 4e-32
 Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 4/175 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KV+++GDS VGK+ L+ ++   +FS   KATIG +F TK + +D + V  QIWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
           R++++  A+YRGA   +LV+D+T   +F  +  W DE    A      N   +++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLT 186
           L + +            + N+ + ETSA EA NVE AF T+     +  ++  L 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 177

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 1e-30
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           +K+V++GD  VGKS L  +F +  F  D   TI   +   T  ID++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD-ELRGHADKNIVIMLIGNKCDLGS 134
            + A+   Y R   G ++VY +T + SF+H+ R+    LR    ++  ++L+ NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTVLTEIYR 178
           LR V  +  +E A + N+ ++ETSA +   NV+  F  ++  I +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 14/176 (7%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V++GD A GK+ LL   ++++F      T+  E     + +D K V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
            Y  +    Y      ++ + +    S +++         H   N+ I+L+GNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 136 RAV------------PTEDAQEFAQRENLF-FMETSALEATNVETAFLTVLTEIYR 178
                            E+ ++ A R   F +ME SA     V   F        +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 9/164 (5%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           +++++G  A GK+ +L +    E       T          ++++K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKC---DL 132
            R +   Y++   G + V D   R+  +     L   L     ++ V+++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
            +   +  +      +  N +   T A     +      +  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-29
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           ++V + G   VGKS L+ RF +  F      T+   ++    S D      QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI-SCDKSICTLQITDTTGSH 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLG 133
           ++ A+           +LVY +T RQS + +    +++       ++I IML+GNKCD  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
             R V + +A+  A+     FMETSA    NV+  F  +L    R
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (262), Expect = 4e-29
 Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 7/171 (4%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL-SIDHKTVKAQIWDTAG 73
           + KV+++GDS VGK+ L+ R+  +++S   KATIG +F TK +     K    Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN----IVIMLIGNK 129
           QER++++  A+YRGA   +LVYD+T   SF+++  W DE   HA+ N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 CDLGSLRAVPTEDAQEFAQRE--NLFFMETSALEATNVETAFLTVLTEIYR 178
            D    + + +E + +   +   ++    TSA  A NV+TAF  +     +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  105 bits (261), Expect = 5e-29
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G  A GK+ +L +    +  V +  T+G   +T    + +K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLG- 133
           + R +   YY G  G + V D   R   D   + L  +    + ++ +I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 134 --SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
                 +  +      +  N +   + A     +      + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 3e-28
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
           FK+VL+GD   GK+  + R    EF     AT+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
           ++  +   YY  A  A++++D+T R ++ ++  W  +L    + NI I+L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           +         F +++NL + + SA    N E  FL +  ++
Sbjct: 123 KVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 1/162 (0%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++G+ AVGKS ++ R+ +  F+ D K TIGV+F  + + ++ + V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
           + A+T AYYRGA   +LV+  T R+SF+ ++ W +++      +I   L+ NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            +  E+A+  A+R  L F  TS  E  NV   F  +  +  +
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  102 bits (254), Expect = 6e-28
 Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E  V +K TIG   +T    + +K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-- 132
             R     YY      + V D T +      ++ L  +    + ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 133 -GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
             S   V  E      +  +   + +SA++   +          +  +I ++ L
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL----DWLIDVIKEEQL 182

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (253), Expect = 9e-28
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K+V++GDS  GK+ LL  FA++ F  +   T+  E  T +  ID + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL---- 132
           Y  V    Y  +   ++ +D+++ ++ D + +           N  ++L+G K DL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 133 --------GSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFLTVLTEIYRIISK 182
                        V  +     A++     ++E SAL++ N       V T     ++K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA--CVNK 179

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+ ++G  +VGKS L  +F   +F      TI     TK ++++ +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGS 134
            Y      Y     G +LVY +T  +SF+ +     +L        I IML+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            R +  E+ +  A+  N  F+E+SA E       F  ++ E  +
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+ + G + VGKS L+ RF    F  +   T+   ++ +  +ID + V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQE 61

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD-ELRGHADKNIVIMLIGNKCDLGS 134
                   + R   G +LVYD+T R SF+ +    +        KN+ ++L+GNK DL  
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTVLTEIYR 178
            R V TE+ ++ A      F E SA     N+   F  +  E+ R
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (242), Expect = 3e-26
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 7/173 (4%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ ++GD+  GKS L+ RF    +          E   K + +D +T    I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD--LG 133
             +          +    + D    Q+   +   L  LRG     + + L+G +      
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 134 SLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
           S R V    A+      +   + ET A    NV+  F  V  ++  +  ++ L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 5e-26
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 12/180 (6%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
            + ++  +N +     KV+++G    GK+ +L +F+ NE              +    I 
Sbjct: 4   FTRIWRLFNHQE---HKVIIVGLDNAGKTTILYQFSMNEVV-----HTSPTIGSNVEEIV 55

Query: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120
               +  +WD  GQE  R+  + YY      ++V D T R+        L ++  H D  
Sbjct: 56  INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 115

Query: 121 IV-IMLIGNKCDL---GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
              +++  NK D+    ++  +         +          AL    +      +++ +
Sbjct: 116 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 5e-26
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           V+KV+L+G   VGKS L   F   E     +A        +++ +D +     ++D   Q
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARW-LDELRGHADKNIVIMLIGNKCDLG 133
           +  R +           ++VY +T + SF+  +   +   R     ++ I+L+GNK DL 
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
             R V  ++ +  A   +  F+ETSA    NV+  F  V+ +I      K
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 4e-25
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDT 71
           +  ++VVLIG+  VGKS L   FA    S+DS    +G +   +TL +D ++    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 72  A-GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNK 129
              +     +     +     ++VY +T R SF+  +    +LR     ++I I+L+GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 CDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            DL   R V   + +  A   +  F+ETSA    NV+  F  ++ ++  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 91.2 bits (225), Expect = 1e-23
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
           D   +++L+G    GK+ LL + A  + S  +  T G   ++    +  +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKS----VQSQGFKLNVWDIG 68

Query: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCD 131
           GQ + R    +Y+      + V D   R+ F+   + L EL        + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 132 LG---SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
           L        +         +         SAL    V+     V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 89.3 bits (220), Expect = 5e-23
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L +F   +       TI         +++H+  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDL-- 132
             R+    Y+    G + V D   RQ      R L   L         +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 133 -GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             S  A+      +  +  +      SA+   ++      +L +I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 8/165 (4%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            ++ L+G    GK+  +   A  +F+ D   T+G   +     I    V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-- 132
           R+R++   Y RG    + + D   ++  +     L  L      + I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 133 -GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
               + +  +      Q   +     S  E  N++     ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.3 bits (215), Expect = 6e-22
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 47/207 (22%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K++L+G    GKS  + +            T G+         D ++V  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 76  RYRAVTSAYYRGAVGAMLVYDMT-----------KRQSFDHMARWLDELRGHADKNIVIM 124
             R      +      M +  ++           + +  +  A +   +     +N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRE--------------------------NLFFMETS 158
           L  NK DL   + + +     F + +                           ++   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 159 ALEATNVETAFLTVLTEIYRIISKKSL 185
           A +  N+   F  V       I + +L
Sbjct: 177 ATDTENIRFVFAAV----KDTILQLNL 199

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.4 bits (207), Expect = 3e-21
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
           K++ +G    GK+ LL     +  +     T+   +   +  +    +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL--- 132
            R +   Y+    G + + D    + FD     LD L   A+ K++  +++GNK D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 -------GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
                   +L  + T  +Q    +  +     S +       AF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.1 bits (199), Expect = 1e-19
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 45/202 (22%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + K++L+G    GKS  L +            T G+         + K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 75  ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-----------LRGHADKNIVI 123
              R      +      + +   ++        R  +            +      N+ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 124 MLIGNKCDLGSLRAVPTEDAQEFAQRE---------------------------NLFFME 156
           +L  NK DL   +         F + E                            L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 157 TSALEATNVETAFLTVLTEIYR 178
           T+A+   N+   F  V   I  
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 3e-19
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 9/165 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            +++++G    GK+ +L R    E       T          ++ +K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLG- 133
             R     YY      + V D   R         L  +      +  ++++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 134 --SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             +   +         +       +TSA + T ++ A   ++  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.0 bits (196), Expect = 3e-19
 Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 46/200 (23%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K++L+G    GKS ++ +      +       G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQR 53

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSF-----------DHMARWLDELRGHADKNIVIM 124
             R      + G    +    ++                + M  +          +  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRE--------------------------NLFFMETS 158
           L  NK DL   +   +     + +                             ++   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 159 ALEATNVETAFLTVLTEIYR 178
           A +  NV+  F  V   I +
Sbjct: 174 ATDTKNVQFVFDAVTDVIIK 193

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.6 bits (198), Expect = 3e-19
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 24/191 (12%)

Query: 10  QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW 69
           Q      +++L+G    GKS ++ +            T G+             V   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFETK----FQVDKVNFHMF 52

Query: 70  DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-----------FDHMARWLDELRGHAD 118
           D  GQ   R      +      + V   +                + +  +         
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112

Query: 119 KNIVIMLIGNKCDLGSLRAVPTEDA-----QEFAQRENLFFMETSALEATNVETAFLTVL 173
           + I ++L  NK DL + + +  +        EFA+            E   V  A   + 
Sbjct: 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 172

Query: 174 TEIYRIISKKS 184
            E  RI +   
Sbjct: 173 DEFLRISTASG 183

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 1e-16
 Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 7/162 (4%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
            V+ +G    GK+ L  R    ++  D++ +I        ++ +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWLDELRGHADKNIVIMLIGNKCDL 132
              +   +   A   + V D    Q            +         +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
               A   +  Q+  ++E      T +   + ++++      
Sbjct: 121 --AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 68.6 bits (166), Expect = 5e-15
 Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 21/177 (11%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            K+V +G    GK+ LL     +                 +  +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
           + R V   Y     G + + D    +        LD  +      N+ I+++GNK D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 135 LRAV---------------PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
             +                    + +      L     S L+       F  +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 27/190 (14%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y   +++ G    GK+ LL     +      + T+  +        D   V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 74  QERYRAVTSAYYRGAVGA-----MLVYDMTKRQSFDHMARWLDELRGH----ADKNIVIM 124
             + R   S Y +           +V      +     A +L ++        +  I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRE----------NLFFMETSALEATNVETAFLTVLT 174
           +  NK +L    A P    ++  + E          +L  +E    E    E     + +
Sbjct: 116 IACNKSEL--FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 175 EIYRIISKKS 184
                 +   
Sbjct: 174 TDGFKFANLE 183

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 1/151 (0%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
            KVV+ G    GKS LL   A  E ++ +    G         I    +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
                            +          D       +      + I  +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVE 166
           +A  T +    ++      +  SA     V+
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVD 151

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 7/155 (4%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKA------TIGVEFQTKTLSIDHKTVKAQIWDT 71
           V L+G    GKS LLA   R    +           +GV   ++        +   I   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 72  AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
           +  +        +       + V D               E+  +    +    +     
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLR-KEVGAYDPALLRRPSLVALNK 122

Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166
           +  L     +   +   RE L  +  SAL    + 
Sbjct: 123 VDLLEEEAVKALADALAREGLAVLPVSALTGAGLP 157

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 15/120 (12%), Positives = 27/120 (22%), Gaps = 7/120 (5%)

Query: 16  FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI--WDTAG 73
             V + G++  GKS  +          +  A  GV   T             +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 74  QERYRAVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
                     Y              ++  +   +       +            +  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS---MMKKEFYFVRTKVD 173

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 14/154 (9%)

Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLAR-FARNEFSVDSKATIGVEFQTKTLSI 59
           +  L G+  Q+      ++++G   VGKS  +         S+    + G      + S 
Sbjct: 18  LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 77

Query: 60  DHKTV---------KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARW 109
              T+         +    +       ++         +  +   D  +  + D  +A+ 
Sbjct: 78  AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKA 137

Query: 110 LDELRG-HADKNIVIMLIGNKCDLGSLRAVPTED 142
           + +  G       ++ L            +P ++
Sbjct: 138 ITDSFGKGIWNKAIVAL--THAQFSPPDGLPYDE 169

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 14/169 (8%)

Query: 11  KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD 70
           +I    KV ++G   VGKS L       E ++ S    G         +     K    D
Sbjct: 4   EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 71  TAGQERYRAVTS--------AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV 122
           TAG  R   V               ++    V  +    +     +          +   
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 123 IMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-----FMETSALEATNVE 166
            +++ NK DL   R    ++  +  + +  F      + TSA +  N++
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 171

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 19/177 (10%), Positives = 44/177 (24%), Gaps = 13/177 (7%)

Query: 15  VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
           + ++ L G S VGKS  +      +    + +  G         I+ +     +      
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 75  ERYRAVTS------AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
           +  ++           Y      +                 +          I +++I  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 129 KCDL---GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
           K D    G          Q          +  S+      +         I ++I++
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKD----EAWGAIKKMINR 195

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 17  KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG--- 73
           ++V++G   VGKS LL R    + ++ +    G      +  I  + +  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  ------QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIG 127
                 +      T      A   + V D +     +                I  + + 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 128 NKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
            K +         E   +     ++     SAL+   +E     +   IYR
Sbjct: 121 EKIN-------EEEIKNKLGTDRHMVK--ISALKGEGLE----KLEESIYR 158

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 21/164 (12%), Positives = 48/164 (29%), Gaps = 10/164 (6%)

Query: 13  DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLS---------IDHKT 63
           D   +V   G S  GKS  L      +    +  T G                  +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 64  VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVI 123
                 +   + +         R ++  ++V    +    D   + ++         +V+
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 MLIGNKCDLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVE 166
           +   +K   G+ +A      +   A   ++     S+L+   V+
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD 177

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 9/159 (5%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
           Y   V ++G   VGKS LL      + +  S        +     +     +    DT G
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPG 62

Query: 74  QERYRAVTSAYYRGAVGAMLVYDMTKRQSFD------HMARWLDELRGHADKNIVIMLIG 127
             +       +    V   L          D           +          + I+L+G
Sbjct: 63  LHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVG 122

Query: 128 NKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166
           NK D         +   E            SAL+   V 
Sbjct: 123 NKLDAAKYPEEAMKAYHELLPEAEPRM--LSALDERQVA 159

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 24/186 (12%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTK---------TLSIDHKTVKAQI 68
           ++  G S VGKS L+ R    +     +  +  +                        + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH-------ADKNI 121
                ++          +    A+LV D               E+           + +I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRE----NLFFMETSALEATNVETAFLTVLTEIY 177
             ++  NK D             E  +      +  F+  SA    N+E     +   I+
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIE----RLKNRIF 178

Query: 178 RIISKK 183
            +I ++
Sbjct: 179 EVIRER 184

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 12/161 (7%)

Query: 14  YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT-- 71
           Y   + ++G   VGKS LL +    + S+ S+       +   +  +       +     
Sbjct: 4   YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63

Query: 72  ------AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
                 A         S+        + V + T+    D M            K  VI+ 
Sbjct: 64  HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKL----REGKAPVILA 119

Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166
           +    ++     +        +Q   L  +  SA    NV+
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 160

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 12/173 (6%)

Query: 18  VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
           V+++G   VGKS L  +  + + ++      GV       +++      ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 78  RAVTSAYYRGAVGAMLVYD-----MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
                +     V   ++ +                             +  +L+ NK + 
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121

Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
             LR    E   E         +  SA    N++    T+L  I + + +K L
Sbjct: 122 --LREFEREVKPELYSLGFGEPIPVSAEHNINLD----TMLETIIKKLEEKGL 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.69
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.59
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.32
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.27
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.0
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.99
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.7
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.37
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.32
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.27
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.11
d1okkd2	207	GTPase domain of the signal recognition particle r	98.03
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.01
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.89
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.59
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.57
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.54
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.45
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.36
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.34
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.3
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.27
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.26
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.26
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.24
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.2
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.2
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.09
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.08
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.04
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.03
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.01
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.99
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.97
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.95
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.93
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.91
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.91
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.9
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.9
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.89
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.88
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.87
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.87
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.83
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.81
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.8
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.79
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.79
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.76
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.75
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.74
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.7
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.67
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.65
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.63
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.62
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.62
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.62
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.58
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.58
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.54
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.48
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.48
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.46
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.45
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.44
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.41
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.37
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.08
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.07
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.02
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.88
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.86
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.84
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.73
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.67
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.65
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.64
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.51
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.43
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.42
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.4
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.34
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.29
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.19
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.09
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.07
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.04
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.8
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.74
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.7
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.69
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.68
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.59
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.53
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.5
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.44
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.43
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.38
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.36
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.34
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.26
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.24
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.2
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.1
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.07
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.93
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.87
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.79
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.76
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.37
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.22
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.09
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.09
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.85
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.63
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.42
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.23
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.16
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.05
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.88
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.56
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.22
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.38
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.05
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.52
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.08
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.71
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.46
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.11
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.36
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.85
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.73
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.69
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.32
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	83.01
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.68
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.64
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	82.53
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.14
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	82.03
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.75
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.67
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.55
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.42
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.39
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.24
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.22
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.91

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5e-37  Score=223.76  Aligned_cols=167  Identities=40%  Similarity=0.765  Sum_probs=156.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+......+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            56789999999999999999999999998888888888899988888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |+|||+++++++..+..|+..+........|+++++||+|+.+.+.++.+++++++++++++|++|||++|.|++++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999988887776678999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          172 VLTEIYR  178 (224)
Q Consensus       172 i~~~i~~  178 (224)
                      +++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=222.47  Aligned_cols=168  Identities=43%  Similarity=0.767  Sum_probs=157.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            56789999999999999999999999999888888888899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||++++++++.+..|+..+.+......|+++|+||+|+.+...+..++++++++.+++++++|||++|.||+++|..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999888777678999999999999877888899999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027382          172 VLTEIYRI  179 (224)
Q Consensus       172 i~~~i~~~  179 (224)
                      ++..+++.
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888664

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=219.95  Aligned_cols=165  Identities=49%  Similarity=0.870  Sum_probs=155.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +++.+||+|+|++|||||||+++++++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            46789999999999999999999999999888888888889989999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||+++++++..+..|+..+.+......|+++++||+|+........++++.+++.+++++++|||++|.||+++|..
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877788999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=219.10  Aligned_cols=165  Identities=26%  Similarity=0.333  Sum_probs=134.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+|+|++|||||||++++.+..... +.++ +.......+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            3799999999999999999999876533 3333 3444556777899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++++++.+..|+..+..... ..+|+++|+||+|+.+.++++..+++++++.++++|++|||++|.|++++|..++
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999998876553 5789999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027382          174 TEIYRIIS  181 (224)
Q Consensus       174 ~~i~~~~~  181 (224)
                      +.+..+..
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            88866543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-36  Score=219.71  Aligned_cols=172  Identities=49%  Similarity=0.797  Sum_probs=160.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            67889999999999999999999999999888889888888888888889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ++|||.++++++..+..|+..+.+....+.|+++++||+|+........+++.++++.++++|+++||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988877778999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027382          172 VLTEIYRIISKK  183 (224)
Q Consensus       172 i~~~i~~~~~~~  183 (224)
                      +++.+.+.+..+
T Consensus       162 l~~~i~~~~~~~  173 (174)
T d2bmea1         162 CARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999998776654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=220.94  Aligned_cols=169  Identities=31%  Similarity=0.497  Sum_probs=152.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ++.+.+||+|+|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45678999999999999999999999999888887774 45556778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +|+|||+++++++..+..|+..+.+.. ..+.|+++|+||+|+.+.+....++++.+++.++++|++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999998876543 4679999999999998778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          170 LTVLTEIYRII  180 (224)
Q Consensus       170 ~~i~~~i~~~~  180 (224)
                      ..+++.+.+..
T Consensus       161 ~~l~~~i~k~~  171 (173)
T d2fn4a1         161 EQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999886654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-36  Score=220.69  Aligned_cols=162  Identities=36%  Similarity=0.637  Sum_probs=152.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.+.........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888999988888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ||++++++++.+..|+..+.+..+ +.|+++|+||+|+.+.+.+..+++++++++++++|+++||++|.|++++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999998877654 7999999999999887889999999999999999999999999999999999998


Q ss_pred             HHH
Q 027382          175 EIY  177 (224)
Q Consensus       175 ~i~  177 (224)
                      .++
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=221.48  Aligned_cols=165  Identities=39%  Similarity=0.691  Sum_probs=148.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+|+|++|||||||++++.++.+...+.++.+..........++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57899999999999999999999999999999998889998888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||++++++++.+..|+..+........|+++++||+|+.+.+.++.+++++++++++++|++|||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776666789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          174 TEIYR  178 (224)
Q Consensus       174 ~~i~~  178 (224)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=221.31  Aligned_cols=174  Identities=49%  Similarity=0.841  Sum_probs=161.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .++..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++++|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46788999999999999999999999999988999998988888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||+++++++..+..|+..+.+....+.|+++|+||.|+.+...+..++...++...++.|+++||++|.|++++|.
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999888877777899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 027382          171 TVLTEIYRIISKKS  184 (224)
Q Consensus       171 ~i~~~i~~~~~~~~  184 (224)
                      .+++.+.+......
T Consensus       162 ~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         162 TMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhhcc
Confidence            99998877654433

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=217.56  Aligned_cols=173  Identities=68%  Similarity=1.104  Sum_probs=157.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      +++.+||+|+|++|||||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            35789999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |+|||.++++++..+.+|+..+.+....++|+++|+||+|+.+.+....+....+...++.+++++||++|.|++++|..
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998888778999999999999877777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 027382          172 VLTEIYRIISKKS  184 (224)
Q Consensus       172 i~~~i~~~~~~~~  184 (224)
                      +++.+.+...+++
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999988776543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=217.42  Aligned_cols=170  Identities=52%  Similarity=0.895  Sum_probs=154.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+|+|++|||||||++++.++.+...+.++.+.+............+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999888888888888888888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||++++++++.+..|+..+.+....++|+++|+||+|+...+....+++.++++.++++|+++||++|.|++++|.+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999988887777899999999999987788889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 027382          174 TEIYRIISKK  183 (224)
Q Consensus       174 ~~i~~~~~~~  183 (224)
                      +.+++..++.
T Consensus       162 ~~i~~~~~~~  171 (173)
T d2a5ja1         162 KEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            9998877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=8.3e-36  Score=217.04  Aligned_cols=164  Identities=34%  Similarity=0.558  Sum_probs=146.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+|+|++|||||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            4689999999999999999999999998888888776654 566789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.++.++++++++.++++|+++||++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998887654 3689999999999998878899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          173 LTEIYR  178 (224)
Q Consensus       173 ~~~i~~  178 (224)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-35  Score=213.88  Aligned_cols=163  Identities=42%  Similarity=0.750  Sum_probs=153.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+..........+.....+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            57899999999999999999999999999999998888888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||+++++++..+..|+..+.+....+.|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888887778999999999999988888999999999999999999999999999999999988


Q ss_pred             HHH
Q 027382          174 TEI  176 (224)
Q Consensus       174 ~~i  176 (224)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-35  Score=214.99  Aligned_cols=163  Identities=33%  Similarity=0.521  Sum_probs=148.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            5899999999999999999999999888888886544 456677899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTV  172 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~~~i  172 (224)
                      ||+++++++..+..|+..+.+.. ..+.|+++++||+|+...+.++.+++++++++++++|+++||+++. ||+++|..+
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            99999999999999999887654 3579999999999998888899999999999999999999999986 999999999


Q ss_pred             HHHHHH
Q 027382          173 LTEIYR  178 (224)
Q Consensus       173 ~~~i~~  178 (224)
                      ++.+.+
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=215.18  Aligned_cols=161  Identities=39%  Similarity=0.755  Sum_probs=151.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE  175 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  175 (224)
                      |++++.++..+..|+..+.+....+.|+++|+||+|+.+.+.+..+++.+++++++++|++|||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999998887776789999999999998778888999999999999999999999999999999999876


Q ss_pred             H
Q 027382          176 I  176 (224)
Q Consensus       176 i  176 (224)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-36  Score=216.44  Aligned_cols=163  Identities=31%  Similarity=0.427  Sum_probs=149.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      ..+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|.+.+..++..++..+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            457999999999999999999999998888888877664 4667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||++++++++.+..|+..+.+.. ..++|+++|+||+|+...+.++.+++++++++++++|++|||++|.|++++|..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999999998887654 4679999999999998878899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          173 LTEIY  177 (224)
Q Consensus       173 ~~~i~  177 (224)
                      +..+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-36  Score=218.13  Aligned_cols=171  Identities=46%  Similarity=0.821  Sum_probs=130.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      .+++.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            35678999999999999999999999999888888888889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +|+|||++++.++..+..|+..+......+.|+++|+||.|+........+++..++...+++|++|||++|.|++++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877777899999999999988778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027382          171 TVLTEIYRIIS  181 (224)
Q Consensus       171 ~i~~~i~~~~~  181 (224)
                      +|++.+.+++.
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99998876653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=218.21  Aligned_cols=171  Identities=39%  Similarity=0.680  Sum_probs=152.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC----------eEEEEEEEeCCChhhhhhhh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH----------KTVKAQIWDTAGQERYRAVT   81 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~G~~~~~~~~   81 (224)
                      +.+.+||+|+|++|||||||+++|.++.+...+.++.+.++....+..+.          ..+.+.+||++|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            56789999999999999999999999998888888777776666655432          34789999999999999999


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL  160 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (224)
                      ..+++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.+.+.+..+++++++++++++|+++||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            999999999999999999999999999988776554 3578899999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q 027382          161 EATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       161 ~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                      +|.|++++|.++++.+.++..+
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998876554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-35  Score=212.63  Aligned_cols=164  Identities=33%  Similarity=0.536  Sum_probs=144.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+|+|++|||||||++++.++.+...+.++.+ ......+.+++..+.+.+||++|.+.+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888888855 55567777899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||.+++++++.+..|+..+.+.. ....|+++|+||+|+.+.+.+..+++++++++++++|++|||++|.|++++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999998766543 35799999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          174 TEIYRI  179 (224)
Q Consensus       174 ~~i~~~  179 (224)
                      +.+.+.
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=215.25  Aligned_cols=162  Identities=30%  Similarity=0.444  Sum_probs=144.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.|||+|+|++|||||||+++|+++.+...+.+|.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999998888888877554 3455678999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |||+++++++..+..|+..+.+..  ..++|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999988776543  367999999999999887889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=211.66  Aligned_cols=163  Identities=47%  Similarity=0.789  Sum_probs=153.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      -.+||+++|++|||||||+++|..+.+...+.++.+.+............+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999988999998998888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||.+++++++.+..|+..+.+....+.|+++|+||+|+.+.+.++.++++++++..+++|+++||++|.||+++|..|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999988877777899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027382          174 TEI  176 (224)
Q Consensus       174 ~~i  176 (224)
                      +.+
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            755

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=214.09  Aligned_cols=166  Identities=24%  Similarity=0.359  Sum_probs=144.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      +....+||+|+|++|||||||+++|+.+.+...+.+|.+ ......+...+..+.+.+||++|++.+..++..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            567899999999999999999999999998888888875 4455667778889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMET  157 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  157 (224)
                      +++|||++++++++.+..|+....+....+.|+++|+||+|+.+            .+.++.+++.+++++++ +.|++|
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999887644444333345899999999999864            46788899999999988 689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ||++|.||+++|+.+++.++
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999988773

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=213.18  Aligned_cols=161  Identities=24%  Similarity=0.353  Sum_probs=140.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|..+.+...+.++.+. ........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            589999999999999999999999998888888764 4455666788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMETSALE  161 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~~  161 (224)
                      ||+++++|++.+..|+.........+.|+++|+||+|+.+            .+.+..++++++++.++ ++|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998755444444455899999999999852            34688899999999965 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEI  176 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i  176 (224)
                      |.||+++|+.++..+
T Consensus       162 ~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         162 QKGLKNVFDEAILAA  176 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999988655

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=211.00  Aligned_cols=163  Identities=31%  Similarity=0.502  Sum_probs=147.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+++|++|||||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999998888888865 4555677788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV  172 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  172 (224)
                      |||+++++++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++++++++|++|||++|.|++++|..+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999998876644 3679999999999998878888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          173 LTEIY  177 (224)
Q Consensus       173 ~~~i~  177 (224)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=210.31  Aligned_cols=163  Identities=33%  Similarity=0.475  Sum_probs=143.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+|+|++|||||||++++.++.+...+.||.+..+.. ....++..+.+.+||++|++.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999988999998776654 34568889999999999987664 456788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTV  172 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~~~i  172 (224)
                      ||+++++++..+..|+....... ..+.|+++|+||+|+.+.+.++.+++++++++++++|++|||++|. ||+++|..+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999999876655433 3579999999999998878899999999999999999999999998 599999999


Q ss_pred             HHHHHHH
Q 027382          173 LTEIYRI  179 (224)
Q Consensus       173 ~~~i~~~  179 (224)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=208.53  Aligned_cols=166  Identities=45%  Similarity=0.750  Sum_probs=144.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ++..+||+|+|+++||||||+++++++.+... +.++.+.+.....+..++..+.+.+|||||++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            67889999999999999999999999887544 45556778888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL  170 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  170 (224)
                      +++|||+++++++..+..|+..+.+......|+++++||.|+.+...+..+++..+++.++++|+++||++|.|++++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999998888777777899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027382          171 TVLTEIY  177 (224)
Q Consensus       171 ~i~~~i~  177 (224)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=209.54  Aligned_cols=162  Identities=27%  Similarity=0.385  Sum_probs=142.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      ..||+|+|++|||||||+++|..+.+...+.+|.+ .........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888865 44556677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMETSALE  161 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~~  161 (224)
                      ||++++++++.+..|+..+.+....++|+++|+||+|+.+            .+.+..+++++++++++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999988755544444456899999999999853            24578889999999988 4799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027382          162 ATNVETAFLTVLTEIY  177 (224)
Q Consensus       162 ~~~v~~~~~~i~~~i~  177 (224)
                      |.|++++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998775

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=208.30  Aligned_cols=165  Identities=42%  Similarity=0.773  Sum_probs=146.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      |||.+++++++.+..|+..+........|++++++|.|+.+ +....++++++++++++++++|||++|.|++++|.+|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999998888887777899999999999865 55678899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027382          174 TEIYRI  179 (224)
Q Consensus       174 ~~i~~~  179 (224)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            888654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-34  Score=207.56  Aligned_cols=162  Identities=44%  Similarity=0.749  Sum_probs=149.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999999999989888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC---CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS---LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      ||++++++++.+..|+..+........|+++++||+|+.+   .+.+..++++++++.++++|+++||++|.|++++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            9999999999999999887776667899999999999843   3678889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027382          172 VLTEI  176 (224)
Q Consensus       172 i~~~i  176 (224)
                      |++.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=214.80  Aligned_cols=160  Identities=31%  Similarity=0.575  Sum_probs=141.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999889999999999888888889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT  174 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  174 (224)
                      ||++++++++.+.+|+..+.+..+ ++|+++|+||+|+......  ++...++..++++|+++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999988876654 7999999999999765433  3566788889999999999999999999999998


Q ss_pred             HHH
Q 027382          175 EIY  177 (224)
Q Consensus       175 ~i~  177 (224)
                      .++
T Consensus       160 ~l~  162 (170)
T d1i2ma_         160 KLI  162 (170)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            885

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=204.96  Aligned_cols=161  Identities=34%  Similarity=0.589  Sum_probs=145.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            4899999999999999999999999988888887766554 455678899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL  173 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  173 (224)
                      ||++++.+++.+..|+..+.+... .++|+++|+||+|+.. +.+..++++++++.++++|+++||++|.|++++|..++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999998877653 5799999999999965 56778899999999999999999999999999999999


Q ss_pred             HHHH
Q 027382          174 TEIY  177 (224)
Q Consensus       174 ~~i~  177 (224)
                      +.+.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=206.92  Aligned_cols=163  Identities=30%  Similarity=0.525  Sum_probs=146.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+|+|++|||||||++++..+.+...+.++.+..+ ...+..+...+.+.+||++|++.+...+..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999888888876554 4556678899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLT  171 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~  171 (224)
                      |||++++++++.+..|+..+.+.. ..++|+++|+||+|+........+++..+++++ +++|++|||++|.|++++|..
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998877644 467999999999999888888899999999884 689999999999999999999


Q ss_pred             HHHHHH
Q 027382          172 VLTEIY  177 (224)
Q Consensus       172 i~~~i~  177 (224)
                      +++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=204.71  Aligned_cols=168  Identities=43%  Similarity=0.766  Sum_probs=153.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..-..+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34567999999999999999999999999988888888888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      +++|||+++++++..+..|+..+.+... ...|+++++||.|... +.+...+++++++.++++|+++||++|.|++++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999877653 5789999999999754 6788899999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          170 LTVLTEIYRI  179 (224)
Q Consensus       170 ~~i~~~i~~~  179 (224)
                      +++++.+.+.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999888754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=204.44  Aligned_cols=164  Identities=27%  Similarity=0.381  Sum_probs=140.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCC---hhhhhhhhHhHhcCCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAG---QERYRAVTSAYYRGAV   89 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---~~~~~~~~~~~~~~~d   89 (224)
                      ..|||+++|++|||||||+++|.+..... ...++.+.+.....+.+++..+.+.+||+++   ++.+  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            46899999999999999999999877653 3445567777888888899999999999775   4433  5677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           90 GAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      ++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.++++.++++++++.++++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998887654 368999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          169 FLTVLTEIYRI  179 (224)
Q Consensus       169 ~~~i~~~i~~~  179 (224)
                      |..+++.+..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999987543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=201.10  Aligned_cols=165  Identities=39%  Similarity=0.684  Sum_probs=146.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ....+||+|+|++|||||||++++.++.+...+.++.+..........++..+.+.+||++|.......+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999999888999988888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHH
Q 027382           92 MLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVE  166 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~  166 (224)
                      +++||.+++.+++.+..|+..+.+..    ..++|+++|+||.|+.+ +.+..+++++++++.+ ++|++|||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            99999999999999999987776533    25799999999999965 6788999999999875 799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          167 TAFLTVLTEIY  177 (224)
Q Consensus       167 ~~~~~i~~~i~  177 (224)
                      ++|+.+++.++
T Consensus       162 e~f~~l~~~il  172 (174)
T d1wmsa_         162 AAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.5e-33  Score=200.61  Aligned_cols=159  Identities=43%  Similarity=0.770  Sum_probs=143.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhHhcCCCEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-VTSAYYRGAVGAM   92 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vi   92 (224)
                      +.+||+|+|++|||||||++++.++.+...+.++.+.........+......+.+||++|...... .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999988988888888888888899999999999999776654 5778899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE---ATNVETA  168 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~  168 (224)
                      +|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.++.+++++++++++++|+++||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999998887654 36899999999999988788999999999999999999999997   4699999


Q ss_pred             HHHH
Q 027382          169 FLTV  172 (224)
Q Consensus       169 ~~~i  172 (224)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-33  Score=205.57  Aligned_cols=164  Identities=27%  Similarity=0.467  Sum_probs=142.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      .+..|||+|+|++|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999888888876 44556677889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 027382           92 MLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMET  157 (224)
Q Consensus        92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  157 (224)
                      ++|||++++++++.+.. |+..+.. ...+.|+++|+||+|+.+            .......+...+++.++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999987 5554544 445799999999999743            23466778889999887 789999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027382          158 SALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       158 s~~~~~~v~~~~~~i~~~i~  177 (224)
                      ||++|.||+++|..+++.++
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998773

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=204.59  Aligned_cols=167  Identities=38%  Similarity=0.649  Sum_probs=132.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +.+||+++|++|||||||+++|.++.+...+.++.+.......... +.....+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            3689999999999999999999999988888887766666555544 445678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSL-RAVPTEDAQEFAQREN-LFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~  166 (224)
                      +|||++++.+++.+..|+..+....    ..++|+++++||+|+.+. +.+..++++++++.++ ++|++|||++|.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999998876532    257899999999999764 3477889999999986 789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027382          167 TAFLTVLTEIYRII  180 (224)
Q Consensus       167 ~~~~~i~~~i~~~~  180 (224)
                      ++|.+|++.++++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-33  Score=204.81  Aligned_cols=168  Identities=41%  Similarity=0.684  Sum_probs=150.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAF  169 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~  169 (224)
                      ||.+++.++..+..|+..+.+..    ..++|+++|+||+|+.+ +.+..++..+++.. .+++|++|||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998776543    24689999999999866 55677778877755 57899999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027382          170 LTVLTEIYRIISKK  183 (224)
Q Consensus       170 ~~i~~~i~~~~~~~  183 (224)
                      .++++.+++.....
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999888876544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-32  Score=201.21  Aligned_cols=163  Identities=25%  Similarity=0.417  Sum_probs=141.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++++.+.+...+.++.+ ........+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888888865 44555667788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 027382           95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMETSALE  161 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~~  161 (224)
                      ||+++++|++.+..|+.........+.|+++|+||+|+..            .+.++.+++..++++++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998765544444445899999999999853            35688899999999987 4799999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 027382          162 ATN-VETAFLTVLTEIYR  178 (224)
Q Consensus       162 ~~~-v~~~~~~i~~~i~~  178 (224)
                      |.+ ++++|+.++..+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.6e-31  Score=191.37  Aligned_cols=163  Identities=21%  Similarity=0.323  Sum_probs=135.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+++|++|||||||+++++++.+.. +.++.+. .....+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccce-eEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            36999999999999999999999998754 3444343 44567778999999999999998654     37888999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHH
Q 027382           94 VYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGS--LRAVPTEDAQEFAQR-ENLFFMETSALEATNVET  167 (224)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~  167 (224)
                      |||+++++|++.+..|+..+....   ...+|+++|+||.|+..  .+.+..++++.++.. ++++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988776443   35789999999988743  456788889999765 568999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 027382          168 AFLTVLTEIYRIISKK  183 (224)
Q Consensus       168 ~~~~i~~~i~~~~~~~  183 (224)
                      +|..+++.+.......
T Consensus       157 ~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999998776543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=186.43  Aligned_cols=155  Identities=21%  Similarity=0.393  Sum_probs=128.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.+...  +.  ...+.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--ee--eeeEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999888888887765543  22  3467899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVETA  168 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      ||+++++++..+..|+..+.+.. ..+.|+++|+||.|+.+..  ...++.+..     ...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999999887775543 3689999999999986432  334333332     223557999999999999999


Q ss_pred             HHHHHHH
Q 027382          169 FLTVLTE  175 (224)
Q Consensus       169 ~~~i~~~  175 (224)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=6.2e-31  Score=192.35  Aligned_cols=166  Identities=22%  Similarity=0.341  Sum_probs=130.5

Q ss_pred             CcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382            3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS   82 (224)
Q Consensus         3 ~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   82 (224)
                      +.++.+..+.+..+||+++|++|||||||+++|.++.+...+ ++.+.+..  .  +....+.+.+||++|++.+...+.
T Consensus         4 ~~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~--~--i~~~~~~~~i~d~~g~~~~~~~~~   78 (176)
T d1fzqa_           4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIK--S--VQSQGFKLNVWDIGGQRKIRPYWR   78 (176)
T ss_dssp             CHHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEEEE--E--EEETTEEEEEEECSSCGGGHHHHH
T ss_pred             HHHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeeeEE--E--eccCCeeEeEeeccccccchhHHH
Confidence            445566677888999999999999999999999988774333 33344333  2  233457899999999999999999


Q ss_pred             hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEE
Q 027382           83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFME  156 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (224)
                      .+++.+|++++|||++++.++..+..|+..+.... ..++|+++++||+|+.+..  ......+..     ....+++++
T Consensus        79 ~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~  156 (176)
T d1fzqa_          79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQS  156 (176)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEE
Confidence            99999999999999999999999988877766544 3679999999999997533  233333322     223457999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 027382          157 TSALEATNVETAFLTVLTE  175 (224)
Q Consensus       157 ~s~~~~~~v~~~~~~i~~~  175 (224)
                      +||++|+|++++|++|++.
T Consensus       157 ~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         157 CSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             CCTTTCTTHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHHHHHHhc
Confidence            9999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=183.48  Aligned_cols=157  Identities=22%  Similarity=0.369  Sum_probs=124.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|++|||||||+++|.+..+ ....+|.+.....    ++...+.+.+||+||++.++..+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEE----EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeee----ccccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999998765 3455665544332    334567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETA  168 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~  168 (224)
                      ||+++..++.....++..+.. ....+.|+++|+||.|+.+..  ..++......     ..++++++|||++|+|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999888887655543 334679999999999997533  3444443322     22457899999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          169 FLTVLTEIYR  178 (224)
Q Consensus       169 ~~~i~~~i~~  178 (224)
                      |++|++.+.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.4e-29  Score=186.12  Aligned_cols=162  Identities=19%  Similarity=0.335  Sum_probs=124.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG   90 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   90 (224)
                      ..+..+||+++|++|||||||+++|.+..... ..+|.+......    ....+.+.+||+||++.+...+..++..+|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETL----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEEE----EETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEEE----eeCCEEEEEEecccccccchhHHhhhcccee
Confidence            35568999999999999999999998877643 345555444332    2345789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCC
Q 027382           91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATN  164 (224)
Q Consensus        91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  164 (224)
                      +++|||++++.++.....|+..+.+.. ..+.|+++++||+|+.+  ..+..++.+..     ...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999999988876655433 46799999999999964  23444444332     23456799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEIYRI  179 (224)
Q Consensus       165 v~~~~~~i~~~i~~~  179 (224)
                      ++++|++|++.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999888654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=182.65  Aligned_cols=157  Identities=22%  Similarity=0.414  Sum_probs=123.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ...+||+++|++|||||||+++|.++.... ..+|.+.....    .....+.+.+||+||+..++..+..+++.+|+++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            346999999999999999999999877543 33443443322    3345578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEF-----AQRENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  166 (224)
                      +|+|+++.+++..+..|+..+.+.. ..+.|+++++||+|+++.  ....++...     +...++.+++|||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            9999999999999998887765543 467999999999999743  233333332     22235578999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999997653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=171.20  Aligned_cols=153  Identities=17%  Similarity=0.317  Sum_probs=122.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~   95 (224)
                      +||+++|++|||||||+++|.++.+...+......     ....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999998876554443221     2234567788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEcCCCCCCHHHHH
Q 027382           96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQE-----FAQRENLFFMETSALEATNVETAF  169 (224)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~~  169 (224)
                      |.+++.++..+..|+..+.... ....|+++++||.|+.+..  ...++..     +++..+++++++||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999999988877665544 3678999999999987533  2333322     333456789999999999999999


Q ss_pred             HHHHHH
Q 027382          170 LTVLTE  175 (224)
Q Consensus       170 ~~i~~~  175 (224)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T d1r8sa_         154 DWLSNQ  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=1e-24  Score=158.85  Aligned_cols=157  Identities=22%  Similarity=0.348  Sum_probs=118.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      +..+||+|+|.+|||||||+++|.++.+.... ++.+.....    .....+.+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE----IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSSCEE----EEETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceeEEE----EeecceEEEEeccccccccccchhhhhccceeee
Confidence            44589999999999999999999998775433 222322222    2224578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382           93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE  166 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  166 (224)
                      +++|.++..++.....++....... ....|+++|+||+|++...  ...+..+...     ..+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999999988877665554433 3689999999999986433  3444444432     234579999999999999


Q ss_pred             HHHHHHHHHH
Q 027382          167 TAFLTVLTEI  176 (224)
Q Consensus       167 ~~~~~i~~~i  176 (224)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=155.69  Aligned_cols=156  Identities=19%  Similarity=0.324  Sum_probs=120.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|.+|||||||++++.++.+... .++.+....    ......+.+.+||.+|.......+...+..+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE----TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE----EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeee----eeccCceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            48999999999999999999999887543 233332222    2333557889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHH-----HHHHHcCCeEEEEcCCCCCCHHHH
Q 027382           95 YDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQ-----EFAQRENLFFMETSALEATNVETA  168 (224)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~  168 (224)
                      +|+.+..++.....++..... ......|+++++||.|+.+...  ..++.     .++...+++|+++||++|.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999998888877775544443 3346789999999999975332  22222     233445678999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          169 FLTVLTEIY  177 (224)
Q Consensus       169 ~~~i~~~i~  177 (224)
                      |++|++.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.6e-24  Score=157.09  Aligned_cols=156  Identities=18%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--------RYRAVTSAYYR   86 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~   86 (224)
                      .-.|+|+|.+|||||||+|+|++.......... +.+..............+.+|||||..        .+.......+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP-QTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-CCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccC-Ccccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            346999999999999999999987654322111 122222222222344678999999953        22333455678


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 027382           87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNV  165 (224)
Q Consensus        87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v  165 (224)
                      .+|++++|+|++++.... ...|+..++.. ..+.|+++|+||+|+...   ..+..+.+.+..+ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~-~~~i~~~l~~~-~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPE-DELVARALKPL-VGKVPILLVGNKLDAAKY---PEEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHH-HHHHHHHHGGG-TTTSCEEEEEECGGGCSS---HHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhccc-ccchhhheecc-ccchhhhhhhcccccccC---HHHHHHHHHhhcccCceEEEecCCCCCH
Confidence            999999999998754432 23344555443 346899999999998542   2233444555554 46899999999999


Q ss_pred             HHHHHHHHHHH
Q 027382          166 ETAFLTVLTEI  176 (224)
Q Consensus       166 ~~~~~~i~~~i  176 (224)
                      +++++.|++.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999887543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.7e-23  Score=150.05  Aligned_cols=151  Identities=20%  Similarity=0.266  Sum_probs=119.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD   96 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d   96 (224)
                      ||+++|++|||||||+++|.++.+. ...++.+.+..    ......+.+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998764 34455443333    344556778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcCCCCC
Q 027382           97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------------ENLFFMETSALEAT  163 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~~~  163 (224)
                      .++..++.....++....... ..+.|++++++|.|+..  .....++.+....            ..+++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999888888776666544 36799999999999864  3344554433321            22468999999999


Q ss_pred             CHHHHHHHHHH
Q 027382          164 NVETAFLTVLT  174 (224)
Q Consensus       164 ~v~~~~~~i~~  174 (224)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.8e-25  Score=164.07  Aligned_cols=160  Identities=19%  Similarity=0.207  Sum_probs=125.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|..|||||||+++|..+.+  .+.||.|.....    +....+.+++||++|++.++..+..++..+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            58999999999999999999988876  467888866543    345668899999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC----------------CCCCHHHHHHHH
Q 027382           95 YDMTKRQ-----------SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL----------------RAVPTEDAQEFA  147 (224)
Q Consensus        95 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----------------~~~~~~~~~~~~  147 (224)
                      +|.++.+           ..+....|...+.+....+.|+++++||.|+.+.                ..........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998754           3455566777777766678999999999997311                122333344433


Q ss_pred             HH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          148 QR----------ENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       148 ~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ..          ..+.+++|||++|.|+.++|+.+.+.|.+..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            21          2345789999999999999999998887653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.4e-24  Score=158.28  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=115.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV   94 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v   94 (224)
                      .+||+++|..|||||||+++|....++..     +.    .+..++...+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            68999999999999999999987665433     22    2233445667899999999999999999999999999999


Q ss_pred             EeCCChhhH-----------HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC---------------CCCCCHHHHHHHH-
Q 027382           95 YDMTKRQSF-----------DHMARWLDELRGHADKNIVIMLIGNKCDLGS---------------LRAVPTEDAQEFA-  147 (224)
Q Consensus        95 ~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------------~~~~~~~~~~~~~-  147 (224)
                      +|.++.+++           +....|...+........|+++++||.|+..               .......+...+. 
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999987654           2233455555555557899999999998621               0112223322221 


Q ss_pred             ----HH------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          148 ----QR------ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       148 ----~~------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                          ..      .++++++|||+++.||+++|+.+.+.|++.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                11      134577999999999999999999887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.7e-25  Score=157.57  Aligned_cols=151  Identities=20%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYRG   87 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~   87 (224)
                      +||+++|.+|||||||+|+|++......+..+ +.+.......+......+.++|+||....        ......++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeeccc-ccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            79999999999999999999987754322211 22222222333334467889999993221        2224456789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|++++++|..+..+......|...+.... .+.|+++|+||+|+.+....       +.+..+.+++++||++|.|+++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~~  152 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVDV  152 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHHH
Confidence            999999999998877776666655555443 47899999999998543221       1112356799999999999999


Q ss_pred             HHHHHHHH
Q 027382          168 AFLTVLTE  175 (224)
Q Consensus       168 ~~~~i~~~  175 (224)
                      ++++|.+.
T Consensus       153 L~~~l~~~  160 (161)
T d2gj8a1         153 LRNHLKQS  160 (161)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.7e-23  Score=153.03  Aligned_cols=156  Identities=15%  Similarity=0.098  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d   89 (224)
                      +|+++|.+|||||||+|+|++...........+.... ...........+.+||+||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN-LGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE-EEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeee-eceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999987654433333222222 2222334455788999999321       1122345578899


Q ss_pred             EEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           90 GAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        90 ~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      ++++++|....  +.......|+...... ..+.|+++|+||+|+.+..  ..++..+...+.+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998762  3444444444332211 1257899999999996432  23445566667788999999999999999


Q ss_pred             HHHHHHHHH
Q 027382          168 AFLTVLTEI  176 (224)
Q Consensus       168 ~~~~i~~~i  176 (224)
                      +++.|.+.+
T Consensus       159 L~~~i~~~l  167 (180)
T d1udxa2         159 LKEALHALV  167 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887665

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=1.7e-22  Score=147.61  Aligned_cols=157  Identities=22%  Similarity=0.255  Sum_probs=113.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM   92 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   92 (224)
                      ....||+++|.+|||||||+++|.+..+... .++.+.+...  +...  ...+.+||+.++..+...+..+++..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEE--LTIA--GMTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEET--TEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeE--EEec--ccccccccccchhhhhhHHhhhhcccceee
Confidence            4468999999999999999999998876543 3443433333  2333  356789999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----------------CCeE
Q 027382           93 LVYDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-----------------NLFF  154 (224)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~  154 (224)
                      +++|.++...+.....++..... ....+.|+++++||.|++.  .....++.+.....                 ++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888887775554443 3346899999999999864  34455555544321                 2358


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027382          155 METSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       155 ~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++|||++|+|++++|++|.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.6e-23  Score=154.22  Aligned_cols=160  Identities=20%  Similarity=0.255  Sum_probs=112.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML   93 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   93 (224)
                      +.+||+++|++|||||||+++|.   +...+.||.|.....    ++...+.+.+||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~----~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEE----EEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEE----EeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            36899999999999999999993   456677888854432    33466789999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCC----------------CCCCHHHHHHH
Q 027382           94 VYDMTKRQS----------FDHMARWLDELRG-HADKNIVIMLIGNKCDLGSL----------------RAVPTEDAQEF  146 (224)
Q Consensus        94 v~d~~~~~s----------~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~----------------~~~~~~~~~~~  146 (224)
                      +++.++...          +.....++..+.+ ....+.|+++++||.|+.+.                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987433          4444455444433 33468999999999997311                11223344443


Q ss_pred             HHH-----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          147 AQR-----------ENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       147 ~~~-----------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ...           ..+.+++|||+++.||.++|+.+.+.|.+..
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            332           1245678999999999999999988887653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3.6e-23  Score=149.97  Aligned_cols=156  Identities=20%  Similarity=0.214  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhHhHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTSAYYRG   87 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~   87 (224)
                      .|+|+|++|||||||+++|++.......... +.+.......+......+.+||++|.         ..+.......+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-GVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccC-ceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            5899999999999999999986653222111 22322223334445667899999982         2223344556789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382           88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus        88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +|+++++++.+...... ...++..+...   +.|+++|+||+|+.++  ...+...++.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeeccccccccc-ccccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            99999999987643332 23444445443   5899999999998531  111222233333334689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          168 AFLTVLTEIYRI  179 (224)
Q Consensus       168 ~~~~i~~~i~~~  179 (224)
                      ++++|++.+.+.
T Consensus       155 L~~~i~~~l~e~  166 (171)
T d1mkya1         155 MLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCC
Confidence            999999877554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=7.7e-23  Score=149.34  Aligned_cols=161  Identities=14%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC-----cceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT-----IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA   88 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   88 (224)
                      ..++|+++|++++|||||+|+|++.........+     .+.+.......+......+.++|+||+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            4679999999999999999999964432221111     11111111112223346788999999999988889999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH----cCCeEEEEcCCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR----ENLFFMETSALEA  162 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~----~~~~~~~~s~~~~  162 (224)
                      |++++|+|+++...... ++.+..+...   ++|+++|+||+|+.+....  ..+..+++.+.    .+.+++++||++|
T Consensus        84 d~~ilv~d~~~g~~~~~-~~~~~~~~~~---~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g  159 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQT-GEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG  159 (179)
T ss_dssp             CEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC
T ss_pred             cccccccccccccchhh-hhhhhhhhhc---CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCC
Confidence            99999999998533322 2333333332   6899999999998642211  01112233322    2357999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEIYR  178 (224)
Q Consensus       163 ~~v~~~~~~i~~~i~~  178 (224)
                      +|++++++.|++.+.+
T Consensus       160 ~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         160 FGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCc
Confidence            9999999999877644

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=3.4e-22  Score=146.60  Aligned_cols=161  Identities=20%  Similarity=0.151  Sum_probs=104.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh------------
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY------------   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------   77 (224)
                      +....+||+++|++|||||||+|+|++..... ...+.............+  +..+.++|+||....            
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--GRKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--TEEEEESSCSCC-----------CCSC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccC--CceeeeeccCCccccccccccccccch
Confidence            34457999999999999999999999876432 222221112122223333  345788899984322            


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENL  152 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~  152 (224)
                      .......++.+|++++|+|++.+.. .....++..+...   +.|+++|+||+|+.........+..+...+     ...
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             hHHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCC
Confidence            2334555788999999999986433 2233344444432   689999999999865444444555444433     135


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382          153 FFMETSALEATNVETAFLTVLTEIY  177 (224)
Q Consensus       153 ~~~~~s~~~~~~v~~~~~~i~~~i~  177 (224)
                      +++++||++|.|++++++.|.+.+.
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999865543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.8e-22  Score=144.57  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=98.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hhhhHhHh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---------RAVTSAYY   85 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~   85 (224)
                      +||+++|.+|||||||+|+|++...... ..+.............  ....+.+||+||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--RGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe--CCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999998664322 2222222222223333  4467889999993211         11223346


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV  165 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  165 (224)
                      ..+|++++|+|++++.......-+ ..+     ...++++++||.|+.+..  ..+++.+.. ..+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~~-~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKI--NEEEIKNKL-GTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCC--CHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchh--hhHHHHHHh-CCCCcEEEEECCCCCCH
Confidence            789999999999987655433222 222     257899999999997532  334333322 23467999999999999


Q ss_pred             HHHHHHHHH
Q 027382          166 ETAFLTVLT  174 (224)
Q Consensus       166 ~~~~~~i~~  174 (224)
                      ++++++|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.6e-21  Score=142.59  Aligned_cols=150  Identities=20%  Similarity=0.181  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------------hhhhhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------------ERYRAVT   81 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------------~~~~~~~   81 (224)
                      .|+++|.+|||||||+|+|++........+.  .|.....+...    .+.+||+||.               ..+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g--~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCC--Eeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999988765444332  33333333232    3578999993               1112223


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHH----------HHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHM----------ARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN  151 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (224)
                      ...++.+|++++|+|.+.+......          ...+..+.+   .+.|+++|+||+|+.+..   ......+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhH---HHHHHHHHHHhc
Confidence            4456789999999999764322221          122333333   368999999999975322   122222333322


Q ss_pred             -------CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          152 -------LFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       152 -------~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                             ..++++||++|.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   248899999999999999999887754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=9.6e-22  Score=148.67  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEE----------------EECCeEEEEEEEeCCChhhhhhhh
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL----------------SIDHKTVKAQIWDTAGQERYRAVT   81 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~D~~G~~~~~~~~   81 (224)
                      |+|+|++++|||||+++|++....................                .++.....+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998753322111111111111111                123445678999999999988888


Q ss_pred             HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH--------------------H
Q 027382           82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT--------------------E  141 (224)
Q Consensus        82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--------------------~  141 (224)
                      ...+..+|++|+|+|+.+.-.... ...+..+...   ++|+++++||+|+.+......                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999987433332 3333334432   689999999999864332110                    0


Q ss_pred             HHHHHHH----H--------------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          142 DAQEFAQ----R--------------ENLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       142 ~~~~~~~----~--------------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                      ...+...    .              ..++++++||++|.|++++++.+.....+.+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            0111111    0              0136899999999999999998876654443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.4e-20  Score=137.52  Aligned_cols=118  Identities=18%  Similarity=0.275  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhHhcCCCEEEEEE
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-AVTSAYYRGAVGAMLVY   95 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~vi~v~   95 (224)
                      +|+++|++|||||||+++|+++.+...+ ++.+.+.....+ .+...+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998875543 554555443332 24567789999999998775 56788889999999999


Q ss_pred             eCCChhh-HHHHHHHHHH-HHhc--CCCCCcEEEEEeCCCCCCCC
Q 027382           96 DMTKRQS-FDHMARWLDE-LRGH--ADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        96 d~~~~~s-~~~~~~~~~~-~~~~--~~~~~p~ilv~nK~D~~~~~  136 (224)
                      |+++..+ +....+++.. +...  ....+|+++++||+|++...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            9999665 3444444433 3222  23468999999999997543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=9.9e-22  Score=148.04  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=115.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA   91 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   91 (224)
                      ++..+||+++|+.|||||||++++....    ..||.|....  .+.+  ..+.+.+||++|+..++..|..++..++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~--~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET--KFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE--EEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE--EEEE--CcEEEEEEecCccceeccchhhhcccccce
Confidence            4567899999999999999999997654    3467675433  3333  457899999999999999999999999999


Q ss_pred             EEEEeCCChh----------hHHHHHHHHHH-HHhcCCCCCcEEEEEeCCCCCCCC------------------------
Q 027382           92 MLVYDMTKRQ----------SFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLR------------------------  136 (224)
Q Consensus        92 i~v~d~~~~~----------s~~~~~~~~~~-~~~~~~~~~p~ilv~nK~D~~~~~------------------------  136 (224)
                      ++|+|.++.+          .+.+...++.. +.+....++|++|++||+|+.+++                        
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            9999998632          23344443333 333334689999999999983211                        


Q ss_pred             ------CCCHHHHHHHH-----HHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382          137 ------AVPTEDAQEFA-----QRE--------NLFFMETSALEATNVETAFLTVLTEIYRII  180 (224)
Q Consensus       137 ------~~~~~~~~~~~-----~~~--------~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~  180 (224)
                            .....++..+.     ..+        .+.++++||.++.++..+|+.+.+.|++..
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                  00122333332     211        134678999999999999999988887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.84  E-value=2e-20  Score=138.15  Aligned_cols=163  Identities=18%  Similarity=0.164  Sum_probs=107.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc---c--CCcceeeEEEEEE-------------------ECCeEEEEE
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS---K--ATIGVEFQTKTLS-------------------IDHKTVKAQ   67 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~---~--~~~~~~~~~~~~~-------------------~~~~~~~~~   67 (224)
                      +...++|+++|+.++|||||+++|++.......   .  .+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            356789999999999999999999874322111   0  1111111111110                   112346789


Q ss_pred             EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHH
Q 027382           68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQE  145 (224)
Q Consensus        68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~  145 (224)
                      ++|+||+..|.......+..+|++++|+|+.+........+.+..+....  ..+++++.||+|+.+....  ....+.+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999888888999999999999998533333444444444332  2457889999998653211  1223344


Q ss_pred             HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          146 FAQRE---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       146 ~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      +....   .++++++||++|+|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            44443   35799999999999999988877643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=7.8e-21  Score=139.18  Aligned_cols=155  Identities=15%  Similarity=0.092  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----h---hhHhHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----A---VTSAYYRGAV   89 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~---~~~~~~~~~d   89 (224)
                      +|+++|.+|||||||+|+|.+........+..+.........+ .....+.+|||||.....    .   .....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe-cCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999987754443333222222222222 233467899999953221    1   1223345788


Q ss_pred             EEEEEEeCCChhhHHHHHH-----HHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEcCCCC
Q 027382           90 GAMLVYDMTKRQSFDHMAR-----WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFMETSALEA  162 (224)
Q Consensus        90 ~vi~v~d~~~~~s~~~~~~-----~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~  162 (224)
                      .++++++....+.......     ...........++|+++|+||+|+.+.    .+..+.+.+..  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCC
Confidence            9988888765333222211     111122222246899999999998642    23344555443  567899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027382          163 TNVETAFLTVLTEI  176 (224)
Q Consensus       163 ~~v~~~~~~i~~~i  176 (224)
                      .|++++++.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         158 EGLRELLFEVANQL  171 (185)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=6.5e-20  Score=135.34  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=94.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------h---hh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------E---RY   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~---~~   77 (224)
                      +.+...+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|.          +   .+
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhH
Confidence            444556899999999999999999998653222222222332322232322   2345666551          1   11


Q ss_pred             hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCe
Q 027382           78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR----ENLF  153 (224)
Q Consensus        78 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~~~~  153 (224)
                      .......+..+|++++|+|++.+.. .....+++.+...   ++|+++|+||+|+...... .+..+.+.+.    ...+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSE
T ss_pred             Hhhhhccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCC
Confidence            2223344567799999999986432 2223455555543   6899999999998543322 2223333332    3457


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 027382          154 FMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       154 ~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ++++||++|.|+++++++|.+.+
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999988765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=1.5e-19  Score=134.36  Aligned_cols=161  Identities=16%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---cceeeE--EEEEEE------------------------CCeEE
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---IGVEFQ--TKTLSI------------------------DHKTV   64 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~--~~~~~~------------------------~~~~~   64 (224)
                      +-++|+++|+.++|||||+++|++..........   ......  ......                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            4469999999999999999999873321111000   000000  000000                        11235


Q ss_pred             EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHH
Q 027382           65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTED  142 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~  142 (224)
                      .+.++|+||+..|.......+..+|++|+|+|+.+.-.....++.+..+....  -.|+++++||+|+.+....  ...+
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHH
Confidence            78999999999998888888999999999999987532223333334343322  2478999999999642211  0112


Q ss_pred             HHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          143 AQEFAQRE---NLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       143 ~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      ..++....   +++++++||++|.|++++++.+.+.+
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            22333322   36799999999999999998877653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=2.4e-20  Score=137.31  Aligned_cols=158  Identities=17%  Similarity=0.081  Sum_probs=110.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC-----CC---------CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN-----EF---------SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      +-++|+++|+.++|||||+++|++.     ..         ........|++.......+.+....+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            3589999999999999999999751     00         011122336666666677777788999999999999988


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-----
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV---PTEDAQEFAQREN-----  151 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~-----  151 (224)
                      .....+..+|++++|+|+.+...- +.++.+..+....  ..|+++++||+|+......   -..+++.+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            888889999999999999975433 2344444444332  3578999999998642221   1123445555443     


Q ss_pred             CeEEEEcCCCC----------CCHHHHHHHHHH
Q 027382          152 LFFMETSALEA----------TNVETAFLTVLT  174 (224)
Q Consensus       152 ~~~~~~s~~~~----------~~v~~~~~~i~~  174 (224)
                      ++++++|+++|          .++.++++.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            57999999987          366766666544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=1.2e-18  Score=130.54  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=102.8

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------ccCCcceeeEEEEE
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-------------------------------SKATIGVEFQTKTL   57 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~   57 (224)
                      +.+.+..+||+++|+.++|||||+++|+...-...                               .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            34567899999999999999999999974211000                               00111233333333


Q ss_pred             EECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCC
Q 027382           58 SIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLR  136 (224)
Q Consensus        58 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~  136 (224)
                      .+......+.++|+||+..|.......+..+|++|+|+|+.+...-+. .+.+..+...   +++ +++++||+|+.+..
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~~---gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTTTSC
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHHc---CCCEEEEEEEcccccccc
Confidence            344556789999999999999999999999999999999987433332 3333333332   343 88999999997533


Q ss_pred             CCCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382          137 AVPT----EDAQEFAQREN-----LFFMETSALEATNVE  166 (224)
Q Consensus       137 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~  166 (224)
                      +...    .++..++...+     ++|+++||++|.|+.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            2212    23445555554     368999999999874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1e-19  Score=135.03  Aligned_cols=143  Identities=17%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC------CCCcc---------CCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEF------SVDSK---------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR   78 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   78 (224)
                      +.|||+++|++++|||||+++|+...-      .....         ...|++.......+.+....+.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            458999999999999999999974210      00000         011555555555666777889999999999999


Q ss_pred             hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC---
Q 027382           79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQREN---  151 (224)
Q Consensus        79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~---  151 (224)
                      ......+..+|++|+|+|+.+.-..+..+ .+..+...   ++| +++++||+|+.+..+.   -.++++.+...++   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            98999999999999999999865554433 33444333   465 7778999998642211   0123444454443   


Q ss_pred             --CeEEEEcCC
Q 027382          152 --LFFMETSAL  160 (224)
Q Consensus       152 --~~~~~~s~~  160 (224)
                        +++++.|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              457888764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.1e-18  Score=126.70  Aligned_cols=156  Identities=22%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hhhhHhHh
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---------RAVTSAYY   85 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~   85 (224)
                      --.|+++|.+|||||||+|+|++...........+.......... .....+..+|++|....         ........
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeee-cCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence            345899999999999999999987654333222222222222222 22334566888873222         11122223


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCC
Q 027382           86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATN  164 (224)
Q Consensus        86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  164 (224)
                      ..+++++++.|..+....  ...+...+.+   ...|.++++||.|....+.......+.+..+.+ .+++++||++|.|
T Consensus        84 ~~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hhcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            467888888887753322  2222233333   257889999999976533222333445555555 5799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027382          165 VETAFLTVLTEI  176 (224)
Q Consensus       165 v~~~~~~i~~~i  176 (224)
                      ++++++.|.+.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999998877643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3.4e-17  Score=125.69  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQER   76 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   76 (224)
                      ++.-||+++|+.++|||||+.+|+...-....                ....+.++......+.+.+..++++||||+..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            34558999999999999999999752211110                01113334444445566778899999999999


Q ss_pred             hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      |.......++.+|++|+|+|+.+.-.....+-| +...+   .++|.++++||+|.+
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            999999999999999999999986655554444 33333   279999999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=1.2e-16  Score=122.30  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cCC----------cceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDS------KAT----------IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA   79 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   79 (224)
                      -+|+++|+.++|||||+.+|+...-....      ..+          .+.+.......+.+....+.++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            36999999999999999999753211110      000          13344444444555667899999999999999


Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG  133 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~  133 (224)
                      .....++.+|++|+|+|+.+.-.....+.|. ...+.   ++|.++++||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---cccccccccccccc
Confidence            9999999999999999999866655545453 33332   69999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.5e-17  Score=125.78  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=103.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------Cc------------cCCcceeeEEEEEEECCeE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEF--SV---------------DS------------KATIGVEFQTKTLSIDHKT   63 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~--~~---------------~~------------~~~~~~~~~~~~~~~~~~~   63 (224)
                      ...++|+++|+.++|||||+.+|+...-  ..               ..            ....|.+.......+....
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            3458999999999999999999974211  00               00            0112555555555566677


Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLR  136 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~  136 (224)
                      +++.++|+||+..|.......+..+|++|+|+|+.+..-      ..+.++.+......   ++| +++++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            899999999999999999999999999999999986421      11233333333332   454 78899999986533


Q ss_pred             CCCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 027382          137 AVPT----EDAQEFAQREN-----LFFMETSALEATNVET  167 (224)
Q Consensus       137 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  167 (224)
                      ....    .++..+....+     ++++++|+.+|.|+.+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            2222    23445555544     4689999999988643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.8e-17  Score=117.30  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-------hhhhhhh--
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-------QERYRAV--   80 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-------~~~~~~~--   80 (224)
                      -+.+..++|+++|.+|||||||+|+|++...........+................+..++.++       .......  
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            3577889999999999999999999998765433322222222222222222222222222222       1111111  


Q ss_pred             -hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHc--CCeEE
Q 027382           81 -TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP--TEDAQEFAQRE--NLFFM  155 (224)
Q Consensus        81 -~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~~  155 (224)
                       ........+.++.+.+...... .....++..+...   ..++++++||+|+.+.....  .+.+.+.....  ..+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhhhheeEEEEeecccccch-hHHHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence             1222234445555666554322 2233444444433   57899999999985421111  11122222222  24689


Q ss_pred             EEcCCCCCCHHHHHHHHHHH
Q 027382          156 ETSALEATNVETAFLTVLTE  175 (224)
Q Consensus       156 ~~s~~~~~~v~~~~~~i~~~  175 (224)
                      ++||++|.|++++++.|.+.
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999887654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.8e-17  Score=119.88  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhH----hcCCCEE
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAY----YRGAVGA   91 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~~~d~v   91 (224)
                      -.|+++|++|||||||+|+|.+....+.    .+...  ....+......+.+||+||+..+...+..+    ...++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE--PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSS--CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecc--eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            3789999999999999999998775422    12222  222345566678999999988765555444    3456889


Q ss_pred             EEEEeCCC-hhhHHHHHHHHH----HHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           92 MLVYDMTK-RQSFDHMARWLD----ELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        92 i~v~d~~~-~~s~~~~~~~~~----~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      ++++|..+ ..+++....|+.    .+......++|+++|+||+|+.+.
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            99999775 555565555543    334444568999999999999753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=1.5e-16  Score=120.73  Aligned_cols=154  Identities=19%  Similarity=0.162  Sum_probs=86.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCeE
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHKT   63 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   63 (224)
                      ...++|+++|+.++|||||+.+|+...-..                             ......+.+.......+.+..
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            356799999999999999999995421100                             000111222222233334555


Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH------HHHHHHHHHHHhcCCCCC-cEEEEEeCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF------DHMARWLDELRGHADKNI-VIMLIGNKCDLGSLR  136 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~  136 (224)
                      ..+.++|+||+..|..........+|++++|+|+.+...-      ....+.+..+...   ++ ++++++||+|+....
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccc
Confidence            7899999999999999888899999999999999873211      1233333333332   34 478999999986422


Q ss_pred             CCCHH-------HHHHHHHHc-------CCeEEEEcCCCCCCHHHHHH
Q 027382          137 AVPTE-------DAQEFAQRE-------NLFFMETSALEATNVETAFL  170 (224)
Q Consensus       137 ~~~~~-------~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~  170 (224)
                      . ..+       ++..+..+.       .++++++||++|+|+.++++
T Consensus       179 ~-~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 W-SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             h-hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            1 222       222232222       24799999999999876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=5.4e-17  Score=121.96  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=96.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCeEEE
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHKTVK   65 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (224)
                      .++|+++|+.++|||||+.+|+...-..                             ......|.+.......++...+.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            6899999999999999999996421100                             00111244444444555666788


Q ss_pred             EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-
Q 027382           66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-  138 (224)
Q Consensus        66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-  138 (224)
                      +.++||||+..|.......+.-+|++|+|+|+.+...      +....+.+.......  ..++++++||+|+...... 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~--~~~iIv~iNK~D~~~~~~~~  160 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG--LDQLIVAVNKMDLTEPPYDE  160 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTCEEEEECGGGSSSTTCH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC--CCceEEEEEcccCCCccccH
Confidence            9999999999999999999999999999999997421      123333333333221  3458889999998642211 


Q ss_pred             -CH----HHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382          139 -PT----EDAQEFAQREN-----LFFMETSALEATNVE  166 (224)
Q Consensus       139 -~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~  166 (224)
                       ..    .++..+...++     ++++++||..|.|+.
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence             11    22334444443     468999999999874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=5.3e-16  Score=122.50  Aligned_cols=124  Identities=19%  Similarity=0.241  Sum_probs=87.4

Q ss_pred             ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------c------cCCcceeeEEEEEEE-----------
Q 027382            5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------S------KATIGVEFQTKTLSI-----------   59 (224)
Q Consensus         5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------~------~~~~~~~~~~~~~~~-----------   59 (224)
                      ...++.+.+..-+|+|+|+.++|||||+.+|+...-...        +      ....+.+.....+.+           
T Consensus         7 ~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~   86 (341)
T d1n0ua2           7 MRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKE   86 (341)
T ss_dssp             HHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHH
T ss_pred             HHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccc
Confidence            345566667766899999999999999999973111000        0      000122222111111           


Q ss_pred             -----CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382           60 -----DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL  132 (224)
Q Consensus        60 -----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~  132 (224)
                           ++..+.+.++||||+..|.......++-+|++++|+|+.++-.....+-|......    ++|+++++||+|.
T Consensus        87 ~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKiDr  160 (341)
T d1n0ua2          87 IKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKVDR  160 (341)
T ss_dssp             CSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECHHH
T ss_pred             hhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECccc
Confidence                 34678899999999999999999999999999999999986666655555444433    6999999999997

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=3.8e-15  Score=113.94  Aligned_cols=133  Identities=11%  Similarity=0.057  Sum_probs=77.2

Q ss_pred             CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hh
Q 027382            7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RA   79 (224)
Q Consensus         7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~   79 (224)
                      .+++.....++|+|+|.+|+|||||+|.+++.......... +.+..............+.++||||-...       ..
T Consensus        24 ~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~-~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~  102 (257)
T d1h65a_          24 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN  102 (257)
T ss_dssp             HHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS-CCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH
T ss_pred             HHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCC-CcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHH
Confidence            34445567899999999999999999999997765433221 22222222222223467999999993211       11


Q ss_pred             hhHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCCCCCCCH
Q 027382           80 VTSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        80 ~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~~~~~~~  140 (224)
                      ....+  ....++++||++++...--......+..+.+..+.  -.++++|.||+|.........
T Consensus       103 ~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         103 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            11222  23568899998887532111112222222222221  256899999999865443343

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.9e-14  Score=114.13  Aligned_cols=158  Identities=9%  Similarity=0.115  Sum_probs=90.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---cceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhH
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-----VTSAY   84 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~~~~~   84 (224)
                      +.+++|+|+|.+|+|||||+|+|++..........   .+++.....+.. .....+.+|||||-.....     +....
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            45799999999999999999999986543222111   112222222222 2233578999999543321     22333


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCCCHHH----HHH----HHHH
Q 027382           85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-------SLRAVPTED----AQE----FAQR  149 (224)
Q Consensus        85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-------~~~~~~~~~----~~~----~~~~  149 (224)
                      +..+|.+|++.|..-.+..   ..++..+.+.   +.|+++|.||+|..       .......+.    +++    ...+
T Consensus       133 ~~~~d~~l~~~~~~~~~~d---~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKND---IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             GGGCSEEEEEESSCCCHHH---HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHHH---HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            5678988888775432222   2333444432   68999999999962       111122222    221    2223


Q ss_pred             cCC---eEEEEcCCCC--CCHHHHHHHHHHHHH
Q 027382          150 ENL---FFMETSALEA--TNVETAFLTVLTEIY  177 (224)
Q Consensus       150 ~~~---~~~~~s~~~~--~~v~~~~~~i~~~i~  177 (224)
                      .++   +++.+|..+.  .++.++.+.+.+.+.
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            333   4788887653  477877777766653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.35  E-value=2.3e-13  Score=102.68  Aligned_cols=111  Identities=13%  Similarity=-0.076  Sum_probs=65.5

Q ss_pred             EEEEEEeCCChhhhhhhhHhH---h--cCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRAVTSAY---Y--RGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~---~--~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      ..+.++|+||+..+.......   .  ...+.+++++|+..   +..+.............  ...|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            458899999987663332222   1  24568899999764   33332222111111111  25889999999998642


Q ss_pred             CCCCH-----------------------HHHH---HHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382          136 RAVPT-----------------------EDAQ---EFAQR--ENLFFMETSALEATNVETAFLTVLTEI  176 (224)
Q Consensus       136 ~~~~~-----------------------~~~~---~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~i  176 (224)
                      .....                       ....   ....+  ..++++++||++|+|+++++..|.+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            11000                       0000   00111  246799999999999999998887754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.32  E-value=7.3e-13  Score=103.89  Aligned_cols=158  Identities=14%  Similarity=0.106  Sum_probs=91.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC----CCC-------CCccCC---------------cceeeEEEEEEEC----
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN----EFS-------VDSKAT---------------IGVEFQTKTLSID----   60 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~----~~~-------~~~~~~---------------~~~~~~~~~~~~~----   60 (224)
                      .....++|.|.|+||+|||||+++|...    ...       +.+..+               .....+.......    
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            4457899999999999999999999752    100       000000               0011111111000    


Q ss_pred             --------------CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEE
Q 027382           61 --------------HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI  126 (224)
Q Consensus        61 --------------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv  126 (224)
                                    ..++.+.+++|.|...   ........+|.+++|..+...+..+....-+-.        .+=++|
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq---~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~v  195 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQ---SETAVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSS---CHHHHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEE
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhh---hhhhhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheee
Confidence                          1126688889888532   223345569999999999877655543332211        223889


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382          127 GNKCDLGSLRAVPTEDAQEFAQR----------ENLFFMETSALEATNVETAFLTVLTEIYRI  179 (224)
Q Consensus       127 ~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~  179 (224)
                      +||+|+.+...........+...          ...+++.+|+++|.|++++++.|.+.....
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            99999865332211111222221          234699999999999999999997765443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.2e-12  Score=102.84  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCccCCcce-------------------eeEEEEEEECC--
Q 027382           10 QKIDYVFKVVLIGDSAVGKSQLLARFARN------EFS-VDSKATIGV-------------------EFQTKTLSIDH--   61 (224)
Q Consensus        10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~------~~~-~~~~~~~~~-------------------~~~~~~~~~~~--   61 (224)
                      +...+.++|+|.|+||||||||+++|...      ... ...+|+...                   ..+.......+  
T Consensus        49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~l  128 (327)
T d2p67a1          49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL  128 (327)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred             hccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccc
Confidence            34557899999999999999999999741      110 001111000                   01111100000  


Q ss_pred             ----------------eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEE
Q 027382           62 ----------------KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML  125 (224)
Q Consensus        62 ----------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il  125 (224)
                                      .++.+.+++|.|....   -..+...+|.+++|.++...+..+.....+   .+     ++-++
T Consensus       129 gg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi---~e-----~aDi~  197 (327)
T d2p67a1         129 GGASQRARELMLLCEAAGYDVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGL---ME-----VADLI  197 (327)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHH---HH-----HCSEE
T ss_pred             ccchhhhhHHHHHHHhcCCCeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhh---hc-----cccEE
Confidence                            0134667777764211   234567799999999886655544443332   22     22378


Q ss_pred             EEeCCCCCCCCCCC--HHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382          126 IGNKCDLGSLRAVP--TEDAQEFAQR-------ENLFFMETSALEATNVETAFLTVLTEIYR  178 (224)
Q Consensus       126 v~nK~D~~~~~~~~--~~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~  178 (224)
                      |+||+|++......  ..+.+.....       +..+++.+||.+|.|++++++.|.+....
T Consensus       198 VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         198 VINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             EECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            89999986422110  1112222211       23469999999999999999998765543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=1.2e-10  Score=89.48  Aligned_cols=84  Identities=20%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-------------e--EEEEEEEeCCCh-----
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-------------K--TVKAQIWDTAGQ-----   74 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~l~D~~G~-----   74 (224)
                      .+||+++|.|+||||||++++.+........|+.+.+...-.+.+..             +  ...+.++|+||.     
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999998776544444322221111122211             1  135889999992     


Q ss_pred             --hhhhhhhHhHhcCCCEEEEEEeCC
Q 027382           75 --ERYRAVTSAYYRGAVGAMLVYDMT   98 (224)
Q Consensus        75 --~~~~~~~~~~~~~~d~vi~v~d~~   98 (224)
                        .......-..++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              122334456688999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=3.4e-10  Score=87.76  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECC---------------eEEEEEEEeCCChh-
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDH---------------KTVKAQIWDTAGQE-   75 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~-   75 (224)
                      ...++|+++|.|+||||||+|++.+...+ ....|+.+.+-..-.+.+..               ....+.++|.||.. 
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            45689999999999999999999976542 33334333222222233321               23568899999822 


Q ss_pred             ------hhhhhhHhHhcCCCEEEEEEeCCC
Q 027382           76 ------RYRAVTSAYYRGAVGAMLVYDMTK   99 (224)
Q Consensus        76 ------~~~~~~~~~~~~~d~vi~v~d~~~   99 (224)
                            ......-.-++.+|++|.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                  223345566789999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.7e-10  Score=87.60  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEEC----------C----------------------
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSID----------H----------------------   61 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------~----------------------   61 (224)
                      .-+|+|+|..++|||||+|+|++..+ +....+++..........-.          +                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            33799999999999999999999885 44443432211111111000          0                      


Q ss_pred             -----------------eEEEEEEEeCCChh-------------hhhhhhHhHhcCCCE-EEEEEeCCChhhHHHHHHHH
Q 027382           62 -----------------KTVKAQIWDTAGQE-------------RYRAVTSAYYRGAVG-AMLVYDMTKRQSFDHMARWL  110 (224)
Q Consensus        62 -----------------~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~-vi~v~d~~~~~s~~~~~~~~  110 (224)
                                       ....+.++|+||-.             ....+...|+...+. +++|.+++...+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             01237899999932             223556677777775 45566666545555555555


Q ss_pred             HHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382          111 DELRGHADKNIVIMLIGNKCDLGSLRA  137 (224)
Q Consensus       111 ~~~~~~~~~~~p~ilv~nK~D~~~~~~  137 (224)
                      +.+..   ...++++|+||+|..+...
T Consensus       186 ~~~~~---~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         186 KEVDP---QGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHCT---TCSSEEEEEECGGGSCTTC
T ss_pred             HHhCc---CCCceeeEEeccccccchh
Confidence            55443   2467999999999865433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.00  E-value=8.3e-10  Score=85.86  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=42.6

Q ss_pred             EEEEEeCCChhh-------------hhhhhHhHhcCCCEEEEEE-eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           65 KAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVY-DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        65 ~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      .+.++|+||-..             ...+...|+..++.+++++ +......-.....+...+.   +....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~---~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC---cCCCeEEEEEecc
Confidence            477999999321             2456777889999876665 4333222233344444443   2346799999999


Q ss_pred             CCCCC
Q 027382          131 DLGSL  135 (224)
Q Consensus       131 D~~~~  135 (224)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=3.7e-10  Score=88.41  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce------eeEEEEEE----------------ECCeEEEEEEEeCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV------EFQTKTLS----------------IDHKTVKAQIWDTAG   73 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------~~~~~~~~----------------~~~~~~~~~l~D~~G   73 (224)
                      ++|+++|.|+||||||+|+|.+........|+.+.      ........                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            48999999999999999999997765555453222      11111100                112446799999999


Q ss_pred             hhh-------hhhhhHhHhcCCCEEEEEEeCCC
Q 027382           74 QER-------YRAVTSAYYRGAVGAMLVYDMTK   99 (224)
Q Consensus        74 ~~~-------~~~~~~~~~~~~d~vi~v~d~~~   99 (224)
                      --.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321       12222334579999999999863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.70  E-value=7.5e-09  Score=79.04  Aligned_cols=58  Identities=22%  Similarity=0.424  Sum_probs=37.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG   73 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   73 (224)
                      .+..++|+|+|.|+||||||+|+|.+......... .|.|.....+..+.   .+.++||||
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~-pG~Tr~~~~i~~~~---~~~l~DTPG  166 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVGK---ELELLDTPG  166 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCc-ccccccceEEECCC---CeEEecCCC
Confidence            45789999999999999999999999776443332 26666555454432   488999999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.37  E-value=2.6e-06  Score=59.88  Aligned_cols=23  Identities=26%  Similarity=0.696  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=2.3e-07  Score=67.69  Aligned_cols=146  Identities=15%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC---------------------CcceeeEEEEE--EE------
Q 027382            9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA---------------------TIGVEFQTKTL--SI------   59 (224)
Q Consensus         9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~--~~------   59 (224)
                      +-+...+.-|+++|++||||||.+-+|...-.......                     -.+..+....-  +.      
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~   84 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD   84 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHH
Confidence            34566777899999999999999887754211100000                     00111111000  00      


Q ss_pred             -----CCeEEEEEEEeCCChhhhhhh----hHhH---hc-----CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCC
Q 027382           60 -----DHKTVKAQIWDTAGQERYRAV----TSAY---YR-----GAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNI  121 (224)
Q Consensus        60 -----~~~~~~~~l~D~~G~~~~~~~----~~~~---~~-----~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~  121 (224)
                           ....+.+.++||+|.......    ...+   ..     ..+-.++|+|++. .+.+..+...   +...    -
T Consensus        85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~---~~~~----~  157 (213)
T d1vmaa2          85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF---KEAV----N  157 (213)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH---HHHS----C
T ss_pred             HHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhh---cccc----C
Confidence                 001346899999993222111    1111   11     2467899999975 2333433333   3322    1


Q ss_pred             cEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382          122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus       122 p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      +--++.+|.|..    ...-.+-..+.+.++|+..++  +|+++++
T Consensus       158 ~~~lI~TKlDe~----~~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         158 VTGIILTKLDGT----AKGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CCEEEEECGGGC----SCTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CceEEEecccCC----CcccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            235678999964    234567788888889877776  4666644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.5e-07  Score=66.48  Aligned_cols=91  Identities=13%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             EEEEEEeCCChhhhhh----hh---HhHhc-----CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           64 VKAQIWDTAGQERYRA----VT---SAYYR-----GAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~----~~---~~~~~-----~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      +.+.++||+|......    ..   ....+     ..+-+++|.|++. .+....+...+..+       -+--++.+|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            4689999999432211    11   11222     2467899999875 34444444433322       1235678999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382          131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                      |..    ...-.+-..+.+.++|+..++  +|+++++
T Consensus       165 De~----~~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGT----AKGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTC----TTTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC----CCccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            964    234567788888899977776  4666643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.27  E-value=5.1e-07  Score=65.68  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             EEEEEEeCCChhhhh------hhhHhH--hcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382           64 VKAQIWDTAGQERYR------AVTSAY--YRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS  134 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~------~~~~~~--~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~  134 (224)
                      ..+.++||+|...+.      .....+  .-..+-+++|++++.. +....+...+   ...   ++ --++.||.|.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~---~~~---~~-~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN---QAS---KI-GTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH---HHC---TT-EEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh---ccc---Cc-ceEEEecccCC-
Confidence            478999999943221      111111  2245678999998763 3333333322   221   12 24668999964 


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382          135 LRAVPTEDAQEFAQRENLFFMETSALEATNVET  167 (224)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  167 (224)
                         ...-.+-....+.++|+..++  +|+++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               457788889999999987776  4666644

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=2.7e-06  Score=62.46  Aligned_cols=93  Identities=11%  Similarity=0.009  Sum_probs=49.7

Q ss_pred             EEEEEeCCChhhhhhhhHh--------HhcCCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382           65 KAQIWDTAGQERYRAVTSA--------YYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSL  135 (224)
Q Consensus        65 ~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~  135 (224)
                      ...++++.|......+...        ..-..++++.|+|+........... +...+.. .     =++++||+|+.++
T Consensus        91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-A-----D~ivlNK~Dl~~~  164 (222)
T d1nija1          91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-A-----DRILLTKTDVAGE  164 (222)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT-C-----SEEEEECTTTCSC
T ss_pred             ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh-C-----CcccccccccccH
Confidence            3467777774332222211        1123578899999987543222212 2222322 2     2788999998642


Q ss_pred             CCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHH
Q 027382          136 RAVPTEDAQEFAQREN--LFFMETSALEATNVETA  168 (224)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~  168 (224)
                          .+.+++..+..+  +++++++ .-...+..+
T Consensus       165 ----~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~l  194 (222)
T d1nija1         165 ----AEKLHERLARINARAPVYTVT-HGDIDLGLL  194 (222)
T ss_dssp             ----THHHHHHHHHHCSSSCEEECC-SSCCCGGGG
T ss_pred             ----HHHHHHHHHHHhCCCeEEEee-CCccCHHHh
Confidence                245666666654  5677654 323444444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=4.5e-07  Score=66.41  Aligned_cols=58  Identities=26%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccC----Ccc--eeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEFSVDSKA----TIG--VEFQTKTLSIDHKTVKAQIWDTAGQERY   77 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~   77 (224)
                      ..+++|++|||||||+|+|.+........-    ..|  +|.....+.+...   ..++||||-..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            468999999999999999987543221110    011  2222233344332   478999995433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=1.7e-06  Score=63.23  Aligned_cols=85  Identities=15%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             hHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEcC
Q 027382           83 AYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFMETSA  159 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~  159 (224)
                      ....+.|.+++|+++.+|+ +...+.+++......   +++.++|+||+|+.+..  ..+...++...+  ..+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEecc
Confidence            3457899999999988864 566677777666554   68999999999996421  122333344432  357899999


Q ss_pred             CCCCCHHHHHHHH
Q 027382          160 LEATNVETAFLTV  172 (224)
Q Consensus       160 ~~~~~v~~~~~~i  172 (224)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999998776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=2.4e-06  Score=64.74  Aligned_cols=95  Identities=8%  Similarity=0.041  Sum_probs=65.6

Q ss_pred             hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382           80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA  159 (224)
Q Consensus        80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (224)
                      .....++.+|+||+|+|+.+|.+...  ..+..+.+    +.|.++|+||+|+.+..  ..+...++....+..++.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~----~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK----NKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS----SSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc----CCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            34567899999999999988765432  11222222    57899999999996421  122233444555678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Q 027382          160 LEATNVETAFLTVLTEIYRIISK  182 (224)
Q Consensus       160 ~~~~~v~~~~~~i~~~i~~~~~~  182 (224)
                      .++.+..++...+.+.+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhhhh
Confidence            99999998888887766655443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.03  E-value=9e-06  Score=58.75  Aligned_cols=90  Identities=11%  Similarity=0.075  Sum_probs=54.3

Q ss_pred             EEEEEEeCCChhhhhh----hhHhH---h-----cCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382           64 VKAQIWDTAGQERYRA----VTSAY---Y-----RGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKC  130 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~----~~~~~---~-----~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~  130 (224)
                      ..+.++||+|......    .+..+   .     ...+-+++|+|++. .+....+...+..+.      + --++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~-~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------L-TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------C-SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------C-ceEEEecc
Confidence            5789999999432211    11111   1     24567899999875 445555555544442      2 24578999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382          131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE  166 (224)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  166 (224)
                      |...    ..-.+-.+..+.++|+..++.  |++.+
T Consensus       162 Det~----~~G~~l~~~~~~~~Pi~~i~~--Gq~p~  191 (207)
T d1okkd2         162 DGTA----KGGVLIPIVRTLKVPIKFVGV--GEGPD  191 (207)
T ss_dssp             TSSC----CCTTHHHHHHHHCCCEEEEEC--SSSTT
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEeC--CCChH
Confidence            9642    344577778888888766653  54443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=6.7e-07  Score=65.68  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .+++|++|||||||+|+|.+..
T Consensus       100 ~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEECCCCccHHHHHHhhccHh
Confidence            4689999999999999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=8e-06  Score=59.06  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             EEEEEEeCCChhhhhh----hhHhH--hcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382           64 VKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR  136 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~  136 (224)
                      ..+.++||+|......    .+..+  ....+-+++|.|++.. +..+.+...+..+    +   +--++.+|.|..   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~---  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGD---  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGC---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCcc---
Confidence            5789999999332211    11111  2366789999998764 3333333332222    1   124678999964   


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 027382          137 AVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                       ...-.+-.++...+.|+..++
T Consensus       163 -~~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         163 -ARGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SSCHHHHHHHHHHCCCEEEEC
T ss_pred             -ccchHHHHHHHHHCCCEEEEe
Confidence             235567788888888876664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=1.3e-06  Score=64.10  Aligned_cols=86  Identities=16%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             hHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEc
Q 027382           83 AYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ---EFAQRENLFFMETS  158 (224)
Q Consensus        83 ~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~s  158 (224)
                      ....+.|.+++|+++.+|+ +...+.+++......   +++.+||+||+||.+... ..+.+.   +.....+.+++.+|
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeee
Confidence            3457899999999998864 567777777666543   688999999999964221 122233   33445688999999


Q ss_pred             CCCCCCHHHHHHHH
Q 027382          159 ALEATNVETAFLTV  172 (224)
Q Consensus       159 ~~~~~~v~~~~~~i  172 (224)
                      ++++.|++++...+
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99998887765543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.59  E-value=1.6e-05  Score=55.40  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+..++|+|.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.5e-05  Score=56.69  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=41.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----ccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ   74 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   74 (224)
                      .+++.-|.|+|+.++|||+|+|.|++....-.     ...|.|+-...... .++....+.++||.|.
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGL   95 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCB
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccc
Confidence            44677899999999999999999998663211     12333443332222 2455667899999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.54  E-value=2e-05  Score=55.23  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +-..-+|+|.|++|||||||+++|...
T Consensus         4 ~~~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           4 PFFAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             GGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            345668999999999999999999763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.7e-05  Score=53.90  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            379999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.45  E-value=3e-05  Score=53.77  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..+|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.40  E-value=4.3e-05  Score=54.21  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999999874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.36  E-value=5.1e-05  Score=53.25  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.34  E-value=5.5e-05  Score=51.37  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |++.|++|||||||.++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=6.6e-05  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.28  E-value=7.1e-05  Score=53.15  Aligned_cols=25  Identities=16%  Similarity=0.482  Sum_probs=22.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+.++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999975

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.27  E-value=5.1e-05  Score=53.79  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+++|+|+|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.27  E-value=7.3e-05  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=3.5e-05  Score=54.33  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=7.7e-05  Score=51.61  Aligned_cols=20  Identities=20%  Similarity=0.448  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      +.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999975

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.24  E-value=9.2e-05  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+..|+|+|+|||||||+.++|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9e-05  Score=51.92  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.20  E-value=9.5e-05  Score=51.02  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|.|++||||||+.++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0001  Score=51.76  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999965

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++.|+|+|+|||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=50.21  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00017  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +|+|+|+.|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            38999999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.01  E-value=0.00024  Score=49.21  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=21.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...-+-|+++|.+||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557799999999999999888864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0002  Score=49.95  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=22.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+.+.-|+++|.+||||||+.+++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566789999999999999999964

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00084  Score=45.81  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ...-|++-|+-|+|||||++.+...-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            44568899999999999999987643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.95  E-value=0.00022  Score=49.70  Aligned_cols=20  Identities=25%  Similarity=0.240  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.00027  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCChHHHHHHHHhcccc
Confidence            78999999999999999987543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.00027  Score=50.44  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00024  Score=50.12  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++||||+||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.91  E-value=0.00028  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCcchhhHhccCCC
Confidence            7999999999999999887643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00031  Score=51.30  Aligned_cols=22  Identities=50%  Similarity=0.625  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            7999999999999999998744

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.00023  Score=49.14  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +|+++|.+||||||+-+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999888864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.90  E-value=0.00035  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            48999999999999999998744

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.90  E-value=0.00025  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            48999999999999999998644

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.89  E-value=0.00026  Score=48.72  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.88  E-value=0.00028  Score=49.70  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=22.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +...++-|+|-|++|||||||.++|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344567799999999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00028  Score=49.47  Aligned_cols=21  Identities=48%  Similarity=0.600  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00028  Score=52.25  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            48999999999999999998744

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00032  Score=48.27  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++|+|.+||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999998753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.83  E-value=0.00033  Score=48.37  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00033  Score=52.75  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .++|+|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            38999999999999999998744

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.00043  Score=50.73  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            57899999999999999998553

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.79  E-value=0.00032  Score=52.08  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+.+.-|++.|+||+|||||.+++.+.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            334556999999999999999999764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.79  E-value=0.00043  Score=50.70  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            79999999999999999987543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00038  Score=49.30  Aligned_cols=21  Identities=14%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999976

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00039  Score=49.16  Aligned_cols=20  Identities=50%  Similarity=0.687  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.75  E-value=0.00071  Score=51.96  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -+|+|.|++|||||||+++|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00035  Score=51.26  Aligned_cols=22  Identities=36%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            7999999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.71  E-value=0.00052  Score=50.31  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          32 MILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHhcCCC
Confidence            79999999999999999987543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.70  E-value=0.00046  Score=47.52  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.70  E-value=0.00033  Score=51.01  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCcC
Confidence            79999999999999999998553

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00046  Score=49.51  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |+|+|++|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.67  E-value=0.00026  Score=50.19  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      --|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999965

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00035  Score=51.07  Aligned_cols=21  Identities=48%  Similarity=0.670  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ++++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            799999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.63  E-value=0.00059  Score=50.11  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|+|||||++.+.+-..
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            79999999999999999997543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.63  E-value=0.00031  Score=52.08  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +++|+|+.|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            48999999999999999887643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00062  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|+|||||++.+.+-..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            68999999999999999998653

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.62  E-value=0.00058  Score=47.21  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00063  Score=48.78  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++-|+|.|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0007  Score=47.92  Aligned_cols=22  Identities=36%  Similarity=0.681  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++++|++|+|||++++.|...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            6899999999999999988763

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.58  E-value=0.018  Score=42.40  Aligned_cols=88  Identities=11%  Similarity=0.022  Sum_probs=54.0

Q ss_pred             EEEEEEeCCChhhh-hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCc-EEEEEeCCCCCCCCCCCH
Q 027382           64 VKAQIWDTAGQERY-RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIV-IMLIGNKCDLGSLRAVPT  140 (224)
Q Consensus        64 ~~~~l~D~~G~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ilv~nK~D~~~~~~~~~  140 (224)
                      +.+.++|+|+.-.. ..........+|.++++.+. +..++..+...+..+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            56899999874322 22223334568888888766 55777766666555554332 2233 346789887643    34


Q ss_pred             HHHHHHHHHcCCeEEE
Q 027382          141 EDAQEFAQRENLFFME  156 (224)
Q Consensus       141 ~~~~~~~~~~~~~~~~  156 (224)
                      +..+++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5677788888876554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.54  E-value=0.00063  Score=50.51  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|||||||++.+.+-.
T Consensus        31 ~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHcCc
Confidence            7999999999999999998754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00038  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...|+++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.48  E-value=0.00069  Score=47.25  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=17.4

Q ss_pred             EEE-EEcCCCCCHHHHHHHHhc
Q 027382           17 KVV-LIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~-v~G~~~~GKSsli~~l~~   37 (224)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999998853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.00072  Score=49.37  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..-.+++.|+||+||||+++.+..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344689999999999999999975

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00086  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      =+++++|++|||||++++.|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            37899999999999999988754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.45  E-value=0.0009  Score=49.55  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ++++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6999999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.44  E-value=0.00078  Score=47.55  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=23.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +...++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3446678999999999999999999753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.44  E-value=0.00045  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      ++++|+.|||||||++.+.+-..
T Consensus        34 ~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          34 FGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHcCcC
Confidence            89999999999999999998543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.00082  Score=48.97  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|+||+||||+.+.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999998753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.37  E-value=0.00095  Score=48.01  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .++|+|-|++||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.33  E-value=0.0012  Score=48.63  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +...|++.|++|+|||+|++.+..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            456799999999999999999975

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0015  Score=45.82  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=22.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .++-|+|.|.+||||||+.+.|....+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g~   28 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWGY   28 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            467899999999999999998865443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.11  E-value=0.0015  Score=48.34  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456699999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.08  E-value=0.0017  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.08  E-value=0.0015  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..-.++++||||||||.|.+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345689999999999999999975

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0019  Score=49.00  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=22.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....++-|+|.|++|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345678899999999999999887754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0016  Score=47.75  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      -.+++.|++|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.02  E-value=0.002  Score=47.39  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ...-.++|.|++|+|||++++.+...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            33457999999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.96  E-value=0.0018  Score=47.72  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            367899999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0021  Score=47.32  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.|++.|++|+|||+|++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999999985

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0016  Score=47.67  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=21.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +..-.+++.|++|+||||++..+...
T Consensus        31 ~~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          31 RDLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             TCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence            33346899999999999999988763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.86  E-value=0.0025  Score=45.14  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0025  Score=45.52  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467789999999999998875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.78  E-value=0.0027  Score=45.36  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556699999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0029  Score=45.76  Aligned_cols=22  Identities=14%  Similarity=0.448  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999998753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.003  Score=46.74  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +-.|++.|+||+|||+|++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346899999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0042  Score=46.52  Aligned_cols=26  Identities=15%  Similarity=0.098  Sum_probs=21.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHh
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~   36 (224)
                      ....++=|+|.|.+|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            45568889999999999999987663

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.003  Score=45.41  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0031  Score=46.61  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.+++.|+||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34589999999999999999975

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0036  Score=45.03  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999763

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0037  Score=49.91  Aligned_cols=21  Identities=33%  Similarity=0.787  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ||+++||+|||||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0028  Score=49.68  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      =+++++|++|||||++++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3569999999999999976654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0046  Score=43.96  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0042  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      .-.|++.|++|+|||+|++++....
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4469999999999999999997643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0078  Score=42.77  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      +-|+|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4588999999999999998865544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.012  Score=41.34  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      +.|.|++|+|||+|...+..+..
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999986543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.07  E-value=0.0099  Score=42.07  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +-|+|.|..||||||+.+.|....
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G   26 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLG   26 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
Confidence            568999999999999999886433

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.04  E-value=0.0092  Score=45.68  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .+++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5789999999999999999999764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.96  E-value=0.0088  Score=41.35  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -|++.|++|+||||+.-.|..+..
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999987654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0047  Score=44.62  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0074  Score=42.99  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.80  E-value=0.01  Score=41.08  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -|++.|++|+||||+.-.|..+..
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999987554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.012  Score=44.77  Aligned_cols=26  Identities=19%  Similarity=0.370  Sum_probs=21.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ....-.++++|++|||||.|.+.|..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            33344689999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.70  E-value=0.011  Score=45.21  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..++|.|=|..|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999999964

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.024  Score=40.62  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -+.|.|++|+|||+|...+.....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~~   59 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTCQ   59 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            368999999999999999876543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0085  Score=43.33  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      --|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999999753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.59  E-value=0.0094  Score=44.37  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ..-|.|.|..|+|||||...+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.53  E-value=0.0086  Score=45.79  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382           14 YVFKVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        14 ~~i~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      ..++|.|=|..|+||||+++.|...-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999997643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.50  E-value=0.0099  Score=46.09  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      --+++.|+||+|||+|.+.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.44  E-value=0.011  Score=42.23  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +++.|++|+|||.|++++.+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999997643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.43  E-value=0.0049  Score=47.16  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.38  E-value=0.011  Score=42.78  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -++|.|++|+|||+|.-.++....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            368999999999999998876543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.0021  Score=45.02  Aligned_cols=18  Identities=39%  Similarity=0.608  Sum_probs=16.3

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 027382           19 VLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        19 ~v~G~~~~GKSsli~~l~   36 (224)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999985

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.26  E-value=0.015  Score=39.88  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           16 FKVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999887654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.24  E-value=0.0049  Score=46.14  Aligned_cols=20  Identities=25%  Similarity=0.484  Sum_probs=15.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |+|.|.+|||||||.++|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.10  E-value=0.019  Score=45.12  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC---eEEEEEEEeCCChhhhhhhhHhHhc-CCCEEEE
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH---KTVKAQIWDTAGQERYRAVTSAYYR-GAVGAML   93 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~vi~   93 (224)
                      |+|.|+.||||||++..++.......      .++.+..-.++.   ....+.+-...| ..|.......++ +.| +|+
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~~~~~------~~i~tiEdPiE~~~~~~~q~~v~~~~~-~~~~~~l~~~lR~dPD-vi~  232 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQELNSSE------RNILTVEDPIEFDIDGIGQTQVNPRVD-MTFARGLRAILRQDPD-VVM  232 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHCCTT------SCEEEEESSCCSCCSSSEEEECBGGGT-BCHHHHHHHHGGGCCS-EEE
T ss_pred             EEEEcCCCCCccHHHHHHhhhhcCCC------ceEEEeccCcccccCCCCeeeecCCcC-CCHHHHHHHHHhhcCC-EEE
Confidence            89999999999999999987432111      111111111111   111222221112 234444444443 566 677


Q ss_pred             EEeCCChhhHHHHH
Q 027382           94 VYDMTKRQSFDHMA  107 (224)
Q Consensus        94 v~d~~~~~s~~~~~  107 (224)
                      +-.+.|+++...+.
T Consensus       233 igEiRd~~ta~~a~  246 (401)
T d1p9ra_         233 VGEIRDLETAQIAV  246 (401)
T ss_dssp             ESCCCSHHHHHHHH
T ss_pred             ecCcCChHHHHHHH
Confidence            77888877766554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.07  E-value=0.015  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382           15 VFKVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      ---++|.|+||+|||+|+.++..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            334789999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.93  E-value=0.015  Score=41.40  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.89  E-value=0.016  Score=44.96  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...-+++++|++|||||-|.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3556799999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.87  E-value=0.017  Score=43.81  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +++.|+||+|||.|.+.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.79  E-value=0.0098  Score=44.61  Aligned_cols=19  Identities=21%  Similarity=0.543  Sum_probs=16.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 027382           16 FKVVLIGDSAVGKSQLLARF   35 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l   35 (224)
                      ++ +++|+.||||||+++++
T Consensus        26 ln-vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VT-AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EE-EEECCTTTCSTHHHHHH
T ss_pred             eE-EEECCCCCcHHHHHHHH
Confidence            44 78999999999999988

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.76  E-value=0.018  Score=41.39  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNEF   40 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (224)
                      -++|.|++|+|||+|...+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999976543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.023  Score=40.94  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      -++|.|++|+|||+|...++...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.024  Score=40.13  Aligned_cols=20  Identities=15%  Similarity=0.380  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=0.022  Score=44.41  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=17.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 027382           15 VFKVVLIGDSAVGKSQLLARFA   36 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~   36 (224)
                      .++ +|+|+.|+|||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            355 588999999999999973

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.09  E-value=0.028  Score=41.41  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999888864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.09  E-value=0.23  Score=34.95  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCCCHH
Q 027382           63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTE  141 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~  141 (224)
                      .+.+.++|+|+...  ......+..+|.++++...+ ..++..+.+.+..+.+.   ++|++ +|.|+.+..+ ......
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHH
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhH
Confidence            36789999988543  23445567899999998774 56777777777666653   56654 7899998754 334444


Q ss_pred             HHHHH
Q 027382          142 DAQEF  146 (224)
Q Consensus       142 ~~~~~  146 (224)
                      ..+++
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44444

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.027  Score=40.68  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      +++.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68899999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.85  E-value=0.03  Score=39.80  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -+.|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999877654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.63  E-value=0.027  Score=39.61  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           13 DYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        13 ~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      +..--+++.|++++|||.|+..|+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3444588999999999999998865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.53  E-value=0.037  Score=39.83  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027382           17 KVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.42  E-value=0.025  Score=42.04  Aligned_cols=17  Identities=12%  Similarity=0.458  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 027382           18 VVLIGDSAVGKSQL-LAR   34 (224)
Q Consensus        18 i~v~G~~~~GKSsl-i~~   34 (224)
                      ++|+|.+|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68899999999976 444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.23  E-value=0.05  Score=41.10  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=19.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 027382           15 VFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        15 ~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-.++++|++|+|||.+.+.|..
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHH
Confidence            33578889999999999988754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.039  Score=43.34  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      -.++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3589999999999999887764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.05  E-value=0.033  Score=41.78  Aligned_cols=15  Identities=20%  Similarity=0.638  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 027382           18 VVLIGDSAVGKSQLL   32 (224)
Q Consensus        18 i~v~G~~~~GKSsli   32 (224)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.046  Score=40.02  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999987754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.059  Score=40.09  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            6899999999999999888753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.22  E-value=0.061  Score=39.60  Aligned_cols=27  Identities=22%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           11 KIDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        11 ~~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ..+..--+++.|++++|||+|++.+..
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            334455678899999999999999875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.38  E-value=0.12  Score=32.93  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382           12 IDYVFKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        12 ~~~~i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      ...-+-|++-|..|+|||++.++|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            45668899999999999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.092  Score=40.36  Aligned_cols=18  Identities=28%  Similarity=0.554  Sum_probs=15.2

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 027382           18 VVLIGDSAVGKSQLLARF   35 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l   35 (224)
                      .+|.|++|+|||+++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            688999999999987543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.52  E-value=0.43  Score=32.45  Aligned_cols=103  Identities=15%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             ccceeEEEEEEcC-CCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh------------
Q 027382           11 KIDYVFKVVLIGD-SAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY------------   77 (224)
Q Consensus        11 ~~~~~i~i~v~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------   77 (224)
                      ...+++||.|+|. .++|-+ |+..|..+.....                 ...+.++++|.+.....            
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a   81 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSL   81 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTT
T ss_pred             ccCCCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccc
Confidence            3457899999996 667755 4555554432111                 13345666776652211            


Q ss_pred             ---------hhhhHhHhcCCCEEEEEEeCCChh--hH-HH-------HHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382           78 ---------RAVTSAYYRGAVGAMLVYDMTKRQ--SF-DH-------MARWLDELRGHADKNIVIMLIGNKCD  131 (224)
Q Consensus        78 ---------~~~~~~~~~~~d~vi~v~d~~~~~--s~-~~-------~~~~~~~~~~~~~~~~p~ilv~nK~D  131 (224)
                               .......+.++|++|++-......  +. +.       ++++...+.++.+++.-++++.|-.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          82 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             CTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                     111234467899888876554311  21 11       22344555555555666777766655

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.08  E-value=0.12  Score=35.45  Aligned_cols=30  Identities=23%  Similarity=0.237  Sum_probs=23.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNEFSVDSKAT   47 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~   47 (224)
                      ++|+|...||||.+..++........|..|
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence            689999999999999999865444444444

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.71  E-value=0.15  Score=37.62  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.15  Score=37.36  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027382           18 VVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      +.+.|++++|||+|+-.+....
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5799999999999988876543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.11  E-value=0.19  Score=36.33  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 027382           16 FKVVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        16 i~i~v~G~~~~GKSsli~~l~~   37 (224)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3479999999999999998854

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.36  E-value=0.31  Score=31.80  Aligned_cols=17  Identities=29%  Similarity=0.561  Sum_probs=13.7

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 027382           19 VLIGDSAVGKSQ-LLARF   35 (224)
Q Consensus        19 ~v~G~~~~GKSs-li~~l   35 (224)
                      +++|+-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 55554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.00  E-value=0.35  Score=33.47  Aligned_cols=64  Identities=8%  Similarity=0.017  Sum_probs=33.8

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMET  157 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (224)
                      +.+++|.+.... ...........+.+..  ....-+|.|+.|...  ....+.++.+.+..+++++.+
T Consensus       139 ~~v~~V~~~~~~-~~~~~~~~~~~~~~~~--~~~~gvv~N~~~~~~--~~~~~~~~~l~~~~gi~vlG~  202 (224)
T d1byia_         139 LPVILVVGVKLG-CINHAMLTAQVIQHAG--LTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLGE  202 (224)
T ss_dssp             CCEEEEEECSTT-HHHHHHHHHHHHHHTT--CCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEEE
T ss_pred             ceeeEEEeeccc-hhHHHHHHHHHHhccC--CccEEEEEeCcCCCc--hHHHHHHHHHHHHhCCCEEEE
Confidence            445666666553 2333333334444332  244577788887542  233444566666778876543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.85  E-value=0.35  Score=34.57  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            58999999999999998644

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.73  E-value=0.25  Score=36.49  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027382           17 KVVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (224)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            5899999999999998877654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.69  E-value=0.74  Score=30.36  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=17.4

Q ss_pred             eeEEEEEEcC-CCCCHHHHHHHHhcC
Q 027382           14 YVFKVVLIGD-SAVGKSQLLARFARN   38 (224)
Q Consensus        14 ~~i~i~v~G~-~~~GKSsli~~l~~~   38 (224)
                      .++||.|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            5789999995 788887555 44443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.32  E-value=0.38  Score=35.12  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=25.1

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCC
Q 027382           89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCD  131 (224)
Q Consensus        89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D  131 (224)
                      ..+++|..+ ++.+..++.+.+..+...   ++|+ -+|+|+.-
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            356666655 456777777777777664   3443 56678864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.01  E-value=0.39  Score=34.06  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999997644

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.68  E-value=3.6  Score=29.65  Aligned_cols=89  Identities=11%  Similarity=0.029  Sum_probs=50.0

Q ss_pred             EEEEEEEeCCChhhhhhhhH-hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcE-EEEEeCCCCCCCCCCC
Q 027382           63 TVKAQIWDTAGQERYRAVTS-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVI-MLIGNKCDLGSLRAVP  139 (224)
Q Consensus        63 ~~~~~l~D~~G~~~~~~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~D~~~~~~~~  139 (224)
                      .+.+.++|+|+......... .....+|.++++... +..++..+...+..+.... ..+.++ .+|.|+.+..    ..
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~----~~  192 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE  192 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch----hh
Confidence            36788999987543222222 223457777766544 4456655555555444322 223443 4778887743    22


Q ss_pred             HHHHHHHHHHcCCeEEE
Q 027382          140 TEDAQEFAQRENLFFME  156 (224)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (224)
                      .+..+++.+..+.+++.
T Consensus       193 ~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         193 DELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcCCeEEE
Confidence            34566777777776554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.64  E-value=0.28  Score=36.64  Aligned_cols=14  Identities=43%  Similarity=0.593  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 027382           19 VLIGDSAVGKSQLL   32 (224)
Q Consensus        19 ~v~G~~~~GKSsli   32 (224)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999976

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.53  E-value=3  Score=27.76  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=38.9

Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382           97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS  158 (224)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (224)
                      .+|+.+++...+....+..  ....|+|+++......    -..+++.+|+.+.+++++.+.
T Consensus         2 ~sd~~~l~~~v~~~~~~l~--~AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIA--NRDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHT--TCSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEG
T ss_pred             CCChHHHHHHHHHHHHHHH--cCCCEEEEECcCcccc----chHHHHHHHHHhhceeEEecc
Confidence            3566666665553333222  2369999999888753    357889999999999987664

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.14  E-value=3.4  Score=28.41  Aligned_cols=84  Identities=10%  Similarity=-0.063  Sum_probs=49.8

Q ss_pred             EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027382           64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDA  143 (224)
Q Consensus        64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  143 (224)
                      +.+.++|+|+.-..  .....+..+|.+++|.... ..++....+.+..+.+...  .++-+|.|+.+...    .....
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~~--~~~~iv~N~~~~~~----~~~~~  180 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLGT--KVLGVVVNRITTLG----IEMAK  180 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHTC--EEEEEEEEEECTTT----HHHHH
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhccc--cccccccccccccc----ccchh
Confidence            55789999885433  3344566799999998774 4566666655555544421  23457889986421    12233


Q ss_pred             HHHHHHcCCeEEE
Q 027382          144 QEFAQRENLFFME  156 (224)
Q Consensus       144 ~~~~~~~~~~~~~  156 (224)
                      +++.+..+.+++.
T Consensus       181 ~~i~~~~~~~~~~  193 (232)
T d1hyqa_         181 NEIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHHTTSCEEE
T ss_pred             hhHHhhcCCeEEE
Confidence            4455556665443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=82.03  E-value=0.43  Score=34.87  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027382           18 VVLIGDSAVGKSQLLARFARN   38 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (224)
                      +.+.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            578999999999999888754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=0.45  Score=34.49  Aligned_cols=18  Identities=33%  Similarity=0.709  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 027382           18 VVLIGDSAVGKSQLLARF   35 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l   35 (224)
                      |++-|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            355699999999985444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.55  E-value=3  Score=27.19  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             eeEEEEEEcC-CCCCHHHHHHHHhcCC
Q 027382           14 YVFKVVLIGD-SAVGKSQLLARFARNE   39 (224)
Q Consensus        14 ~~i~i~v~G~-~~~GKSsli~~l~~~~   39 (224)
                      +++||.|+|. .++|- ++...|..+.
T Consensus         3 ~p~KV~IiGA~G~VG~-~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGY-SLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHH-HHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHH-HHHHHHHhcc
Confidence            5789999996 78995 4555555444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.52  E-value=0.47  Score=34.70  Aligned_cols=19  Identities=21%  Similarity=0.462  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027382           17 KVVLIGDSAVGKSQLLARF   35 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l   35 (224)
                      +|++-|..|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4677899999999986655

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.42  E-value=0.49  Score=34.57  Aligned_cols=20  Identities=15%  Similarity=0.302  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.39  E-value=0.31  Score=36.51  Aligned_cols=16  Identities=38%  Similarity=0.534  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHH
Q 027382           18 VVLIGDSAVGKSQLLA   33 (224)
Q Consensus        18 i~v~G~~~~GKSsli~   33 (224)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            3899999999999753

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.24  E-value=0.36  Score=35.46  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027382           17 KVVLIGDSAVGKSQLLARFARNE   39 (224)
Q Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (224)
                      |++++|.+|+|||+|+..+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            57899999999999998765443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.22  E-value=0.32  Score=31.16  Aligned_cols=20  Identities=20%  Similarity=0.119  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027382           18 VVLIGDSAVGKSQLLARFAR   37 (224)
Q Consensus        18 i~v~G~~~~GKSsli~~l~~   37 (224)
                      .+|.++.|+|||.++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47799999999998865543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.91  E-value=0.35  Score=36.20  Aligned_cols=14  Identities=43%  Similarity=0.593  Sum_probs=13.2

Q ss_pred             EEEcCCCCCHHHHH
Q 027382           19 VLIGDSAVGKSQLL   32 (224)
Q Consensus        19 ~v~G~~~~GKSsli   32 (224)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999997