Citrus Sinensis ID: 027409
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 223 | ||||||
| 255541292 | 223 | conserved hypothetical protein [Ricinus | 0.982 | 0.982 | 0.662 | 3e-79 | |
| 224063798 | 216 | predicted protein [Populus trichocarpa] | 0.964 | 0.995 | 0.659 | 2e-77 | |
| 225453945 | 216 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 1.0 | 0.651 | 4e-76 | |
| 224127378 | 216 | predicted protein [Populus trichocarpa] | 0.968 | 1.0 | 0.669 | 2e-74 | |
| 224160951 | 216 | predicted protein [Populus trichocarpa] | 0.968 | 1.0 | 0.669 | 3e-74 | |
| 15225459 | 215 | uncharacterized protein [Arabidopsis tha | 0.959 | 0.995 | 0.65 | 7e-70 | |
| 356496376 | 223 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.973 | 0.635 | 5e-69 | |
| 255537091 | 215 | conserved hypothetical protein [Ricinus | 0.955 | 0.990 | 0.638 | 2e-68 | |
| 297824587 | 221 | hypothetical protein ARALYDRAFT_483673 [ | 0.973 | 0.981 | 0.627 | 1e-67 | |
| 449526126 | 217 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.964 | 0.990 | 0.619 | 1e-67 |
| >gi|255541292|ref|XP_002511710.1| conserved hypothetical protein [Ricinus communis] gi|223548890|gb|EEF50379.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/225 (66%), Positives = 177/225 (78%), Gaps = 6/225 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSPD A K+YI TVKSC+N+KESGV ELLSAMAAGWNAK+IVE+W++G PI TSIG
Sbjct: 1 MKLVWSPDTALKSYIYTVKSCKNLKESGVPELLSAMAAGWNAKMIVESWSYGNPIATSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSE---VIVRQAEEVMGELKGVDFL 117
LA+AA HTC RHVC+VPDERSR Y+KA+ G E +IV +AEE + L GVDF+
Sbjct: 61 LAVAATHTCGRHVCLVPDERSRAEYLKAIRSSAGMAIETEVIIVGEAEEAVAGLVGVDFM 120
Query: 118 VVDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPV 177
VVDC ++F RVLRFA+ SNKGAVL KNA+Q +G RW GVL+RGTRVVRSVFLPV
Sbjct: 121 VVDCKRREFIRVLRFAKLSNKGAVLVRKNAYQSCFTGFRW--HGVLERGTRVVRSVFLPV 178
Query: 178 GQGLDIVHVGSTSGSGSG-ESMNKNHSRWIKHVDQKSGEEHFFRG 221
G GLDI H+GST+ + +G S+ ++ SRWIK VDQKSGEEH FRG
Sbjct: 179 GNGLDIAHIGSTTTTIAGAASLKRSSSRWIKCVDQKSGEEHVFRG 223
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063798|ref|XP_002301283.1| predicted protein [Populus trichocarpa] gi|222843009|gb|EEE80556.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 172/220 (78%), Gaps = 5/220 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVW+PD A KAY+ TVK+CE+ KES VAELLSAMAAGWNAKLIVE+W+ GPI TSIG
Sbjct: 1 MKLVWTPDTALKAYVCTVKTCEDFKESSVAELLSAMAAGWNAKLIVESWSKAGPIATSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LA+AA+HTC RHVC+VPDE SR YVKAM+ +EV+V +AEEVM L GVDFLV D
Sbjct: 61 LAVAAKHTCGRHVCVVPDEGSRSEYVKAMHGAGMRETEVLVGEAEEVMAGLVGVDFLVAD 120
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQG 180
C +DF RVLRFA+ S+KGAVLA KNAFQ+S SG +W GVL+RGTRVV++ +LPVGQG
Sbjct: 121 CRRRDFVRVLRFAKLSHKGAVLACKNAFQQSVSGFKW--HGVLERGTRVVKTAYLPVGQG 178
Query: 181 LDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
LD+ H+GS G + SRWIKH+D+KSGEEH FR
Sbjct: 179 LDMAHIGSNGGD---KRSRGGPSRWIKHIDRKSGEEHVFR 215
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453945|ref|XP_002273878.1| PREDICTED: uncharacterized protein LOC100245353 [Vitis vinifera] gi|296089168|emb|CBI38871.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/221 (65%), Positives = 169/221 (76%), Gaps = 5/221 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ ASKAYIDTVKS E K+SGVAEL++AMA GWNAK+IVE W+HGG +TTS G
Sbjct: 1 MKLVWSPEIASKAYIDTVKSSEVFKQSGVAELIAAMAGGWNAKMIVETWSHGGVVTTSAG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LAIAA HTC RHVCIVPDERS+LAY+KAM+D EVIV +AE+ L VDFLVVD
Sbjct: 61 LAIAASHTCGRHVCIVPDERSKLAYIKAMHDAGVTSPEVIVGEAEDAAATLLEVDFLVVD 120
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQG 180
C +DF +VL FA+ S +GAVL KN QRS SG +W GVL RGTRVVR+V+LPVG+G
Sbjct: 121 CRRRDFGKVLMFAKISQRGAVLVRKNVNQRSVSGFKW--HGVLHRGTRVVRTVYLPVGKG 178
Query: 181 LDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFRG 221
LDI H+GS+ G S K SRWI+H+D+KSGEEH RG
Sbjct: 179 LDIAHIGSSGGVASS---RKGPSRWIRHIDEKSGEEHLIRG 216
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127378|ref|XP_002320059.1| predicted protein [Populus trichocarpa] gi|222860832|gb|EEE98374.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 171/221 (77%), Gaps = 5/221 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVW+PD A KAY+ T+K+CEN ES VAELLSAMAAGWNAKLIVE+W+ GGPI TSIG
Sbjct: 1 MKLVWTPDTALKAYVCTIKTCENFIESSVAELLSAMAAGWNAKLIVESWSKGGPIATSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LA+AA HTC RHVC+VPDE SR YVK M+ +EV+V + EEVM L GVDFLVVD
Sbjct: 61 LAVAAHHTCGRHVCVVPDEGSRSEYVKTMHVAGMLETEVLVGEVEEVMAGLVGVDFLVVD 120
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQG 180
C +DF R LR A+ S KGAVLA KNAFQ+S +G RW G L RGTRVV++VFLPVGQG
Sbjct: 121 CKRRDFLRFLRLAKLSPKGAVLACKNAFQKSAAGFRW--HGALARGTRVVKTVFLPVGQG 178
Query: 181 LDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFRG 221
LD+ H+GS SGS ES + SRWI+H+DQKSGEEH FRG
Sbjct: 179 LDMAHIGSHSGS---ESSKRGPSRWIRHIDQKSGEEHVFRG 216
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224160951|ref|XP_002338274.1| predicted protein [Populus trichocarpa] gi|222871592|gb|EEF08723.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 171/221 (77%), Gaps = 5/221 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVW+PD A KAY+ TVK+CE+ KES VAELLSAMAAGWNAKLIVE+W+ GPI TSIG
Sbjct: 1 MKLVWTPDTALKAYVCTVKTCEDFKESSVAELLSAMAAGWNAKLIVESWSKAGPIATSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LA+AA HTC RHVC+VPDE SR YVK M+ +EV+V + EEVM L GVDFLVVD
Sbjct: 61 LAVAAHHTCGRHVCVVPDEGSRSEYVKTMHVAGMLETEVLVGEVEEVMAGLVGVDFLVVD 120
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQG 180
C +DF R LR A+ S KGAVLA KNAFQ+S +G RW G L RGTRVV++VFLPVGQG
Sbjct: 121 CKRRDFLRFLRLAKLSPKGAVLACKNAFQKSAAGFRW--HGALARGTRVVKTVFLPVGQG 178
Query: 181 LDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFRG 221
LD+ H+GS SGS ES + SRWI+H+DQKSGEEH FRG
Sbjct: 179 LDMAHIGSHSGS---ESSKRGPSRWIRHIDQKSGEEHVFRG 216
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225459|ref|NP_182061.1| uncharacterized protein [Arabidopsis thaliana] gi|2583118|gb|AAB82627.1| hypothetical protein [Arabidopsis thaliana] gi|26451827|dbj|BAC43006.1| unknown protein [Arabidopsis thaliana] gi|28950747|gb|AAO63297.1| At2g45360 [Arabidopsis thaliana] gi|330255449|gb|AEC10543.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 143/220 (65%), Positives = 161/220 (73%), Gaps = 6/220 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ AS AYIDTVKSC++ KESGVAE LSA AAGWNA+LIVE W+ G PITTS+G
Sbjct: 1 MKLVWSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIVETWSRGDPITTSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LA+AA HT RHVCIVPDE+S+L YV AM V V+ E M E GVDFLVVD
Sbjct: 61 LAVAATHTGGRHVCIVPDEQSKLEYVLAMRGFVTTEVVVVGESVENTMEEFPGVDFLVVD 120
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQG 180
++F R LRFA+ SNKGAVL KNA R+ SG +W VL RGTRVVRSVFLPVG G
Sbjct: 121 SKRREFVRTLRFAKLSNKGAVLVCKNAMHRAISGFKW--HDVLKRGTRVVRSVFLPVGSG 178
Query: 181 LDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
LDIVHVG+T G G+S N SRWI+HVD SGEEH FR
Sbjct: 179 LDIVHVGAT---GRGDSRNLR-SRWIRHVDHLSGEEHLFR 214
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496376|ref|XP_003517044.1| PREDICTED: uncharacterized protein LOC100791746 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/222 (63%), Positives = 173/222 (77%), Gaps = 5/222 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP++A +AYIDTVKSCE KE+GV ELLSAMAAGWN K IVE+W++GGPI S+G
Sbjct: 1 MKLVWSPESALQAYIDTVKSCEKFKETGVPELLSAMAAGWNTKFIVESWSYGGPIAASVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWVSEVIVRQAEEVMGELKGVDFLVV 119
LA+AAR+T ARHVCIVPDERSR Y+KA+ ++ V EV+V +AE + +L G+DFLVV
Sbjct: 61 LAVAARNTGARHVCIVPDERSRAQYIKALAEMGVSPPPEVVVGEAEVAVSQLAGLDFLVV 120
Query: 120 DCTSKDFARVLRFARFSNKGAVLAFKNAFQRS-TSGLRWQGQGVLDRGTRVVRSVFLPVG 178
DC K+FARVLR A+ KGAVLA KNA+QR+ G RW VL +G RVVRSVFLPVG
Sbjct: 121 DCKRKEFARVLRVAKVGPKGAVLACKNAWQRNFCGGFRW--SVVLQKGVRVVRSVFLPVG 178
Query: 179 QGLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
+GLDI ++GS S SG+ + +K RWIKH+DQ+SGEEH FR
Sbjct: 179 KGLDIAYIGS-SRSGAAATASKGPRRWIKHIDQQSGEEHLFR 219
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537091|ref|XP_002509612.1| conserved hypothetical protein [Ricinus communis] gi|223549511|gb|EEF50999.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/221 (63%), Positives = 164/221 (74%), Gaps = 8/221 (3%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ A KAYI+TVKSCE +ES VAELLSAMAAGW A LIVE W+HGG I TSIG
Sbjct: 1 MKLVWSPEPALKAYIETVKSCEIFQESSVAELLSAMAAGWKANLIVETWSHGGVIATSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120
LAIA+RH RHVCIVPDERSR Y K M + G + E+IV + EEV L G+DFLVVD
Sbjct: 61 LAIASRHAGGRHVCIVPDERSRTDYAKVMGE-AGMLPEIIVGEPEEVTERLDGIDFLVVD 119
Query: 121 CTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGT-RVVRSVFLPVGQ 179
KDFARVLR A+ S++GAVL KNA + TS RW +GVL+ G+ R+VRSVFLPVG+
Sbjct: 120 SRQKDFARVLRLAKLSSRGAVLMCKNANSK-TSSFRW--RGVLEEGSCRLVRSVFLPVGK 176
Query: 180 GLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
GLDI HV + SG SG NK RWIKH+D++SGEEH R
Sbjct: 177 GLDIAHV-AVSGGNSGP--NKTEKRWIKHIDKQSGEEHVIR 214
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824587|ref|XP_002880176.1| hypothetical protein ARALYDRAFT_483673 [Arabidopsis lyrata subsp. lyrata] gi|297326015|gb|EFH56435.1| hypothetical protein ARALYDRAFT_483673 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/223 (62%), Positives = 159/223 (71%), Gaps = 6/223 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ AS AYIDTVKSC++ KESGVAE LSA AAGWNA+LIVE W+ G I TS+G
Sbjct: 1 MKLVWSPETASDAYIDTVKSCKSYKESGVAEFLSATAAGWNARLIVETWSRGDTIATSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSE---VIVRQAEEVMGELKGVDFL 117
L +AA HTC RHVCIV DE+S+L YV AM VV + V+ E M E GVDFL
Sbjct: 61 LVVAATHTCGRHVCIVADEQSKLEYVLAMRGVVTMETTEVVVVGESVENTMEEFPGVDFL 120
Query: 118 VVDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPV 177
VVD +DF + LRFA+ SNKGAVL KNA QR+ SG +W VL GTRVVRSVFLPV
Sbjct: 121 VVDSKRRDFVKTLRFAKLSNKGAVLVCKNATQRAISGFKW--HDVLKGGTRVVRSVFLPV 178
Query: 178 GQGLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
G GLDIVHVG+T G G+S SRWI+HVD SGEEH FR
Sbjct: 179 GSGLDIVHVGATGGHQRGDS-RMLPSRWIRHVDHLSGEEHLFR 220
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526126|ref|XP_004170065.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214121 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/221 (61%), Positives = 161/221 (72%), Gaps = 6/221 (2%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSPD ASKAYIDT+KSCE E GVAELLSAMAAGWNAKLI E W+ GGP+ TS+G
Sbjct: 1 MKLVWSPDRASKAYIDTIKSCEIYGEFGVAELLSAMAAGWNAKLIFETWSDGGPVATSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWVSEVIVRQAEEVMGELKGVDFLVV 119
L+IAA H+ RH+CIV DERSR YV+ + V + EV++ AE V E +GVDFLV
Sbjct: 61 LSIAAGHSGGRHLCIVADERSRSKYVEEIRKAGVTSLPEVVIGDAEAVAAETEGVDFLVA 120
Query: 120 DCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQ 179
D KDFARVLR R S +GAVL KNA++R+ G RW QGVL RGTRVV+S FLPVG+
Sbjct: 121 DFRGKDFARVLRVVRVSERGAVLVCKNAWERTVLGFRW--QGVLRRGTRVVKSXFLPVGR 178
Query: 180 GLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
GL+I H+GS GS + + SRWIKH D +SGEEH FR
Sbjct: 179 GLEIAHIGSAGGSSNSAVIG---SRWIKHFDIRSGEEHVFR 216
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 223 | ||||||
| TAIR|locus:2050842 | 215 | AT2G45360 "AT2G45360" [Arabido | 0.946 | 0.981 | 0.627 | 2e-65 | |
| TAIR|locus:2101911 | 218 | AT3G60780 "AT3G60780" [Arabido | 0.964 | 0.986 | 0.558 | 3.2e-58 | |
| TAIR|locus:2026202 | 224 | AT1G62840 "AT1G62840" [Arabido | 0.968 | 0.964 | 0.515 | 3.5e-52 | |
| TAIR|locus:2034645 | 212 | AT1G12320 "AT1G12320" [Arabido | 0.923 | 0.971 | 0.479 | 5.4e-47 | |
| TAIR|locus:2167913 | 236 | AT5G62280 "AT5G62280" [Arabido | 0.919 | 0.868 | 0.280 | 3e-14 |
| TAIR|locus:2050842 AT2G45360 "AT2G45360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 140/223 (62%), Positives = 159/223 (71%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ AS AYIDTVKSC++ KESGVAE LSA AAGWNA+LIVE W+ G PITTS+G
Sbjct: 1 MKLVWSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIVETWSRGDPITTSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV--RQAEEVMGELKGVDFLV 118
LA+AA HT RHVCIVPDE+S+L YV AM V +EV+V E M E GVDFLV
Sbjct: 61 LAVAATHTGGRHVCIVPDEQSKLEYVLAMRGFV--TTEVVVVGESVENTMEEFPGVDFLV 118
Query: 119 VDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVG 178
VD ++F R LRFA+ SNKGAVL KNA R+ SG +W VL RGTRVVRSVFLPVG
Sbjct: 119 VDSKRREFVRTLRFAKLSNKGAVLVCKNAMHRAISGFKWHD--VLKRGTRVVRSVFLPVG 176
Query: 179 QGLDIVHVXXXXXXXXXXXMNKN-HSRWIKHVDQKSGEEHFFR 220
GLDIVHV ++N SRWI+HVD SGEEH FR
Sbjct: 177 SGLDIVHVGATGRGD-----SRNLRSRWIRHVDHLSGEEHLFR 214
|
|
| TAIR|locus:2101911 AT3G60780 "AT3G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 124/222 (55%), Positives = 151/222 (68%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
M+LVWSP+ AS AYI TV+SC++ ++S VAE LSA AAGWN +LIVE W+ G PI TS+G
Sbjct: 1 MRLVWSPETASNAYIHTVRSCKSYRDSSVAEFLSATAAGWNTRLIVETWSRGDPIATSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVS-EVIVRQ-AEEVMGELKGVDFLV 118
LA+AA HTC RHVCIVPDE SR Y M V S EV+V AE+V+ + GVDF+V
Sbjct: 61 LAVAAIHTCGRHVCIVPDEESRSEYEAVMRGAVTSDSTEVMVLDSAEDVVERISGVDFMV 120
Query: 119 VDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPVG 178
VD +F L A+ S GAVL KNA +S G +WQG +L RGTRVVRSVFLPVG
Sbjct: 121 VDSKRHEFVNALGLAKTSKMGAVLVCKNATLKSIPGFKWQG--LLRRGTRVVRSVFLPVG 178
Query: 179 QGLDIVHVXXXXXXXXXXXMNKNHSRWIKHVDQKSGEEHFFR 220
+GL+IVHV + K SRWIKH+D +SGEEH F+
Sbjct: 179 RGLEIVHVGASGGGNG---LRKIPSRWIKHIDPRSGEEHLFK 217
|
|
| TAIR|locus:2026202 AT1G62840 "AT1G62840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 117/227 (51%), Positives = 149/227 (65%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKL+WSP+ ASKAYIDTVKSCEN+ G AEL++AMAAGWNA LIVE W+ G I S+G
Sbjct: 1 MKLIWSPETASKAYIDTVKSCENLGTPGAAELVAAMAAGWNANLIVETWSEGETIAISVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWVSEVIV--RQAEEV---MGELKGV 114
L IA+RHT RH+CIVP+ RS+ AY++AM + + E I+ + EE+ M L+G+
Sbjct: 61 LNIASRHTNGRHICIVPNARSQTAYLQAMAEQSCSNLPETIIMNEEGEELEHTMQTLQGI 120
Query: 115 DFLVVDCTSKDFA-RVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSV 173
DFLVVD KDFA VLR A F ++GAV+ ++ ++RSTS W + DR VVR+V
Sbjct: 121 DFLVVDWDQKDFAANVLRNAVFGSRGAVVVCRSGYRRSTSCFSWT-KAFSDRN--VVRTV 177
Query: 174 FLPVGQGLDIVHVXXXXXXXXXXXMNKNHSRWIKHVDQKSGEEHFFR 220
LPV GL+I HV N N +WIKH DQ+SGEEH R
Sbjct: 178 TLPVSGGLEIAHVAAARSSGKSDN-NSNKRKWIKHFDQRSGEEHVIR 223
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| TAIR|locus:2034645 AT1G12320 "AT1G12320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 107/223 (47%), Positives = 144/223 (64%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ ASKAYIDTVKSCEN++ AEL++AMAAGWN KLIVE W+ G I +SIG
Sbjct: 1 MKLVWSPETASKAYIDTVKSCENLETPDAAELIAAMAAGWNVKLIVETWSEGDAIASSIG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEVMGELKGVDFL 117
L +A++H A+H+CIV + RS AY++A+ + + + ++ + + M +L+GVDFL
Sbjct: 61 LNVASKHANAKHICIVQNSRSESAYLQAIQESSSPLNFPETIVAEEPGKAMKKLQGVDFL 120
Query: 118 VVDCTSKDFARV-LRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLP 176
VVD +K+FA L+ A F N+GAV+ +N + S LR VL R +VVR+V LP
Sbjct: 121 VVDWRNKEFAAAALKNAAFGNRGAVVVCRNGY----SSLR----RVL-RDRKVVRTVTLP 171
Query: 177 VGQGLDIVHVXXXXXXXXXXXMNKNHSRWIKHVDQKSGEEHFF 219
V G++I HV N RWI HVDQ+SGEEH F
Sbjct: 172 VTGGIEIAHVAARNSGKS----GNNKRRWITHVDQRSGEEHVF 210
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| TAIR|locus:2167913 AT5G62280 "AT5G62280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 65/232 (28%), Positives = 105/232 (45%)
Query: 5 WSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIA 64
WS + A+KAY+ T+K+ + KE VAE +SA+AAG +A+ I A + L A
Sbjct: 4 WSAENATKAYLSTLKTDQRTKEPNVAEFISALAAGNSARKIAVACAGAANADILVALIAA 63
Query: 65 ARHTCARHVCIVPDERSRLAYVKAMY-DVVGWVSEVIVRQAEEVM--GELKGVDFLVVDC 121
A T + VC++ + K + + + V+ ++ + DF++VDC
Sbjct: 64 ANQTRGQVVCVLRGIEELIISQKMLEPSEIHQIQFVVGESNDDTLINNHFGEADFVLVDC 123
Query: 122 TSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQ-GQGVLDRGT-RVV---RSVFLP 176
++ ++ + N +NA SG+ G RG+ R ++ FLP
Sbjct: 124 NLENHQEIV--GKILNHHE----ENARTGGGSGVAVVVGYNAFSRGSWRFSDGRKTQFLP 177
Query: 177 VGQGLDIVHVXXXXXXXXXXXMNKNH--------SRWIKHVDQKSGEEHFFR 220
+G+GL + V M KNH SRW+ VD+ +GEEH FR
Sbjct: 178 IGEGLLVTRVNDNQKM-----MMKNHHRDQVMRKSRWVVKVDKCTGEEHVFR 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 223 212 0.00083 112 3 11 22 0.46 32
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 614 (65 KB)
Total size of DFA: 187 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.22u 0.08s 17.30t Elapsed: 00:00:03
Total cpu time: 17.22u 0.08s 17.30t Elapsed: 00:00:03
Start: Fri May 10 14:01:25 2013 End: Fri May 10 14:01:28 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00021356 | hypothetical protein (216 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 223 | |||
| pfam07279 | 218 | pfam07279, DUF1442, Protein of unknown function (D | 1e-104 |
| >gnl|CDD|115904 pfam07279, DUF1442, Protein of unknown function (DUF1442) | Back alignment and domain information |
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Score = 299 bits (766), Expect = e-104
Identities = 130/223 (58%), Positives = 159/223 (71%), Gaps = 9/223 (4%)
Query: 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIG 60
MKLVWSP+ ASKAYIDTVKSCEN+ G AELL+AMAAGWNA+LIVE W+ G PI TS+G
Sbjct: 1 MKLVWSPETASKAYIDTVKSCENLGTPGAAELLAAMAAGWNARLIVETWSEGDPIATSVG 60
Query: 61 LAIAARHTCARHVCIVPDERSRLAYVKAMYD-VVGWVSEVIV-RQAEEVMGELKGVDFLV 118
L +A+RHT RH+CIVP+ERS+ AY++AM + + E IV + E M L+GVDFLV
Sbjct: 61 LNVASRHTNGRHICIVPNERSQSAYLQAMREQSTSNLPETIVGEELEHTMETLQGVDFLV 120
Query: 119 VDCTSKDF-ARVLRFARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRSVFLPV 177
VD K+F A LR A+F N+GAV+ +N ++RS SG W + R RVVR+V LPV
Sbjct: 121 VDWKRKEFAANALRNAKFGNRGAVVVCRNGYRRSISGFSWTK---VLRDRRVVRTVTLPV 177
Query: 178 GQGLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220
G GL+I HV + GSG S N N RWIKHVDQ+SGEEH FR
Sbjct: 178 GGGLEIAHVAAA---GSGGSSNNNKRRWIKHVDQRSGEEHVFR 217
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This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Length = 218 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 100.0 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 100.0 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 100.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 100.0 | |
| PLN02476 | 278 | O-methyltransferase | 100.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 100.0 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 100.0 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.73 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.64 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 99.62 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.61 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.59 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.54 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.53 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.52 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.52 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.49 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.47 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.45 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.42 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.4 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.35 | |
| PLN02366 | 308 | spermidine synthase | 99.35 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.35 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.29 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.29 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.28 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.28 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.26 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.26 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.24 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.23 | |
| PLN02823 | 336 | spermine synthase | 99.22 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.19 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.18 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.18 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.15 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.15 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.13 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.12 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.12 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.11 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.11 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.1 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.08 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.07 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.06 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.05 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.05 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.04 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.02 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.0 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.0 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.0 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.99 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.97 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.96 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.96 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.95 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.94 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.94 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.94 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.93 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.93 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.93 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.92 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.92 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.9 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.89 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.89 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.89 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.89 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.89 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.88 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.87 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.86 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.85 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.85 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.84 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.84 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.83 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.83 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.82 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.81 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.8 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.79 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.77 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.77 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.74 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.74 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.72 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 98.71 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.71 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.7 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.7 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.7 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.68 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.67 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.66 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.65 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.63 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.63 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.62 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.61 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.59 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.56 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.56 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.56 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.55 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.54 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.54 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.51 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.5 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.48 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.47 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.46 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.45 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.44 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.43 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.42 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.42 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.4 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.38 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.37 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.37 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.37 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.37 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.36 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.34 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.34 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.31 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.31 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.29 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.27 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.25 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.24 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.23 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.22 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.18 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.18 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.17 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.16 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.16 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.16 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.07 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.05 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.03 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 98.02 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.01 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.0 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.97 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.9 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.89 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.88 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.81 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.77 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.74 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.74 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.72 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.71 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.69 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.66 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.66 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.59 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.59 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.52 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 97.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.42 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.38 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.37 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.37 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.32 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.26 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.26 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.25 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.17 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.15 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.15 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.14 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.14 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.13 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.13 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.06 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.02 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 96.96 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.91 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.87 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 96.85 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.83 | |
| PHA01634 | 156 | hypothetical protein | 96.79 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.75 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.72 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.68 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.67 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.62 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.61 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.57 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.56 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.54 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.37 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 96.36 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 96.36 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.25 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.01 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 95.99 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.96 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.94 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.79 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.63 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.43 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.41 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.34 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.26 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.17 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.98 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.95 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 94.9 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.88 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.87 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 94.86 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.73 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 94.66 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.52 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.44 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.43 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 93.95 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 93.42 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.29 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.28 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 93.09 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 92.73 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 92.66 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.48 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 92.14 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 92.11 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 92.08 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 92.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.99 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.99 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 91.66 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 91.65 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.62 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 91.57 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.36 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 91.29 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.18 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 91.18 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.18 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 90.99 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.96 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 90.94 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 90.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 90.81 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.74 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 90.35 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 90.21 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.12 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.1 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 90.08 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 90.04 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 89.9 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 89.86 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 89.78 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.71 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 89.68 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 89.27 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 89.16 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 89.06 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 88.96 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.57 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.51 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 88.39 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 88.23 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 88.21 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 87.79 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 87.7 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 87.65 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 87.5 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 87.46 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.27 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 87.23 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 86.98 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 86.9 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 86.89 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.79 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 86.75 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 86.7 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 86.6 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 86.28 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 86.25 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 86.17 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 86.16 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 85.93 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 85.67 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 85.66 | |
| PRK10310 | 94 | PTS system galactitol-specific transporter subunit | 85.64 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 85.5 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 85.44 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 85.39 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 85.3 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 84.56 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 84.53 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 84.5 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 84.45 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 84.43 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 84.29 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 84.15 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 84.05 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 84.04 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 83.98 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 83.96 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 83.84 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 83.77 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.61 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.51 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 83.44 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 83.43 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 83.35 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 83.27 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.23 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 83.21 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 83.09 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 82.76 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 82.74 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 82.74 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 82.57 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 82.57 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.57 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 82.35 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 82.33 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 82.21 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 82.19 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 82.09 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 82.01 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 81.79 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 81.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 81.5 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 81.5 | |
| PRK08643 | 256 | acetoin reductase; Validated | 81.37 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 81.34 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 81.25 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 81.24 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 81.23 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 81.22 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 81.13 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 81.12 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 81.04 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 80.94 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 80.88 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 80.84 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 80.78 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 80.44 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 80.43 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 80.41 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 80.4 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 80.36 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 80.26 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 80.25 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 80.2 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.04 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 80.03 | |
| PLN02602 | 350 | lactate dehydrogenase | 80.03 |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=391.16 Aligned_cols=213 Identities=62% Similarity=1.043 Sum_probs=194.4
Q ss_pred CccccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch
Q 027409 1 MKLVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER 80 (223)
Q Consensus 1 ~~~~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e 80 (223)
||++||||+|++|||+||++|+...+|++++||+.|++.++||.|+|+.+..|.+++||+||.|+++|+|+++||.++++
T Consensus 1 mkl~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~ 80 (218)
T PF07279_consen 1 MKLVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQ 80 (218)
T ss_pred CcceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChh
Confidence 89999999999999999999999999999999999999999999999988877667899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCce--EEEEecch-HHHhcCCCCccEEEEeCCCcccH-HHHHHhccCCCceEEEEeCCCCCCccccc
Q 027409 81 SRLAYVKAMYDVVGWV--SEVIVRQA-EEVMGELKGVDFLVVDCTSKDFA-RVLRFARFSNKGAVLAFKNAFQRSTSGLR 156 (223)
Q Consensus 81 ~~~~Ar~~~~~a~G~~--I~li~GdA-~evL~~L~~fDfVFIDa~K~~Y~-~~f~~~~~l~~GgvIV~DNvl~~g~~~~~ 156 (223)
.....++.+..+ |+. ++|+.|++ .+++++|...||++|||..++|. ++|+.+++.+.|+|||++|++.++...+.
T Consensus 81 ~~~~~~~~l~~~-~~~~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~r~~~~~~ 159 (218)
T PF07279_consen 81 SLSEYKKALGEA-GLSDVVEFVVGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFSRSTNGFS 159 (218)
T ss_pred hHHHHHHHHhhc-cccccceEEecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccccCCcCCcc
Confidence 999999999999 987 89999995 56899999999999999999999 99999998889999999999987655556
Q ss_pred cccccccccCCCceEEEEeecCCceEEEEEcccCCCCCCCCCCCcCccceEecccccCceeeee
Q 027409 157 WQGQGVLDRGTRVVRSVFLPVGQGLDIVHVGSTSGSGSGESMNKNHSRWIKHVDQKSGEEHFFR 220 (223)
Q Consensus 157 ~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (223)
|+. .++ +.+.++|++||||.||+|++...+.+.. ++++.|||||+|||+|||||||||
T Consensus 160 w~~--~~~-~~r~Vrsv~LPIG~GleVt~ig~~~~~~---~~~~~~srWi~~vD~~sGEeHv~R 217 (218)
T PF07279_consen 160 WRS--VLR-GRRVVRSVFLPIGKGLEVTRIGASGGSN---SSRRKKSRWIKHVDQCSGEEHVFR 217 (218)
T ss_pred HHH--hcC-CCCceeEEEeccCCCeEEEEEeecCCCC---CCCCCCccceEeeccCCCceeeec
Confidence 765 554 5678999999999999999999665433 455699999999999999999999
|
The function of this family is unknown. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=313.97 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=146.5
Q ss_pred HHHHHHHhhcccC-----------------CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEE
Q 027409 10 ASKAYIDTVKSCE-----------------NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARH 72 (223)
Q Consensus 10 a~~ayl~~l~~~~-----------------~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i 72 (223)
.-.+|+....+.. +++.|++|+||.+|+++.+||+||||||++|| ||||||.+... +|+|
T Consensus 11 ~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~Gy--Sal~mA~~l~~-~g~l 87 (219)
T COG4122 11 DLYDYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGY--SALWMALALPD-DGRL 87 (219)
T ss_pred HHHHHHHhhcccCCchHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCH--HHHHHHhhCCC-CCeE
Confidence 3457777777652 16679999999999999999999999999999 99999987654 7899
Q ss_pred EEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcC-C-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 73 VCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGE-L-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 73 ~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~-L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||||+||++++.||+||+++ |+. |+++. |||+++|.+ + ++||||||||+|.+|++||+.+ ++++|||+||+||
T Consensus 88 ~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 88 TTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 99999999999999999999 998 99999 699999997 3 5899999999999999999966 6679999999999
Q ss_pred CCCCCc--cccccccccc----------cccCCCceEEEEeecCCceEEEEEc
Q 027409 147 AFQRST--SGLRWQGQGV----------LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 147 vl~~g~--~~~~~~~r~~----------v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
|+++|. +....+.++. +. .+|+++++++|+|||++|++|.
T Consensus 167 vl~~G~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 167 VLFGGRVADPSIRDARTQVRGVRDFNDYLL-EDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred cccCCccCCccchhHHHHHHHHHHHHHHHh-hCcCceeEEEecCCceEEEeec
Confidence 999885 2210111111 22 5577999999999999999985
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=311.16 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=136.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 22 ENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 22 ~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
.++++|++|+||.+|+++.+||+||||||++|| ||+|||.+. +++|+|+|||+|+++++.|+++|+++ |++ |++
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~Gy--Sal~la~~l-~~~g~i~tiE~~~~~~~~A~~~~~~a-g~~~~I~~ 101 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTFTGY--SALWLAEAL-PEDGKITTIEIDPERAEIARENFRKA-GLDDRIEV 101 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSH--HHHHHHHTS-TTTSEEEEEESSHHHHHHHHHHHHHT-TGGGGEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEecccccc--HHHHHHHhh-cccceEEEecCcHHHHHHHHHHHHhc-CCCCcEEE
Confidence 357899999999999999999999999999999 999999874 56899999999999999999999999 997 999
Q ss_pred EecchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c---------ccccc
Q 027409 100 IVRQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L---------RWQGQ 160 (223)
Q Consensus 100 i~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~---------~~~~r 160 (223)
+.|||+++|++| ++||||||||+|.+|..||+.+ +++++||+||+||++++|. .. . .++.
T Consensus 102 ~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~- 180 (205)
T PF01596_consen 102 IEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNE- 180 (205)
T ss_dssp EES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHH-
T ss_pred EEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHH-
Confidence 999999999976 2699999999999999999976 5669999999999999884 11 1 1222
Q ss_pred cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 ~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
.+. ++|++++++||+||||+|++|+
T Consensus 181 -~i~-~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 181 -YIA-NDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp -HHH-H-TTEEEEEECSTTEEEEEEE-
T ss_pred -HHH-hCCCeeEEEEEeCCeeEEEEEC
Confidence 243 3467999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=305.54 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=138.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|++|+||.+|++..+|++||||||++|| ||||||.+. +++|+|+|||.|+++++.|+++|+++ |+. |+++.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~Gy--Sal~la~al-~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGY--SLLATALAL-PEDGKILAMDINRENYELGLPVIQKA-GVAHKIDFRE 137 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhH--HHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEe
Confidence 5589999999999999999999999999999 899999874 56899999999999999999999999 987 99999
Q ss_pred cchHHHhcCC-------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c-cccc-c--------
Q 027409 102 RQAEEVMGEL-------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L-RWQG-Q-------- 160 (223)
Q Consensus 102 GdA~evL~~L-------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~-~~~~-r-------- 160 (223)
|||+++|++| ++||||||||+|.+|++||+.+ +++++||+||+||++|+|. +. . ..+. .
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir 217 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVL 217 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHH
Confidence 9999999986 3799999999999999999976 5669999999999999884 11 0 0000 0
Q ss_pred ---cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 ---GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 ---~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
..+. .++++++++||+|||++|++|.
T Consensus 218 ~fn~~v~-~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 218 ELNKALA-ADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHH-hCCCEEEEEEEeCCccEEEEEe
Confidence 0233 4577999999999999999986
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=303.63 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|++|+||.+|+++.+||+||||||++|| ||||+|.+. +++|+|+|||.|+++++.|++||+++ |++ |+++.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGy--Sal~lA~al-~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl~~~I~li~ 176 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGY--SSLAVALVL-PESGCLVACERDSNSLEVAKRYYELA-GVSHKVNVKH 176 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 7799999999999999999999999999999 999999864 55899999999999999999999999 998 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--ccc----------ccccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SGL----------RWQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~~----------~~~~r~~ 162 (223)
|||+++|+++ ++||||||||+|.+|++||+.+ +++++||+||+||++|+|. ++. .++. .
T Consensus 177 GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~--~ 254 (278)
T PLN02476 177 GLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNK--K 254 (278)
T ss_pred cCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHH--H
Confidence 9999999876 3799999999999999999976 5669999999999999884 110 1111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEc
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
+. +++++++++||+|||++|++|+
T Consensus 255 v~-~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 255 LM-DDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred Hh-hCCCEEEEEEEeCCeeEEEEEC
Confidence 43 4577999999999999999984
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=271.29 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=136.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.+.|++|+||++|+++.+|++||||||++|| |++|||.+. +++|+|+|||+|+++++.|++||+++ |+. |+++.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~--s~l~la~~~-~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~i~~~~ 126 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGY--SLLTTALAL-PEDGRITAIDIDKEAYEVGLEFIKKA-GVDHKINFIQ 126 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6799999999999999999999999999999 899998764 55789999999999999999999999 987 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc---cccccc---------
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG---LRWQGQ--------- 160 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~---~~~~~r--------- 160 (223)
|||.+.|++| ++|||||+|++|.+|.+||+.+ +.++|||+||+||++|+|. +. ...+.+
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~ 206 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEF 206 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHH
Confidence 9999998875 3799999999999999999976 5679999999999999874 11 000000
Q ss_pred -cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 -GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 -~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
..+. .++++++++||+|||++|++|.
T Consensus 207 ~~~i~-~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 207 NKLLA-SDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHh-hCCCeEEEEEEeCCccEEEEEe
Confidence 0233 4567999999999999999985
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=262.41 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=137.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+.++|+.|+|+.+|+++.+||+.||||+++|| |+|++|.|. +.+|+|+|||+|++.++.+.+.++.| |+. |+++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGy--SaL~~Alal-p~dGrv~a~eid~~~~~~~~~~~k~a-gv~~KI~~i 130 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGY--SALAVALAL-PEDGRVVAIEIDADAYEIGLELVKLA-GVDHKITFI 130 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCH--HHHHHHHhc-CCCceEEEEecChHHHHHhHHHHHhc-cccceeeee
Confidence 38999999999999999999999999999999 787888765 55999999999999999999999999 998 9999
Q ss_pred ecchHHHhcCC------CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCCc---cc-------cccc---c-
Q 027409 101 VRQAEEVMGEL------KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRST---SG-------LRWQ---G- 159 (223)
Q Consensus 101 ~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g~---~~-------~~~~---~- 159 (223)
+|+|+|.|++| +.|||+|+||||.+|..|++ +++++|+||||++||++++|. ++ ...+ +
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~ 210 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNL 210 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhh
Confidence 99999999886 26999999999999999998 668889999999999998883 11 1111 1
Q ss_pred ccccccCCCceEEEEeecCCceEEEEEc
Q 027409 160 QGVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 160 r~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
-..+. .+|++..+++|+|||+.+++|+
T Consensus 211 n~~l~-~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 211 NKKLA-RDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhHhc-cCcceeeEeeeccCceeeeccC
Confidence 00233 3466999999999999999874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=148.48 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccC-cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-hcCce--EEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTH-GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-VVGWV--SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~-~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~--I~l 99 (223)
-..+-.+++|+.+... +|++|+||||| .|| ++++++.+ ..+++++++||+|+++++.||+++++ . |+. |+|
T Consensus 107 ~L~~lE~~~L~~~~~~-~p~~VldIGcGpgpl--taiilaa~-~~p~~~~~giD~d~~ai~~Ar~~~~~~~-gL~~rV~F 181 (296)
T PLN03075 107 KLSKLEFDLLSQHVNG-VPTKVAFVGSGPLPL--TSIVLAKH-HLPTTSFHNFDIDPSANDVARRLVSSDP-DLSKRMFF 181 (296)
T ss_pred HHHHHHHHHHHHhhcC-CCCEEEEECCCCcHH--HHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHhhhcc-CccCCcEE
Confidence 3467789999998887 99999999999 556 78888744 45689999999999999999999964 7 887 999
Q ss_pred EecchHHHhcCCCCccEEEEeC----CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDC----TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.|||.+..+.+++||+||++| +|+.+.++|+.+ +.++|||+++.=..
T Consensus 182 ~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 182 HTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999999765677899999998 699999999976 56799999998874
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=128.24 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=103.9
Q ss_pred HHHHHHhhccc---CCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 11 SKAYIDTVKSC---ENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 11 ~~ayl~~l~~~---~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
..||.+.-.+- ..+..|....++..++...+..+|||||||+|| .+..++... ..+|+|+++|+++++++.|++
T Consensus 43 ~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~--~t~~la~~~-~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 43 EYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGY--HAAVVAEIV-GKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred hcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccH--HHHHHHHhc-CCCCEEEEEeCCHHHHHHHHH
Confidence 34565544322 236788888888888888889999999999999 676776543 346899999999999999999
Q ss_pred HHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 88 AMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 88 ~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
++++. |+. |+++.||+.+..+...+||.||+++...++++- ..+.|+|||.+|+.
T Consensus 120 ~l~~~-g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~LkpgG~lvi~ 175 (212)
T PRK13942 120 TLKKL-GYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKP--LIEQLKDGGIMVIP 175 (212)
T ss_pred HHHHc-CCCCeEEEECCcccCCCcCCCcCEEEECCCcccchHH--HHHhhCCCcEEEEE
Confidence 99998 998 999999998766555689999999988777653 33467999998885
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-16 Score=120.29 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=46.4
Q ss_pred EEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEEEe
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLVVD 120 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVFID 120 (223)
|||||+.|+ ||+|++.++.+.+ ++++++|.++. .+.+++++++. ++. ++++.|+..+.++++ .+|||+|||
T Consensus 1 lEiG~~~G~--st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGY--STLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp ----------------------------EEEESS-------------G-GG-BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred Ccccccccc--ccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 799999999 8889988776544 48999999997 56677778777 776 999999999999987 489999999
Q ss_pred CC--CcccHHHHHHhcc-CCCceEEEEeCC
Q 027409 121 CT--SKDFARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 121 a~--K~~Y~~~f~~~~~-l~~GgvIV~DNv 147 (223)
++ .+.....|+.+.+ ++|||+||+||.
T Consensus 77 g~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 77 GDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp S---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 96 3555666666654 599999999984
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=123.85 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|+....+..++...+..+|||||||+|| .+.+|+.. .++++++|.++++++.|++++++. |+. ++++.|
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~--~t~~la~~----~~~v~~vd~~~~~~~~a~~~~~~~-~~~~v~~~~~ 133 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGY--QAAVLAHL----VRRVFSVERIKTLQWEAKRRLKQL-GLHNVSVRHG 133 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccH--HHHHHHHH----hCEEEEEeCCHHHHHHHHHHHHHC-CCCceEEEEC
Confidence 5688888888888888888999999999999 66666653 258999999999999999999999 998 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCCCCCcccc-cccc-ccccccCCCceEEEEeecCCc
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAFQRSTSGL-RWQG-QGVLDRGTRVVRSVFLPVGQG 180 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl~~g~~~~-~~~~-r~~v~~~~~~~~t~lLPiGDG 180 (223)
|+.+.++..++||+|++++...++++. ....|++||.+++.=- ..+.... .+.. ..-+. ....+.+.+.|+.+|
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~ 209 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIPRA--LLEQLKEGGILVAPVG-GEEQQLLTRVRKRGGRFE-REVLEEVRFVPLVKG 209 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhhHH--HHHhcCCCcEEEEEEc-CCCceEEEEEEEcCCeEE-EEEEccEEEEecCCC
Confidence 998776665789999999988777553 3466799999987532 2221110 1110 00011 123467788999998
Q ss_pred eE
Q 027409 181 LD 182 (223)
Q Consensus 181 l~ 182 (223)
++
T Consensus 210 ~~ 211 (212)
T PRK00312 210 EL 211 (212)
T ss_pred CC
Confidence 64
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=123.13 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=95.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|...+.+..++......+|||||||+|| .+++||... +++|+|+++|++++.++.|++++++. |+. ++++.|
T Consensus 60 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~a~~la~~~-~~~g~V~~vD~~~~~~~~A~~~~~~~-g~~~v~~~~~ 135 (215)
T TIGR00080 60 ISAPHMVAMMTELLELKPGMKVLEIGTGSGY--QAAVLAEIV-GRDGLVVSIERIPELAEKAERRLRKL-GLDNVIVIVG 135 (215)
T ss_pred echHHHHHHHHHHhCCCCcCEEEEECCCccH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCeEEEEC
Confidence 5567666666666777788999999999999 777777643 34689999999999999999999999 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++...+||+|++|+...++++. ..+.|++||.+++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~~~~~~~--~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAGPKIPEA--LIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCcccccHH--HHHhcCcCcEEEEE
Confidence 998876665689999999987777643 34567999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=126.46 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~ev 107 (223)
..++..++...+|++|||||||.|+ ++.+++.. .++++|+.+|+||+.++.|+++|... +. . ++++.|||.+.
T Consensus 55 ~~m~~~l~~~~~~~~vL~IG~G~G~--l~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGS--LAKFIYTY--LPDTRQTAVEINPQVIAVARNHFELP-ENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHhcCCCCCEEEEECCCHhH--HHHHHHHh--CCCCeEEEEECCHHHHHHHHHHcCCC-CCCCceEEEECCHHHH
Confidence 3344444555689999999999997 67677643 35789999999999999999999865 54 3 99999999999
Q ss_pred hcCC-CCccEEEEeCCCcc-------cHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 108 MGEL-KGVDFLVVDCTSKD-------FARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 108 L~~L-~~fDfVFIDa~K~~-------Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+++. ++||+||+|+.... ..++|+.+ +.|+|||+++++ ++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin-~~~ 179 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN-LWS 179 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE-cCC
Confidence 9876 48999999986543 26888876 567999999994 543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=120.48 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=91.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+-+|..-..+..++......+|||||||+|| .+..++... +.+|+|+++|+++++++.|++++++. |+. ++++.
T Consensus 55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~~~~la~~~-~~~g~V~~iD~~~~~~~~a~~~l~~~-~~~~~v~~~~ 130 (205)
T PRK13944 55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGY--QAAVCAEAI-ERRGKVYTVEIVKELAIYAAQNIERL-GYWGVVEVYH 130 (205)
T ss_pred echHHHHHHHHHhcCCCCCCEEEEECcCccH--HHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 4445444444344444455799999999999 776777654 34689999999999999999999998 886 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
||+.+.++...+||.||+++...++++ ++.+.|++||.+++..
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~~--~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAASTIPS--ALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCcccCCccCCCccEEEEccCcchhhH--HHHHhcCcCcEEEEEE
Confidence 999887766568999999998776654 3456679999998865
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=116.07 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCcc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fD 115 (223)
+...+.++|||||||+|+ .++.+|.. .++++|+.||.++++++.|+++.++. |+. |+++.||+.+. ...++||
T Consensus 38 ~~~~~~~~vLDiGcGtG~--~s~~la~~--~~~~~V~~iD~s~~~~~~a~~~~~~~-~~~~i~~i~~d~~~~-~~~~~fD 111 (181)
T TIGR00138 38 LEYLDGKKVIDIGSGAGF--PGIPLAIA--RPELKLTLLESNHKKVAFLREVKAEL-GLNNVEIVNGRAEDF-QHEEQFD 111 (181)
T ss_pred HHhcCCCeEEEecCCCCc--cHHHHHHH--CCCCeEEEEeCcHHHHHHHHHHHHHh-CCCCeEEEecchhhc-cccCCcc
Confidence 455678999999999998 77777643 34689999999999999999999998 987 99999999885 3235899
Q ss_pred EEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+|+.++ ..++..+++.+ +.++|||.+++-
T Consensus 112 ~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 112 VITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred EEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 999998 67888888865 567999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=121.56 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=104.8
Q ss_pred HHHHHHhhcc---cCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 11 SKAYIDTVKS---CENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 11 ~~ayl~~l~~---~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
..||.++-.+ ++.|-.|.....+..++......+|||||||.|| .|--||+- -|+|+|||++++..+.||+
T Consensus 39 ~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY--~aAvla~l----~~~V~siEr~~~L~~~A~~ 112 (209)
T COG2518 39 HLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGY--QAAVLARL----VGRVVSIERIEELAEQARR 112 (209)
T ss_pred cccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchH--HHHHHHHH----hCeEEEEEEcHHHHHHHHH
Confidence 4466666544 2347889888888899999999999999999999 55455543 3599999999999999999
Q ss_pred HHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCC
Q 027409 88 AMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 88 ~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
|++.. |+. |.++.||...-.+...+||-|++-|+-..-++-| +.-|++||.+|+---
T Consensus 113 ~L~~l-g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L--l~QL~~gGrlv~PvG 170 (209)
T COG2518 113 NLETL-GYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL--LDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHc-CCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH--HHhcccCCEEEEEEc
Confidence 99999 997 9999999999999888999999999988776544 334578898887543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=115.98 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=96.0
Q ss_pred HHHHHhhcccCCC---C-----cHHH-HHHHHHH---HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc
Q 027409 12 KAYIDTVKSCENI---K-----ESGV-AELLSAM---AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE 79 (223)
Q Consensus 12 ~ayl~~l~~~~~i---i-----~p~~-g~fL~~L---~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~ 79 (223)
+.|+.-|++-+.. . ++-. ..|+..+ .....+++|||||||+|+ .++++|.+ .++++|++||.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~--~al~la~~--~~~~~V~giD~s~ 79 (187)
T PRK00107 4 EAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGF--PGIPLAIA--RPELKVTLVDSLG 79 (187)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCH--HHHHHHHH--CCCCeEEEEeCcH
Confidence 4688888887751 1 1111 1222222 222336899999999998 77777653 3478999999999
Q ss_pred hHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 80 RSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 80 e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
++++.|+++.++. |+. ++++.+|+.+.-. .++||+||.++ ..++..+++.+ +.++|||.+++-
T Consensus 80 ~~l~~A~~~~~~~-~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 80 KKIAFLREVAAEL-GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEeccHhhCCC-CCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999999999 988 9999999988433 34899999987 46788899865 677999998865
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-14 Score=105.89 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfVF 118 (223)
-.+|||||||+|. .+++++. ..++++++.+|.+|++++.|++++.+. +.. |+++.+|+ +..... ++||+|+
T Consensus 2 ~~~vLDlGcG~G~--~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~-~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGR--LSIALAR--LFPGARVVGVDISPEMLEIARERAAEE-GLSDRITFVQGDA-EFDPDFLEPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSH--HHHHHHH--HHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTTEEEEESCC-HGGTTTSSCEEEEE
T ss_pred CCEEEEEcCcCCH--HHHHHHh--cCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECcc-ccCcccCCCCCEEE
Confidence 4789999999998 7878875 235789999999999999999999766 565 99999999 544544 6899999
Q ss_pred EeC-CCcccHH------HHHHh-ccCCCceEEEEe
Q 027409 119 VDC-TSKDFAR------VLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa-~K~~Y~~------~f~~~-~~l~~GgvIV~D 145 (223)
++. .-..|.. +++.+ +.++|||.++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999 4444544 47755 567999999875
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=113.93 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
++..+++.+++...+......+|||+|||+|+ .++++|.. .++++|+++|+++++++.|++|+++. |+. |+++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~--~~~~la~~--~~~~~V~~vD~s~~~~~~a~~n~~~~-~~~~v~~~~ 96 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGT--IPVEAGLL--CPKGRVIAIERDEEVVNLIRRNCDRF-GVKNVEVIE 96 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCeEEEE
Confidence 46777788877777776677899999999998 77777643 34689999999999999999999998 887 99999
Q ss_pred cchHHHhcCC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 102 RQAEEVMGEL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
||+.+.++.+ ..+|.+|+|+. ....++++.+ +.|+|||.+++...
T Consensus 97 ~d~~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 97 GSAPECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CchHHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 9999887776 36899999975 3557888765 57799999888864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=113.14 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..+++.+++-.++...+..+|||||||+|+ .++.++.. .++++++++|+++++++.|++|+++. ++. |+++.|
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~--~~~~la~~--~~~~~v~~vD~s~~~~~~a~~n~~~~-~~~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGS--VSIEAALQ--FPSLQVTAIERNPDALRLIKENRQRF-GCGNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCeEEEec
Confidence 4455566666556666788999999999998 77777654 34689999999999999999999998 887 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQR 150 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~ 150 (223)
|+...++ +.||+||+++....+.++++.+ +.|+|||.++...+...
T Consensus 89 d~~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 89 EAPIELP--GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred CchhhcC--cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHh
Confidence 9865443 4799999999888888888754 67799999999765443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=101.69 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=86.7
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~ 113 (223)
.+...+.++|||+|||.|+ .++.++.. .++++++++|.++.+.+.|+++++.. ++. ++++.+|+.+.++.. +.
T Consensus 14 ~~~~~~~~~vldlG~G~G~--~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGS--ITIEAARL--VPNGRVYAIERNPEALRLIERNARRF-GVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HcCCCCCCEEEEeCCCCCH--HHHHHHHH--CCCceEEEEcCCHHHHHHHHHHHHHh-CCCceEEEeccccccChhhcCC
Confidence 3344455799999999998 77677643 23589999999999999999999998 887 999999988755544 58
Q ss_pred ccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
||.|+++.....+.++++.+ +.++|||.++++
T Consensus 89 ~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999888999999855 678999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=111.38 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCcHHHHHHHH-HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEE
Q 027409 24 IKESGVAELLS-AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~-~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li 100 (223)
.++++-.+.+. ..+......+|||+|||+|+ .++.+|... .++++|+++|+++++++.|++|+++. |+ . ++++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~--~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~-g~~~~v~~~ 97 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGS--VTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKF-GVLNNIVLI 97 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCCeEEE
Confidence 45544333333 23334466799999999998 676666543 34689999999999999999999998 95 3 9999
Q ss_pred ecchHHHhcCC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 101 VRQAEEVMGEL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
.||+.+.++.+ +.||.||+......+.++++.+ +.++|||.++.+..-.
T Consensus 98 ~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 98 KGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 99999988877 5899999988888899999865 6779999999887644
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=117.07 Aligned_cols=131 Identities=17% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHhhcc---cCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH
Q 027409 12 KAYIDTVKS---CENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 12 ~ayl~~l~~---~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
.||.+.-.+ +..+-.|..-..+..++.+..-.+|||||||+|| .|-.||.-. .+.|+|+|||++++.++.|+++
T Consensus 40 ~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY--~aAlla~lv-g~~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 40 LAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGY--QAALLAHLV-GPVGRVVSVERDPELAERARRN 116 (209)
T ss_dssp GTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSH--HHHHHHHHH-STTEEEEEEESBHHHHHHHHHH
T ss_pred CCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcH--HHHHHHHhc-CccceEEEECccHHHHHHHHHH
Confidence 455555443 2236678776666666778888999999999999 443444332 4468999999999999999999
Q ss_pred HHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 89 MYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 89 ~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
+++. |+. |+++.||+.+-++...+||.|++.+.-..-+.- .+..|++||.+|+---.
T Consensus 117 l~~~-~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~--l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 117 LARL-GIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEA--LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp HHHH-TTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HH--HHHTEEEEEEEEEEESS
T ss_pred HHHh-ccCceeEEEcchhhccccCCCcCEEEEeeccchHHHH--HHHhcCCCcEEEEEEcc
Confidence 9999 998 999999999877776799999999987665533 23446899999986543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=110.69 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
+|+-.+.-..++..+-.++++||||+|- -++-+|. ..+.|+++.||.|++.++..++|.+++ |++ ++++.|+|-
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGs--i~iE~a~--~~p~~~v~AIe~~~~a~~~~~~N~~~f-g~~n~~vv~g~Ap 94 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGS--ITIEWAL--AGPSGRVIAIERDEEALELIERNAARF-GVDNLEVVEGDAP 94 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccH--HHHHHHH--hCCCceEEEEecCHHHHHHHHHHHHHh-CCCcEEEEeccch
Confidence 4444444555667778899999999996 6776653 356899999999999999999999999 998 999999999
Q ss_pred HHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 106 EVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
+.|+++..||-|||=.. .++...++.+ ..|++||-||++=+....
T Consensus 95 ~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 95 EALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999988999999999 9999999976 567999999998775433
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=113.34 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=99.2
Q ss_pred HHHHHhhcccCC-----CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHH
Q 027409 12 KAYIDTVKSCEN-----IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYV 86 (223)
Q Consensus 12 ~ayl~~l~~~~~-----ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar 86 (223)
..||+..+.... +++|.++.+++++.. ...+|||||||+|+ .++.+|.. .++++++++|+++++++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~--~~~~la~~--~p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 8 RGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGE--FLVEMAKA--NPDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred ccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCH--HHHHHHHH--CCCccEEEEEechHHHHHHH
Confidence 456666555332 788999999999998 78899999999998 67677643 34679999999999999999
Q ss_pred HHHHhhcCce-EEEEecchHHHhcC-C--CCccEEEEeC---CC--------cccHHHHHHh-ccCCCceEEEE
Q 027409 87 KAMYDVVGWV-SEVIVRQAEEVMGE-L--KGVDFLVVDC---TS--------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 87 ~~~~~a~G~~-I~li~GdA~evL~~-L--~~fDfVFIDa---~K--------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++++.. ++. ++++.+|+.+.++. + ..||.|++.. +. ..+..+++.+ +.++|||.++.
T Consensus 82 ~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 82 KKIEEE-GLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHHc-CCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 999998 887 99999999666663 4 3799999843 11 1267888765 67899998865
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=113.46 Aligned_cols=132 Identities=18% Similarity=0.088 Sum_probs=108.1
Q ss_pred HHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 13 AYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 13 ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.|+..+.-...||-|--..++.+.+.+..-.+|||.|||.|. .|..||.+.. +.|+|+|.|+.+++++.|++|++++
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~--lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGA--LTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchH--HHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHh
Confidence 455554444457877778889999999999999999999997 7778887654 4699999999999999999999999
Q ss_pred cCce--EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 93 VGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 93 ~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|+. |++..||..+.+... .||-||+|-- +=-++++.+ ..|+|||.+++-+-....
T Consensus 143 -~l~d~v~~~~~Dv~~~~~~~-~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 143 -GLGDRVTLKLGDVREGIDEE-DVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred -ccccceEEEecccccccccc-ccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 888 999999999977765 8999999973 334567755 567999999998765433
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=114.07 Aligned_cols=116 Identities=8% Similarity=0.003 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+.+|..-..+...+...+..+|||||||+|| .++.+|... +..|+|+++|+++++++.|++++++. |+. ++++.|
T Consensus 63 ~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~--~a~~LA~~~-~~~g~VvgVDis~~~l~~Ar~~l~~~-g~~nV~~i~g 138 (322)
T PRK13943 63 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVRRL-GIENVIFVCG 138 (322)
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEEeCCccH--HHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEeC
Confidence 4456554444444455566899999999999 777777543 33578999999999999999999998 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++...+||.|++++...+-++. ..+.+++||.+++.
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~ip~~--~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDEVPET--WFTQLKEGGRVIVP 179 (322)
T ss_pred ChhhcccccCCccEEEECCchHHhHHH--HHHhcCCCCEEEEE
Confidence 999887776789999999876654432 34567888877663
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=116.76 Aligned_cols=107 Identities=11% Similarity=0.005 Sum_probs=80.6
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH-----Hhh-cCce-EEEEecchHHHh
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM-----YDV-VGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~-----~~a-~G~~-I~li~GdA~evL 108 (223)
++...+|++||+||+|.|+ +...++. .++..+|+.+|+|+++++.|++++ .+. +... ++++.|||.+.|
T Consensus 145 m~~h~~PkrVLIIGgGdG~--tlrelLk--~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 145 MSKVIDPKRVLILGGGDGL--ALREVLK--YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred HHhCCCCCEEEEECCCHHH--HHHHHHh--cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 4456899999999999987 4333332 234579999999999999999842 222 1223 999999999999
Q ss_pred cCC-CCccEEEEeCCCc-------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 109 GEL-KGVDFLVVDCTSK-------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~-------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.. +.||+||+|.... .| .++|+.+ +.|+|||++|+-.
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 876 4799999996432 45 6677776 5679999998864
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=111.92 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHHHHHHH-----hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce---EE
Q 027409 28 GVAELLSAMAA-----GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV---SE 98 (223)
Q Consensus 28 ~~g~fL~~L~~-----~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~ 98 (223)
+...+-.+|+. ..+|++||+||+|.|. ++.++++ .++..+|+.+|+|++.++.||++|... .+++ ++
T Consensus 73 de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~--~~rellk--~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~ 148 (308)
T PLN02366 73 DECAYQEMITHLPLCSIPNPKKVLVVGGGDGG--VLREIAR--HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVN 148 (308)
T ss_pred cHHHHHHHHHHHHHhhCCCCCeEEEEcCCccH--HHHHHHh--CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceE
Confidence 33344445443 3689999999999997 5555543 244478999999999999999999764 1232 99
Q ss_pred EEecchHHHhcCC-C-CccEEEEeCCCcc-------cHHHHHHh-ccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGEL-K-GVDFLVVDCTSKD-------FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~L-~-~fDfVFIDa~K~~-------Y~~~f~~~-~~l~~GgvIV~D 145 (223)
++.|||.+.+.+. + .||+||+|+.... +.++|+.+ +.|+|||+++..
T Consensus 149 vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 149 LHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9999999999876 3 7999999986532 45778876 567999999763
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-12 Score=111.63 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=79.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc---e-EEEEecchHHHhcCC-CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW---V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~---~-I~li~GdA~evL~~L-~~ 113 (223)
.+|++||+||||.|+ .+.+++. .+...+|+.+|+|++.++.|+++|... .|. . ++++.|||.+.++.. +.
T Consensus 75 ~~p~~VL~iG~G~G~--~~~~~l~--~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 75 PNPKRVLIIGGGDGG--TLREVLK--HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCCEEEEEecCchH--HHHHHHc--CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 489999999999997 5555542 334568999999999999999999864 122 2 999999999998865 47
Q ss_pred ccEEEEeCCC------ccc-HHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTS------KDF-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K------~~Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
||+|++|+.. ..| .++|+.+ +.|++||++++.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999732 223 5566766 567999999974
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-11 Score=105.67 Aligned_cols=127 Identities=16% Similarity=0.033 Sum_probs=90.6
Q ss_pred HHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 14 YIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 14 yl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
|...|.-.-.||=|--..++-+.+.+..=.+|||.|||.|. .|++||.+.. +.|+|+|.|.++++++.|++||++.
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~--lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~- 88 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGS--LTHALARAVG-PTGHVYTYEFREDRAEKARKNFERH- 88 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSH--HHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHT-
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHH--HHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHc-
Confidence 44554444457777777888888899999999999999997 8889988765 4799999999999999999999999
Q ss_pred Cce--EEEEecchHH-Hhc-CC-CCccEEEEeC-CCcccHHHHHHhccC-CCceEEEEeC
Q 027409 94 GWV--SEVIVRQAEE-VMG-EL-KGVDFLVVDC-TSKDFARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 94 G~~--I~li~GdA~e-vL~-~L-~~fDfVFIDa-~K~~Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
|+. |++..+|..+ -.+ ++ ..+|-||+|- ++-++.+... +.| ++||.|++=.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~--~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAK--RALKKPGGRICCFS 146 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHH--HHE-EEEEEEEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHH--HHHhcCCceEEEEC
Confidence 997 9999999964 443 34 4799999997 3444544443 345 7999998854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=98.08 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=81.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDf 116 (223)
.+-.+||++|||+|+ .++.|+. ...++++++.+|.++++++.|++.+++. ++. ++|+.+|+.+ ++.. +.||+
T Consensus 2 ~~~~~iLDlGcG~G~--~~~~l~~-~~~~~~~i~gvD~s~~~i~~a~~~~~~~-~~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR--LLIQLAK-ELNPGAKIIGVDISEEMIEYAKKRAKEL-GLDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSH--HHHHHHH-HSTTTSEEEEEESSHHHHHHHHHHHHHT-TSTTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcH--HHHHHHH-hcCCCCEEEEEECcHHHHHHhhcccccc-cccccceEEeehhc-cccccCCCeeE
Confidence 456899999999998 7767763 2345789999999999999999999999 998 9999999999 7753 68999
Q ss_pred EEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCC
Q 027409 117 LVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 117 VFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+.+..-... ..+++.+ +.+++||++++-..-
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999754222 3456544 567888888766543
|
... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=114.38 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHHHH------HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EE
Q 027409 28 GVAELLSAMA------AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SE 98 (223)
Q Consensus 28 ~~g~fL~~L~------~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~ 98 (223)
.+|-||.+-. +..+.++|||+||++|+ .+++.+. ....+|+++|+++..++.|++|++.. |+. ++
T Consensus 201 ktG~flDqr~~R~~~~~~~~g~rVLDlfsgtG~--~~l~aa~---~ga~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~ 274 (396)
T PRK15128 201 KTGYYLDQRDSRLATRRYVENKRVLNCFSYTGG--FAVSALM---GGCSQVVSVDTSQEALDIARQNVELN-KLDLSKAE 274 (396)
T ss_pred ccCcChhhHHHHHHHHHhcCCCeEEEeccCCCH--HHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEE
Confidence 3455655433 55678999999999997 6655432 22358999999999999999999998 873 99
Q ss_pred EEecchHHHhcCC----CCccEEEEeCC-----C-------cccHHHHHHh-ccCCCceEEEE
Q 027409 99 VIVRQAEEVMGEL----KGVDFLVVDCT-----S-------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 99 li~GdA~evL~~L----~~fDfVFIDa~-----K-------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++.||+.+.|+++ ..||+||+|.- | ..|.+++... +.+++||++++
T Consensus 275 ~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 275 FVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred EEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999999998764 37999999943 2 3577777754 66799998875
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=103.44 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcccCC------CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHH
Q 027409 9 AASKAYIDTVKSCEN------IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSR 82 (223)
Q Consensus 9 ~a~~ayl~~l~~~~~------ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~ 82 (223)
..++.|-++.-.... ++..+..++|..+. .++.+|||||||+|+ .+++|+.. +.+++.+|++++++
T Consensus 8 ~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~--~a~~la~~----g~~v~~vD~s~~~l 79 (255)
T PRK11036 8 DIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQ--TAIKLAEL----GHQVILCDLSAEMI 79 (255)
T ss_pred hHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchH--HHHHHHHc----CCEEEEEECCHHHH
Confidence 345555555433321 23344455665553 567899999999998 77777642 57999999999999
Q ss_pred HHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 83 LAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 83 ~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.|+++.++. |+. ++++.||+.+..+.. +.||+|++..-- .+-..+++.+ +.++|||.++.
T Consensus 80 ~~a~~~~~~~-g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 80 QRAKQAAEAK-GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHHHHHHHhc-CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999998 875 999999998864433 489999987532 2334667644 67899999865
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=113.65 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+...++..++...+.++|||+|||.|. .|+++|... .++|+|+++|+++++++.+++|+++. |+. |+++.|
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~-~~~~~v~avDi~~~~l~~~~~n~~~~-g~~~v~~~~~ 308 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGG--KTTHIAELL-KNTGKVVALDIHEHKLKLIEENAKRL-GLTNIETKAL 308 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 4566677788877777777899999999998 777777543 34689999999999999999999999 998 999999
Q ss_pred chHHHhcCC-CCccEEEEeCCCcc-------------------------cHHHHHH-hccCCCceEEEEeC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCTSKD-------------------------FARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~K~~-------------------------Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.+.++.+ +.||+||+|+.-.. ..++++. .+.++|||.+|...
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 998865555 47999999975221 1234553 36779999999765
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=98.82 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..+|...+...++++|||+|||+|+ .++.++.. +.+++++|.++++++.|+++++.. +..++++.+|+.+.+.
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGL--VAIRLKGK----GKCILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGVR 80 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhH--HHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEcccccccC
Confidence 4677677778888999999999998 66666532 238999999999999999999988 8789999999877543
Q ss_pred CCCCccEEEEeCC------------------------CcccHHHHHHh-ccCCCceEEEE-eCCC
Q 027409 110 ELKGVDFLVVDCT------------------------SKDFARVLRFA-RFSNKGAVLAF-KNAF 148 (223)
Q Consensus 110 ~L~~fDfVFIDa~------------------------K~~Y~~~f~~~-~~l~~GgvIV~-DNvl 148 (223)
+.||+|+.+.- ...+.++++.+ +.|+|||.++. ++..
T Consensus 81 --~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 81 --GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred --CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 48999998731 01145667655 66788886544 4433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-11 Score=100.36 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=80.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCcc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fD 115 (223)
+.....++|||||||+|. .+..++... +++++++.+|+++++++.|++++++. ++. ++++.||+.+.-..-+.||
T Consensus 41 l~~~~~~~vLDiGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTAD--WSIALAEAV-GPEGHVIGLDFSENMLSVGRQKVKDA-GLHNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred cCCCCCCEEEEeCCCcCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEechhcCCCCCCCcc
Confidence 344456799999999997 666676543 34689999999999999999999988 887 9999999977421224799
Q ss_pred EEEEeCC---CcccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLVVDCT---SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~---K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+|++... -.++.++++.+ +.|+|||.+++
T Consensus 117 ~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 117 YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 9998753 34566667644 67799998875
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=99.41 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
..++.++......++|||+|||+|+ .++.++ + +. .++|+.+|.|++.++.|++|++.. |.. ++++.||+.+.+
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~--l~l~~l-s-r~-a~~V~~vE~~~~a~~~a~~Nl~~~-~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGA--LGLEAL-S-RY-AAGATLLEMDRAVAQQLIKNLATL-KAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccH--HHHHHH-H-cC-CCEEEEEECCHHHHHHHHHHHHHh-CCCcEEEEEchHHHHH
Confidence 3456777665667899999999997 666432 1 21 368999999999999999999999 987 999999999988
Q ss_pred cCC-CCccEEEEeCC--CcccHHHHHHhc---cCCCceEEEEeC
Q 027409 109 GEL-KGVDFLVVDCT--SKDFARVLRFAR---FSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~--K~~Y~~~f~~~~---~l~~GgvIV~DN 146 (223)
+.. .+||+||+|-- ++.+.+.++.+. .+.++++|++..
T Consensus 116 ~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 654 36999999986 555666667663 257888888764
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=119.92 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=88.1
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcC
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGE 110 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~ 110 (223)
.++....+.++|||+||++|. .++++|.+ ...+|+++|.+++.++.|++|++.. |++ ++++.||+.+.|++
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~--~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGT--ASVHAALG---GAKSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKE 604 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCH--HHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHH
Confidence 446666778999999999998 88887643 1236999999999999999999998 874 99999999999876
Q ss_pred C-CCccEEEEeCCC--------------cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 111 L-KGVDFLVVDCTS--------------KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 111 L-~~fDfVFIDa~K--------------~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+ .+||+||+|.-. ..|.+++..+ ++++|||++++.+-.
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 6 479999999631 2477777754 677999999887653
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=107.63 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=78.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCC-CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L-~~f 114 (223)
.+|++||.||+|.|+ ++.+++. .++..+|+.+|+|++.++.||++|... -++ . ++++.|||.+.|.+. +.|
T Consensus 102 ~~pk~VLiiGgG~G~--~~re~l~--~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGS--TAREVLR--HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchH--HHHHHHh--CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 479999999999987 5544442 233468999999999999999998643 022 2 999999999999876 489
Q ss_pred cEEEEeCCCc--------cc-HHHHH-Hh-ccCCCceEEEEe
Q 027409 115 DFLVVDCTSK--------DF-ARVLR-FA-RFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~--------~Y-~~~f~-~~-~~l~~GgvIV~D 145 (223)
|+||+|+... .| .+||+ .+ +.|+|||++|+.
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999997431 23 56777 66 467999999874
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=103.48 Aligned_cols=118 Identities=20% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHHHH-h---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAA-G---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~-~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+..|++..++...+. . .++++|||+|||+|. .++++|.. .++++++.+|++++.++.|++|.++. |+. |
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~~~la~~--~~~~~v~avDis~~al~~A~~n~~~~-~~~~~i 174 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGC--IAIACAYA--FPEAEVDAVDISPDALAVAEINIERH-GLEDRV 174 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcE
Confidence 567788888877654 2 346899999999998 67677643 34689999999999999999999998 885 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeCC----------------------------CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDCT----------------------------SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa~----------------------------K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+++.||+.+.++. ..||+|+.|-- -+.|..++..+ +.|++||.++++--
T Consensus 175 ~~~~~D~~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 175 TLIQSDLFAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECchhhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999999876642 36999998720 01245555543 56799999997643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=108.82 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+..+++..++......+|||+|||.|. .|+.+|.. ..++|+|+++|+++++++.+++|+++. |+. |+++.+
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGg--kt~~la~~-~~~~g~V~a~Dis~~rl~~~~~n~~r~-g~~~v~~~~~ 295 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGG--KTTAIAEL-MKDQGKILAVDISREKIQLVEKHAKRL-KLSSIEIKIA 295 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEEC
Confidence 4556667788777777788899999999997 77777754 445789999999999999999999999 998 999999
Q ss_pred chHHHhcCC-CCccEEEEeCCCc-------------------------ccHHHHH-HhccCCCceEEEEeC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCTSK-------------------------DFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~K~-------------------------~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|+.+.-..+ +.||.||+|+--. .+.+.++ ..+.++|||.+|..-
T Consensus 296 Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 296 DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998753233 4799999997431 1233454 336779999988765
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=99.54 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=78.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
....+|||||||+|. .+++++.....++++++.+|.++++++.|++++++. |.. |+++.||+.+.. +..+|+|
T Consensus 55 ~~~~~vLDlGcGtG~--~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~~~~v~~~~~d~~~~~--~~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGA--ATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIA--IENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEeCChhhCC--CCCCCEE
Confidence 356799999999998 666776544456799999999999999999999998 775 999999998742 2468887
Q ss_pred EEeC-----CCcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 118 VVDC-----TSKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 118 FIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
+.-. ..++-..+++.+ +.|+|||.++. |.+..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 7532 122335677655 67788888665 44433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=96.72 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=80.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--C-Ccc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--K-GVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~-~fD 115 (223)
....+|||||||.|. .++++|.. .+++.++.+|+++++++.|+++.++. |+. |+++.||+.+.++.+ + .+|
T Consensus 15 ~~~~~ilDiGcG~G~--~~~~la~~--~p~~~v~gvD~~~~~l~~a~~~~~~~-~l~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCGKGR--FLIDMAKQ--NPDKNFLGIEIHTPIVLAANNKANKL-GLKNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCCceEEEeCCCccH--HHHHHHHh--CCCCCEEEEEeeHHHHHHHHHHHHHh-CCCCEEEEccCHHHHHHhhCCCCcee
Confidence 567799999999998 67677643 45789999999999999999999998 998 999999999977653 2 699
Q ss_pred EEEEeC---C-C-------cccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLVVDC---T-S-------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa---~-K-------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.||++. + | -.+.+++..+ +.|+|||.+++
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 999974 1 1 1236788755 67899998753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=100.38 Aligned_cols=117 Identities=8% Similarity=0.050 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
+.....+...++......+||++|||.|. -|+.+|.. ..+.|+|+++|+++++++.+++|+++. |+. |+++.+|+
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~-~~~~g~v~a~D~~~~~l~~~~~n~~~~-g~~~v~~~~~D~ 131 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGG--KTTQISAL-MKNEGAIVANEFSKSRTKVLIANINRC-GVLNVAVTNFDG 131 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchH--HHHHHHHH-cCCCCEEEEEcCCHHHHHHHHHHHHHc-CCCcEEEecCCH
Confidence 33344444444444555789999999997 77777654 444689999999999999999999999 988 99999999
Q ss_pred HHHhcCCCCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 105 EEVMGELKGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.........||.||+|+--.. ..+.++ +++.++|||.||.--
T Consensus 132 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 132 RVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred HHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 875333357999999973221 133554 336679999988553
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=100.83 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=79.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----ce-EEEEecchHHHhcCC-CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----WV-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----~~-I~li~GdA~evL~~L-~~ 113 (223)
.+|++||+||+|.|. .+.+++. ..+..+++.+|+|++.++.|+++|... + .. ++++.+|+.+.+.+. ++
T Consensus 71 ~~p~~VL~iG~G~G~--~~~~ll~--~~~~~~v~~veid~~vi~~a~~~~~~~-~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGG--VLREVLK--HKSVEKATLVDIDEKVIELSKKFLPSL-AGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCEEEEEcCCchH--HHHHHHh--CCCcceEEEEeCCHHHHHHHHHHhHhh-cccccCCceEEEECchHHHHHhCCCC
Confidence 478999999999996 4444432 233468999999999999999999764 2 12 899999999999876 48
Q ss_pred ccEEEEeCCCc------c-cHHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCTSK------D-FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~------~-Y~~~f~~~-~~l~~GgvIV~D 145 (223)
||+|++|+... . ..++|+.+ +.|+|||++++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99999998522 1 35677766 567999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=108.18 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.++..+...++....-++|||+|||.|+ .|++++... ..+|+|+++|+++++++.+++++++. |+. |+++.+
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~--kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~v~~~~~ 308 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGG--KSTFMAELM-QNRGQITAVDRYPQKLEKIRSHASAL-GITIIETIEG 308 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 4444444555555555555799999999998 777777543 34689999999999999999999999 998 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCc-------------------------ccHHHHHH-hccCCCceEEEEeC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSK-------------------------DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~-------------------------~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.+..+. ..||.||+|+--. ...+++.. .+.++|||.+|..-
T Consensus 309 Da~~~~~~-~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 309 DARSFSPE-EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred cccccccC-CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99876532 4799999995210 12235543 36779999999866
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=92.99 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~ 110 (223)
+|...+...+.++|||+|||+|+ .+++++. ..++.+|+.+|+|++.++.|++|++.. +++ ++++.+|..+-++
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~--i~~~la~--~~~~~~v~~vDi~~~a~~~a~~n~~~n-~~~~v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGV--ISLALAK--RGPDAKVTAVDINPDALELAKRNAERN-GLENVEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSH--HHHHHHH--TSTCEEEEEEESBHHHHHHHHHHHHHT-TCTTEEEEESSTTTTCC-
T ss_pred HHHHHHhhccCCeEEEecCChHH--HHHHHHH--hCCCCEEEEEcCCHHHHHHHHHHHHhc-Ccccccccccccccccc-
Confidence 44444444489999999999998 6767764 344678999999999999999999999 998 9999999988666
Q ss_pred CCCccEEEEeC----CCc----ccHHHHHHh-ccCCCceEEE
Q 027409 111 LKGVDFLVVDC----TSK----DFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 111 L~~fDfVFIDa----~K~----~Y~~~f~~~-~~l~~GgvIV 143 (223)
.+.||+|+..- ... ...++++.. +.|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 35899999973 222 345666544 5678899763
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=98.51 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~f 114 (223)
+.....++|||||||+|. .++.++.. ..++++|+.+|+++++++.|++++++. |+. ++++.||+.+ ++-- +.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~--~~~~~a~~-~g~~~~v~gvD~s~~~l~~A~~~~~~~-g~~~v~~~~~d~~~-l~~~~~~f 147 (272)
T PRK11873 73 AELKPGETVLDLGSGGGF--DCFLAARR-VGPTGKVIGVDMTPEMLAKARANARKA-GYTNVEFRLGEIEA-LPVADNSV 147 (272)
T ss_pred ccCCCCCEEEEeCCCCCH--HHHHHHHH-hCCCCEEEEECCCHHHHHHHHHHHHHc-CCCCEEEEEcchhh-CCCCCCce
Confidence 445677899999999997 55555543 345689999999999999999999998 987 9999999865 4422 479
Q ss_pred cEEEEeCC---CcccHHHHHH-hccCCCceEEEEeCCCC
Q 027409 115 DFLVVDCT---SKDFARVLRF-ARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 115 DfVFIDa~---K~~Y~~~f~~-~~~l~~GgvIV~DNvl~ 149 (223)
|+|+..+. ..+..++|+. .+.|+|||.++.-++..
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 99998874 2345677864 47789999999876553
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=105.89 Aligned_cols=118 Identities=12% Similarity=0.158 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
++....+++..++....-.+|||+|||.|. .|+.+|.. +.+.|+|+++|+++++++.+++|+++. |+. |+++.+|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~-~~~~g~v~a~D~~~~rl~~~~~n~~r~-g~~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGG--KTTHIAEL-MGDQGEIWAVDRSASRLKKLQENAQRL-GLKSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCch--hHHHHHHH-hCCCceEEEEcCCHHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 344455666666655566899999999998 77777754 345689999999999999999999999 998 9999999
Q ss_pred hHHHhcC---C-CCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 104 AEEVMGE---L-KGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~---L-~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+.+.... . +.||.||+|+--.. -.+.++ +.+.++|||.+|.-.
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9876532 2 37999999974211 134454 346779999887654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=85.43 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=75.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVF 118 (223)
.+|||+|||.|. ..++++... ..+++.+|+||+.++.|+.++... ++. ++++.||+.+..+.+ .+||+|+
T Consensus 2 ~~vlD~~~G~G~--~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGT--FLLAALRRG---AARVTGVDIDPEAVELARRNLPRN-GLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCH--HHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHC-TTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHH--HHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHc-cCCceEEEEECchhhchhhccCceeEEEE
Confidence 479999999997 555555432 479999999999999999999998 885 999999999988655 4899999
Q ss_pred EeCCCc-----------ccHHHHHHh-ccCCCceEEEE
Q 027409 119 VDCTSK-----------DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~-----------~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.|.-=. .|..+++.+ +.+++||++++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 985322 356777755 56799998874
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=93.51 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=82.7
Q ss_pred HHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch
Q 027409 29 VAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA 104 (223)
Q Consensus 29 ~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA 104 (223)
..+++..++.. ....+|||||||+|. .++.++.....++++++.+|+++++++.|+++++.. +.. ++++.||+
T Consensus 39 ~~~~~~~l~~~~~~~~~~iLDlGcG~G~--~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~~~~~v~~~~~d~ 115 (239)
T TIGR00740 39 IITAIGMLAERFVTPDSNVYDLGCSRGA--ATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDI 115 (239)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCCH--HHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECCh
Confidence 33444444432 255689999999998 666676543446899999999999999999999987 654 99999999
Q ss_pred HHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 105 EEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+.- +..+|+|++-.. .++...+++.+ +.|+|||.+++-+.+
T Consensus 116 ~~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 116 RHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 8742 346898876532 22345677654 677888888876644
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=104.40 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++.....+...++......+|||+|||.|. .|+.++... ++++|+.+|.++++++.+++|+++. |+.++++.+|+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~--~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~ 302 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGG--KTAHILELA--PQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDA 302 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCCh--HHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCc
Confidence 455556666666677777899999999998 777776543 2489999999999999999999998 98889999999
Q ss_pred HHHhcCC--CCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC-CCCCC
Q 027409 105 EEVMGEL--KGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN-AFQRS 151 (223)
Q Consensus 105 ~evL~~L--~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN-vl~~g 151 (223)
.+....+ ++||.||+|+--.. +.++++ +.+.++|||.+|.-- .++..
T Consensus 303 ~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 303 RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 8743322 37999999984221 234565 336779999887443 44433
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=96.75 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.+...|..|.+. .+.++||+||||+|+ .+++++. .. ..+++.+|+|+.+++.|++|++.. ++. +++..|
T Consensus 103 h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~--l~i~~~~--~g-~~~v~giDis~~~l~~A~~n~~~~-~~~~~~~~~~~ 176 (250)
T PRK00517 103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGI--LAIAAAK--LG-AKKVLAVDIDPQAVEAARENAELN-GVELNVYLPQG 176 (250)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCcHHH--HHHHHHH--cC-CCeEEEEECCHHHHHHHHHHHHHc-CCCceEEEccC
Confidence 34566667777654 478899999999998 6666543 22 247999999999999999999998 884 777766
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+. +||+|+.+...+.+..+++.+ +.++|||.++.-....
T Consensus 177 ~~--------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 177 DL--------KADVIVANILANPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CC--------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 53 799999988777778888754 6789999999876543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=99.44 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHH-h-c--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAA-G-W--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~-~-~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+..|++..++...+. . . ++++|||+|||+|+ .+++++.. .++.+++.+|++++.++.|++|.++. |+. |
T Consensus 112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~--iai~la~~--~p~~~V~avDis~~al~~A~~n~~~~-~l~~~i 186 (307)
T PRK11805 112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGC--IAIACAYA--FPDAEVDAVDISPDALAVAEINIERH-GLEDRV 186 (307)
T ss_pred CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCcE
Confidence 456778777776554 2 1 23799999999998 66677643 34689999999999999999999998 885 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeCC----------------------------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDCT----------------------------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa~----------------------------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+++.||+.+.++. +.||+|+.|-- -+.|..++..+ +.|+|||.++++
T Consensus 187 ~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 187 TLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred EEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999887653 37999998720 02245556544 567999999985
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=102.93 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
++....+++..++......+|||+|||.|+ .|+.+|... + +|+|+++|+++++++.+++|+++. |+. ++++.|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~--kt~~la~~~-~-~~~v~a~D~~~~~l~~~~~n~~r~-g~~~~v~~~~~ 296 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGG--KTTHILELA-P-QAQVVALDIHEHRLKRVYENLKRL-GLTIKAETKDG 296 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccH--HHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEecc
Confidence 344566666666676677899999999998 777777543 3 689999999999999999999999 987 555788
Q ss_pred chHHHhc--CCCCccEEEEeCCCcc-------------------------cHHHHH-HhccCCCceEEEEeC
Q 027409 103 QAEEVMG--ELKGVDFLVVDCTSKD-------------------------FARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~--~L~~fDfVFIDa~K~~-------------------------Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|+.+... ....||.||+|+--.. ..++++ +.+.++|||.+|.--
T Consensus 297 d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 297 DGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred ccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8765332 2247999999963221 134555 346779999988764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=91.79 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|++..++..++... ++++|||+|||.|+ .++.++.. .++.+++.+|+++++++.|+++++.. |+. ++++
T Consensus 68 ~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~--~~~~l~~~--~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~ 142 (251)
T TIGR03534 68 IPRPDTEELVEAALERLKKGPLRVLDLGTGSGA--IALALAKE--RPDARVTAVDISPEALAVARKNAARL-GLDNVTFL 142 (251)
T ss_pred cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEE
Confidence 34566777777776655 44599999999998 66677643 24579999999999999999999998 888 9999
Q ss_pred ecchHHHhcCCCCccEEEEeCC-----------C------------------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT-----------S------------------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~-----------K------------------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+.+.++. +.||+|+.+.- + ..|..+++.+ +.|++||.++...
T Consensus 143 ~~d~~~~~~~-~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 143 QSDWFEPLPG-GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ECchhccCcC-CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999875432 57999998521 0 1134555544 5679999999864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=92.13 Aligned_cols=99 Identities=8% Similarity=-0.014 Sum_probs=76.2
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~f 114 (223)
.+...++.+|||||||+|+ .+++||. .+++|+.+|.++++++.|++..++. |+.+++..+|..+ . .+ +.|
T Consensus 25 ~~~~~~~~~vLDiGcG~G~--~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~-~-~~~~~f 95 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGR--NSLYLSL----AGYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINA-A-ALNEDY 95 (195)
T ss_pred HhccCCCCcEEEeCCCCCH--HHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchh-c-cccCCC
Confidence 3455678999999999998 7778864 2679999999999999999999888 8888888888753 1 22 479
Q ss_pred cEEEEe-----CCCcccHHHHHHh-ccCCCceEEE
Q 027409 115 DFLVVD-----CTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 115 DfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+||.- ...++...+++.+ +.|+|||.++
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 999753 2345567788755 6779999743
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=93.87 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
.-.-+.+-.+.....+.+||+||||+|- .++.+++... .|+||-+|+++.|++.|++-..+. |.+ |++++|||.
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd--~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~-~~~~i~fv~~dAe 111 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGD--MALLLAKSVG--TGEVVGLDISESMLEVAREKLKKK-GVQNVEFVVGDAE 111 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccH--HHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhcc-CccceEEEEechh
Confidence 3345555555555578999999999998 8888887654 799999999999999999999998 888 999999998
Q ss_pred HHhcCC--CCccEEEEeC---CCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 106 EVMGEL--KGVDFLVVDC---TSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 106 evL~~L--~~fDfVFIDa---~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
+ || + +.||+|.+.- +-.++...+. ..|.++|||.+++.....+.
T Consensus 112 ~-LP-f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 112 N-LP-FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred h-CC-CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8 56 4 4899999985 3456777785 55889999999998877644
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=100.34 Aligned_cols=113 Identities=22% Similarity=0.154 Sum_probs=87.6
Q ss_pred CcHHHHH-HHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 25 KESGVAE-LLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 25 i~p~~g~-fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
..+++.+ ++..+... .+..+|||+|||+|+ .+++||.. ..+|+++|.++++++.|++|++.. |+. |++
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~--~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~-~~~nv~~ 344 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGT--FTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELN-GIANVEF 344 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCH--HHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHh-CCCceEE
Confidence 4454433 33334433 345799999999998 78888753 358999999999999999999998 988 999
Q ss_pred EecchHHHhcCC----CCccEEEEeCCCcc-cHHHHHHhccCCCceEEEE
Q 027409 100 IVRQAEEVMGEL----KGVDFLVVDCTSKD-FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~L----~~fDfVFIDa~K~~-Y~~~f~~~~~l~~GgvIV~ 144 (223)
+.||+.+.++++ ..||+||+|.-... ..++++.+..++++++|.+
T Consensus 345 ~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyv 394 (431)
T TIGR00479 345 LAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYV 394 (431)
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEE
Confidence 999999987754 26999999987544 8888887766777777654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=95.53 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.+.-.|.+|.+.. +.++||++|||+|+ .+++++. . ..++++.+|+|+.+++.|++|++.. ++. ++++.+
T Consensus 143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~--lai~aa~--~-g~~~V~avDid~~al~~a~~n~~~n-~~~~~~~~~~~ 216 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGI--LSIAALK--L-GAAKVVGIDIDPLAVESARKNAELN-QVSDRLQVKLI 216 (288)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCChhH--HHHHHHH--c-CCCeEEEEECCHHHHHHHHHHHHHc-CCCcceEEEec
Confidence 455555666665543 56899999999998 6666653 2 2358999999999999999999988 876 778887
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+...... ++||+|+.+.-...+.+++..+ +.++|||.++.-.++.
T Consensus 217 ~~~~~~~--~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 217 YLEQPIE--GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ccccccC--CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 7322211 4899999998877788888755 6779999999877653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=97.78 Aligned_cols=100 Identities=17% Similarity=-0.010 Sum_probs=77.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC-CCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE-LKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~-L~~fDf 116 (223)
..+++|||||||+|. .+..|+... +++|+.||+++++++.|+++.++. |+. |+++.+|+.+. +- -+.||+
T Consensus 117 ~~~~~VLDiGCG~G~--~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~-g~~~~v~~~~~D~~~~-~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGG--SSRYLARKY---GANVKGITLSPVQAARANALAAAQ-GLSDKVSFQVADALNQ-PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCH--HHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEcCcccC-CCCCCCccE
Confidence 356899999999998 777776432 679999999999999999999998 875 99999999773 32 247999
Q ss_pred EEEeCCCc---ccHHHHHH-hccCCCceEEEEeC
Q 027409 117 LVVDCTSK---DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K~---~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.-..-. +-..+|.. .+.|+|||.++.-.
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99844332 23567754 47789999887643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=103.63 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=78.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH--HHhh----cCce-EEEEecchHHHhcCC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA--MYDV----VGWV-SEVIVRQAEEVMGEL 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~--~~~a----~G~~-I~li~GdA~evL~~L 111 (223)
..+|++||+||+|.|. .+..++. .+...+|+.+|+|++.++.||++ +.+. +... ++++.|||.+.+.+.
T Consensus 295 ~~~~~rVL~IG~G~G~--~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGL--ALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 370 (521)
T ss_pred CCCCCeEEEEcCCccH--HHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence 3589999999999997 5545442 23337999999999999999994 4332 1223 999999999988876
Q ss_pred -CCccEEEEeCCCc-------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSK-------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~-------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
++||+|++|.... .| .++|+.+ +.|+|||+++..-
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 5899999997421 22 4577766 5679999999853
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=90.60 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=80.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
...|..-+++. ...+.+|||+|||+|. .+++||. .+.+|+.+|.++++++.|+++.+.. ++. |+++.+
T Consensus 17 ~~~~~l~~~l~----~~~~~~vLDiGcG~G~--~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~v~~~~~ 85 (197)
T PRK11207 17 RTHSEVLEAVK----VVKPGKTLDLGCGNGR--NSLYLAA----NGFDVTAWDKNPMSIANLERIKAAE-NLDNLHTAVV 85 (197)
T ss_pred CChHHHHHhcc----cCCCCcEEEECCCCCH--HHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCcceEEec
Confidence 34555555544 4467999999999998 7778874 2568999999999999999999998 888 999999
Q ss_pred chHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEE
Q 027409 103 QAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|..+. +--++||+|+.=. ..+.-..++..+ +.|+|||.++
T Consensus 86 d~~~~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 86 DLNNL-TFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ChhhC-CcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 98663 1114799998532 223456777755 6779999743
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-09 Score=89.06 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
-.+|||+|||+|+ .+++++.. ..++++.+|+++++++.|++|++.. |+.++++.+|+.+.++. +.||+|+.|.
T Consensus 37 ~~~vLDlGcG~G~--~~~~la~~---~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~~-~~fD~Vi~np 109 (223)
T PRK14967 37 GRRVLDLCTGSGA--LAVAAAAA---GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVEF-RPFDVVVSNP 109 (223)
T ss_pred CCeEEEecCCHHH--HHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhccC-CCeeEEEECC
Confidence 3699999999997 66666542 2359999999999999999999998 88899999999886543 4799999983
Q ss_pred C---------------------Cc---ccHHHHHH-hccCCCceEEEE
Q 027409 122 T---------------------SK---DFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 122 ~---------------------K~---~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
- ++ .+..+++. .+.|++||.++.
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 00 13445553 367799999885
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=85.66 Aligned_cols=83 Identities=17% Similarity=-0.012 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHH
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ev 107 (223)
.+|...+...+.++|||+|||.|+ .++.++. . +.+++.+|.+++..+.|++++... +++ ++++.+|+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~--~~~~l~~--~--~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGI--VAIVAAK--N--GKKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFEP 85 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCH--HHHHHHh--h--cceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecccccc
Confidence 334444445788899999999998 6666653 2 579999999999999999999987 776 89999998775
Q ss_pred hcCCCCccEEEEeC
Q 027409 108 MGELKGVDFLVVDC 121 (223)
Q Consensus 108 L~~L~~fDfVFIDa 121 (223)
+.+. .||+|+.+.
T Consensus 86 ~~~~-~~d~vi~n~ 98 (188)
T PRK14968 86 FRGD-KFDVILFNP 98 (188)
T ss_pred cccc-CceEEEECC
Confidence 5432 799998763
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=91.70 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHH
Q 027409 4 VWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRL 83 (223)
Q Consensus 4 ~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~ 83 (223)
.||-+- .+.|.+.-.... .+......+...+.+..++.+|||||||+|+ .+..|+... ++++++.||+++++++
T Consensus 8 fw~~~~-g~~~~~rn~~~~-~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~--~~~~L~~~~--~~~~v~giDiS~~~l~ 81 (204)
T TIGR03587 8 FWAGEF-GKEYIDRNSRQS-LVAAKLAMFARALNRLPKIASILELGANIGM--NLAALKRLL--PFKHIYGVEINEYAVE 81 (204)
T ss_pred HhcCcc-cchhhhccccHH-HHHHHHHHHHHHHHhcCCCCcEEEEecCCCH--HHHHHHHhC--CCCeEEEEECCHHHHH
Confidence 477555 333555432111 3333445555666667788899999999998 666675432 4679999999999999
Q ss_pred HHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEEeCC
Q 027409 84 AYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVVDCT 122 (223)
Q Consensus 84 ~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFIDa~ 122 (223)
.|++++.. ++++.||+.+ +. -+.||+||....
T Consensus 82 ~A~~~~~~-----~~~~~~d~~~--~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 82 KAKAYLPN-----INIIQGSLFD--PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHhhCCC-----CcEEEeeccC--CCCCCCEEEEEECCh
Confidence 99987533 4788899887 32 247999998664
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-09 Score=93.81 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHh---cCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--E
Q 027409 24 IKESGVAELLSAMAAG---WNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I 97 (223)
+-.|++..++...+.. .++ ++|||+|||+|+ .+++++... ++.+++.+|++++.++.|++|.++. |+. +
T Consensus 93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~l~la~~~--~~~~v~avDis~~al~~a~~n~~~~-~~~~~v 167 (284)
T TIGR00536 93 IPRPETEELVEKALASLISQNPILHILDLGTGSGC--IALALAYEF--PNAEVIAVDISPDALAVAEENAEKN-QLEHRV 167 (284)
T ss_pred CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-CCCCcE
Confidence 4467778887776543 233 799999999998 666666432 3579999999999999999999998 886 9
Q ss_pred EEEecchHHHhcCCCCccEEEEeC----------CC------------------cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 98 EVIVRQAEEVMGELKGVDFLVVDC----------TS------------------KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 98 ~li~GdA~evL~~L~~fDfVFIDa----------~K------------------~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+++.||..+.++. .+||+|+.+- .+ ..|..++..+ +.|++||++++.--
T Consensus 168 ~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 168 EFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred EEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 9999999876542 2799999861 00 1355566544 56799999987654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=92.70 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=84.3
Q ss_pred CCcHHHHHHHHH-HH---HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSA-MA---AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~-L~---~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|.. +. ...++.+|||+|||+|. .++.+|. .+++|+.+|.+++.++.|++|.+.. |+. ++
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~--~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~-~l~~v~ 224 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGG--FGLHCAT----PGMQLTGIEISAEAIACAKQSAAEL-GLTNVQ 224 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCH--HHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHc-CCCceE
Confidence 445555444432 22 22357899999999997 7777764 3579999999999999999999999 988 99
Q ss_pred EEecchHHHhcCC-CCccEEEEeCCCccc-HHHHHHhccCCCceEEE
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVDCTSKDF-ARVLRFARFSNKGAVLA 143 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFIDa~K~~Y-~~~f~~~~~l~~GgvIV 143 (223)
++.||+.+.+... +.||+|++|--...+ ....+.+..++++.||.
T Consensus 225 ~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivy 271 (315)
T PRK03522 225 FQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILY 271 (315)
T ss_pred EEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEE
Confidence 9999999877644 479999999765554 34445555555666655
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-09 Score=91.16 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=75.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
...+.++|||||||+|. .+..++.. .++++++.||+++++++.|++++.. ++++.+|+.+..+. ++||+|
T Consensus 28 ~~~~~~~vLDiGcG~G~--~~~~la~~--~~~~~v~gvD~s~~~i~~a~~~~~~-----~~~~~~d~~~~~~~-~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCGPGN--STELLVER--WPAARITGIDSSPAMLAEARSRLPD-----CQFVEADIASWQPP-QALDLI 97 (258)
T ss_pred CCcCCCEEEEEcccCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHhCCC-----CeEEECchhccCCC-CCccEE
Confidence 44677899999999998 77777654 3468999999999999999987533 58899999765432 489999
Q ss_pred EEeCC---CcccHHHHHHh-ccCCCceEEEEe
Q 027409 118 VVDCT---SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~---K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|.... -.+...++..+ +.|+|||.+++.
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98864 23456777654 677999998873
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.9e-09 Score=100.16 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHhc---------------------------CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe
Q 027409 24 IKESGVAELLSAMAAGW---------------------------NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV 76 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---------------------------~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE 76 (223)
|--|||..+....+... ++.+|||||||+|+ .++++|.. -++++++++|
T Consensus 94 IPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~--iai~la~~--~p~~~v~avD 169 (506)
T PRK01544 94 IPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGC--IAISLLCE--LPNANVIATD 169 (506)
T ss_pred cCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhH--HHHHHHHH--CCCCeEEEEE
Confidence 66888888887765432 34689999999998 67777643 2468999999
Q ss_pred CCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC--------------------------CC---cc
Q 027409 77 PDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC--------------------------TS---KD 125 (223)
Q Consensus 77 ~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa--------------------------~K---~~ 125 (223)
++++.++.|++|+++. |+. |+++.||+.+.++. +.||+|+.+- .. +.
T Consensus 170 is~~al~~A~~N~~~~-~l~~~v~~~~~D~~~~~~~-~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 170 ISLDAIEVAKSNAIKY-EVTDRIQIIHSNWFENIEK-QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred CCHHHHHHHHHHHHHc-CCccceeeeecchhhhCcC-CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 9999999999999998 875 99999999876542 4799999742 00 12
Q ss_pred cHHHHHHh-ccCCCceEEEEeC
Q 027409 126 FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 126 Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|..+++.+ +.|++||.++..-
T Consensus 248 ~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEEE
Confidence 44445443 4679999998863
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=85.16 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
+..+|||||||.|. .++.++... +..++++.+|.+++.++.|++++... +.. ++++.+|+.+.....+.||+|+
T Consensus 51 ~~~~vldiG~G~G~--~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGD--LAIALAKAV-GKTGEVVGLDFSEGMLAVGREKLRDL-GLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCH--HHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHhhccc-ccccCeEEEecccccCCCCCCCccEEE
Confidence 55799999999998 676776543 33689999999999999999999886 654 9999999987432235799999
Q ss_pred EeC---CCcccHHHHHHh-ccCCCceEEEE
Q 027409 119 VDC---TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.. ...+...+++.+ ..+++||.+++
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 864 234567777755 56788887754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=85.48 Aligned_cols=110 Identities=8% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
.|.++|.....-+++|+++||+|. .++.++ .+. ..+++.+|.|++.++.+++|++.. |+. ++++.+|+.+.|
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~--lglea~--srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGL--LGEEAL--SRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNSALRAL 112 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcH--HHHHHH--hCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehhHHHHH
Confidence 455555555577899999999996 554443 221 238999999999999999999998 886 999999999888
Q ss_pred cCC---C-CccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEeC
Q 027409 109 GEL---K-GVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L---~-~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~DN 146 (223)
+.+ . .||+||+|- .+..|.+.++++ ..++++|+||+..
T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 754 2 489999997 456677788765 3459999999864
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-09 Score=73.02 Aligned_cols=96 Identities=24% Similarity=0.187 Sum_probs=73.3
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc-CCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG-ELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~-~L~~fDfVFIDa 121 (223)
+|+|+|||.|. .+..++. ....+++.+|.+++..+.+++..+.. +.. ++++.+|..+... ...+||+||.+.
T Consensus 1 ~ildig~G~G~--~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGA--LALALAS---GPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccH--HHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEcc
Confidence 58999999997 5555543 34679999999999999998755544 445 9999999999765 346899999987
Q ss_pred C----CcccHHHHHHh-ccCCCceEEEEe
Q 027409 122 T----SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 122 ~----K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
. .+.+..+++.+ ..+++||.++.-
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5 33457777755 556999998763
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=81.76 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred EEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE-eC-
Q 027409 45 IVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV-DC- 121 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI-Da- 121 (223)
|||+|||+|- .+..++.... .+..+++.+|+++++++.|++++++. +..++++.+|+.+.-..-++||+|+. -+
T Consensus 1 ILDlgcG~G~--~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGR--VTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-GPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSH--HHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-TTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcH--HHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-CCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999997 6666665441 12379999999999999999999988 88899999999874222358999999 43
Q ss_pred ----CCcccHHHHHHh-ccCCCce
Q 027409 122 ----TSKDFARVLRFA-RFSNKGA 140 (223)
Q Consensus 122 ----~K~~Y~~~f~~~-~~l~~Gg 140 (223)
++++-..+|+.+ +.++|||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 344556777654 6678887
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-09 Score=88.09 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=77.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEe
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFID 120 (223)
++|||||||.|. .+..++.. .++++++.+|++++.++.|++++++. |+. |+++.+|+.+. +.-+.||+|+.-
T Consensus 1 ~~vLDiGcG~G~--~~~~la~~--~~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~i~~~~~d~~~~-~~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGS--DLIDLAER--HPHLQLHGYTISPEQAEVGRERIRAL-GLQGRIRIFYRDSAKD-PFPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEecccccC-CCCCCCCEeehH
Confidence 589999999997 66666543 24579999999999999999999998 887 99999998654 211479999863
Q ss_pred C---CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 121 C---TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 121 a---~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
. .-.+...+|+.+ +.|+|||.++.-+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 2 123467888765 677999999887653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=92.62 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~ 110 (223)
.+.-++....+.+||++|||+|. .++.++... .++|+|+.+|.++++++.|++.+++. |.. |+++.|||.+ |+-
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~--~~~~l~~~~-~~~~~v~~vD~s~~ML~~a~~k~~~~-~~~~i~~v~~da~~-lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGD--VTRELARRV-GPNGKVVGVDISPGMLEVARKKLKRE-GLQNIEFVQGDAED-LPF 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSH--HHHHHGGGS-S---EEEEEES-HHHHHHHHHHHHHT-T--SEEEEE-BTTB---S
T ss_pred HHHhccCCCCCCEEEEeCCChHH--HHHHHHHHC-CCccEEEEecCCHHHHHHHHHHHHhh-CCCCeeEEEcCHHH-hcC
Confidence 34444566778899999999998 777776543 45789999999999999999999998 887 9999999988 442
Q ss_pred C-CCccEEEEeCC---CcccHHHHH-HhccCCCceEEEEe
Q 027409 111 L-KGVDFLVVDCT---SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 111 L-~~fDfVFIDa~---K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
- +.||.|++=-. -.+..+.+. ..+.|+|||.+++=
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 2 57999998653 334566675 45788999977653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=89.81 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred HHHHHHH--HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 30 AELLSAM--AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L--~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+.+|.-+ +...+-.+|||+|||+|+ .++.++... + .|+|+++|+++++++.++++.++. -.|+++.||+.+.
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~--~~~~la~~v-~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~ 132 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGT--TVSHVSDIV-E-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKP 132 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCH--HHHHHHHhc-C-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCc
Confidence 4444433 444466799999999998 677777543 3 689999999999999887765543 1278899998752
Q ss_pred h--cCC-CCccEEEEeCC-CcccHHHHHH-hccCCCceEEEEe
Q 027409 108 M--GEL-KGVDFLVVDCT-SKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 108 L--~~L-~~fDfVFIDa~-K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
. ..+ +.||+||.|.. +.++...++. .+.|+|||.++.-
T Consensus 133 ~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred chhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 122 47999999975 3344455654 4678999998874
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=88.97 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=76.1
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcCce-EEEEecchHHHhcCC-C
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVGWV-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G~~-I~li~GdA~evL~~L-~ 112 (223)
+......+|||||||+|+ .++.++... .+.++|+.+|+++++++.|++.... ..+.. |+++.+|+.+ ++-- +
T Consensus 69 ~~~~~~~~VLDlGcGtG~--~~~~la~~~-~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~ 144 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGD--LAFLLSEKV-GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDC 144 (261)
T ss_pred hCCCCCCEEEEECCcCCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCC
Confidence 345567899999999998 666666432 3468999999999999999987542 10333 9999999876 3422 3
Q ss_pred CccEEEEeCCCc---ccHHHHH-HhccCCCceEEEEeCC
Q 027409 113 GVDFLVVDCTSK---DFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa~K~---~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
.||+|++--.-. +-..++. ..+.|+|||.++.-+.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 799999864322 3355665 4478899998766543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=87.08 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.++|.-.+++...+...+.++|||||||.|. .+..++. .+.+++.+|.+++.++.|++++... +..++++.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~--~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~ 103 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGI--LSESMAR----LGADVTGIDASEENIEVARLHALES-GLKIDYRQTT 103 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCH--HHHHHHH----cCCeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecC
Confidence 5566666777777777788999999999997 5555543 2578999999999999999999988 7778999999
Q ss_pred hHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.+..... +.||+|+....- .+...+++.+ +.+++||.+++..
T Consensus 104 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 104 AEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 98876433 589999875321 2335566655 5678999888753
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=92.69 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.+.|..+..+..++...+-.+|||+|||+|. ..+..+. .+++++.+|+|+++++.|++|++.+ |+. ++++.+
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~--~lieaa~----~~~~v~g~Di~~~~~~~a~~nl~~~-g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGG--FLIEAGL----MGAKVIGCDIDWKMVAGARINLEHY-GIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCH--HHHHHHH----hCCeEEEEcCCHHHHHHHHHHHHHh-CCCCCeEEec
Confidence 5677778777777777677799999999996 4444332 2679999999999999999999999 998 899999
Q ss_pred chHHHhcC-CCCccEEEEeCC-------C-----cccHHHHHHh-ccCCCceEEEE
Q 027409 103 QAEEVMGE-LKGVDFLVVDCT-------S-----KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 103 dA~evL~~-L~~fDfVFIDa~-------K-----~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+.+ ++. -+.||.|+.|.- + ..|.++++.+ +.++|||.++.
T Consensus 238 D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred chhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9987 343 247999999931 1 2267777754 67799986654
|
This family is found exclusively in the Archaea. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=91.04 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=76.8
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDf 116 (223)
...++.+|||||||.|. .+++||. .+.+|+.+|.++++++.|+++.++. ++.+++..+|..+. .+ +.||+
T Consensus 117 ~~~~~~~vLDlGcG~G~--~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~--~~~~~fD~ 187 (287)
T PRK12335 117 QTVKPGKALDLGCGQGR--NSLYLAL----LGFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSA--SIQEEYDF 187 (287)
T ss_pred hccCCCCEEEeCCCCCH--HHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhcc--cccCCccE
Confidence 34678899999999998 7777764 2679999999999999999999988 88888988887652 22 47999
Q ss_pred EEEeC-----CCcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDC-----TSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+.=. +.++...+++.+ +.++|||.++
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 98653 345667788755 5679999844
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=83.08 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 26 ESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
.+...+++.-.+.. .+..+|||+|||+|+ .+..++.. +.+++.+|.+++.++.|++++.+. +.. +++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGL--LSEPLARL----GANVTGIDASEENIEVAKLHAKKD-PLLKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCH--HHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHc-CCCceEEE
Confidence 44455666666664 358899999999998 66666532 457999999999999999999988 885 9999
Q ss_pred ecchHHHhcCC-CCccEEEEeC---CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGEL-KGVDFLVVDC---TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L-~~fDfVFIDa---~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+|+.+..... ++||+|+... ...+...++..+ +.+++||.+++.
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999876654 5899999863 234566777755 567889987764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=91.00 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----ce-EEEEecch
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----WV-SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----~~-I~li~GdA 104 (223)
..++-++++. +||+||.||-|-| +++.-... ..+--++|-+|+|++.++.||++|... . .+ ++++.+|+
T Consensus 66 l~h~~~~ah~-~pk~VLiiGgGdG---~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~-~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 66 LAHVPLLAHP-NPKRVLIIGGGDG---GTLREVLK-HLPVERITMVEIDPAVIELARKYLPEP-SGGADDPRVEIIIDDG 139 (282)
T ss_pred HHhchhhhCC-CCCeEEEECCCcc---HHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCc-ccccCCCceEEEeccH
Confidence 3334444443 5589999999988 45544322 233478999999999999999999865 2 34 99999999
Q ss_pred HHHhcCCC-CccEEEEeCCCc-cc------HHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGELK-GVDFLVVDCTSK-DF------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L~-~fDfVFIDa~K~-~Y------~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.|++.. +||.|++|+.-. .. .+||+.| +.|+++||+|+.+
T Consensus 140 ~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred HHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99999875 799999998543 34 7888988 4679999999984
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=83.43 Aligned_cols=112 Identities=17% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
+.+..++......+|||||||+|. .+..++... .+.++++++|.++++++.|+++.... +..++++.+|+.+.--.
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~--~~~~~a~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGN--DARELARRV-GPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCH--HHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCC
Confidence 344445566677899999999997 666665432 34689999999999999999984433 33399999998652111
Q ss_pred CCCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 111 LKGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 111 L~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.||+|+....- .+...+++.+ +.++|||.++.-.
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 2479999987432 3456677654 6679999887644
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-09 Score=76.05 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=67.3
Q ss_pred EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEEeCCC-
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVVDCTS- 123 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFIDa~K- 123 (223)
||||||.|. .+..|+.. ++..++++|+++++++.|++.+... +. +++.+|+.+. +- -+.||+|+.-..=
T Consensus 1 LdiG~G~G~--~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~-~~--~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGR--FAAALAKR---GGASVTGIDISEEMLEQARKRLKNE-GV--SFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSH--HHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTS-TE--EEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCH--HHHHHHhc---cCCEEEEEeCCHHHHHHHHhccccc-Cc--hheeehHHhC-cccccccccccccccee
Confidence 899999998 56566542 5789999999999999999998876 54 5999997775 42 2589999987643
Q ss_pred --cccHHHHHHh-ccCCCceEEEE
Q 027409 124 --KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 124 --~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++..++++.+ +.++|||.+++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 4556777644 77899999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=89.01 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=83.3
Q ss_pred CCcHHHHHHHHHHHH---hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAELLSAMAA---GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~---~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
+-.|++..++..+.. ..++.+|||+|||.|. .++.++... +.++++.+|++++.++.|++|++.. ... +++
T Consensus 88 ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~--~~~~la~~~--~~~~v~~iDis~~~l~~a~~n~~~~-~~~~i~~ 162 (275)
T PRK09328 88 IPRPETEELVEWALEALLLKEPLRVLDLGTGSGA--IALALAKER--PDAEVTAVDISPEALAVARRNAKHG-LGARVEF 162 (275)
T ss_pred eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhC-CCCcEEE
Confidence 345666677776653 3467899999999997 666666443 4689999999999999999999832 223 999
Q ss_pred EecchHHHhcCCCCccEEEEeCC-----------------------------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 100 IVRQAEEVMGELKGVDFLVVDCT-----------------------------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa~-----------------------------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+.+|+.+.++ -+.||+|+.+.- -+.|..+++.+ +.|++||.+++.
T Consensus 163 ~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 163 LQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999866443 147999987520 02245555544 567999999984
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=93.32 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=75.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
...+|||||||+|+ .+..||. .+++|+.||.++++++.|+++.... +.. |+++.+|+.+.-..-+.||+|+
T Consensus 131 ~g~~ILDIGCG~G~--~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~-~~~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGL--LSEPLAR----MGATVTGVDAVDKNVKIARLHADMD-PVTSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCH--HHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhc-CcccceeEEecCHHHhhhccCCCCEEE
Confidence 44689999999998 6767753 3679999999999999999987765 543 9999999976422224799999
Q ss_pred EeCCC---cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 119 VDCTS---KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 119 IDa~K---~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.-..- .+...++..+ +.++|||.++...+
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 75422 2345677655 67799999998753
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=93.62 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=85.6
Q ss_pred CCcHHHHH-HHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAE-LLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
++.+.+.+ ++..++.. ....+|||+|||+|. .+++||.. .++++.+|.++++++.|++|.+.. |+. ++
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~--~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~-~~~~v~ 348 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGN--FTLPLARQ----AAEVVGVEGVEAMVERARENARRN-GLDNVT 348 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCH--HHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHc-CCCceE
Confidence 44555434 33333333 234799999999998 77777643 368999999999999999999998 887 99
Q ss_pred EEecchHHHhcCC----CCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGEL----KGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~L----~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
++.||+.+.+..+ +.||+|++|.-...-.+.++.+..++++++|.+-
T Consensus 349 ~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 349 FYHANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred EEEeChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEE
Confidence 9999999877542 3699999998766666777766555556665543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=93.45 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~ 109 (223)
.|+..+- ......+||||||.|. .++.+|.. .++..++.||+++++++.|.+...+. |+. |.++.|||.+.+.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~--~ll~lA~~--~P~~~~iGIEI~~~~i~~a~~ka~~~-gL~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGR--HLLYQAKN--NPNKLFIGIEIHTPSIEQVLKQIELL-NLKNLLIINYDARLLLE 186 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccH--HHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHc-CCCcEEEEECCHHHhhh
Confidence 4444443 3445689999999998 77777643 45789999999999999999999998 998 9999999998776
Q ss_pred CC--CCccEEEE---eCC-Cccc-----HHHHHHh-ccCCCceEEEE--eC
Q 027409 110 EL--KGVDFLVV---DCT-SKDF-----ARVLRFA-RFSNKGAVLAF--KN 146 (223)
Q Consensus 110 ~L--~~fDfVFI---Da~-K~~Y-----~~~f~~~-~~l~~GgvIV~--DN 146 (223)
.+ +.+|.|++ |-| |... ..+++.+ +.|++||.+.. |+
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 55 37999988 333 2222 5677655 77899996544 55
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=87.66 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+....++.|..++...++.+|||||||+|. .+..|+. .+.+++.+|+++++++.|+++... ++++.+|
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~-----~~~~~~d 93 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGW--MSRYWRE----RGSQVTALDLSPPMLAQARQKDAA-----DHYLAGD 93 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCH--HHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC-----CCEEEcC
Confidence 3455566655555555568899999999997 5555542 357999999999999999887532 4678899
Q ss_pred hHHHhcCC-CCccEEEEeCC---CcccHHHHHH-hccCCCceEEEEeCC
Q 027409 104 AEEVMGEL-KGVDFLVVDCT---SKDFARVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~---K~~Y~~~f~~-~~~l~~GgvIV~DNv 147 (223)
+.+ ++-- +.||+|+.... -.+....+.. .+.++|||.+++-..
T Consensus 94 ~~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 94 IES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 866 3322 47999998653 2344566654 467899999998654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=89.59 Aligned_cols=103 Identities=9% Similarity=-0.076 Sum_probs=76.0
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDf 116 (223)
...+..+|||||||+|. .+..|+.. .+++++.+|+++++++.|++++... ..|+++.+|+.+. +- -+.||+
T Consensus 49 ~l~~~~~VLDiGcG~G~--~a~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~-~~~~~~FD~ 120 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGG--GCKYINEK---YGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKK-DFPENTFDM 120 (263)
T ss_pred CCCCCCEEEEEcCCCCh--hhHHHHhh---cCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccC-CCCCCCeEE
Confidence 44566899999999997 56666532 3679999999999999999987543 2289999998752 21 147999
Q ss_pred EEE-eCC----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 117 LVV-DCT----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 117 VFI-Da~----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+. ++- .++-..+|..+ +.|+|||.+++-...
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 998 542 23556778654 678999999876543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=83.71 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=73.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.++++|||||||.|+ .+..++.. .+..+++.+|.+++.++.|++.+... ++++.+|+.+....-+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G~--~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTGY--LTRALLKR--FPQAEFIALDISAGMLAQAKTKLSEN----VQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCccH--HHHHHHHh--CCCCcEEEEeChHHHHHHHHHhcCCC----CeEEecchhhCCCCCCceeEEEE
Confidence 456899999999998 66667654 24578999999999999998876533 78999999874322247999998
Q ss_pred eCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 120 DCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 120 Da~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
...- .+...+++.+ +.+++||.+++..
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 7532 2445677755 5679999998764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-08 Score=87.96 Aligned_cols=105 Identities=10% Similarity=-0.080 Sum_probs=78.7
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK 112 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~ 112 (223)
..+...+.++||+||||.|. .+++++.. .++++++.+|. |+.++.|++++++. |+. |+++.||+.+. .+.
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~--~~~~~~~~--~p~~~~~~~D~-~~~~~~a~~~~~~~-gl~~rv~~~~~d~~~~--~~~ 214 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGD--ISAAMLKH--FPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKE--SYP 214 (306)
T ss_pred HHcCCCCCCEEEEeCCchhH--HHHHHHHH--CCCCEEEEEec-HHHHHHHHHHHHhC-CccceEEEEecCccCC--CCC
Confidence 33445677899999999997 67777654 35689999997 78999999999999 987 99999999862 234
Q ss_pred CccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 113 GVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
++|.|++-. +.+....+|+.+ +.++|||.+++-+.
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 579987654 444446678655 66788887755443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=81.76 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=76.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..++.+|||+|||.|+ .+..++... +..++++.+|++++..+.+++++. . ...++++.+|+.+....-++||+|+
T Consensus 37 ~~~~~~vldiG~G~G~--~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 37 VFKGQKVLDVACGTGD--LAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred cCCCCeEEEeCCCCCh--hHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCCCCCcEEEEE
Confidence 4478899999999998 666666543 333799999999999999999887 3 3348999999988543234799998
Q ss_pred EeC---CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 119 VDC---TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.. .......+++.+ +.++|||.++.-.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 753 234456677654 5679999887644
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.9e-08 Score=82.37 Aligned_cols=103 Identities=21% Similarity=0.128 Sum_probs=72.0
Q ss_pred HHHHHHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 31 ELLSAMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 31 ~fL~~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
.++..+.. ..+..+|||||||+|+ .+..|+.. +.+++.+|.++++++.|++++... +.. |+++.+| .+
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~--~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~i~~~~~d-~~ 122 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGS--LSIPLARR----GAKVVASDISPQMVEEARERAPEA-GLAGNITFEVGD-LE 122 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhc-CCccCcEEEEcC-ch
Confidence 45555544 4567899999999998 67677532 467999999999999999999998 883 9999999 33
Q ss_pred HhcCCCCccEEEEeCCC-----cccHHHHHHhc-cCCCceEEE
Q 027409 107 VMGELKGVDFLVVDCTS-----KDFARVLRFAR-FSNKGAVLA 143 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K-----~~Y~~~f~~~~-~l~~GgvIV 143 (223)
.. .+.||+|+.-..- ......+..+. .+++|++|.
T Consensus 123 ~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SL--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 22 2579999875432 23344555443 334444444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-08 Score=89.16 Aligned_cols=114 Identities=8% Similarity=-0.022 Sum_probs=85.6
Q ss_pred CCcHHHHHHHH-HHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLS-AMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~-~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|. .+... ...++|||+|||+|. .++.+| . .+.+++.||.|++.++.|++|.+.. |+. ++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~--~~l~la--~--~~~~v~~vE~~~~av~~a~~N~~~~-~~~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGG--FGLHCA--G--PDTQLTGIEIESEAIACAQQSAQML-GLDNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccH--HHHHHh--h--cCCeEEEEECCHHHHHHHHHHHHHc-CCCcEE
Confidence 55666655543 33332 356899999999996 666665 2 2468999999999999999999999 987 99
Q ss_pred EEecchHHHhcCC-CCccEEEEeCCCc-ccHHHHHHhccCCCceEEEE
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVDCTSK-DFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFIDa~K~-~Y~~~f~~~~~l~~GgvIV~ 144 (223)
++.+|+.+.++.. .+||+||+|--.. ...+.++.+..++|+++|.+
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyv 332 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYS 332 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEE
Confidence 9999999887654 4799999997543 45666677655666665544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=86.76 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce---EEEEecchHHHhcCC-C-Cc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV---SEVIVRQAEEVMGEL-K-GV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~li~GdA~evL~~L-~-~f 114 (223)
+|++||-||-|.|. ++-.+. ..++-.+|+.+|+||+..+.|+++|... .+.. ++++.+||.+.|.+. + .|
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell--~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELL--KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHT--TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChh--hhhhhh--hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 79999999999885 332332 2233478999999999999999998863 1322 999999999999986 5 79
Q ss_pred cEEEEeCCCcc------c-HHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKD------F-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~------Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+|++|+--.. | .++|+.+ +.|++||+++..-
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99999986422 2 5788877 4679999999874
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=86.06 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
....+.+|||||||+|. .+..|+.. .++++++.+|+++++++.|++. + ++++.+|+.+. ...+.||+|
T Consensus 26 ~~~~~~~vLDlGcG~G~--~~~~l~~~--~p~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~-~~~~~fD~v 93 (255)
T PRK14103 26 GAERARRVVDLGCGPGN--LTRYLARR--WPGAVIEALDSSPEMVAAARER-----G--VDARTGDVRDW-KPKPDTDVV 93 (255)
T ss_pred CCCCCCEEEEEcCCCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHhc-----C--CcEEEcChhhC-CCCCCceEE
Confidence 34577899999999998 66677643 2468999999999999999752 2 68889999765 333589999
Q ss_pred EEeCCC---cccHHHHHH-hccCCCceEEEEe
Q 027409 118 VVDCTS---KDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K---~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
+....- .+-...+.. .+.|+|||.+++-
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 997642 233556654 4678999999873
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=86.09 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHhcC----CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 26 ESGVAELLSAMAAGWN----AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~----ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.+++..++...+...+ +.+|||+|||+|. .++.++... ++.+++.+|+|++.++.|++|++.. |. +++.
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~--i~l~la~~~--~~~~v~~vDis~~al~~A~~N~~~~-~~--~~~~ 139 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGA--VGAALAAAL--DGIELHAADIDPAAVRCARRNLADA-GG--TVHE 139 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHc-CC--EEEE
Confidence 4555555555544332 3589999999998 676766432 3468999999999999999999987 74 7899
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--Cc---------------------------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SK---------------------------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~---------------------------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+.+.++. + +.||+|+.|.- +. -|.++++.+ +.|++||.++..-
T Consensus 140 ~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 140 GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred eechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999887764 3 47999999841 00 133555433 5679999998764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=88.67 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
+-+|...+.....++|||+|||+|. .+|++ |.+-++.+|+-+|+++++++.|++|++-+ +++ |+++++|..+.
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~--l~L~l--a~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGA--LGLLL--AQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEERIQVIEADIKEF 107 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCH--HHHHH--hccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhceeEehhhHHHh
Confidence 6789999999999999999999996 56555 45545699999999999999999999998 888 99999999998
Q ss_pred hcCC--CCccEEEEe
Q 027409 108 MGEL--KGVDFLVVD 120 (223)
Q Consensus 108 L~~L--~~fDfVFID 120 (223)
.+.. ..||+|+..
T Consensus 108 ~~~~~~~~fD~Ii~N 122 (248)
T COG4123 108 LKALVFASFDLIICN 122 (248)
T ss_pred hhcccccccCEEEeC
Confidence 8876 369999875
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=89.75 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
+++.+.-+|..|-. ....+|||+|||+|+ .+++++. ..++.+|+.+|+++.+++.|++++++. ++..+++.+|.
T Consensus 181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~--ls~~la~--~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~ 254 (342)
T PRK09489 181 LDVGSQLLLSTLTP-HTKGKVLDVGCGAGV--LSAVLAR--HSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNV 254 (342)
T ss_pred CCHHHHHHHHhccc-cCCCeEEEeccCcCH--HHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccc
Confidence 44445555555543 335689999999998 6767764 334679999999999999999999998 88778888888
Q ss_pred HHHhcCCCCccEEEEeC--------CCcccHHHHHHh-ccCCCceEE-EEeCC
Q 027409 105 EEVMGELKGVDFLVVDC--------TSKDFARVLRFA-RFSNKGAVL-AFKNA 147 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa--------~K~~Y~~~f~~~-~~l~~GgvI-V~DNv 147 (223)
.+.++ +.||+|+.+- +.....+++..+ +.|+|||.+ ++-|-
T Consensus 255 ~~~~~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 255 FSDIK--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccC--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 65332 4799999863 122345666644 667777755 34443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=89.88 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
+-.|++..++..+.... +..+|||+|||+|. .++.++.. .++++++.+|+++++++.|++|.++. |..|+++.|
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~--IaiaLA~~--~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~g 307 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGA--VAVTVALE--RPDAFVRASDISPPALETARKNAADL-GARVEFAHG 307 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEc
Confidence 45677888888776544 45799999999997 56666532 34689999999999999999999998 877999999
Q ss_pred chHHH-hcCCCCccEEEEeC
Q 027409 103 QAEEV-MGELKGVDFLVVDC 121 (223)
Q Consensus 103 dA~ev-L~~L~~fDfVFIDa 121 (223)
|..+. ++.-++||+|+.+-
T Consensus 308 Dl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred chhccccccCCCccEEEECC
Confidence 99764 22224799999964
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.6e-08 Score=89.78 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---e-EEEE
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---V-SEVI 100 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---~-I~li 100 (223)
++..+--||..|-. ....+|||+|||+|+ .+++++.. .++.+|+.+|.++..++.|++|++.. +. . ++++
T Consensus 213 LD~GtrllL~~lp~-~~~~~VLDLGCGtGv--i~i~la~~--~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~ 286 (378)
T PRK15001 213 LDIGARFFMQHLPE-NLEGEIVDLGCGNGV--IGLTLLDK--NPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFM 286 (378)
T ss_pred cChHHHHHHHhCCc-ccCCeEEEEeccccH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEE
Confidence 45444445554432 223699999999998 67777643 45789999999999999999999876 53 2 8999
Q ss_pred ecchHHHhcCCCCccEEEEeCC--Cc------ccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT--SK------DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~--K~------~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+|+++-++. ..||+|+.+-- .. .-.++|..+ +.|++||.+.+-
T Consensus 287 ~~D~l~~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 287 INNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EccccccCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999765432 37999999622 11 123556544 567777765543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=91.61 Aligned_cols=112 Identities=11% Similarity=-0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..++..+. .....+|||||||.|. .++.||.. .+++++.+|+++++++.|+++.... +..|+++.+|+.+..-
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~--~~~~la~~---~~~~v~gvDiS~~~l~~A~~~~~~~-~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGG--GDFYMAEN---FDVHVVGIDLSVNMISFALERAIGR-KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCH--HHHHHHHh---cCCEEEEEECCHHHHHHHHHHhhcC-CCceEEEEcCcccCCC
Confidence 44444432 4466799999999997 66667642 2679999999999999999987654 4449999999876321
Q ss_pred CCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 110 ELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.-+.||+|+.-..=. +...+|..+ +.|+|||.+++....
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 114799999864322 346677644 678999998876543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=77.23 Aligned_cols=101 Identities=16% Similarity=-0.005 Sum_probs=72.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
....+|||||||.|. .+..++.. +++++.+|.|+.+++.++++++.. + .++++.||+.+....-..||.||.
T Consensus 12 ~~~~~vLEiG~G~G~--lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~-~-~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 12 RPGDTVLEIGPGKGA--LTEELLER----AARVTAIEIDPRLAPRLREKFAAA-D-NLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred CCcCEEEEECCCccH--HHHHHHhc----CCeEEEEECCHHHHHHHHHHhccC-C-CEEEEECchhcCCccccCCCEEEE
Confidence 344689999999997 77676532 579999999999999999998653 2 389999999986432235999998
Q ss_pred eCCCcccHHHHH-Hhcc--CCCceEEEEeCCC
Q 027409 120 DCTSKDFARVLR-FARF--SNKGAVLAFKNAF 148 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~--l~~GgvIV~DNvl 148 (223)
+--=....+.+. .+.. +.++|+++.-.-.
T Consensus 84 n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 84 NLPYNISTPILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred CCCcccHHHHHHHHHhcCCCcceEEEEEEHHH
Confidence 863222345554 3322 3578888776643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-08 Score=83.07 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH--hcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI--AARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~--A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
+..|.-.-.+..|+--.+|+.|+|+|++.|= |++|+|. +.....|+|++||+|.... .++.++.- ... |++
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GG--Sli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~h-p~~~rI~~ 89 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGG--SLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESH-PMSPRITF 89 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSH--HHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG-----TTEEE
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCc--hHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhc-cccCceEE
Confidence 5678888889999999999999999999984 8888873 3345679999999975532 22333332 222 999
Q ss_pred EecchH--HHhcCC------CCccEEEEeCC--CcccHHHHHHhcc-CCCceEEEEeCCC
Q 027409 100 IVRQAE--EVMGEL------KGVDFLVVDCT--SKDFARVLRFARF-SNKGAVLAFKNAF 148 (223)
Q Consensus 100 i~GdA~--evL~~L------~~fDfVFIDa~--K~~Y~~~f~~~~~-l~~GgvIV~DNvl 148 (223)
++||.. +++.++ ....+|+.|++ .++-..-|+++.+ +.+|+.+|+-+..
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 999985 355443 24679999997 5666777777755 5999998877654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=93.74 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..+...+....+..+|||||||+|. .+..+|.. .++++++.+|+++.+++.|+++.... +..++++.||+.+ ++
T Consensus 407 ~~~k~~i~d~~~g~rVLDIGCGTG~--ls~~LA~~--~P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~d-Lp 480 (677)
T PRK06922 407 ADDKRIILDYIKGDTIVDVGAGGGV--MLDMIEEE--TEDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAIN-LS 480 (677)
T ss_pred HHHHHHHhhhcCCCEEEEeCCCCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHh-Cc
Confidence 4455666777788999999999997 55566543 35789999999999999999998776 7668999999987 44
Q ss_pred C-C--CCccEEEEeC----------------CCcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 110 E-L--KGVDFLVVDC----------------TSKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 110 ~-L--~~fDfVFIDa----------------~K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
. + +.||+|+.-. +.+...+++..+ +.|+|||.++. |.++.
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 3 3 3799998642 123445667644 67788877766 55554
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=84.86 Aligned_cols=112 Identities=16% Similarity=0.063 Sum_probs=82.3
Q ss_pred CCcHHHHH-HHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAE-LLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+.+.+ ++.......+ +.+|||++||+|. .+++|+..+ .+|+.+|.+++.++.|++|++.. |+. +++
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~--~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~-~~~~v~~ 249 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGN--FSLALAQNF----RRVLATEIAKPSVNAAQYNIAAN-NIDNVQI 249 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccH--HHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHc-CCCcEEE
Confidence 34455443 3445445443 4579999999998 777776542 48999999999999999999998 987 999
Q ss_pred EecchHHHhcCC---------C-------CccEEEEeCC-CcccHHHHHHhccCCCceEEEE
Q 027409 100 IVRQAEEVMGEL---------K-------GVDFLVVDCT-SKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~L---------~-------~fDfVFIDa~-K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
+.||+.+.++.. . .||+||+|-- ++...+.++.+.. ++++|.+
T Consensus 250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~--~~~ivYv 309 (353)
T TIGR02143 250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA--YERILYI 309 (353)
T ss_pred EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc--CCcEEEE
Confidence 999999987641 1 3899999985 4446777776633 4555543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=85.98 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCcHHHHH-HHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAE-LLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~-fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+++.+ ++..+....+ ..++||++||+|. .+++++..+ .+|+.+|.+++.++.|++|.+.. |+. +++
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~--~sl~la~~~----~~v~~vE~~~~ai~~a~~N~~~~-~~~~v~~ 258 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGN--FTLALARNF----RRVLATEISKPSVAAAQYNIAAN-GIDNVQI 258 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccH--HHHHHHhhC----CEEEEEECCHHHHHHHHHHHHHh-CCCcEEE
Confidence 44555444 4444444443 2579999999997 777776542 48999999999999999999998 997 999
Q ss_pred EecchHHHhcCC---------------C-CccEEEEeCC-CcccHHHHHHhc
Q 027409 100 IVRQAEEVMGEL---------------K-GVDFLVVDCT-SKDFARVLRFAR 134 (223)
Q Consensus 100 i~GdA~evL~~L---------------~-~fDfVFIDa~-K~~Y~~~f~~~~ 134 (223)
+.|||.+.|+.+ . .||+||+|-- ++.+.+.++.+.
T Consensus 259 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~ 310 (362)
T PRK05031 259 IRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ 310 (362)
T ss_pred EECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 999999987643 1 4899999985 444667777663
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=87.48 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 27 SGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 27 p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
..+.+-+..+++. ....+|||||||.|. .++.+|.. .+++|+.+|+++++++.|+++.+ ++.+++..+|
T Consensus 150 ~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~--~a~~la~~---~g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D 221 (383)
T PRK11705 150 EAQEAKLDLICRKLQLKPGMRVLDIGCGWGG--LARYAAEH---YGVSVVGVTISAEQQKLAQERCA---GLPVEIRLQD 221 (383)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH---CCCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECc
Confidence 3344455555444 345799999999997 66666532 36799999999999999999874 4458888999
Q ss_pred hHHHhcCCCCccEEEEe----C-CCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVD----C-TSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFID----a-~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.+. + +.||.|+.= . ...+|..+|+.+ +.|+|||.++.-.+
T Consensus 222 ~~~l-~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 222 YRDL-N--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhhc-C--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8664 2 479999732 1 346678899866 67799999988654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=84.99 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHH---HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 26 ESGVAELLSAMA---AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~---~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+..+.+-+..++ .+..=.+|||||||-|- .++++|.. .+++|++|.++++..+.|++.++++ |++ |+++
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~--~~~~~a~~---~g~~v~gitlS~~Q~~~a~~~~~~~-gl~~~v~v~ 117 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGG--LAIYAAER---YGCHVTGITLSEEQAEYARERIREA-GLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSH--HHHHHHHH---H--EEEEEES-HHHHHHHHHHHHCS-TSSSTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHH---cCcEEEEEECCHHHHHHHHHHHHhc-CCCCceEEE
Confidence 334444444444 44566789999999985 77777643 2789999999999999999999999 998 9999
Q ss_pred ecchHHHhcCCCCccEEE-EeC----CCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 101 VRQAEEVMGELKGVDFLV-VDC----TSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVF-IDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
.+|..+. +. +||-|+ |.+ .+.+|+.||+.+ +.|+|||.++..-+..
T Consensus 118 ~~D~~~~-~~--~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 118 LQDYRDL-PG--KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred Eeecccc-CC--CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9998763 32 799754 443 357899999977 6789999998876543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=83.68 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.+.|-.-.+++--++. ..-++||+||||.|- .+.+||.. |..||.||.+++.++.|+.+-.+. |+.|++.
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~--Lse~mAr~----Ga~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~ 111 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGI--LSEPLARL----GASVTGIDASEKPIEVAKLHALES-GVNIDYR 111 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccH--hhHHHHHC----CCeeEEecCChHHHHHHHHhhhhc-cccccch
Confidence 4555555666666665 678999999999996 77788742 689999999999999999999999 9999999
Q ss_pred ecchHHHhcCCCCccEEEEeCCCcccH---HHHHHh-ccCCCceEEEEeCC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCTSKDFA---RVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~K~~Y~---~~f~~~-~~l~~GgvIV~DNv 147 (223)
...+.+....-++||+|..==--++|+ .++..| ++++|||+++.--+
T Consensus 112 ~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 112 QATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 999988776546899999865555552 344544 67799999987665
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=82.62 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=66.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
+..+|||||||+|+ .+..++...... +..++.+|+++++++.|++.+.. ++++.+|+.+ ++- -+.||+|+
T Consensus 85 ~~~~vLDiGcG~G~--~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~-----~~~~~~d~~~-lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGY--YTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ-----VTFCVASSHR-LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCH--HHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC-----CeEEEeeccc-CCCcCCceeEEE
Confidence 45789999999998 676776544332 24899999999999999865322 6888999876 342 24799998
Q ss_pred EeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 119 VDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
.--.+..+. +..+.|+|||.++.-
T Consensus 157 ~~~~~~~~~---e~~rvLkpgG~li~~ 180 (272)
T PRK11088 157 RIYAPCKAE---ELARVVKPGGIVITV 180 (272)
T ss_pred EecCCCCHH---HHHhhccCCCEEEEE
Confidence 644433322 234677899988863
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=77.81 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=70.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++|||||||+|. .+.+++. . +.+|+.+|+++++++.|++++... +.. ++++.+|+.+. + +.||+
T Consensus 53 ~~~~~~vLDiGcG~G~--~~~~la~--~--~~~v~gvD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~-~--~~fD~ 122 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGL--LSIELAK--R--GAIVKAVDISEQMVQMARNRAQGR-DVAGNVEFEVNDLLSL-C--GEFDI 122 (219)
T ss_pred CCCCCEEEEEeCCCCH--HHHHHHH--C--CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChhhC-C--CCcCE
Confidence 4568999999999998 6667653 2 468999999999999999999887 763 99999998764 3 67999
Q ss_pred EEE-eCC----CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 LVV-DCT----SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFI-Da~----K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+. +.- ..+-...+..+ +++++|+++.+.+
T Consensus 123 ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 123 VVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred EEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 875 321 11112334433 4456666666543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=81.96 Aligned_cols=103 Identities=16% Similarity=-0.056 Sum_probs=74.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCceEEEEecchHHHhcCCC-----Cc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWVSEVIVRQAEEVMGELK-----GV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~I~li~GdA~evL~~L~-----~f 114 (223)
.+.+|||+|||+|. -|..|+.+.. .+.+++.||+++++++.|++.+... -++.|+.+.||..+.++-+. ..
T Consensus 63 ~~~~iLELGcGtG~--~t~~Ll~~l~-~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSR--KTRLLLDALR-QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcch--hHHHHHHhhc-cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 45899999999998 7777776543 2578999999999999999998875 13448889999876543332 34
Q ss_pred cEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.++|.+..-.+ -..+|..+ ..|+|||.++.+-
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 56777764333 34567655 5679999887544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=87.41 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHH--HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 25 KESGVAELLSAMA--AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
|+.....+...++ ......+||++.+|-|- -|+.+|. .+.+.|.|++.|+++.+++..++|++++ |+. |.+..
T Consensus 95 vQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGg--KTt~la~-~l~~~g~lvA~D~~~~R~~~L~~nl~r~-G~~nv~v~~ 170 (470)
T PRK11933 95 IQEASSMLPVAALFADDNAPQRVLDMAAAPGS--KTTQIAA-LMNNQGAIVANEYSASRVKVLHANISRC-GVSNVALTH 170 (470)
T ss_pred EECHHHHHHHHHhccCCCCCCEEEEeCCCccH--HHHHHHH-HcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEe
Confidence 3444555555444 44566899999999985 6667764 4556789999999999999999999999 999 99999
Q ss_pred cchHHHhcCC-CCccEEEEeCCCccc-------------------------HHHHH-HhccCCCceEEEEeC
Q 027409 102 RQAEEVMGEL-KGVDFLVVDCTSKDF-------------------------ARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFIDa~K~~Y-------------------------~~~f~-~~~~l~~GgvIV~DN 146 (223)
.|+.+.-+.+ ..||.|++||--+.- .+.++ ++..++|||+||.--
T Consensus 171 ~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 171 FDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9998754444 379999999864311 33444 346779999997654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=88.34 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=83.9
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhc
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMG 109 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~ 109 (223)
.++....+=|+||-+=|.||- .|+..|.+ |+ .+|++|.+...++.|++|++-. |+. ++++.|||.+.|.
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGg--fSv~Aa~g----GA~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGG--FSVHAALG----GASEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred HHHhhhccCCeEEEecccCcH--HHHHHHhc----CCCceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHH
Confidence 345555567999999999985 66665433 45 8999999999999999999999 886 9999999999999
Q ss_pred CC----CCccEEEEeCC------------CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 110 EL----KGVDFLVVDCT------------SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 110 ~L----~~fDfVFIDa~------------K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+ ..||+|++|-- ...|.+....+ ++|+|||++++=+--
T Consensus 283 ~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 283 KAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 87 27999999932 23455555533 677888888776643
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-07 Score=82.27 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=73.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~evL~~L~~fDfV 117 (223)
...++|||||||.|| .++.|+.. . ..+|+.||.++.++..++..-+.. +. .|+++.+|+.+. +..+.||+|
T Consensus 121 l~g~~VLDIGCG~G~--~~~~la~~--g-~~~V~GiD~S~~~l~q~~a~~~~~-~~~~~i~~~~~d~e~l-p~~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGY--HMWRMLGA--G-AKLVVGIDPSQLFLCQFEAVRKLL-GNDQRAHLLPLGIEQL-PALKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcH--HHHHHHHc--C-CCEEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEeCCHHHC-CCcCCcCEE
Confidence 456899999999998 77677643 1 247999999998876554432222 32 399999998764 444579999
Q ss_pred EEeCC---CcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 118 VVDCT---SKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 118 FIDa~---K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|.=+. ......+|..+ +.|+|||.+|.+.+...+
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 97432 23346677644 677999999998765444
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=82.88 Aligned_cols=88 Identities=20% Similarity=0.114 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~ 101 (223)
.++|.+.+.+-..+......+|||||||.|. .|..++.. .++++.+|+|+++++.++++++.. +. . ++++.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~--LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~~-~~~~~v~ii~ 91 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGN--LTEKLLQL----AKKVIAIEIDPRMVAELKKRFQNS-PLASKLEVIE 91 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHH--HHHHHHHh----CCcEEEEECCHHHHHHHHHHHHhc-CCCCcEEEEE
Confidence 5778777777666666677899999999998 67676643 468999999999999999999987 74 3 99999
Q ss_pred cchHHHhcCCCCccEEEEe
Q 027409 102 RQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFID 120 (223)
||+++. .+..||.|+.+
T Consensus 92 ~Dal~~--~~~~~d~VvaN 108 (294)
T PTZ00338 92 GDALKT--EFPYFDVCVAN 108 (294)
T ss_pred CCHhhh--cccccCEEEec
Confidence 999984 24578988854
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-07 Score=83.59 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=79.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
.+|||++||+|. .+|.+|.... ..+|+.+|.|++.++.+++|++.. |+. ++++.+||.+.|..-+.||+|++|.
T Consensus 59 ~~vLDl~aGsG~--~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N-~~~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGI--RGIRYALETG--VEKVTLNDINPDAVELIKKNLELN-GLENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccH--HHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 489999999998 7877765422 248999999999999999999998 888 8999999999886434699999997
Q ss_pred CCcccHHHHHH-hccCCCceEEEEe
Q 027409 122 TSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 122 ~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
- +.=.++++. +..+++||+|-+-
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 3 444677775 6777889998774
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-07 Score=77.15 Aligned_cols=110 Identities=13% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHHHHHHHHh-cCCCeEEEEccCcchHHHHH-HHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch
Q 027409 30 AELLSAMAAG-WNAKLIVEAWTHGGPITTSI-GLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl-~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA 104 (223)
..+.++|-.. ..-.++|++=+|+|. .++ +|. .| .+++.+|.|++.+...++|++.. |.+ ++++.+|+
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGa--lGlEALS-----RGA~~v~fVE~~~~a~~~i~~N~~~l-~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGA--LGLEALS-----RGAKSVVFVEKNRKAIKIIKKNLEKL-GLEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSH--HHHHHHH-----TT-SEEEEEES-HHHHHHHHHHHHHH-T-GGGEEEEESSH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCc--cHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHHh-CCCcceeeeccCH
Confidence 5677777777 888999999888885 444 222 23 48999999999999999999999 887 99999999
Q ss_pred HHHhcCC----CCccEEEEeC--CCcc-cHHHHHHh---ccCCCceEEEEeCC
Q 027409 105 EEVMGEL----KGVDFLVVDC--TSKD-FARVLRFA---RFSNKGAVLAFKNA 147 (223)
Q Consensus 105 ~evL~~L----~~fDfVFIDa--~K~~-Y~~~f~~~---~~l~~GgvIV~DNv 147 (223)
...|.++ .+||+||+|- .+.. |.+.++.+ ..++++|+||+..-
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 9988765 4899999996 3444 47788765 34599999998653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-08 Score=74.11 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=56.9
Q ss_pred EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCC
Q 027409 46 VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCT 122 (223)
Q Consensus 46 LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~ 122 (223)
||||||+|. .+.+++... ++++++.+|+++.+++.|++.+.+. +.. ++.+..+..+..... +.||+|+.=.-
T Consensus 1 LdiGcG~G~--~~~~l~~~~--~~~~~~~~D~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGR--LLRALLEEL--PDARYTGVDISPSMLERARERLAEL-GNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS---TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHC-T---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhc-CCcceeEEEeecCChhhcccccccceehhhhh
Confidence 799999997 565665443 5789999999999999999999998 655 555666665555443 48999987642
Q ss_pred C---cccHHHHHHh-ccCCCceEE
Q 027409 123 S---KDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 123 K---~~Y~~~f~~~-~~l~~GgvI 142 (223)
= ++-..+++.+ +.++|||++
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 2 3335566655 567999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-07 Score=76.94 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=56.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC--C-ccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK--G-VDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~--~-fDfV 117 (223)
+.|+++-||.|- -+|.+|.. ..+|++||+||++++.|+.|.+-+ |++ |+++.||+.+.++++. . ||+|
T Consensus 1 ~~vlD~fcG~GG--NtIqFA~~----~~~Viaidid~~~~~~a~hNa~vY-Gv~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGG--NTIQFART----FDRVIAIDIDPERLECAKHNAEVY-GVADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSH--HHHHHHHT----T-EEEEEES-HHHHHHHHHHHHHT-T-GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCH--HHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEeCCHHHHHhhccccccccEE
Confidence 468999998885 88899864 358999999999999999999999 987 9999999999998873 3 8999
Q ss_pred EEeC
Q 027409 118 VVDC 121 (223)
Q Consensus 118 FIDa 121 (223)
|+|-
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9996
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=82.21 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHH--HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMA--AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~--~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+-.|++..++..+. ....+++|||||||+|. -++++|.. .+..+|+.+|+|++..+.|++|.++. |+. +.++
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~--iai~la~~--~~~~~V~a~Dis~~Al~~A~~Na~~~-~l~~~~~~ 165 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGA--IAIALAKE--GPDAEVIAVDISPDALALARENAERN-GLVRVLVV 165 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCCcEEEecCChHH--HHHHHHhh--CcCCeEEEEECCHHHHHHHHHHHHHc-CCccEEEE
Confidence 55788888888754 22233379999999997 56666543 34579999999999999999999999 965 6777
Q ss_pred ecchHHHhcCCCCccEEEE
Q 027409 101 VRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFI 119 (223)
.+|..+-++. +||+|+-
T Consensus 166 ~~dlf~~~~~--~fDlIVs 182 (280)
T COG2890 166 QSDLFEPLRG--KFDLIVS 182 (280)
T ss_pred eeecccccCC--ceeEEEe
Confidence 7777776664 7888874
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=75.65 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
+.+..++...++.+|||||||+|. .+..|+.... .++.+|+.+|+++++++.|++..... ++. ++.+++.+ +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~--~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~--~~~~~~~~-l 123 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD--LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVT--FRQAVSDE-L 123 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH--HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCe--EEEEeccc-c
Confidence 344444444678899999999998 6666664332 33569999999999999999987665 554 44444322 2
Q ss_pred cCC-CCccEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEEeCCC
Q 027409 109 GEL-KGVDFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+.- +.||+|+.-..=.+ ...++..+ +.++ | .+++.++.
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~dl~ 168 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHNDLI 168 (232)
T ss_pred cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEeccc
Confidence 222 47999998743222 23456544 4445 4 44444443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=79.83 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++.+.+.+...+...+.++|||||||.|+ .|+.++.. .++++.+|+|+++++.++++++.. + .++++.||
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~-~-~v~ii~~D 83 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA--LTDELAKR----AKKVYAIELDPRLAEFLRDDEIAA-G-NVEIIEGD 83 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHhccC-C-CEEEEEec
Confidence 6788888888888777788999999999998 77777643 468999999999999999988653 2 28999999
Q ss_pred hHHHhcCCCCccEEEE
Q 027409 104 AEEVMGELKGVDFLVV 119 (223)
Q Consensus 104 A~evL~~L~~fDfVFI 119 (223)
+++. + +..||.|+-
T Consensus 84 ~~~~-~-~~~~d~Vv~ 97 (258)
T PRK14896 84 ALKV-D-LPEFNKVVS 97 (258)
T ss_pred cccC-C-chhceEEEE
Confidence 9874 2 345787764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-07 Score=84.53 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH-
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV- 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev- 107 (223)
..++..+ ...+.++|||||||+|. .+..|+.. .++++.||.++++++.+++.-. ... ++++.+|+.+.
T Consensus 27 ~~il~~l-~~~~~~~vLDlGcG~G~--~~~~la~~----~~~v~giD~s~~~l~~a~~~~~---~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 27 PEILSLL-PPYEGKSVLELGAGIGR--FTGELAKK----AGQVIALDFIESVIKKNESING---HYKNVKFMCADVTSPD 96 (475)
T ss_pred hHHHhhc-CccCCCEEEEeCCCcCH--HHHHHHhh----CCEEEEEeCCHHHHHHHHHHhc---cCCceEEEEecccccc
Confidence 3344433 33456799999999998 77777642 4689999999999988765221 123 89999999643
Q ss_pred hcCC-CCccEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 108 MGEL-KGVDFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 108 L~~L-~~fDfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
++-- +.||+|+....-.. ..++++.+ +.++|||+++. ||.+.
T Consensus 97 ~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 97 LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 3322 47999999763221 24566544 66789998776 55553
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=80.29 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=71.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcC-C----CCcEEEEEeCCchHHHHHHHHHH------------------hhcC---
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAAR-H----TCARHVCIVPDERSRLAYVKAMY------------------DVVG--- 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~-~----~~g~i~TIE~d~e~~~~Ar~~~~------------------~a~G--- 94 (223)
++-+|+++|||+|--++||++..+.. + .+.+|+.+|+|+++++.|++... +.-|
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996555666544321 1 25799999999999999998531 0000
Q ss_pred ----ce--EEEEecchHHHhcCCCCccEEEEeCCCccc------HHHHHHh-ccCCCceEEEEeC
Q 027409 95 ----WV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDF------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 95 ----~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y------~~~f~~~-~~l~~GgvIV~DN 146 (223)
+. |+|..+|..+.-...++||+||.- +--.| .+.+..+ +.|+|||.++.-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr-nvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCR-NVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEec-hhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 11 899999998743334589999973 12122 3455533 6779999998744
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-07 Score=81.60 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 26 ESGVAELLSAMAAGWNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
.|.|.--|.+|-+...+ ++||+||||+|. .+|+-++ .. -.+|+.+|+||...+.|++|.+.- |++ +++.
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGI--LaiaA~k--lG-A~~v~a~DiDp~Av~~a~~N~~~N-~~~~~~~v~-- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGI--LAIAAAK--LG-AKKVVAIDIDPLAVEAARENAELN-GVEDRIEVS-- 216 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSH--HHHHHHH--TT-BSEEEEEESSCHHHHHHHHHHHHT-T-TTCEEES--
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHH--HHHHHHH--cC-CCeEEEecCCHHHHHHHHHHHHHc-CCCeeEEEE--
Confidence 45567777888777654 799999999997 6655443 21 248999999999999999999998 887 5543
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
...+... .+||+|+-.--.+--..+.+.+ ..++|||.+|.--++...
T Consensus 217 ~~~~~~~--~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~ 264 (295)
T PF06325_consen 217 LSEDLVE--GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ 264 (295)
T ss_dssp CTSCTCC--S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred Eeccccc--ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence 2122211 5899999777665556666544 456999999987776544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=79.35 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH--hcC-CCCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV--MGE-LKGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev--L~~-L~~fDfVF 118 (223)
-.+||++||++|+ .+..+|... .+.|+|+++|.++++.+...+..++. ..|.++.+||..- +.. ++.||+||
T Consensus 133 G~~VLDLGaG~G~--~t~~lAdiV-G~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 133 GSKVLYLGAASGT--TVSHVSDLV-GPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCEEEEeCCcCCH--HHHHHHHHh-CCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 3589999999998 777777543 44689999999976543333322211 1278889998642 222 24799999
Q ss_pred EeCC-CcccHHHHH-HhccCCCceEEEEe
Q 027409 119 VDCT-SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~-K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|.. ..++..+.. +.+.|+|||.+++.
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 9986 334444443 34678999998883
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=75.33 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=68.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC----------------ceEEEEecch
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----------------WVSEVIVRQA 104 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----------------~~I~li~GdA 104 (223)
...+||++|||.|+ -++|||. .|-.||.+|+++..++.|.+ ++ | ..|+++.||.
T Consensus 34 ~~~rvLd~GCG~G~--da~~LA~----~G~~V~gvD~S~~Ai~~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 34 AGARVFVPLCGKSL--DLAWLAE----QGHRVLGVELSEIAVEQFFA---EN-GLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CCCeEEEeCCCchh--HHHHHHh----CCCeEEEEeCCHHHHHHHHH---Hc-CCCcceeccccceeeecCceEEEEccC
Confidence 44699999999998 8889873 25689999999998887532 22 2 2389999999
Q ss_pred HHHhcC-CCCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGE-LKGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~-L~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.-.. .+.||+||=- -.++.-.+|++.+ +.|+|||+++.--
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 885443 2468887522 2345567788866 6779999655443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=79.85 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=83.0
Q ss_pred HHHHHHhcCC---CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 33 LSAMAAGWNA---KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 33 L~~L~~~~~a---k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
++.+....+. -+|||.-||+|. -+|-.+.-. +.-.+|+.+|+|++.++.+++|.+.- ++. ++++.+||...|
T Consensus 33 ~~~~~~~~~~~~~~~vLD~faGsG~--rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~N-~~~~~~v~~~Da~~~l 108 (374)
T TIGR00308 33 IQAFDNLYGKECYINIADALSASGI--RAIRYAHEI-EGVREVFANDINPKAVESIKNNVEYN-SVENIEVPNEDAANVL 108 (374)
T ss_pred HHHHHHhhCCcCCCEEEECCCchhH--HHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEchhHHHHH
Confidence 3333444444 389999999997 777665321 11147999999999999999999988 887 999999999999
Q ss_pred cCC-CCccEEEEeCCCcccHHHHHH-hccCCCceEEEEe
Q 027409 109 GEL-KGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
... ..||+|++|. -+...+|++. +..+++||+|.+-
T Consensus 109 ~~~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 109 RYRNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHhCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 876 4799999999 5555688874 4677888877654
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=77.69 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHhc------CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-
Q 027409 24 IKESGVAELLSAMAAGW------NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV- 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~------~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~- 96 (223)
|--||+.++..+.+... +...|||+|||.|. .++.|+.. .+ .++++.||.++..+..|++|.+++ +++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGa--Islsll~~-L~-~~~v~AiD~S~~Ai~La~eN~qr~-~l~g 199 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGA--ISLSLLHG-LP-QCTVTAIDVSKAAIKLAKENAQRL-KLSG 199 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccH--HHHHHHhc-CC-CceEEEEeccHHHHHHHHHHHHHH-hhcC
Confidence 56888888887766543 34479999999997 45555533 33 689999999999999999999999 888
Q ss_pred -EEEE----ecchHHHhcCC-CCccEEE--------------------------EeCCCcccHHHHH---H-hccCCCce
Q 027409 97 -SEVI----VRQAEEVMGEL-KGVDFLV--------------------------VDCTSKDFARVLR---F-ARFSNKGA 140 (223)
Q Consensus 97 -I~li----~GdA~evL~~L-~~fDfVF--------------------------IDa~K~~Y~~~f~---~-~~~l~~Gg 140 (223)
|+++ ++|+.+-.+.+ +++|++. +|+.-+.|..++. . .+.+++||
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 8877 89998877644 3566554 3455555544443 2 26788899
Q ss_pred EEEEeCCC
Q 027409 141 VLAFKNAF 148 (223)
Q Consensus 141 vIV~DNvl 148 (223)
.+...=.-
T Consensus 280 ~~~le~~~ 287 (328)
T KOG2904|consen 280 FEQLELVE 287 (328)
T ss_pred eEEEEecc
Confidence 98887653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=79.67 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=69.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
...+|||||||+|. .++.++... ++++++.+|.++++++.|+++.... .++++.||+.+ ++-- +.||+|+.
T Consensus 113 ~~~~VLDLGcGtG~--~~l~La~~~--~~~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~-lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGF--TTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAED-LPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHh-CCCCCCceeEEEE
Confidence 45699999999997 666665432 3579999999999999999976432 27889999976 3322 47999998
Q ss_pred eCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 120 DCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
-..- .+-...|+.+ +.|+|||.++.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 5421 1234566644 67899998754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-07 Score=82.31 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHH-HHhh-cCceEEEEecchHHHhcCCC--Ccc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKA-MYDV-VGWVSEVIVRQAEEVMGELK--GVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~-~~~a-~G~~I~li~GdA~evL~~L~--~fD 115 (223)
+-.+||+-=||-|| .+|.-+ ..|+ +|+|+|.||.-++.|+-| |.+- +-..|+++.|||.|++++++ .||
T Consensus 134 ~G~rVLDtC~GLGY--tAi~a~----~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGY--TAIEAL----ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cCCEeeeeccCccH--HHHHHH----HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 44789999888888 665533 2366 899999999999999998 6653 11128999999999999994 699
Q ss_pred EEEEeC-----CCcccHH-HH-HHhccCCCceEEE
Q 027409 116 FLVVDC-----TSKDFAR-VL-RFARFSNKGAVLA 143 (223)
Q Consensus 116 fVFIDa-----~K~~Y~~-~f-~~~~~l~~GgvIV 143 (223)
+|.-|- +-+.|.+ |+ ++.+.|++||=+.
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 999993 2377754 44 4668898888764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=76.87 Aligned_cols=119 Identities=10% Similarity=-0.066 Sum_probs=77.5
Q ss_pred CCcHHHHHHHH---HHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-
Q 027409 24 IKESGVAELLS---AMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V- 96 (223)
Q Consensus 24 ii~p~~g~fL~---~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~- 96 (223)
.++++...-+. ++-+ ....++|||||||+|| .++.++. .. ...++.||.++.++..++..=+.. +. .
T Consensus 99 ~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~--~~~~~~~--~g-~~~v~GiDpS~~ml~q~~~~~~~~-~~~~~ 172 (314)
T TIGR00452 99 KIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGY--HMWRMLG--HG-AKSLVGIDPTVLFLCQFEAVRKLL-DNDKR 172 (314)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcH--HHHHHHH--cC-CCEEEEEcCCHHHHHHHHHHHHHh-ccCCC
Confidence 56777655554 2222 2455899999999998 6656543 21 247999999999887643322222 21 2
Q ss_pred EEEEecchHHHhcCCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 97 SEVIVRQAEEVMGELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 97 I~li~GdA~evL~~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.++.++..+ ++....||.||.=+-=. +...+|..+ +.|+|||.+|......
T Consensus 173 v~~~~~~ie~-lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 173 AILEPLGIEQ-LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred eEEEECCHHH-CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 7888888755 45455899999765332 234566644 6779999999876543
|
Known examples to date are restricted to the proteobacteria. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=78.40 Aligned_cols=104 Identities=20% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.|++|+=||+| -+.-|+|+||... .++.++++||+|++..+.|++..+ .. |++ ++|+.+|+.++-.++..||.|
T Consensus 120 ~p~rVaFIGSG-PLPlT~i~la~~~-~~~~~v~~iD~d~~A~~~a~~lv~~~~-~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSG-PLPLTSIVLAKQH-GPGARVHNIDIDPEANELARRLVASDL-GLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--H-TT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ccceEEEEcCC-CcchHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhcc-cccCCeEEEecchhccccccccCCEE
Confidence 46799999998 3456888887432 346789999999999999999999 66 776 999999999876678899999
Q ss_pred EEeCCCc----ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 118 VVDCTSK----DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K~----~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
|+-|--+ .=.+.|+.+ +.+++|++|+.=..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 9998665 888899866 56799999998754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=79.03 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce---EEEEec
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVR 102 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~G 102 (223)
.+.-+++.. ..+-|+||.+=|.+|- .+++.|.+ |+ +++++|.+...++.|++|++-- |++ ++++.+
T Consensus 112 R~nR~~v~~---~~~gkrvLnlFsYTGg--fsv~Aa~g----GA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~ 181 (286)
T PF10672_consen 112 RENRKWVRK---YAKGKRVLNLFSYTGG--FSVAAAAG----GAKEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQG 181 (286)
T ss_dssp HHHHHHHHH---HCTTCEEEEET-TTTH--HHHHHHHT----TESEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES
T ss_pred HhhHHHHHH---HcCCCceEEecCCCCH--HHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEec
Confidence 444444444 4556899999888884 55543321 33 6999999999999999999988 765 999999
Q ss_pred chHHHhcCC---CCccEEEEeCC---------CcccHHHHHH-hccCCCceEEE-EeC
Q 027409 103 QAEEVMGEL---KGVDFLVVDCT---------SKDFARVLRF-ARFSNKGAVLA-FKN 146 (223)
Q Consensus 103 dA~evL~~L---~~fDfVFIDa~---------K~~Y~~~f~~-~~~l~~GgvIV-~DN 146 (223)
|+.+.|.++ .+||+|++|-- ...|.+++.. +++++|||+++ +-|
T Consensus 182 Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 182 DVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999988765 48999999942 2357777764 46678888755 555
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=73.72 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=74.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-------Cce---EEEEecchHHHh
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-------GWV---SEVIVRQAEEVM 108 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-------G~~---I~li~GdA~evL 108 (223)
+..=-+.|+||+|+|| .|-++|+-...+++..+-||.-++..+.+++|+.+.. .++ ..|++||.++.-
T Consensus 80 L~pG~s~LdvGsGSGY--Lt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGY--LTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccH--HHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 5566789999999999 6656664445666656999999999999999998761 122 788999999988
Q ss_pred cCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 109 GELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
++-.+||-|++=|+-.+-++ +++.-|++||=|+.
T Consensus 158 ~e~a~YDaIhvGAaa~~~pq--~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAASELPQ--ELLDQLKPGGRLLI 191 (237)
T ss_pred CccCCcceEEEccCccccHH--HHHHhhccCCeEEE
Confidence 87779999999987554432 22333444444443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=74.83 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=73.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE-EEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE-VIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~-li~GdA~evL~~L--~~fD 115 (223)
..--.+||||||+|- -+-. .-..+..+||+||+||.+-+.|.+-+++. -.. ++ |+.+++.+ |++| ..||
T Consensus 75 ~~K~~vLEvgcGtG~---Nfkf--y~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~-l~~l~d~s~D 147 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGA---NFKF--YPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGEN-LPQLADGSYD 147 (252)
T ss_pred cCccceEEecccCCC---Cccc--ccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhc-CcccccCCee
Confidence 344457999999994 2211 11236789999999999999999999987 444 55 99998765 6777 3799
Q ss_pred EEE---EeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 116 FLV---VDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 116 fVF---IDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
-|. +=|.-++-.+.+.-+ ++|||||.|+.
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 874 447777778888765 67799999875
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-06 Score=71.48 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH--hc----CC-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV--MG----EL- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev--L~----~L- 111 (223)
.+..+|||||||+|. .+..++.. ..+.|+|+.||+++. . ... |+++.||+.+. ++ .+
T Consensus 50 ~~~~~VLDlG~GtG~--~t~~l~~~-~~~~~~V~aVDi~~~-----------~-~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGG--WSQYAVTQ-IGDKGRVIACDILPM-----------D-PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHH-cCCCceEEEEecccc-----------c-CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456789999999997 66666643 345689999999981 1 223 79999998762 32 23
Q ss_pred -CCccEEEEeCCCc--------cc------HHHHHHh-ccCCCceEEEEe
Q 027409 112 -KGVDFLVVDCTSK--------DF------ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 112 -~~fDfVFIDa~K~--------~Y------~~~f~~~-~~l~~GgvIV~D 145 (223)
+.||+|+.|.... ++ ...++.+ +.|+|||.+++-
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3799999997531 11 2344433 677999999985
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-06 Score=75.38 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=67.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-----ce-EEEEecchHHHhcCCCCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG-----WV-SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G-----~~-I~li~GdA~evL~~L~~f 114 (223)
+..+|||||||+|. .++.|+. .+.+|+.+|+++++++.|+++++.. + .. +++..+|..+. . +.|
T Consensus 144 ~~~~VLDlGcGtG~--~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~-~~~~~~~~~~~f~~~Dl~~l-~--~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGS--LAIPLAL----EGAIVSASDISAAMVAEAERRAKEA-LAALPPEVLPKFEANDLESL-S--GKY 213 (315)
T ss_pred CCCEEEEecCCCCH--HHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhc-ccccccccceEEEEcchhhc-C--CCc
Confidence 46799999999997 6777763 2569999999999999999998865 3 22 88999996442 2 479
Q ss_pred cEEEEeCCCccc-----HHHHHHhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDF-----ARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y-----~~~f~~~~~l~~GgvIV~D 145 (223)
|+|+.=..-.+| ...+..+..+.+|+++|..
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 988732111233 2344444445678888865
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-06 Score=73.44 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=82.7
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHHHhcCC-
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEEVMGEL- 111 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~evL~~L- 111 (223)
+.+..-..+.-+||||||.|- +.+.+|. ..|+--.+.||+.......|.+.+.+. |+ .|.++.+||.++|..+
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~--~l~~~A~--~nP~~nfiGiEi~~~~v~~~l~k~~~~-~l~Nlri~~~DA~~~l~~~~ 115 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGE--FLVEMAK--KNPEKNFLGIEIRVPGVAKALKKIKEL-GLKNLRLLCGDAVEVLDYLI 115 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCH--HHHHHHH--HCCCCCEEEEEEehHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHhcC
Confidence 334444445789999999986 6667764 445557999999999999999999999 99 5999999999999887
Q ss_pred -C-C---ccEEEEeCC--Ccc------cHHHHHHh-ccCCCceEEE--EeC
Q 027409 112 -K-G---VDFLVVDCT--SKD------FARVLRFA-RFSNKGAVLA--FKN 146 (223)
Q Consensus 112 -~-~---fDfVFIDa~--K~~------Y~~~f~~~-~~l~~GgvIV--~DN 146 (223)
+ . ..+-|=|-| |.+ |+.+++.+ +.|++||.|- +||
T Consensus 116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2 4 455555776 333 57888866 6789999874 455
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-06 Score=73.04 Aligned_cols=96 Identities=8% Similarity=-0.027 Sum_probs=69.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH-H-HH----------hhcCceEEEEecchHHHh
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK-A-MY----------DVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~-~-~~----------~a~G~~I~li~GdA~evL 108 (223)
+..+||++|||.|. .++|||. .|-.||.+|+++..++.|.. + +. ...+..|++..+|..+.-
T Consensus 37 ~~~rvL~~gCG~G~--da~~LA~----~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSL--DMLWLAE----QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChH--hHHHHHh----CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34699999999998 8889873 36689999999998887632 1 10 110112899999999865
Q ss_pred cC-CCCccEEE-----EeCCCcccHHHHHHh-ccCCCceEE
Q 027409 109 GE-LKGVDFLV-----VDCTSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 109 ~~-L~~fDfVF-----IDa~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
+. +..||+|| +=..++.-.+|+..+ .+|+|||++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeE
Confidence 54 35799988 444566678889866 677999753
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=70.62 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=63.3
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H---h-c
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V---M-G 109 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v---L-~ 109 (223)
+....+-.+|||||||+|. .+..++.. ....++|+.+|+++++ .. ..++++.+|+.+ . + .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~--~~~~l~~~-~~~~~~v~~vDis~~~---------~~--~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGG--WSQVAVEQ-VGGKGRVIAVDLQPMK---------PI--ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCH--HHHHHHHH-hCCCceEEEEeccccc---------cC--CCceEEEeeCCChhHHHHHHH
Confidence 3444667899999999997 55555533 2346799999999864 11 126788888743 1 1 1
Q ss_pred CC--CCccEEEEeCCCc-------cc-------HHHHHH-hccCCCceEEEEe
Q 027409 110 EL--KGVDFLVVDCTSK-------DF-------ARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L--~~fDfVFIDa~K~-------~Y-------~~~f~~-~~~l~~GgvIV~D 145 (223)
.+ +.||+||.|+... ++ ...+.. .+.++|||.++.-
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 22 3699999997421 11 345553 3677999999885
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=72.73 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=72.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC---CCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL---KGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L---~~fDfVFI 119 (223)
.+||||||.|- ..+.+|. ..++-.++.||+....+..|.+...+. |+. +.++.+||.+.|..+ +.+|-|+|
T Consensus 20 l~lEIG~G~G~--~l~~~A~--~~Pd~n~iGiE~~~~~v~~a~~~~~~~-~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGE--FLIELAK--RNPDINFIGIEIRKKRVAKALRKAEKR-GLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSH--HHHHHHH--HSTTSEEEEEES-HHHHHHHHHHHHHH-TTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCH--HHHHHHH--HCCCCCEEEEecchHHHHHHHHHHHhh-cccceEEEEccHHHHHhhcccCCchheEEE
Confidence 89999999997 7777764 345789999999999999999999999 999 999999999988864 36887777
Q ss_pred ---eCC-Ccc-------cHHHHHHh-ccCCCceEE
Q 027409 120 ---DCT-SKD-------FARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 120 ---Da~-K~~-------Y~~~f~~~-~~l~~GgvI 142 (223)
|-+ |.. .+++++.+ +.|++||.|
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 554 222 37788766 567999976
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=76.81 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
-++|..+.+ +.++||.+|||.|. .+|+.++ .. -.+++.+|+||...+.|++|.+.- |+. ++.-.++..+.
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGI--LaIAa~k--LG-A~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGI--LAIAAAK--LG-AKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEV 224 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhH--HHHHHHH--cC-CceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhh
Confidence 455555555 99999999999997 6666543 21 246999999999999999999998 887 66777777776
Q ss_pred hcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 108 MGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
... .+||+|+-.-=-+--..+.+.+ +.++|||.+|.--++-..
T Consensus 225 ~~~-~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 225 PEN-GPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred ccc-CcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 554 5899999776444444555544 566999999988877544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-06 Score=76.26 Aligned_cols=127 Identities=19% Similarity=0.152 Sum_probs=92.8
Q ss_pred cccChhHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHH
Q 027409 3 LVWSPDAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSR 82 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~ 82 (223)
|.|||+ .|++=-....+.. -+ |-..+-.-.|++|+++|||.|- ||=.|+ .+=+++.|+.||.+++|+
T Consensus 1 ~~W~p~----~Yl~F~~eRtRPa----~d-Lla~Vp~~~~~~v~DLGCGpGn--sTelL~--~RwP~A~i~GiDsS~~Ml 67 (257)
T COG4106 1 MDWNPD----QYLQFEDERTRPA----RD-LLARVPLERPRRVVDLGCGPGN--STELLA--RRWPDAVITGIDSSPAML 67 (257)
T ss_pred CCCCHH----HHHHHHHhccCcH----HH-HHhhCCccccceeeecCCCCCH--HHHHHH--HhCCCCeEeeccCCHHHH
Confidence 679986 5665544443321 12 2334556789999999999998 674554 355689999999999999
Q ss_pred HHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC---CcccHHHHH-HhccCCCceEEEE---eCCC
Q 027409 83 LAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT---SKDFARVLR-FARFSNKGAVLAF---KNAF 148 (223)
Q Consensus 83 ~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~---K~~Y~~~f~-~~~~l~~GgvIV~---DNvl 148 (223)
+.|++-+-++ +|..||..+.=+. .+.|++|-.|. -....+.|. ++..|.|||++.+ ||..
T Consensus 68 a~Aa~rlp~~-----~f~~aDl~~w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 68 AKAAQRLPDA-----TFEEADLRTWKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred HHHHHhCCCC-----ceecccHhhcCCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9997665554 8999998887654 47999999984 455666775 5567899999976 6664
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.5e-06 Score=74.15 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=85.9
Q ss_pred CcHHHHHHHHHH---HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 25 KESGVAELLSAM---AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L---~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
.++++-.=+..+ +.+.+=.+|||||||-|- .++.+|. .-|.+|+.+..+++.++.|++-+++. |++ |++
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~--l~~~aA~---~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~v 126 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG--LAIYAAE---EYGVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVEV 126 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH--HHHHHHH---HcCCEEEEeeCCHHHHHHHHHHHHHc-CCCcccEE
Confidence 344443334444 445567899999999885 5556543 33789999999999999999999999 999 999
Q ss_pred EecchHHHhcCCCCccEEE-EeC----CCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 100 IVRQAEEVMGELKGVDFLV-VDC----TSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVF-IDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.-|=.++=. +||=|. |.+ .+++|+.||+.+ .+|+|||.++.--+..
T Consensus 127 ~l~d~rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 127 RLQDYRDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred Eecccccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 8777555432 477554 222 578999999977 5789999998877654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-06 Score=73.64 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
+-.++||+|||+|. .|-.||. + ..+++.+|.++..++.||+-++.. .. |+++.+|--+..+. +.||+|.+=
T Consensus 43 ry~~alEvGCs~G~--lT~~LA~--r--Cd~LlavDis~~Al~~Ar~Rl~~~-~~-V~~~~~dvp~~~P~-~~FDLIV~S 113 (201)
T PF05401_consen 43 RYRRALEVGCSIGV--LTERLAP--R--CDRLLAVDISPRALARARERLAGL-PH-VEWIQADVPEFWPE-GRFDLIVLS 113 (201)
T ss_dssp SEEEEEEE--TTSH--HHHHHGG--G--EEEEEEEES-HHHHHHHHHHTTT--SS-EEEEES-TTT---S-S-EEEEEEE
T ss_pred ccceeEecCCCccH--HHHHHHH--h--hCceEEEeCCHHHHHHHHHhcCCC-CC-eEEEECcCCCCCCC-CCeeEEEEe
Confidence 44899999999998 7767752 2 468999999999999999988765 32 99999997665443 479999886
Q ss_pred CCCcccH-------HHHHHh-ccCCCceEEEEeC
Q 027409 121 CTSKDFA-------RVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 121 a~K~~Y~-------~~f~~~-~~l~~GgvIV~DN 146 (223)
. -..|. .+.+.+ ..|+|||.+|+=.
T Consensus 114 E-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 114 E-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp S--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred h-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 44453 234433 5679999988744
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-06 Score=72.92 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++...+.+...+......+|||||||+|. .|.+++.. +++|+.+|+|+++++.++++++. -.++++.||
T Consensus 25 l~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D 95 (272)
T PRK00274 25 LIDENILDKIVDAAGPQPGDNVLEIGPGLGA--LTEPLLER----AAKVTAVEIDRDLAPILAETFAE---DNLTIIEGD 95 (272)
T ss_pred CCCHHHHHHHHHhcCCCCcCeEEEeCCCccH--HHHHHHHh----CCcEEEEECCHHHHHHHHHhhcc---CceEEEECh
Confidence 5777777666666666777899999999998 77777643 34899999999999999987743 138999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+.+.
T Consensus 96 ~~~~ 99 (272)
T PRK00274 96 ALKV 99 (272)
T ss_pred hhcC
Confidence 9874
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=68.77 Aligned_cols=93 Identities=22% Similarity=0.226 Sum_probs=74.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~fDfVFIDa 121 (223)
++++||||.|+. +|-||.+. ++-+++-+|.+.++...-+....+. |++ ++++.+++.+ +.. ..||+|.-=|
T Consensus 51 ~~lDiGSGaGfP--GipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L-~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFP--GIPLAIAR--PDLQVTLVESVGKKVAFLKEVVREL-GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTT--HHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHH-T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred eEEecCCCCCCh--hHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHh-CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 799999999995 44555432 4678999999999999999999999 999 9999999999 333 4899999999
Q ss_pred CCcccHHHHHHhccC-CCceEEEE
Q 027409 122 TSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 122 ~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
-. ....+++.+.++ ++||.+++
T Consensus 124 v~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 124 VA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp SS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred hc-CHHHHHHHHHHhcCCCCEEEE
Confidence 54 667888888665 99998875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.4e-06 Score=74.49 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
+|+ -+++-+++....--+|+|-|||.|- .+.++|+|..+ -|+++|.|.++.+++.|++.|++- |+. ++++.-|
T Consensus 91 t~D-ia~I~~~L~i~PGsvV~EsGTGSGS--lShaiaraV~p-tGhl~tfefH~~Ra~ka~eeFr~h-gi~~~vt~~hrD 165 (314)
T KOG2915|consen 91 TPD-IAMILSMLEIRPGSVVLESGTGSGS--LSHAIARAVAP-TGHLYTFEFHETRAEKALEEFREH-GIGDNVTVTHRD 165 (314)
T ss_pred ccc-HHHHHHHhcCCCCCEEEecCCCcch--HHHHHHHhhCc-CcceEEEEecHHHHHHHHHHHHHh-CCCcceEEEEee
Confidence 454 4556666778888899999999994 66689988766 489999999999999999999999 887 9998888
Q ss_pred hHHHhcCC--CCccEEEEeC
Q 027409 104 AEEVMGEL--KGVDFLVVDC 121 (223)
Q Consensus 104 A~evL~~L--~~fDfVFIDa 121 (223)
....=-.. ..+|-||+|-
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl 185 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL 185 (314)
T ss_pred cccCCccccccccceEEEcC
Confidence 75421111 2699999996
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=69.88 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++.+++++.+ ......+|||+|||+|- .+++++.... ++..+|+.+|+|+..++.|++|+.+ ++++.+|+
T Consensus 36 P~~iAr~~~i--~~~~~grVLDlG~GSG~--Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----~~~~~~D~ 106 (241)
T PHA03412 36 PIGLARDFTI--DACTSGSVVDLCAGIGG--LSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----ATWINADA 106 (241)
T ss_pred CHHHHHHHHH--hccCCCEEEEccChHHH--HHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----CEEEEcch
Confidence 3334565432 23356899999999996 5656654322 2357999999999999999988654 48888998
Q ss_pred HHHhcCCCCccEEEEeC--------C-Cccc------HHHHH-HhccCCCceEEEEeCCC
Q 027409 105 EEVMGELKGVDFLVVDC--------T-SKDF------ARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa--------~-K~~Y------~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
++... ...||+|+..- + +..| ..+++ +.+++++|++|+=-|++
T Consensus 107 ~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 107 LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 75321 14799998651 1 1112 22444 23666999998888876
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=73.13 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
-++..+--||..|-...+- +||++|||+|+ .+++||.. .+..+||.+|.|...++.||+|++.- +++ .++..+
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gv--lg~~la~~--~p~~~vtmvDvn~~Av~~ar~Nl~~N-~~~~~~v~~s 215 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGV--LGLVLAKK--SPQAKLTLVDVNARAVESARKNLAAN-GVENTEVWAS 215 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCccH--HHHHHHHh--CCCCeEEEEecCHHHHHHHHHhHHHc-CCCccEEEEe
Confidence 4677777788888777666 99999999999 77777653 44789999999999999999999998 888 588999
Q ss_pred chHHHhcCCCCccEEEEe----CCCcccH----HHHHH-hccCCCce-EEEEeC
Q 027409 103 QAEEVMGELKGVDFLVVD----CTSKDFA----RVLRF-ARFSNKGA-VLAFKN 146 (223)
Q Consensus 103 dA~evL~~L~~fDfVFID----a~K~~Y~----~~f~~-~~~l~~Gg-vIV~DN 146 (223)
|..+-+.. .||+|... +.+.--. +++.. ..-|++|| +-|+=|
T Consensus 216 ~~~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 216 NLYEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 98887665 89999875 2333333 66764 45666666 444444
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=63.04 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 29 VAELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 29 ~g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
..+++..+.. ....++|||||||.|. .+..|+. . +.+++.+|++++..+. .. .. ...-++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~--~--~~~~~g~D~~~~~~~~------~~--~~--~~~~~~~~~ 72 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGS--FLRALAK--R--GFEVTGVDISPQMIEK------RN--VV--FDNFDAQDP 72 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSH--HHHHHHH--T--TSEEEEEESSHHHHHH------TT--SE--EEEEECHTH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCH--HHHHHHH--h--CCEEEEEECCHHHHhh------hh--hh--hhhhhhhhh
Confidence 4456666664 7889999999999996 5545543 2 4499999999998877 22 22 111111122
Q ss_pred hcCCCCccEEEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCCC
Q 027409 108 MGELKGVDFLVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
...-+.||+|+.=..=++- ..+++.+ +.++|||.+++.....
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1112489999998655544 4444444 5679999999988653
|
... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-05 Score=65.79 Aligned_cols=111 Identities=15% Similarity=0.250 Sum_probs=84.3
Q ss_pred HHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchH
Q 027409 30 AELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAE 105 (223)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ 105 (223)
..+.++|.. -..=.++|++=.|.|. .++ +|. ..+ .++|-||.|.+.+...++|++.. |.+ .+++.+||.
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGa--LGl---EAl-SRGA~~~~~vE~~~~a~~~l~~N~~~l-~~~~~~~~~~~da~ 103 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGA--LGL---EAL-SRGAARVVFVEKDRKAVKILKENLKAL-GLEGEARVLRNDAL 103 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccH--hHH---HHH-hCCCceEEEEecCHHHHHHHHHHHHHh-CCccceEEEeecHH
Confidence 567777777 3777899999666553 332 232 233 57999999999999999999998 866 999999999
Q ss_pred HHhcCCC---CccEEEEeC--CCcccHHHHHHh-----ccCCCceEEEEeCC
Q 027409 106 EVMGELK---GVDFLVVDC--TSKDFARVLRFA-----RFSNKGAVLAFKNA 147 (223)
Q Consensus 106 evL~~L~---~fDfVFIDa--~K~~Y~~~f~~~-----~~l~~GgvIV~DNv 147 (223)
..|+.+. +||+||+|- +|+.+.....++ ..++++|+||+..-
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9998873 499999996 466775454432 34699999998764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=68.86 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 31 ELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
+++..+... ..+.+|||||||+|. .+..++... +++|+.+|.++++++.|++. . +++.||+.+ ++
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~--~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~---~-----~~~~~d~~~-lp 105 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGE--LSYHFKKVF---KYYVVALDYAENMLKMNLVA---D-----DKVVGSFEA-LP 105 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCH--HHHHHHHhc---CCEEEEECCCHHHHHHHHhc---c-----ceEEechhh-CC
Confidence 445555443 357899999999997 666665432 57999999999999999862 2 456789876 45
Q ss_pred CC-CCccEEEEeCCC---cccHHHHHHh-ccCCCce
Q 027409 110 EL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGA 140 (223)
Q Consensus 110 ~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~Gg 140 (223)
-- +.||.|++=..- .+....+..+ +.++|..
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 32 479999975433 2334555433 5667654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=70.73 Aligned_cols=98 Identities=7% Similarity=-0.088 Sum_probs=71.2
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCC-
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGEL- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L- 111 (223)
..--+||+||=||.|-|- + +-+..+.+. +|+-+|+|++.++.+|++|-.. +... ++++.. +...-
T Consensus 68 ~~h~~pk~VLIiGGGDGg---~--~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~ 137 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLE---L--AHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDI 137 (262)
T ss_pred hhCCCCCeEEEEcCCchH---H--HHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccC
Confidence 344689999999999873 3 334456654 9999999999999999986643 2223 888872 22222
Q ss_pred CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 112 KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.||.|.+|+-- =+++++.+ +.|++||++|+=.
T Consensus 138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence 479999999642 25677766 5679999999843
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.7e-05 Score=70.11 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=76.3
Q ss_pred cccChhHHHHHHHHhhcccC-----------CCCc--HHHHHHHHHHHHhc-----------CCCeEEEEccCcchHHHH
Q 027409 3 LVWSPDAASKAYIDTVKSCE-----------NIKE--SGVAELLSAMAAGW-----------NAKLIVEAWTHGGPITTS 58 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~-----------~ii~--p~~g~fL~~L~~~~-----------~ak~ILEIGT~~Gys~St 58 (223)
+.|+...|.+++=.+|.... ...+ |.=..++..+.-+. ...+|||||||+|.++.
T Consensus 52 idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~- 130 (321)
T PRK11727 52 IDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYP- 130 (321)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHH-
Confidence 45777777777766665533 1222 33456666555552 45899999999886333
Q ss_pred HHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC----CCccEEEEe
Q 027409 59 IGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL----KGVDFLVVD 120 (223)
Q Consensus 59 l~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L----~~fDfVFID 120 (223)
.|+ ....+.+++.+|+|++.++.|++|++..-+++ |+++. .|..+++..+ +.||||+.-
T Consensus 131 -lLa--~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 131 -LIG--VHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred -HHH--hhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeC
Confidence 333 33446799999999999999999999751255 88864 5665555543 379999864
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=81.67 Aligned_cols=91 Identities=14% Similarity=-0.017 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-----
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG----- 94 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G----- 94 (223)
|-.|++-.|...|.... +.++|||+|||+|+ .++.+|... +.++++.+|++++.++.|++|.+.. +
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~--Iai~La~~~--~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~ 171 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGW--ISIAIAEKW--LPSKVYGLDINPRAVKVAWINLYLN-ALDDDG 171 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-Cccccc
Confidence 55788888888854321 24689999999998 676776432 3579999999999999999999874 3
Q ss_pred -----------ce-EEEEecchHHHhcCCC-CccEEEE
Q 027409 95 -----------WV-SEVIVRQAEEVMGELK-GVDFLVV 119 (223)
Q Consensus 95 -----------~~-I~li~GdA~evL~~L~-~fDfVFI 119 (223)
.. |+++.||..+.++... +||+|.-
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVS 209 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVG 209 (1082)
T ss_pred ccccccccccccccEEEEECchhhhccccCCceEEEEE
Confidence 23 9999999998776443 6888874
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-05 Score=71.14 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=74.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfV 117 (223)
-..=|+||+|||+.|| .+.-|+.+ .-..|+.||.++...-..+ .++++.|.+ ..+......|-|+.++.||.|
T Consensus 113 ~L~gk~VLDIGC~nGY--~~frM~~~---GA~~ViGiDP~~lf~~QF~-~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGY--YSFRMLGR---GAKSVIGIDPSPLFYLQFE-AIKHFLGQDPPVFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcH--HHHHHhhc---CCCEEEEECCChHHHHHHH-HHHHHhCCCccEEEcCcchhhccccCCcCEE
Confidence 4566899999999999 66555422 1236999999988665532 233333555 455567888999887799999
Q ss_pred EEeCCCccc---HHHHHHhc-cCCCceEEEEeCCCCCCc
Q 027409 118 VVDCTSKDF---ARVLRFAR-FSNKGAVLAFKNAFQRST 152 (223)
Q Consensus 118 FIDa~K~~Y---~~~f~~~~-~l~~GgvIV~DNvl~~g~ 152 (223)
|.=+---+- ...+..++ .+++||-+|.+.+.-.|.
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 987652222 44454443 569999999999876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=66.20 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
-+++.+ +...++.++|.+|||.|- =+++||.- |=.|+.+|.++..++.+++.-++. +++|+....|-.+.
T Consensus 20 s~v~~a-~~~~~~g~~LDlgcG~GR--NalyLA~~----G~~VtAvD~s~~al~~l~~~a~~~-~l~i~~~~~Dl~~~-- 89 (192)
T PF03848_consen 20 SEVLEA-VPLLKPGKALDLGCGEGR--NALYLASQ----GFDVTAVDISPVALEKLQRLAEEE-GLDIRTRVADLNDF-- 89 (192)
T ss_dssp HHHHHH-CTTS-SSEEEEES-TTSH--HHHHHHHT----T-EEEEEESSHHHHHHHHHHHHHT-T-TEEEEE-BGCCB--
T ss_pred HHHHHH-HhhcCCCcEEEcCCCCcH--HHHHHHHC----CCeEEEEECCHHHHHHHHHHHhhc-CceeEEEEecchhc--
Confidence 344433 567789999999999998 78898742 567999999999999998877777 88899998885442
Q ss_pred CC-CCccEEEEe-----CCCcccHHHHHHhc-cCCCceEEEEe
Q 027409 110 EL-KGVDFLVVD-----CTSKDFARVLRFAR-FSNKGAVLAFK 145 (223)
Q Consensus 110 ~L-~~fDfVFID-----a~K~~Y~~~f~~~~-~l~~GgvIV~D 145 (223)
.+ +.||+|+-. ..++.-+.+++.++ -++|||+.+.-
T Consensus 90 ~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 90 DFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 22 479999753 34556677788775 45999998873
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=70.47 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=56.6
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
......+|||+|||+|. .++.++.. ..+.+|+.+|+++++++.|++++.+ ++++.+|+.+.... ..||+|
T Consensus 61 ~~~~~grVLDLGcGsGi--lsl~la~r--~~~~~V~gVDisp~al~~Ar~n~~~-----v~~v~~D~~e~~~~-~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGR--LSFCMLHR--CKPEKIVCVELNPEFARIGKRLLPE-----AEWITSDVFEFESN-EKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCCCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHhCcC-----CEEEECchhhhccc-CCCcEE
Confidence 33446799999999996 55555432 2246999999999999999987533 58999999986532 479999
Q ss_pred EEeC
Q 027409 118 VVDC 121 (223)
Q Consensus 118 FIDa 121 (223)
+.+.
T Consensus 131 IsNP 134 (279)
T PHA03411 131 ISNP 134 (279)
T ss_pred EEcC
Confidence 9964
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=65.79 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVF 118 (223)
...+|||||||.|. .+..++.. .+..++.||.++++++.|++ . + ++++.+|+.+.++.+ +.||+|+
T Consensus 13 ~~~~iLDiGcG~G~--~~~~l~~~---~~~~~~giD~s~~~i~~a~~----~-~--~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGE--LLALLRDE---KQVRGYGIEIDQDGVLACVA----R-G--VNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCH--HHHHHHhc---cCCcEEEEeCCHHHHHHHHH----c-C--CeEEEEEhhhcccccCCCCcCEEE
Confidence 55799999999997 55566532 24568999999998888754 2 3 578889998766544 3799999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
.-..
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 8653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=67.82 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHH---hcCCCCcEEEEEeC-------C-----------
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAI---AARHTCARHVCIVP-------D----------- 78 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~---A~~~~~g~i~TIE~-------d----------- 78 (223)
.+.+.--..|..+++-. =|-.|+|.|+.-|- |++.++. +...++-+|.-.|. +
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGg--s~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~ 130 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGG--SSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE 130 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSH--HHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCH--HHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence 45666666666666544 57889999999996 5544332 11123345765542 0
Q ss_pred --------chHHHHHHHHHHhhcCce---EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHH---HHhcc-CCCceE
Q 027409 79 --------ERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVL---RFARF-SNKGAV 141 (223)
Q Consensus 79 --------~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f---~~~~~-l~~Ggv 141 (223)
.-..+..++||+++ |+. ++++.|.-.+.|++. +.+-|+.||+| .|..-. +.+.+ +.+||+
T Consensus 131 ~~~~~~~~~~s~e~V~~n~~~~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~GGi 207 (248)
T PF05711_consen 131 FHEYNGYLAVSLEEVRENFARY-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSPGGI 207 (248)
T ss_dssp CCGCCHHCTHHHHHHHHCCCCT-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEE
T ss_pred hhhcccccccCHHHHHHHHHHc-CCCcccEEEECCcchhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCCCeE
Confidence 11467788889988 873 999999999999986 47999999998 675554 44444 599999
Q ss_pred EEEeCCCCCCc
Q 027409 142 LAFKNAFQRST 152 (223)
Q Consensus 142 IV~DNvl~~g~ 152 (223)
||+|+-...|.
T Consensus 208 Ii~DDY~~~gc 218 (248)
T PF05711_consen 208 IIFDDYGHPGC 218 (248)
T ss_dssp EEESSTTTHHH
T ss_pred EEEeCCCChHH
Confidence 99999766443
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=68.57 Aligned_cols=76 Identities=18% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++...+-+-..+...+..+|||||||+|. .|..|+.. ..+++++|.|+++++.+++++... -.++++.+|
T Consensus 12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~v~~iE~d~~~~~~l~~~~~~~--~~v~v~~~D 83 (253)
T TIGR00755 12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGA--LTEPLLKR----AKKVTAIEIDPRLAEILRKLLSLY--ERLEVIEGD 83 (253)
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCH--HHHHHHHh----CCcEEEEECCHHHHHHHHHHhCcC--CcEEEEECc
Confidence 5677776666656666778999999999998 67677643 246999999999999999887532 128999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+.+.
T Consensus 84 ~~~~ 87 (253)
T TIGR00755 84 ALKV 87 (253)
T ss_pred hhcC
Confidence 9873
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=66.90 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=68.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+-..||..-||+|| .+|-+|.- ....+|+++|+||+.++..++|.+.- +++ |+.+.||+.++++ -..||=
T Consensus 99 v~~~e~VlD~faGIG~--f~l~~ak~--~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGP--FSLPIAKH--GKAKRVYAVDLNPDAVEYLKENIRLN-KVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTT--THHHHHHH--T-SSEEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEES-GGG----TT-EEE
T ss_pred CCcceEEEEccCCccH--HHHHHhhh--cCccEEEEecCCHHHHHHHHHHHHHc-CCCCeEEEEcCCHHHhcC-ccccCE
Confidence 3446799999999999 88877642 33578999999999999999999998 888 9999999999988 457999
Q ss_pred EEEeCCCcccHHHHHHh-ccCCCceEE
Q 027409 117 LVVDCTSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
|.++- +..-.+|++.+ ..+++||+|
T Consensus 173 vim~l-p~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNL-PESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE---TSSGGGGHHHHHHHEEEEEEE
T ss_pred EEECC-hHHHHHHHHHHHHHhcCCcEE
Confidence 99987 44445688755 566888887
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.1e-05 Score=63.81 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
...++.+..+-+.+.+. .-+.|+++|||+|. .++..+ ...+ .+|+++|+|++.++.||+|-++. +..|+++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~--La~ga~--~lGa-~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~ 98 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGI--LAIGAA--LLGA-SRVLAVDIDPEALEIARANAEEL-LGDVEFV 98 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCH--HHHHHH--hcCC-cEEEEEecCHHHHHHHHHHHHhh-CCceEEE
Confidence 45666777777777655 45789999999996 544432 3322 58999999999999999999996 6669999
Q ss_pred ecchHHHhcCCCCccEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFID 120 (223)
..|+.+.= .++|-|+++
T Consensus 99 ~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 99 VADVSDFR---GKFDTVIMN 115 (198)
T ss_pred EcchhhcC---CccceEEEC
Confidence 99987642 267777777
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=63.71 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=91.5
Q ss_pred HHHHHHhhcccCC------CCcHH---HHHHHHHHH---HhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC
Q 027409 11 SKAYIDTVKSCEN------IKESG---VAELLSAMA---AGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP 77 (223)
Q Consensus 11 ~~ayl~~l~~~~~------ii~p~---~g~fL~~L~---~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~ 77 (223)
-.+|.+-|..-+. +-+++ +-.||-.++ ...+ ++++++||||.|.. ++=||.+ -++.++|=+|.
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfP--GipLAI~--~p~~~vtLles 99 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFP--GIPLAIA--FPDLKVTLLES 99 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCc--hhhHHHh--ccCCcEEEEcc
Confidence 3488888888664 22321 122332222 2223 79999999999994 5555533 34677999999
Q ss_pred CchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccC-CCceEEEE
Q 027409 78 DERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 78 d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
+.++...=++..++. |++ ++++.|.|.+.=.+..-||+|-.=|- ..-..+++.+.++ ++||.+++
T Consensus 100 ~~Kk~~FL~~~~~eL-~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 100 LGKKIAFLREVKKEL-GLENVEIVHGRAEEFGQEKKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred CchHHHHHHHHHHHh-CCCCeEEehhhHhhcccccccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 999999999999999 999 99999999986554322999999883 4556678877655 88777654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=67.25 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
+=.+++-....=..||..=+|+|| .||-+|....+ +|+++|+||..++..++|++.- +++ |+.+.|||.+++
T Consensus 178 ER~Rva~~v~~GE~V~DmFAGVGp--fsi~~Ak~g~~---~V~A~diNP~A~~~L~eNi~LN-~v~~~v~~i~gD~rev~ 251 (341)
T COG2520 178 ERARVAELVKEGETVLDMFAGVGP--FSIPIAKKGRP---KVYAIDINPDAVEYLKENIRLN-KVEGRVEPILGDAREVA 251 (341)
T ss_pred HHHHHHhhhcCCCEEEEccCCccc--chhhhhhcCCc---eEEEEecCHHHHHHHHHHHHhc-CccceeeEEeccHHHhh
Confidence 333344444445788998899998 88888765432 3999999999999999999988 887 999999999999
Q ss_pred cCCCCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 109 GELKGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
+++..+|=|++-.-+..+. |++ ++..+++||+|-.-......
T Consensus 252 ~~~~~aDrIim~~p~~a~~-fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 252 PELGVADRIIMGLPKSAHE-FLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred hccccCCEEEeCCCCcchh-hHHHHHHHhhcCcEEEEEeccchh
Confidence 9988899999987665444 565 56777889999988876543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=59.61 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC--ce--EEEEec---chH--HH
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG--WV--SEVIVR---QAE--EV 107 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~~--I~li~G---dA~--ev 107 (223)
....+.++|||+|||+|. .+|++|.. ....+|+..|.++ -.+..+.|++.- + .. |++..- +.. +.
T Consensus 41 ~~~~~~~~VLELGaG~Gl--~gi~~a~~--~~~~~Vv~TD~~~-~l~~l~~Ni~~N-~~~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGL--PGIAAAKL--FGAARVVLTDYNE-VLELLRRNIELN-GSLLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGGTTTSEEEETT-TTSH--HHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHH
T ss_pred hhhcCCceEEEECCccch--hHHHHHhc--cCCceEEEeccch-hhHHHHHHHHhc-cccccccccCcEEEecCcccccc
Confidence 346788999999999998 77777654 2357899999988 899999999975 4 22 555554 433 22
Q ss_pred hcCCCCccEEEE-eC--CCcccHHHHHHh-ccC-CCceEEEEeC
Q 027409 108 MGELKGVDFLVV-DC--TSKDFARVLRFA-RFS-NKGAVLAFKN 146 (223)
Q Consensus 108 L~~L~~fDfVFI-Da--~K~~Y~~~f~~~-~~l-~~GgvIV~DN 146 (223)
+. -.+||+|+- |+ +.+.++.++..+ .++ +.+.++++.-
T Consensus 115 ~~-~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 115 LE-PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp HS--SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cc-cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 22 137998874 43 466777777766 345 5555566553
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.1e-05 Score=68.34 Aligned_cols=99 Identities=20% Similarity=0.145 Sum_probs=76.7
Q ss_pred CcHH-HHHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 25 KESG-VAELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 25 i~p~-~g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
++|| .+.++..-+ +..++..|+..=||.|= -++..|+ .+..|++||+||.++..||.|.+-+ |+. |+||
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gG--ntiqfa~----~~~~VisIdiDPikIa~AkhNaeiY-GI~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGG--NTIQFAL----QGPYVIAIDIDPVKIACARHNAEVY-GVPDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCc--hHHHHHH----hCCeEEEEeccHHHHHHHhccceee-cCCceeEEE
Confidence 4554 455554444 44499999999888773 6777763 2678999999999999999999999 999 9999
Q ss_pred ecchHHHhcCCC----CccEEEEeCCCcccHHHHH
Q 027409 101 VRQAEEVMGELK----GVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 101 ~GdA~evL~~L~----~fDfVFIDa~K~~Y~~~f~ 131 (223)
.||-+++...|+ .+|+||.-. .-.|+.|..
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sp-pwggp~y~~ 182 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSP-PWGGPSYLR 182 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCC-CCCCcchhh
Confidence 999999988773 589999875 345666654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=65.44 Aligned_cols=89 Identities=17% Similarity=0.022 Sum_probs=62.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+-+-+-..+......+|||||.|.|- .|..|+.. ..+||.||+|+..++.-++.+... -.++++.||
T Consensus 13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~Ga--LT~~Ll~~----~~~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~D 84 (259)
T COG0030 13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGA--LTEPLLER----AARVTAIEIDRRLAEVLKERFAPY--DNLTVINGD 84 (259)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEECCCCCH--HHHHHHhh----cCeEEEEEeCHHHHHHHHHhcccc--cceEEEeCc
Confidence 4555554444444444555679999999996 77777642 568999999999999888887743 238999999
Q ss_pred hHHH-hcCCCCccEEEEe
Q 027409 104 AEEV-MGELKGVDFLVVD 120 (223)
Q Consensus 104 A~ev-L~~L~~fDfVFID 120 (223)
|+++ ++++..++.|+-.
T Consensus 85 aLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 85 ALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred hhcCcchhhcCCCEEEEc
Confidence 9983 3433356666643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=7e-05 Score=61.03 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+.++||.--....+.++|||||||+|+ +++..++ ..+..|+.||+|++..+.|+++ + ++++.+|-.+-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~---~vA~~L~--~~G~~ViaIDi~~~aV~~a~~~-----~--~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYF---KVAKKLK--ESGFDVIVIDINEKAVEKAKKL-----G--LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCH---HHHHHHH--HCCCEEEEEECCHHHHHHHHHh-----C--CeEEECcCCCC
Confidence 356676665555566889999999985 3333333 2367899999999977766554 2 47788887762
Q ss_pred hcCC-CCccEEEE-eCCCcccHHHHHHhc
Q 027409 108 MGEL-KGVDFLVV-DCTSKDFARVLRFAR 134 (223)
Q Consensus 108 L~~L-~~fDfVFI-Da~K~~Y~~~f~~~~ 134 (223)
=.++ ..+|+|.- -.-.+.-+..+++.+
T Consensus 71 ~~~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred CHHHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 2222 57898873 233333344444443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.2e-05 Score=68.24 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=83.4
Q ss_pred cccChhHHHHHHHHhhcccCC-CCcHHHHHHHHHHHHhcC------CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE
Q 027409 3 LVWSPDAASKAYIDTVKSCEN-IKESGVAELLSAMAAGWN------AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI 75 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~~-ii~p~~g~fL~~L~~~~~------ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI 75 (223)
-.|-.+.-...+|+.+...+- -|.. .+++..-.-.+ =++||+||||+|. .+.-||+ -+..|+.|
T Consensus 47 ~~wwd~~g~~~~Lh~mn~~Rl~fi~d---~~~~~v~~~~p~~k~~~g~~ilDvGCGgGL--LSepLAr----lga~V~GI 117 (282)
T KOG1270|consen 47 FTWWDEEGVRHPLHSMNQTRLPFIRD---DLRNRVNNHAPGSKPLLGMKILDVGCGGGL--LSEPLAR----LGAQVTGI 117 (282)
T ss_pred ccccccccchhhhhhccchhhhHHHH---HHHhcccccCCCccccCCceEEEeccCccc--cchhhHh----hCCeeEee
Confidence 357777777788888776653 1111 11111100111 2569999999998 7878874 36789999
Q ss_pred eCCchHHHHHHHHHHhh-----cCce--EEEEecchHHHhcCCCCccEEEEeCCCccc---HHHHHH-hccCCCceEEEE
Q 027409 76 VPDERSRLAYVKAMYDV-----VGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDF---ARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 76 E~d~e~~~~Ar~~~~~a-----~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y---~~~f~~-~~~l~~GgvIV~ 144 (223)
|..+++++.|++. ++. .+.. +++...++...- +.||-|..==.-++| +++++. +.+++|||.++.
T Consensus 118 D~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 118 DASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred cccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 9999999999999 544 0111 445555544322 259999876556666 445553 467788877766
Q ss_pred eCC
Q 027409 145 KNA 147 (223)
Q Consensus 145 DNv 147 (223)
-.+
T Consensus 194 tti 196 (282)
T KOG1270|consen 194 TTI 196 (282)
T ss_pred eeh
Confidence 543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=57.61 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=45.6
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
.+|+|||+.|+ .+++++.. .++++++++|.+|+.++.++++++.. |+. ++++....
T Consensus 1 ~vlDiGa~~G~--~~~~~~~~--~~~~~v~~~E~~~~~~~~l~~~~~~n-~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGD--TSLYFARK--GAEGRVIAFEPLPDAYEILEENVKLN-NLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccH--HHHHHHHh--CCCCEEEEEecCHHHHHHHHHHHHHc-CCCcEEEEEeee
Confidence 37999999998 78788754 34579999999999999999999987 776 66665443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=60.26 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hc-CC-----CCcEEEEEeCCchHHHHHHHHHHhhcCce
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AA-RH-----TCARHVCIVPDERSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~-~~-----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~ 96 (223)
.+.|..+..|-.|+...+-..+|+-=||+|- .-|--|. +. .. ...+++..|+|++.++.|++|++.+ |+.
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGt--iliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGT--ILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-GVE 87 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSH--HHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T-C
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCH--HHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-ccC
Confidence 5778888888888888777899999999884 2221111 11 11 1224999999999999999999999 988
Q ss_pred --EEEEecchHHHhcCCCCccEEEEeC-----------CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 97 --SEVIVRQAEEVMGELKGVDFLVVDC-----------TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 --I~li~GdA~evL~~L~~fDfVFIDa-----------~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|++..+|+.+.=..-+.+|.|..|- .+..|.++++.+ +.+++..+++..
T Consensus 88 ~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999999998541224799999992 135677777655 446666555544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00055 Score=63.59 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=90.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++....++-..++.-..-.+||+.=.|-| +=|..+|.....+++.|+.+|.++.+...-++|+++. |+. +.++..
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPG--GKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-G~~nv~~~~~ 215 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAPG--GKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-GVRNVIVVNK 215 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCCC--CHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-CCCceEEEec
Confidence 456667777777777777799999966655 3566777654444566799999999999999999999 999 888888
Q ss_pred chHHHhcCC---CCccEEEEeCCCccc-------------------------HHHHH-HhccCCCceEEEEeCC
Q 027409 103 QAEEVMGEL---KGVDFLVVDCTSKDF-------------------------ARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~evL~~L---~~fDfVFIDa~K~~Y-------------------------~~~f~-~~~~l~~GgvIV~DNv 147 (223)
|+....... .+||-|++||-=+.. .++++ +++.++|||+||...-
T Consensus 216 d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 216 DARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 887654433 259999999642221 23333 3367799999999984
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=67.53 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred HHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 30 AELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 30 g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
-+.|.-..+.. +.+.|+.||||.|- .+.+.+.|+. ...-+|+.||.|+......++..++- |++ |+++.
T Consensus 171 ~~al~D~~~~~~~~~~~~vVldVGAGrGp--L~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~w~~~V~vi~ 247 (448)
T PF05185_consen 171 EEALKDRVRKNSYSSKDKVVLDVGAGRGP--LSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-GWGDKVTVIH 247 (448)
T ss_dssp HHHHHHHHTTS-SEETT-EEEEES-TTSH--HHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-TTTTTEEEEE
T ss_pred HHHHHhhhhhccccccceEEEEeCCCccH--HHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-CCCCeEEEEe
Confidence 34444444444 34779999999996 4433333331 22358999999998776666666776 765 99999
Q ss_pred cchHHH-hcCCCCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEV-MGELKGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~ev-L~~L~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||..++ ++ .+.|+|.-- .+-+.-+++++.. +.|+|||+++=..
T Consensus 248 ~d~r~v~lp--ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 248 GDMREVELP--EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp S-TTTSCHS--S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred CcccCCCCC--CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 999884 34 278988643 2455778888876 5679999988554
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=64.53 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=64.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--C--CccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--K--GVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~--~fDf 116 (223)
....+|+.+||.|. -|..++... +++|+|+.+|.|++.++.|++.+++. -.++++.+|..+....+ + ++|.
T Consensus 19 pg~~vlD~TlG~GG--hS~~il~~~-~~~g~VigiD~D~~al~~ak~~L~~~--~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 19 PDGIYVDGTFGGGG--HSRAILERL-GPKGRLIAIDRDPDAIAAAKDRLKPF--GRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred CCCEEEEeCcCChH--HHHHHHHhC-CCCCEEEEEcCCHHHHHHHHHhhccC--CcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 34589999999986 777887653 45799999999999999999988652 13999999999865444 2 7999
Q ss_pred EEEeCCCccc
Q 027409 117 LVVDCTSKDF 126 (223)
Q Consensus 117 VFIDa~K~~Y 126 (223)
|++|-.-..|
T Consensus 94 Il~DLGvSs~ 103 (296)
T PRK00050 94 ILLDLGVSSP 103 (296)
T ss_pred EEECCCcccc
Confidence 9999876665
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00076 Score=64.47 Aligned_cols=116 Identities=21% Similarity=0.089 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
+..+.+.+-|+..+.- .+..++|+.=||+|- .+|+||. ...+|+.+|++++.++.|++|-+.. |+. ++
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~--f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n-~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGT--FGLPLAK----RVKKVHGVEISPEAVEAAQENAAAN-GIDNVE 344 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCCh--hhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHc-CCCcEE
Confidence 5566666666555433 345689999999997 7878762 3568999999999999999999999 999 99
Q ss_pred EEecchHHHhcCC---CCccEEEEeCCCcccH-HHHHHhccC-CCceEEEEeC
Q 027409 99 VIVRQAEEVMGEL---KGVDFLVVDCTSKDFA-RVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 99 li~GdA~evL~~L---~~fDfVFIDa~K~~Y~-~~f~~~~~l-~~GgvIV~DN 146 (223)
|+.|+|.++++.. ..+|.|++|--...-. ++++.+..+ ++.=|-|.=|
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999999876 3799999998755555 788877554 4444444445
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00031 Score=65.00 Aligned_cols=104 Identities=17% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHHH-HhcCC--CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGVAELLSAMA-AGWNA--KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~-~~~~a--k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+.+.+-|...+ ...+. .+|||+=||+|- .|+.||.. ..+|+.||.+++.++.|++|.+.- |+. ++|
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~--fsl~la~~----~~~V~gvE~~~~av~~A~~Na~~N-~i~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGT--FSLPLAKK----AKKVIGVEIVEEAVEDARENAKLN-GIDNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTC--CHHHHHCC----SSEEEEEES-HHHHHHHHHHHHHT-T--SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCH--HHHHHHhh----CCeEEEeeCCHHHHHHHHHHHHHc-CCCcceE
Confidence 66677665555544 34343 379999999997 77777632 468999999999999999999999 999 999
Q ss_pred EecchHHHhcC--------------CC--CccEEEEeCC-CcccHHHHHHhc
Q 027409 100 IVRQAEEVMGE--------------LK--GVDFLVVDCT-SKDFARVLRFAR 134 (223)
Q Consensus 100 i~GdA~evL~~--------------L~--~fDfVFIDa~-K~~Y~~~f~~~~ 134 (223)
+.++|.++... +. .+|.|++|-- ++--....+.+.
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 99999876431 11 5899999975 444455666653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00085 Score=65.12 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=74.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCC--CccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELK--GVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~--~fDf 116 (223)
.+...+||||||.|= +.+.+|. ..++--++.||+.......|.+-..+. |+. +.++.+|+..+...+. .+|-
T Consensus 346 ~~~p~~lEIG~G~G~--~~~~~A~--~~p~~~~iGiE~~~~~~~~~~~~~~~~-~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGE--HFINQAK--MNPDALFIGVEVYLNGVANVLKLAGEQ-NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCceEEEECCCchH--HHHHHHH--hCCCCCEEEEEeeHHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 357899999999986 6666664 456778999999999888888888888 998 9999999866655552 4666
Q ss_pred EEE---eCC--Ccc------cHHHHHHh-ccCCCceEE
Q 027409 117 LVV---DCT--SKD------FARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 117 VFI---Da~--K~~------Y~~~f~~~-~~l~~GgvI 142 (223)
||| |-| |.+ .+++++.+ +.|++||.|
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 665 666 333 27788766 677999965
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=59.88 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=73.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCC----CCcEEEEEeCCchHHHHHHHHHHhhcCce----EEEEecchHHHhcCC-CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARH----TCARHVCIVPDERSRLAYVKAMYDVVGWV----SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~----I~li~GdA~evL~~L-~~ 113 (223)
-++|++++|+|- .|+-+...+.. ++++|+-+|+||+++..+++-=++- ++. +++++|||.+ ||-- +.
T Consensus 102 m~~lDvaGGTGD--iaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~-LpFdd~s 177 (296)
T KOG1540|consen 102 MKVLDVAGGTGD--IAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAED-LPFDDDS 177 (296)
T ss_pred CeEEEecCCcch--hHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCccc-CCCCCCc
Confidence 589999999998 55555554432 3489999999999999999887666 665 8999999976 5621 37
Q ss_pred ccEEEEeCCCccc---HHHH-HHhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDF---ARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y---~~~f-~~~~~l~~GgvIV~ 144 (223)
||..-|--.=.+. .+.+ ++++.|+|||...|
T Consensus 178 ~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred ceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 8888776655555 4444 36689999998774
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0024 Score=56.55 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=93.4
Q ss_pred ccChhHHHHHHHHhhcccC-----C-CC---cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEE
Q 027409 4 VWSPDAASKAYIDTVKSCE-----N-IK---ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVC 74 (223)
Q Consensus 4 ~w~~~~a~~ayl~~l~~~~-----~-ii---~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~T 74 (223)
.|+.+.+.+.|+.+-...- + .+ +.--.+.+...+. .+-.+||+||=|-|.+.+.+. + .++ -+.+-
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQ--e--~~p-~~H~I 129 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQ--E--APP-DEHWI 129 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHh--h--cCC-cceEE
Confidence 3677777777776622111 0 11 1111222222222 678899999999887544333 2 233 36778
Q ss_pred EeCCchHHHHHHHH-HHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHH----hccCCCceEEEEeCC
Q 027409 75 IVPDERSRLAYVKA-MYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRF----ARFSNKGAVLAFKNA 147 (223)
Q Consensus 75 IE~d~e~~~~Ar~~-~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~----~~~l~~GgvIV~DNv 147 (223)
||-+|+-.+.-|+. +.+- ..|-+.+|.-.++|++| +.||=||-|+-.+.|.+..+. .++++|+|+.-.=|.
T Consensus 130 iE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 130 IEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EecCHHHHHHHHhcccccc--cceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 99999987766554 2211 11889999999999998 379999999999999877653 377899999998887
Q ss_pred CCCC
Q 027409 148 FQRS 151 (223)
Q Consensus 148 l~~g 151 (223)
+..+
T Consensus 208 ~~~~ 211 (271)
T KOG1709|consen 208 LGAD 211 (271)
T ss_pred cccc
Confidence 7655
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=58.83 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-----C--c-e-EEEEecchHHHhcCCC-C
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-----G--W-V-SEVIVRQAEEVMGELK-G 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-----G--~-~-I~li~GdA~evL~~L~-~ 113 (223)
+||+.-.|.|- -++-+| .+ |++|+.+|.||..+..-++++++++ + + . ++++.+|+.+.|..+. .
T Consensus 91 ~VLD~TAGlG~--Da~~la--s~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGR--DAFVLA--SV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred EEEECCCCccH--HHHHHH--Hc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 79999888885 554443 22 7899999999999999999999851 2 2 3 9999999999999874 7
Q ss_pred ccEEEEeCC
Q 027409 114 VDFLVVDCT 122 (223)
Q Consensus 114 fDfVFIDa~ 122 (223)
||+||+|--
T Consensus 165 fDVVYlDPM 173 (250)
T PRK10742 165 PQVVYLDPM 173 (250)
T ss_pred CcEEEECCC
Confidence 999999963
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.002 Score=60.08 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHhhcccCC------CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH
Q 027409 14 YIDTVKSCEN------IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK 87 (223)
Q Consensus 14 yl~~l~~~~~------ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~ 87 (223)
.+....+.++ .++|..+.++-.|++..+=.+||+==||||- +.+ +|. --|++++.+|++.++.+-|+.
T Consensus 164 ~~~~r~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGg----iLi-Eag-l~G~~viG~Did~~mv~gak~ 237 (347)
T COG1041 164 AFEKRDPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGG----ILI-EAG-LMGARVIGSDIDERMVRGAKI 237 (347)
T ss_pred HHhhcCcccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccH----HHH-hhh-hcCceEeecchHHHHHhhhhh
Confidence 3445555553 6799999999999999999999997777772 222 222 237899999999999999999
Q ss_pred HHHhhcCce-EEEEec-chHHHhcCCC--CccEEEEeC-------CCc-----ccHHHHHHh-ccCCCceEEEE
Q 027409 88 AMYDVVGWV-SEVIVR-QAEEVMGELK--GVDFLVVDC-------TSK-----DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 88 ~~~~a~G~~-I~li~G-dA~evL~~L~--~fDfVFIDa-------~K~-----~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|++.+ |++ ..+..+ ||.+ |+ |. .+|=|..|- .|. .|.+.|+.+ ..+++||.+|+
T Consensus 238 Nl~~y-~i~~~~~~~~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 238 NLEYY-GIEDYPVLKVLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred hhhhh-CcCceeEEEeccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 99999 988 777777 9987 35 63 499999992 222 378888755 67788885543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=59.52 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.....+-..++.-..-.+||+.-+|-|- =|+.+|. .+...|+|+..|+++++...-++++++. |.. |.+...
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGg--Kt~~la~-~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-g~~~v~~~~~ 143 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGG--KTTHLAE-LMGNKGEIVANDISPKRLKRLKENLKRL-GVFNVIVINA 143 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSH--HHHHHHH-HTTTTSEEEEEESSHHHHHHHHHHHHHT-T-SSEEEEES
T ss_pred EecccccccccccccccccccccccccCCCC--ceeeeee-cccchhHHHHhccCHHHHHHHHHHHHhc-CCceEEEEee
Confidence 4455555666666666666899999888774 5656764 4566799999999999999999999999 999 888889
Q ss_pred chHHHhcCC-C-CccEEEEeCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~ 122 (223)
|+.+..+.. . .||.|++||-
T Consensus 144 D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 144 DARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp HHHHHHHHHHTTTEEEEEEECS
T ss_pred ccccccccccccccchhhcCCC
Confidence 999986654 3 5999999974
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00053 Score=60.68 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=60.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
++++.+.+-+.-.+...+...|||||.|.|. .|-.|+... .+++.||.|++..+.-++.+... -.++++.||
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~--lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D 84 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGA--LTRELLKRG----KRVIAVEIDPDLAKHLKERFASN--PNVEVINGD 84 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSC--CHHHHHHHS----SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCcc--chhhHhccc----CcceeecCcHhHHHHHHHHhhhc--ccceeeecc
Confidence 6788888888888888889999999999998 666776543 68999999999888887766622 238999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
++++
T Consensus 85 ~l~~ 88 (262)
T PF00398_consen 85 FLKW 88 (262)
T ss_dssp TTTS
T ss_pred hhcc
Confidence 9973
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=55.71 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=60.1
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
+.++|+-++|||||.|+. +-.|+... .+.....++|+||+..+..++.-+.- +..++.+.-|-...|.. ++.|.+
T Consensus 40 ~~~~~~i~lEIG~GSGvv--stfL~~~i-~~~~~~latDiNp~A~~~Tl~TA~~n-~~~~~~V~tdl~~~l~~-~~VDvL 114 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVV--STFLASVI-GPQALYLATDINPEALEATLETARCN-RVHIDVVRTDLLSGLRN-ESVDVL 114 (209)
T ss_pred hhcCceeEEEecCCcchH--HHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhc-CCccceeehhHHhhhcc-CCccEE
Confidence 345599999999999994 33555443 35678999999999888888877766 55588888888888876 788877
Q ss_pred EEe
Q 027409 118 VVD 120 (223)
Q Consensus 118 FID 120 (223)
...
T Consensus 115 vfN 117 (209)
T KOG3191|consen 115 VFN 117 (209)
T ss_pred EEC
Confidence 654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0015 Score=57.53 Aligned_cols=102 Identities=8% Similarity=-0.023 Sum_probs=72.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH------------HHhhcCceEEEEecchHHHh
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA------------MYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~------------~~~a~G~~I~li~GdA~evL 108 (223)
+..+||..|||-|+ -.+|||. .|-.|+.+|.++.-++.+.+- ++.+.|..|++..||..+.=
T Consensus 43 ~~~rvLvPgCGkg~--D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 43 DSSVCLIPMCGCSI--DMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCeEEEeCCCChH--HHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34799999999998 7889874 255799999999988877551 11121334999999999842
Q ss_pred c--C-CCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 109 G--E-LKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 ~--~-L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+ . +++||+|+-=+ ..+.=.+|.+.+ .+++|||.++.=.+-
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1 2 35799965433 344557778766 567999988877653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=61.14 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=74.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-hcCCCCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV-MGELKGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev-L~~L~~fD 115 (223)
+.+-|.||.||||+|. .+++-|+|. --+++.+|-+ +.++.|++.++.- |++ |+++.|...|+ || .+..|
T Consensus 58 lf~dK~VlDVGcGtGI--LS~F~akAG---A~~V~aVe~S-~ia~~a~~iv~~N-~~~~ii~vi~gkvEdi~LP-~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGI--LSMFAAKAG---ARKVYAVEAS-SIADFARKIVKDN-GLEDVITVIKGKVEDIELP-VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccH--HHHHHHHhC---cceEEEEech-HHHHHHHHHHHhc-CccceEEEeecceEEEecC-cccee
Confidence 6788999999999997 777777664 2479999986 5679999999998 888 99999999884 55 45788
Q ss_pred EEEEeCCCcccHHHHHH----h-----ccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLRF----A-----RFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~----~-----~~l~~GgvIV~DNv 147 (223)
.|. +.=..|--+++. + +-|++||+|.=|-.
T Consensus 130 iIv--SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 130 IIV--SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred EEe--ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 764 333344444431 1 34699999987663
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=59.52 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=74.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHH--HHhh----cCce-EEEEecchHHHhcC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKA--MYDV----VGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~--~~~a----~G~~-I~li~GdA~evL~~ 110 (223)
..+++++|-+|-|-|- ++-+-.+-| -++|+-+|.||++++.|+.+ +.+- +-.. +.++..||.+.|+.
T Consensus 287 ~~~a~~vLvlGGGDGL-----AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~ 361 (508)
T COG4262 287 VRGARSVLVLGGGDGL-----ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT 361 (508)
T ss_pred ccccceEEEEcCCchH-----HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh
Confidence 3689999999998774 333223334 58999999999999999955 4432 1111 99999999999997
Q ss_pred C-CCccEEEEeCC-Ccc------c-HHHHHHh-ccCCCceEEEEe
Q 027409 111 L-KGVDFLVVDCT-SKD------F-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 111 L-~~fDfVFIDa~-K~~------Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
- +.||+|.+|-- +.+ | .+|+.++ +.++++|+.|+-
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 6 58999999953 222 3 4555555 567999999864
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0014 Score=56.78 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=65.5
Q ss_pred EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeCC
Q 027409 45 IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
|.+|||-=|| ..++|..... --+++..|+++.-.+.|+++++++ |+. |+++.||.++.|+.-+..|.|.|=+-
T Consensus 1 vaDIGtDHgy--Lpi~L~~~~~--~~~~ia~DI~~gpL~~A~~~i~~~-~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGY--LPIYLLKNGK--APKAIAVDINPGPLEKAKENIAKY-GLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTH--HHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHT-T-TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhH--HHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHHc-CCcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 5789999999 8888875322 247999999999999999999999 988 99999999999875445899999875
Q ss_pred Cccc-HHHHHHhc-cC-CCceEEEEeCC
Q 027409 123 SKDF-ARVLRFAR-FS-NKGAVLAFKNA 147 (223)
Q Consensus 123 K~~Y-~~~f~~~~-~l-~~GgvIV~DNv 147 (223)
=+.- .+.++... .+ +..=+|+.-|-
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 3332 44445332 22 22346666663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0022 Score=58.38 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
..|++.+-|..=+.+..+-.|||||-|+|- .|..|.++ +.+|+++|.||.++..-.+-++-. ..+ .+++.|
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGn--LT~~lLe~----~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~g 114 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGN--LTVKLLEA----GKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHG 114 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEeCCCCCH--HHHHHHHh----cCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEec
Confidence 467888888888888899999999999997 88888765 468999999999999988888876 555 999999
Q ss_pred chHHHhcCCCCccEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 103 dA~evL~~L~~fDfVFID 120 (223)
|.+.. ++..||.+.-.
T Consensus 115 D~lK~--d~P~fd~cVsN 130 (315)
T KOG0820|consen 115 DFLKT--DLPRFDGCVSN 130 (315)
T ss_pred ccccC--CCcccceeecc
Confidence 98762 33457766643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=57.07 Aligned_cols=114 Identities=11% Similarity=-0.072 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHH-HHH-----hhc----
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVK-AMY-----DVV---- 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~-~~~-----~a~---- 93 (223)
-++|.--+++.. +......+||-.|||.|| -.+|||. . |-.|+.+|+++..++.|.+ +-. ..-
T Consensus 21 ~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~--D~~~La~--~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 21 EPNPALVEYLDS-LALKPGGRVLVPGCGKGY--DMLWLAE--Q--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp TSTHHHHHHHHH-HTTSTSEEEEETTTTTSC--HHHHHHH--T--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCHHHHHHHHh-cCCCCCCeEEEeCCCChH--HHHHHHH--C--CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 567777777777 445666799999999999 7888874 2 5689999999998888732 221 000
Q ss_pred -Cce-EEEEecchHHHhcCC-CCccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEE
Q 027409 94 -GWV-SEVIVRQAEEVMGEL-KGVDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 94 -G~~-I~li~GdA~evL~~L-~~fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
... |++..||-.+.=+.. ++||+|+== -..+.=.+|.+.+ .+++|||.++.
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 111 799999999854443 589998622 2356668888866 56799998443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=57.07 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=70.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccE
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDf 116 (223)
.-..+.++||+||.|.|. .++.++.+ .|+-++|-.|. |+.++.|++ .+ .|+++.||-.+.+|. +|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~--~~~~l~~~--~P~l~~~v~Dl-p~v~~~~~~--~~----rv~~~~gd~f~~~P~---~D~ 161 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGH--FAIALARA--YPNLRATVFDL-PEVIEQAKE--AD----RVEFVPGDFFDPLPV---ADV 161 (241)
T ss_dssp STTTTSSEEEEET-TTSH--HHHHHHHH--STTSEEEEEE--HHHHCCHHH--TT----TEEEEES-TTTCCSS---ESE
T ss_pred ccccCccEEEeccCcchH--HHHHHHHH--CCCCcceeecc-Hhhhhcccc--cc----ccccccccHHhhhcc---ccc
Confidence 334578899999999997 66677654 35779988998 888898888 22 299999999966664 999
Q ss_pred EEEe-----CCCcccHHHHHHh-ccCCCc---eEEEEeCCCCCC
Q 027409 117 LVVD-----CTSKDFARVLRFA-RFSNKG---AVLAFKNAFQRS 151 (223)
Q Consensus 117 VFID-----a~K~~Y~~~f~~~-~~l~~G---gvIV~DNvl~~g 151 (223)
+++= -..++-...++.+ .-++|| -|+|.|.++...
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9984 3445556667655 445655 666777776544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0041 Score=61.71 Aligned_cols=107 Identities=15% Similarity=0.068 Sum_probs=68.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHh----cCCC----CcEEEEEeCCchHHHHH--------------HHHHHhh----c
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIA----ARHT----CARHVCIVPDERSRLAY--------------VKAMYDV----V 93 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A----~~~~----~g~i~TIE~d~e~~~~A--------------r~~~~~a----~ 93 (223)
.+.=+|+|+|=|+||...++|-+.- ..++ .=+++++|.+|-..+.. .+..+.. -
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3446899999999996565554331 0111 13799999876322222 2222110 0
Q ss_pred Cc----------eEEEEecchHHHhcCCC-CccEEEEeCC-Cccc-----HHHHHHh-ccCCCceEEEEeC
Q 027409 94 GW----------VSEVIVRQAEEVMGELK-GVDFLVVDCT-SKDF-----ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 94 G~----------~I~li~GdA~evL~~L~-~fDfVFIDa~-K~~Y-----~~~f~~~-~~l~~GgvIV~DN 146 (223)
|. ..++..|||.+.|+++. .+|.+|+|+- +..- .++|..+ ++.++||.+++--
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 22 26789999999999985 6999999972 2222 5566554 5669999999764
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00097 Score=58.03 Aligned_cols=70 Identities=26% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
+-|=++++.-.. -...++|+|.|. .++.-|.++ -||+.||.||..+..|++|+.-. |.. +++++|||+..
T Consensus 22 avF~~ai~~va~-d~~~DLGaGsGi--Ls~~Aa~~A----~rViAiE~dPk~a~~a~eN~~v~-g~~n~evv~gDA~~y 92 (252)
T COG4076 22 AVFTSAIAEVAE-DTFADLGAGSGI--LSVVAAHAA----ERVIAIEKDPKRARLAEENLHVP-GDVNWEVVVGDARDY 92 (252)
T ss_pred HHHHHHHHHHhh-hceeeccCCcch--HHHHHHhhh----ceEEEEecCcHHHHHhhhcCCCC-CCcceEEEecccccc
Confidence 445555555555 678899999996 554444432 38999999999999999999887 888 99999999863
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0033 Score=53.64 Aligned_cols=112 Identities=13% Similarity=-0.012 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 25 KESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
|.|.+.-+-..+++.. ....|||+|.|+|.. |=++.. -+..+-.++.||.+++....-.+.|.. +++++
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~--TkaIL~-~gv~~~~L~~iE~~~dF~~~L~~~~p~-----~~ii~ 100 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVI--TKAILS-RGVRPESLTAIEYSPDFVCHLNQLYPG-----VNIIN 100 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHh--HHHHHh-cCCCccceEEEEeCHHHHHHHHHhCCC-----ccccc
Confidence 4444444444444444 456899999999994 444432 233456799999999987665555444 58999
Q ss_pred cchHHH---hcCC--CCccEEEEeCCCc-----ccHHHHHHh-ccCCCceEEEE
Q 027409 102 RQAEEV---MGEL--KGVDFLVVDCTSK-----DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 102 GdA~ev---L~~L--~~fDfVFIDa~K~-----~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|||... |.+- ..||-|+------ .-.++++.+ ..++.||.+|-
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999763 3332 2599987643322 335677744 45688888874
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0031 Score=54.61 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fD 115 (223)
..+|.+||.+|||.|- .-.-|+.- .-.++++.+|.+++..+.|+..=++- |.+ |+|..-|-.+- ..+ ++||
T Consensus 65 ~~~A~~VlDLGtGNG~--~L~~L~~e--gf~~~L~GvDYs~~AV~LA~niAe~~-~~~n~I~f~q~DI~~~-~~~~~qfd 138 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGH--LLFQLAKE--GFQSKLTGVDYSEKAVELAQNIAERD-GFSNEIRFQQLDITDP-DFLSGQFD 138 (227)
T ss_pred cccccceeeccCCchH--HHHHHHHh--cCCCCccccccCHHHHHHHHHHHHhc-CCCcceeEEEeeccCC-ccccccee
Confidence 4456699999999995 33344432 22467999999999999977666666 887 99987776542 112 4688
Q ss_pred EEE----EeC-------CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLV----VDC-------TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVF----IDa-------~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+ .|| .++.-.-|++.+ ++|+|||+.|.--
T Consensus 139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 776 222 222224456655 4568999888654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0063 Score=48.86 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhc--CCCCcEEEEEeCCchHHHHHHHHHHhhcC--ce--EEE
Q 027409 30 AELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAA--RHTCARHVCIVPDERSRLAYVKAMYDVVG--WV--SEV 99 (223)
Q Consensus 30 g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~--~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~~--I~l 99 (223)
.+++..++.. .++..|+++|+|-|| .+..|+... ..++-+|+.||.+++..+.|.+.-++. + .. +++
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~Gy--Ls~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~ 86 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGY--LSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKL-GSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhH--HHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHh-cchhhccchh
Confidence 4555555555 889999999999999 777776411 135679999999999999999998887 6 42 666
Q ss_pred EecchHH
Q 027409 100 IVRQAEE 106 (223)
Q Consensus 100 i~GdA~e 106 (223)
+.++-.+
T Consensus 87 ~~~~~~~ 93 (141)
T PF13679_consen 87 IQGDIAD 93 (141)
T ss_pred hccchhh
Confidence 6665443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=53.90 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=65.9
Q ss_pred HHHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--
Q 027409 35 AMAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-- 111 (223)
Q Consensus 35 ~L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-- 111 (223)
.++..+. -.+||++|||.|- -|..... ..+...+.||+|++....+. ++ | +.+++||+.+-|+.+
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~---LL~~L~~--~k~v~g~GvEid~~~v~~cv---~r--G--v~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGE---LLAYLKD--EKQVDGYGVEIDPDNVAACV---AR--G--VSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHcCCCCEEEecCCCchH---HHHHHHH--hcCCeEEEEecCHHHHHHHH---Hc--C--CCEEECCHHHhHhhCCC
Confidence 3444443 3699999999884 3333322 24678999999998765543 33 4 579999999999987
Q ss_pred CCccEEEEeCCCcccHHHHHHh-ccC--CCceEEEEeCC
Q 027409 112 KGVDFLVVDCTSKDFARVLRFA-RFS--NKGAVLAFKNA 147 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~-~~l--~~GgvIV~DNv 147 (223)
+.||.|++--.-.+-.+=-+.+ .++ ..-+||-+-|.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 3899999865322221111122 122 55689999996
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0033 Score=51.57 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=52.6
Q ss_pred EEEeCCchHHHHHHHHHHhh-cC-ce-EEEEecchHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEE
Q 027409 73 VCIVPDERSRLAYVKAMYDV-VG-WV-SEVIVRQAEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 73 ~TIE~d~e~~~~Ar~~~~~a-~G-~~-I~li~GdA~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+|+++++++.|++..+.. .+ .. |+++.||+.+ |+-- +.||+|++-..- .+-.+.|..+ +.|+|||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 36899999999998776532 02 23 9999999976 4532 479999887533 3445666544 77899998876
Q ss_pred eCC
Q 027409 145 KNA 147 (223)
Q Consensus 145 DNv 147 (223)
-+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=58.86 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHh-c-CC---------------------------------
Q 027409 24 IKESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIA-A-RH--------------------------------- 67 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A-~-~~--------------------------------- 67 (223)
.+.+..+.-|-.++.- .+-..+++-.||.|- ..|-.|+- . .+
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGT--ilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGT--LLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccH--HHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555544 345789999999985 33322221 1 11
Q ss_pred -----CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEEEe
Q 027409 68 -----TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLVVD 120 (223)
Q Consensus 68 -----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVFID 120 (223)
...+|+.+|+|++.++.|++|++.+ |+. |+++.||+.+.-... +.||+|+.+
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~-g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRA-GVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHc-CCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 1347999999999999999999999 997 999999999854333 369999998
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0019 Score=57.75 Aligned_cols=103 Identities=13% Similarity=0.012 Sum_probs=65.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhh--cCce-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDV--VGWV-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~-I~li~GdA~evL~~L~~fDf 116 (223)
.|..|||||||.|- |+|=..+..++ +=+|+++|-+|..++..+++-... ...+ +-=+.++.+..=..-+.+|+
T Consensus 71 ~~~~ilEvGCGvGN---tvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 71 SAETILEVGCGVGN---TVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred ChhhheeeccCCCc---ccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 44589999999994 55554454433 368999999999988888875432 0111 33344444221111134663
Q ss_pred -----EEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 -----LVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 -----VFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||---.+++-...++.+ ++++|||.|++=+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 33344688888899865 6779999998765
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0073 Score=54.11 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=40.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.+|++||++|+|.| +++|-+...-+.--.++++|.++++.+.++..++..
T Consensus 32 f~P~~vLD~GsGpG---ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 32 FRPRSVLDFGSGPG---TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCCceEEEecCChH---HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999987 466665544343457999999999999999988765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0056 Score=50.24 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=56.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
+-|+|+.||.++|- |+|+++... --+|+.+|++|...+..+++++-. .+- .... + +.=...++||...
T Consensus 28 k~KtV~dIGA~iGd--SaiYF~l~G---AK~Vva~E~~~kl~k~~een~k~n-nI~DK~v~~-~---eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGS--SALYFLLRG---ASFVVQYEKEEKLRKKWEEVCAYF-NICDKAVMK-G---EWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccc--hhhHHhhcC---ccEEEEeccCHHHHHHHHHHhhhh-eeeeceeec-c---cccccCCCcceEE
Confidence 67999999999997 888887532 136999999999999999998876 442 1111 1 1112457999999
Q ss_pred EeCCCcccHHHH
Q 027409 119 VDCTSKDFARVL 130 (223)
Q Consensus 119 IDa~K~~Y~~~f 130 (223)
|||+ ...+.+
T Consensus 98 iDCe--GCE~~l 107 (156)
T PHA01634 98 MDCE--GCEEKL 107 (156)
T ss_pred EEcc--chHHhc
Confidence 9997 444444
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=53.55 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcC----CCCcEEEEEeCCchHHHHHHHH------------
Q 027409 26 ESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAAR----HTCARHVCIVPDERSRLAYVKA------------ 88 (223)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~----~~~g~i~TIE~d~e~~~~Ar~~------------ 88 (223)
+|++=++|.-.++. .++=+|.-.||++|==++||+|..... +.+-+|+.+|+|++.++.|++-
T Consensus 99 d~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~ 178 (287)
T PRK10611 99 EAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSP 178 (287)
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCH
Confidence 55555555544432 244699999999994445666654431 1235799999999999999875
Q ss_pred ------HHhh----cC-------ce--EEEEecchHHH-hcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEE
Q 027409 89 ------MYDV----VG-------WV--SEVIVRQAEEV-MGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVL 142 (223)
Q Consensus 89 ------~~~a----~G-------~~--I~li~GdA~ev-L~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvI 142 (223)
|.+. -| +. |+|...|..+- .+..++||+||.=. +++.-.+.++.+ ..|+|||++
T Consensus 179 ~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L 258 (287)
T PRK10611 179 QQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLL 258 (287)
T ss_pred HHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 2210 01 11 88888888762 22235799999732 223335556543 667999998
Q ss_pred EEeC
Q 027409 143 AFKN 146 (223)
Q Consensus 143 V~DN 146 (223)
+.-.
T Consensus 259 ~lG~ 262 (287)
T PRK10611 259 FAGH 262 (287)
T ss_pred EEeC
Confidence 7654
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.012 Score=50.61 Aligned_cols=106 Identities=13% Similarity=0.031 Sum_probs=61.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhc--CC---CCcEEEEEeCCchHHHHHHHH--------------HHhhc----C--c
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAA--RH---TCARHVCIVPDERSRLAYVKA--------------MYDVV----G--W 95 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~--~~---~~g~i~TIE~d~e~~~~Ar~~--------------~~~a~----G--~ 95 (223)
++=+|.-+||++|-=++||+|.... .. .+-+|+.+|+|+..++.|++- .++++ | +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 6789999999999666777776555 21 135899999999999999742 12221 1 1
Q ss_pred --e------EEEEecchHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 96 --V------SEVIVRQAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 96 --~------I~li~GdA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. |+|...|-++.-+..++||+||.=- +.+.-.+.++.+ ..|+|||.++.=.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1 8888888887222335899998753 222224555533 5679999988655
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0084 Score=51.89 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=59.8
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce---EEEEecchHH
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV---SEVIVRQAEE 106 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~---I~li~GdA~e 106 (223)
.+.+..-...++||||.|= ..++.| ....--+.+.||+.++..+.|+...++. +|.. |+++.||-++
T Consensus 37 ~~~l~~~dvF~DlGSG~G~--~v~~aa--l~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGN--VVFQAA--LQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HTT--TT-EEEEES-TTSH--HHHHHH--HHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HhCCCCCCEEEECCCCCCH--HHHHHH--HHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3455556688999999995 333332 2222245999999999999998754421 3664 9999999764
Q ss_pred --HhcCC-CCccEEEEeCCC--ccc-HHHHHHhccCCCceEEEEeC
Q 027409 107 --VMGEL-KGVDFLVVDCTS--KDF-ARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 107 --vL~~L-~~fDfVFIDa~K--~~Y-~~~f~~~~~l~~GgvIV~DN 146 (223)
..+.+ ..-|+||+..-- +.- ..+.+.+..+++|..||+=-
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred cHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 23332 568999998642 111 22222335569999999844
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0028 Score=56.68 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCC-eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 30 AELLSAMAAGWNAK-LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~~~~ak-~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
-.+++.++....-. .++|+|||+|- .++.+|. .. -+|+.+|+++++++.|++..... -.. ..+...+-.+
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gq--a~~~iae--~~--k~VIatD~s~~mL~~a~k~~~~~-y~~t~~~ms~~~~v~ 93 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQ--AARGIAE--HY--KEVIATDVSEAMLKVAKKHPPVT-YCHTPSTMSSDEMVD 93 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCc--chHHHHH--hh--hhheeecCCHHHHHHhhcCCCcc-cccCCcccccccccc
Confidence 56777777776544 99999999996 5555543 22 37999999999999999987754 121 4444433333
Q ss_pred HhcCCCCccEEEEeCCCccc---HHHHHHh-ccC-CCceEEEE
Q 027409 107 VMGELKGVDFLVVDCTSKDF---ARVLRFA-RFS-NKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y---~~~f~~~-~~l-~~GgvIV~ 144 (223)
.+..=+..|||..= .--+| .+++..+ +.| ++||+|++
T Consensus 94 L~g~e~SVDlI~~A-qa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 94 LLGGEESVDLITAA-QAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccCCCcceeeehhh-hhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 33222479988642 11122 4455433 666 78889886
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0065 Score=50.18 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhc-----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 29 VAELLSAMAAGW-----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 29 ~g~fL~~L~~~~-----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.-.++.++-+-. +..++|++|++.|- .+-+++. ...+.++++.+|+.+. . ..+ +..+.|
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGG--ws~~~~~-~~~~~~~v~avDl~~~-----------~-~~~~~~~i~~ 70 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGG--WSQVLLQ-RGGPAGRVVAVDLGPM-----------D-PLQNVSFIQG 70 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSH--HHHHHHT-STTTEEEEEEEESSST-----------G-S-TTEEBTTG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccc--eeeeeee-cccccceEEEEecccc-----------c-cccceeeeec
Confidence 344555555444 45999999999994 4433332 1223589999999988 1 223 455556
Q ss_pred ch-----HHHhcCC-----CCccEEEEeCC--------Cccc---HHHHHHh----ccCCCceEEEEeC
Q 027409 103 QA-----EEVMGEL-----KGVDFLVVDCT--------SKDF---ARVLRFA----RFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA-----~evL~~L-----~~fDfVFIDa~--------K~~Y---~~~f~~~----~~l~~GgvIV~DN 146 (223)
|. .+.+.+. .+||+|+.|.. ...+ .-.+..+ ..+++||..|+--
T Consensus 71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 53 2334332 37999999992 2222 1122222 4469999877654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=52.71 Aligned_cols=106 Identities=12% Similarity=-0.007 Sum_probs=65.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcC-----CCCcEEEEEeCCchHHHHHHH-------------------HHHhhc-C-
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAAR-----HTCARHVCIVPDERSRLAYVK-------------------AMYDVV-G- 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~-----~~~g~i~TIE~d~e~~~~Ar~-------------------~~~~a~-G- 94 (223)
++=+|..+||++|==++||||+.... +.+-+|+..|+|...++.|+. +|.+.. |
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 48899999999993333555544332 135789999999999998864 332220 1
Q ss_pred ce--------EEEEecchHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 95 WV--------SEVIVRQAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 95 ~~--------I~li~GdA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
++ |+|...|.++--+-.++||+||+== +++.=.+.++.. ..|+|||+++.-+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 21 5666666554322224699998641 222224444433 5679999998765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0018 Score=57.84 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcC---CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 29 VAELLSAMAAGWN---AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 29 ~g~fL~~L~~~~~---ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
+=++|..++.-.+ .+++|.+|||+|. ++..|- +--.+++.+|+++.|++.|.+- - .+. ++...||.
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL--~G~~lR----~~a~~ltGvDiS~nMl~kA~eK---g-~YD-~L~~Aea~ 178 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGL--TGEALR----DMADRLTGVDISENMLAKAHEK---G-LYD-TLYVAEAV 178 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCc--ccHhHH----HHHhhccCCchhHHHHHHHHhc---c-chH-HHHHHHHH
Confidence 3455665555443 6799999999998 444432 1124799999999999888653 2 332 45567887
Q ss_pred HHhcCC--CCccEEEEeCCCcccHHHHHH-----hccCCCceEEEEeC
Q 027409 106 EVMGEL--KGVDFLVVDCTSKDFARVLRF-----ARFSNKGAVLAFKN 146 (223)
Q Consensus 106 evL~~L--~~fDfVFIDa~K~~Y~~~f~~-----~~~l~~GgvIV~DN 146 (223)
..++.+ ++||+|- -++--.|.--++- ...|++||+.++--
T Consensus 179 ~Fl~~~~~er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 179 LFLEDLTQERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HHhhhccCCcccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 788765 3899984 3455556444442 25779999998754
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=54.41 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhh-cCce---EEEEecchHHHhcC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDV-VGWV---SEVIVRQAEEVMGE 110 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~li~GdA~evL~~ 110 (223)
|-+..+|+++|-||-+-|- .+-+-+++. =+.|.-+|+|..-++..++++... .|++ |.++.||..+.+..
T Consensus 116 l~s~~npkkvlVVgggDgg-----vlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~ 190 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGG-----VLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED 190 (337)
T ss_pred cccCCCCCeEEEEecCCcc-----ceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH
Confidence 4567899999999988663 233333443 367999999999999999999864 5776 99999999999998
Q ss_pred C--CCccEEEEeCCC------ccc-HHHHHHh-ccCCCceEEE--EeCCCCCC
Q 027409 111 L--KGVDFLVVDCTS------KDF-ARVLRFA-RFSNKGAVLA--FKNAFQRS 151 (223)
Q Consensus 111 L--~~fDfVFIDa~K------~~Y-~~~f~~~-~~l~~GgvIV--~DNvl~~g 151 (223)
+ ++||.|..|.+- ..| ..||+++ +-|+++|+++ +|++|.+-
T Consensus 191 ~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~ 243 (337)
T KOG1562|consen 191 LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL 243 (337)
T ss_pred hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence 7 489999999753 234 3456655 5679999876 46666543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0063 Score=53.50 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=51.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---e-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---V-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---~-I~li~GdA~evL~~L~~fDf 116 (223)
+-+.+|+||||+|+ .|.+++.. .-++|+.+|.++++... +.-+.. .+ . ..+..=++.++-+++..+|+
T Consensus 75 ~~~~vlDiG~gtG~--~t~~l~~~---ga~~v~avD~~~~~l~~--~l~~~~-~v~~~~~~ni~~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 75 KNKIVLDVGSSTGG--FTDCALQK---GAKEVYGVDVGYNQLAE--KLRQDE-RVKVLERTNIRYVTPADIFPDFATFDV 146 (228)
T ss_pred CCCEEEEcccCCCH--HHHHHHHc---CCCEEEEEeCCHHHHHH--HHhcCC-CeeEeecCCcccCCHhHcCCCceeeeE
Confidence 45689999999998 88887643 13689999999976544 222222 11 1 11222233333334456888
Q ss_pred EEEeCCCcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDCTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
+|+=..+ .++.+ ..+++ |.+|
T Consensus 147 sfiS~~~-----~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 147 SFISLIS-----ILPELDLLLNP-NDLT 168 (228)
T ss_pred EEeehHh-----HHHHHHHHhCc-CeEE
Confidence 8886543 34433 34455 4444
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0043 Score=52.05 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=72.7
Q ss_pred CCcHH-HHHHHHHHHHhcC---CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE
Q 027409 24 IKESG-VAELLSAMAAGWN---AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV 99 (223)
Q Consensus 24 ii~p~-~g~fL~~L~~~~~---ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l 99 (223)
.-.|+ .+..++++-...+ -|.++.+||+.|. .+++.+ +...--++..|+||+.++.+..|-+++ -++|++
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGm--Ls~a~s---m~~~e~vlGfDIdpeALEIf~rNaeEf-Evqidl 100 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGM--LSIAFS---MPKNESVLGFDIDPEALEIFTRNAEEF-EVQIDL 100 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhh--hHHHhh---cCCCceEEeeecCHHHHHHHhhchHHh-hhhhhe
Confidence 44555 4566777766654 7999999999997 554543 444457999999999999999999999 888999
Q ss_pred EecchHHHhcCCCCccEEEEeC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa 121 (223)
+.-|-++.....+.||-+.||-
T Consensus 101 Lqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred eeeeccchhccCCeEeeEEecC
Confidence 9998887666667899999994
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0092 Score=52.41 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHHHHHHHHHh-----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 29 VAELLSAMAAG-----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 29 ~g~fL~~L~~~-----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+-.||.-|... .+..+.|+.|+|+|-.+-. +. .+-=-+|.-+|+.++.++.|++++... +.. .++..-
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~--lL---l~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~ 111 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKG--LL---LPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCV 111 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHH--TC---CCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHH--HH---HHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEec
Confidence 46677766655 3688999999999984333 21 233358999999999999999998874 334 555555
Q ss_pred chHHHhcCCCCccEEEEeCC-----CcccHHHHHHhc-cCCCceEEEE-eCCCCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCT-----SKDFARVLRFAR-FSNKGAVLAF-KNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~~-~l~~GgvIV~-DNvl~~g 151 (223)
--.+.-|.-..||+|.+==- -++..+||.-|+ -|+|||+||. +|+-..+
T Consensus 112 gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 112 GLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp -GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred CHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 55555565458999998521 234577888774 4677777765 6776555
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.075 Score=48.83 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=88.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+.....+-+.-|...-+|-+||.|-||.|- +-+ =|....+. .-.|.-.|.++..++..++.+++- |++ ++|..
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GR--Yvl-Dal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-gL~~i~~f~~ 194 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGR--YVL-DALEKHPERPDSILLRDYSPINVEKGRALIAER-GLEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcH--HHH-HHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-CCccceEEEe
Confidence 344445555566667799999999999885 322 22222222 248999999999999999999999 999 59999
Q ss_pred cchHH--HhcCCC-CccEEEEeCCCcccHH------HHHHh-ccCCCceEEEEeCCCCCC
Q 027409 102 RQAEE--VMGELK-GVDFLVVDCTSKDFAR------VLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~e--vL~~L~-~fDfVFIDa~K~~Y~~------~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
|||.+ .+..++ ..+++.+-+==+.+++ .+.-+ ..+.|||.+|.-|--|+.
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 99976 577775 5899998764333322 23222 456999999999976655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=51.20 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh---cCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM---GEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL---~~L--~~fD 115 (223)
....+|+-..|.| +-|.+++.+. + +|+|+.+|.|++.++.|++.++.+ +-.++++.++=.++. ..+ +++|
T Consensus 20 ~ggiyVD~TlG~G--GHS~~iL~~l-~-~g~vigiD~D~~Al~~ak~~L~~~-~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFG--GHSKAILEQL-G-TGRLIGIDRDPQAIAFAKERLSDF-EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCCh--HHHHHHHHhC-C-CCEEEEEcCCHHHHHHHHHHHhhc-CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 3457888876666 3676777654 3 499999999999999999999876 545999999987654 333 3699
Q ss_pred EEEEeCCCccc
Q 027409 116 FLVVDCTSKDF 126 (223)
Q Consensus 116 fVFIDa~K~~Y 126 (223)
.|+.|-.-+.+
T Consensus 95 gIl~DLGvSS~ 105 (305)
T TIGR00006 95 GILVDLGVSSP 105 (305)
T ss_pred EEEEeccCCHh
Confidence 99999765544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.13 Score=36.63 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=64.3
Q ss_pred HHhcCCCe-EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH-hcCCC-
Q 027409 37 AAGWNAKL-IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV-MGELK- 112 (223)
Q Consensus 37 ~~~~~ak~-ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev-L~~L~- 112 (223)
........ ++++||+.|. .+ .++ ........++.+|.++.+...++...... +.. +.++.+|.... ++-..
T Consensus 43 ~~~~~~~~~~ld~~~g~g~--~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T COG0500 43 LRLLPGGLGVLDIGCGTGR--LA-LLA-RLGGRGAYVVGVDLSPEMLALARARAEGA-GLGLVDFVVADALGGVLPFEDS 117 (257)
T ss_pred hhhccCCCeeEEecCCcCH--HH-HHH-HhCCCCceEEEEeCCHHHHHHHHhhhhhc-CCCceEEEEeccccCCCCCCCC
Confidence 33444444 9999999997 33 222 12222247888999999888866554333 444 68888888773 44333
Q ss_pred -CccEEEEeCCCccc---HHHHHHh-ccCCCceEEEEeCCC
Q 027409 113 -GVDFLVVDCTSKDF---ARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 -~fDfVFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.||++ .-..-.++ ...+..+ +.++++|.++.....
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 69999 44333222 4555544 566777876665543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.054 Score=47.16 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=68.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-----EEEEecchHHHhc-----CCCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-----SEVIVRQAEEVMG-----ELKG 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-----I~li~GdA~evL~-----~L~~ 113 (223)
+|||||+|+|- =+.++|.+. +.-+-.+-|.+++...--+...+++ |++ +.+=.-+.-.-.. .-..
T Consensus 28 ~vLEiaSGtGq--Ha~~FA~~l--P~l~WqPSD~~~~~~~sI~a~~~~~-~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQ--HAVYFAQAL--PHLTWQPSDPDDNLRPSIRAWIAEA-GLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccH--HHHHHHHHC--CCCEEcCCCCChHHHhhHHHHHHhc-CCcccCCCeEeecCCCCCccccccccCCCC
Confidence 59999999997 666777543 3567888999999877777888887 776 3332222211111 1137
Q ss_pred ccEEEEe-----CCCcccHHHHHHh-ccCCCceEEEEeCCCC-CC
Q 027409 114 VDFLVVD-----CTSKDFARVLRFA-RFSNKGAVLAFKNAFQ-RS 151 (223)
Q Consensus 114 fDfVFID-----a~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~-~g 151 (223)
||.||.= +--+.-..+|... +.|++||+++..-=|. .|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 9999963 2233446677644 7789999999988764 44
|
The function of this family is unknown. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.039 Score=51.98 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=72.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCC-CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L-~~fDf 116 (223)
++-+|||.=+|+|. -+|-.|.-. +...+|+.-|+|++..+..++|++.- |++ |++..+||...|... ..||+
T Consensus 49 ~~~~~lDalaasGv--R~iRy~~E~-~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGV--RGIRYAKEL-AGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSH--HHHHHHHH--SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccH--HHHHHHHHc-CCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCE
Confidence 34499999999998 888777543 22358999999999999999999987 776 899999999999632 47999
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|=||.- +-=..|++ +++.++.||+|-+--
T Consensus 125 IDlDPf-GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDPF-GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE--S-S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC-CCccHhHHHHHHHhhcCCEEEEec
Confidence 988873 33357888 457779999987644
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.043 Score=47.96 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCC--cEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTC--ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~--g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|.-.-....|+-..+|..|+|+|+..|= |+||.|--+..-| -+++++|+|-.-.+.+..- .. |.|+
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GG--Sal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~ 123 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGG--SALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFI 123 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeeccccCc--hhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEE
Confidence 5678888888899999999999999999885 8999886444333 5888888876543322111 23 8999
Q ss_pred ecchH-----HHhcCCC---CccEEEEeCCCc--ccHHHHHHhccC-CCceEEEEeC
Q 027409 101 VRQAE-----EVMGELK---GVDFLVVDCTSK--DFARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 101 ~GdA~-----evL~~L~---~fDfVFIDa~K~--~Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
+|+.. +.+..++ +-=||.+|++-. +-..-++++.++ ..|--+|+-+
T Consensus 124 egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 124 EGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred eCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 99853 3333342 455788888743 334455666654 6666555544
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.027 Score=49.93 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=47.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCc-----e-EEEEecchHHHhcCC-CC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGW-----V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~-----~-I~li~GdA~evL~~L-~~ 113 (223)
+||+..+|-|- -++-+| +. |++||.+|.+|-.+..-+.-++++ ... . |+++.||+.+.|+.. ..
T Consensus 78 ~VLDaTaGLG~--Da~vlA-~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s 151 (234)
T PF04445_consen 78 SVLDATAGLGR--DAFVLA-SL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNS 151 (234)
T ss_dssp -EEETT-TTSH--HHHHHH-HH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS-
T ss_pred EEEECCCcchH--HHHHHH-cc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCC
Confidence 89999888885 565555 22 689999999999988888776655 122 1 999999999999932 48
Q ss_pred ccEEEEeCC
Q 027409 114 VDFLVVDCT 122 (223)
Q Consensus 114 fDfVFIDa~ 122 (223)
||.|.+|--
T Consensus 152 ~DVVY~DPM 160 (234)
T PF04445_consen 152 FDVVYFDPM 160 (234)
T ss_dssp -SEEEE--S
T ss_pred CCEEEECCC
Confidence 999999963
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.058 Score=51.73 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC-CC-CccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE-LK-GVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~-L~-~fDfVFI 119 (223)
.|||+.=++-|= =|..+| |.|.+.|.|+..|.|..++..-+.|+.+. |+. ..+...|+.|.=.+ +. .||=|++
T Consensus 243 ERIlDmcAAPGG--KTt~IA-alMkn~G~I~AnD~n~~r~~~l~~n~~rl-Gv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 243 ERILDMCAAPGG--KTTHIA-ALMKNTGVIFANDSNENRLKSLKANLHRL-GVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CeecchhcCCCc--hHHHHH-HHHcCCceEEecccchHHHHHHHHHHHHh-CCCceEEEccCcccccccccCcccceeee
Confidence 589999777774 555666 56777899999999999999999999999 999 77788888753212 33 6999999
Q ss_pred eCCCcc---------------------c----HHHHH-HhccCCCceEEEEeC
Q 027409 120 DCTSKD---------------------F----ARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 120 Da~K~~---------------------Y----~~~f~-~~~~l~~GgvIV~DN 146 (223)
||--+. | .++|. ++.++++||+||.--
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 985443 1 23343 457789999999754
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.053 Score=47.23 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=63.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH-----HHhc-CCC-
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE-----EVMG-ELK- 112 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~-----evL~-~L~- 112 (223)
+...|+++|++-| +....|......+++|+.||++|-. -.. |.++.||.. +-|. .++
T Consensus 45 ~~~~ViDLGAAPG---gWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 45 PGMVVVDLGAAPG---GWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CCCEEEEcCCCCC---cHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCC
Confidence 5699999999988 4445543445567889999998863 222 677777764 3333 343
Q ss_pred -CccEEEEeCCC--------cccHHHH------HHh-ccCCCceEEEEeCCCCCC
Q 027409 113 -GVDFLVVDCTS--------KDFARVL------RFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 113 -~fDfVFIDa~K--------~~Y~~~f------~~~-~~l~~GgvIV~DNvl~~g 151 (223)
++|+|.-|.++ ++|.... +.+ ..+++||..|+-..-.++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 57999999998 5553221 211 466999999987554443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.093 Score=46.35 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=72.3
Q ss_pred HHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 33 LSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 33 L~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
|..++... +..++.+|||-=+| ..+.|.. ..+.-+.+..|+++--++.|++|+++. ++. |+.+.||.+..|.
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAY--Lp~~Lv~--~~~~~~~va~eV~~gpl~~a~~~v~~~-~l~~~i~vr~~dgl~~l~ 81 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAY--LPIYLVK--NNPASTAVAGEVVPGPLESAIRNVKKN-NLSERIDVRLGDGLAVLE 81 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhH--hHHHHHh--cCCcceEEEeecccCHHHHHHHHHHhc-CCcceEEEeccCCccccC
Confidence 44444444 33449999999999 7767653 344568999999999999999999999 998 9999999988877
Q ss_pred CCCCccEEEEeCCCccc-HHHHH
Q 027409 110 ELKGVDFLVVDCTSKDF-ARVLR 131 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~~Y-~~~f~ 131 (223)
.-+.+|.+.|=+--+.- .+.++
T Consensus 82 ~~d~~d~ivIAGMGG~lI~~ILe 104 (226)
T COG2384 82 LEDEIDVIVIAGMGGTLIREILE 104 (226)
T ss_pred ccCCcCEEEEeCCcHHHHHHHHH
Confidence 54589999998754443 34444
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.037 Score=48.34 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=67.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..+-|+|||.||+.|. -+|+-|++. -..++..|++|-..+..+-|-+.. |++|.+..-|..- +-..||+++
T Consensus 77 tVrgkrVLd~gagsgL--vaIAaa~aG---A~~v~a~d~~P~~~~ai~lNa~an-gv~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 77 TVRGKRVLDLGAGSGL--VAIAAARAG---AAEVVAADIDPWLEQAIRLNAAAN-GVSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred ccccceeeecccccCh--HHHHHHHhh---hHHHHhcCCChHHHHHhhcchhhc-cceeEEeeccccC---CCcceeEEE
Confidence 4578999999999998 666655442 236999999999989999999988 9989988877654 224699887
Q ss_pred EeC---CCcccHHHHHHhccC--CCceEEEEe
Q 027409 119 VDC---TSKDFARVLRFARFS--NKGAVLAFK 145 (223)
Q Consensus 119 IDa---~K~~Y~~~f~~~~~l--~~GgvIV~D 145 (223)
.-- +|....+.......+ +...|+|.|
T Consensus 148 agDlfy~~~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred eeceecCchHHHHHHHHHHHHHhCCCEEEEeC
Confidence 632 344445555533333 444444444
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.084 Score=51.14 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHhc-------CCCeEEEEccCcchHHHHHHHHHhcCC------CCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 26 ESGVAELLSAMAAGW-------NAKLIVEAWTHGGPITTSIGLAIAARH------TCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~-------~ak~ILEIGT~~Gys~Stl~la~A~~~------~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
++.+.+++.-++... ...+|||.+||+|- ..++++..... -.-.++++|+|++.+..|+.++...
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~--fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGR--LIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccH--HHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 344566665544321 45699999999996 44444433321 1246899999999999999999987
Q ss_pred cCc-eEEEEecchHHHh----cC-CCCccEEEEe
Q 027409 93 VGW-VSEVIVRQAEEVM----GE-LKGVDFLVVD 120 (223)
Q Consensus 93 ~G~-~I~li~GdA~evL----~~-L~~fDfVFID 120 (223)
+. .++++.+|-+... .. .+.||+|+--
T Consensus 87 -~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 87 -ALLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred -CCCCceeeecccccccccccccccCcccEEEeC
Confidence 62 2777777765421 11 2479999753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.052 Score=48.54 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhc-----CCCCcEEEEEeCCchHHHHHHHHHHhhcCce---
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAA-----RHTCARHVCIVPDERSRLAYVKAMYDVVGWV--- 96 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~-----~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--- 96 (223)
-+++..+|+.-++...+..+|++-.||+|- .-++..... ......|+.+|+|+.....|+-|+.-. |..
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~--fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGG--FLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSH--HHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHCBG
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHH--HHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cccccc
Confidence 355688999999977777899999999995 322222211 024578999999999999999998765 655
Q ss_pred EEEEecchHHHhcC--CCCccEEEEe
Q 027409 97 SEVIVRQAEEVMGE--LKGVDFLVVD 120 (223)
Q Consensus 97 I~li~GdA~evL~~--L~~fDfVFID 120 (223)
..+..||.+..-.. ...||+|+..
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE
T ss_pred ccccccccccccccccccccccccCC
Confidence 57999999865443 3579999876
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.078 Score=48.63 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=61.8
Q ss_pred cccChhHHHHHHHHhhcccC-----------CCCcHHH--HHHHHHHHHhcC--------CCeEEEEccCcchHHHHHHH
Q 027409 3 LVWSPDAASKAYIDTVKSCE-----------NIKESGV--AELLSAMAAGWN--------AKLIVEAWTHGGPITTSIGL 61 (223)
Q Consensus 3 ~~w~~~~a~~ayl~~l~~~~-----------~ii~p~~--g~fL~~L~~~~~--------ak~ILEIGT~~Gys~Stl~l 61 (223)
+.|+...|.+++-.+|.... ....|-- ..++..+.-+.. .-++|+||||.-.+|.- |
T Consensus 43 idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpL--L 120 (299)
T PF05971_consen 43 IDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPL--L 120 (299)
T ss_dssp S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHH--H
T ss_pred EecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHH--H
Confidence 45777777666655554422 1233322 344444444333 24799999986544332 2
Q ss_pred HHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch-HHHhcCC----CCccEEEE
Q 027409 62 AIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA-EEVMGEL----KGVDFLVV 119 (223)
Q Consensus 62 a~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA-~evL~~L----~~fDfVFI 119 (223)
++...+=+.+..|+|++.++.|++|+++--+++ |+++.-+. ..++..+ +.|||...
T Consensus 121 --g~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 121 --GAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp --HHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred --hhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 222336689999999999999999998642566 88876543 3355554 35888875
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.18 Score=47.56 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC-CccEEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK-GVDFLVV 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~-~fDfVFI 119 (223)
+++|||-=+|+|. -+|-.|... +. +++-=|+||+..+.+++|.+.-.|.+++++.+||...|.++. .||+|=|
T Consensus 53 ~~~v~DalsatGi--RgIRya~E~---~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGI--RGIRYAVET---GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccch--hHhhhhhhc---CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec
Confidence 9999999999998 888876543 33 899999999999999999997513337888899999999874 6887666
Q ss_pred eCCCcccHHHHHH-hccCCCceEEEE
Q 027409 120 DCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
|-- +.=.+|++. ++-.+.||++-.
T Consensus 128 DPF-GSPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 128 DPF-GSPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCC-CCCchHHHHHHHHhhcCCEEEE
Confidence 642 333568884 566777888753
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.088 Score=46.99 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
|..+-+..-|..|+ +-. +.-||+||||+|.|++. | ...+=..+.+|++|.|++.|.+ ++. +-+++.
T Consensus 32 IQ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~v--L----~~~Gh~wiGvDiSpsML~~a~~--~e~---egdlil 99 (270)
T KOG1541|consen 32 IQAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSV--L----SDSGHQWIGVDISPSMLEQAVE--REL---EGDLIL 99 (270)
T ss_pred ehHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchhe--e----ccCCceEEeecCCHHHHHHHHH--hhh---hcCeee
Confidence 33444455555443 444 88999999999985553 2 2234458899999999999997 332 126788
Q ss_pred cchHHHhcCC-CCccEEEE--------eCCCccc------HHHHH-HhccCCCceEEEE
Q 027409 102 RQAEEVMGEL-KGVDFLVV--------DCTSKDF------ARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFI--------Da~K~~Y------~~~f~-~~~~l~~GgvIV~ 144 (223)
+|--+-|+-- +.||=|.. .|+|+.. ..||. ++..+++|+--|.
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 8877777643 47997653 4555543 34566 4455666665443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.1 Score=48.60 Aligned_cols=98 Identities=16% Similarity=0.006 Sum_probs=66.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
...-++|+=+|.| |..-.++.+|.|. +.+|+.+++++++.+.|++.=++. . |.....|..+.+++. ||+|+
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~~lGAd~-~--i~~~~~~~~~~~~~~--~d~ii 234 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAM---GAEVIAITRSEEKLELAKKLGADH-V--INSSDSDALEAVKEI--ADAII 234 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHc---CCeEEEEeCChHHHHHHHHhCCcE-E--EEcCCchhhHHhHhh--CcEEE
Confidence 4456889999999 8877888888765 489999999999998888753332 1 333345566666653 99887
Q ss_pred EeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 119 VDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
.=+. -..+-..++.|++||.+|.=-+.
T Consensus 235 ~tv~---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 235 DTVG---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ECCC---hhhHHHHHHHHhcCCEEEEECCC
Confidence 6554 22333455667667776665444
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.32 Score=43.47 Aligned_cols=113 Identities=17% Similarity=0.084 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.++|++.--=..++.-. .-|+||=+|=.= ..||++|.... ..+|+-+|+|+..++.-++.-++. |+.|+.+
T Consensus 24 ~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD---LtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~-gl~i~~~ 97 (243)
T PF01861_consen 24 YATPETTLRRAALMAERGDLEGKRILFLGDDD---LTSLALALTGL--PKRITVVDIDERLLDFINRVAEEE-GLPIEAV 97 (243)
T ss_dssp -B-HHHHHHHHHHHHHTT-STT-EEEEES-TT----HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHH-T--EEEE
T ss_pred cccHHHHHHHHHHHHhcCcccCCEEEEEcCCc---HHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHc-CCceEEE
Confidence 46776543322333333 469999999763 35777775443 468999999999999999999998 9999999
Q ss_pred ecchHHHhcC-C-CCccEEEEeCC-CcccHHHH-H-HhccC-CCceEE
Q 027409 101 VRQAEEVMGE-L-KGVDFLVVDCT-SKDFARVL-R-FARFS-NKGAVL 142 (223)
Q Consensus 101 ~GdA~evL~~-L-~~fDfVFIDa~-K~~Y~~~f-~-~~~~l-~~GgvI 142 (223)
.-|..+-||. + +.||.+|.|-- --+=...| . .+.-| .+|+.+
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~g 145 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAG 145 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EE
T ss_pred EecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceE
Confidence 9999999986 5 68999999963 11113333 2 44444 566544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.043 Score=49.46 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=90.0
Q ss_pred HHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EE--EEec----
Q 027409 32 LLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SE--VIVR---- 102 (223)
Q Consensus 32 fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~--li~G---- 102 (223)
-|..|=. ...++.+|+|||-.|. .|+.+|.--.+ -.|.++|+|+..++.|+++++.....+ +. ++.+
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~--lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGF--LTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred hhhhccccccCcceeEeccCCcch--hHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 3444422 3489999999999998 88888764432 369999999999999999988651122 11 0000
Q ss_pred -------------------------------chHHHhcCC--CCccEEEEe---------CCCcccHHHHHHh-ccCCCc
Q 027409 103 -------------------------------QAEEVMGEL--KGVDFLVVD---------CTSKDFARVLRFA-RFSNKG 139 (223)
Q Consensus 103 -------------------------------dA~evL~~L--~~fDfVFID---------a~K~~Y~~~f~~~-~~l~~G 139 (223)
+-.+.| .+ ..||.|+.= -.-+.-.++|..+ .++.||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 011122 11 257777642 1223447888755 778999
Q ss_pred eEEEEeCCCCCCcc-------ccccccccccccCCCceEEEEeecCCceEEEEEcc
Q 027409 140 AVLAFKNAFQRSTS-------GLRWQGQGVLDRGTRVVRSVFLPVGQGLDIVHVGS 188 (223)
Q Consensus 140 gvIV~DNvl~~g~~-------~~~~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k~~ 188 (223)
|++|..-==|.... ....+..++. -..+.++..++-++-|++-+....
T Consensus 203 GiLvvEPQpWksY~kaar~~e~~~~ny~~i~-lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 203 GILVVEPQPWKSYKKAARRSEKLAANYFKIF-LKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred cEEEEcCCchHHHHHHHHHHHHhhcCcccee-cCHHHHHhhhhhhhhheeeecccc
Confidence 99998764443320 0111110011 123447777788888887766543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.045 Score=47.85 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=35.2
Q ss_pred EEEEecchHHHhcCC--CCccEEEEeC--------------CCcccHHHH----H-HhccCCCceEEEE
Q 027409 97 SEVIVRQAEEVMGEL--KGVDFLVVDC--------------TSKDFARVL----R-FARFSNKGAVLAF 144 (223)
Q Consensus 97 I~li~GdA~evL~~L--~~fDfVFIDa--------------~K~~Y~~~f----~-~~~~l~~GgvIV~ 144 (223)
++++.||++|+|+.| +.+|+||.|- ....|.+++ . ..+.|++||+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478999999999999 4899999992 123344444 3 2367788998875
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.15 Score=47.24 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCCeEEEEccCcchHHHHH-HHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-------h---cCceEEEEecchHH-Hh
Q 027409 41 NAKLIVEAWTHGGPITTSI-GLAIAARHTCARHVCIVPDERSRLAYVKAMYD-------V---VGWVSEVIVRQAEE-VM 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl-~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-------a---~G~~I~li~GdA~e-vL 108 (223)
+..+||++|||=|- -.. |.. + .=+.++.+|++++.++.|++-++. . .....+++.+|+.. .|
T Consensus 62 ~~~~VLDl~CGkGG--DL~Kw~~-~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG--DLQKWQK-A---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTT--THHHHHH-T---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH
T ss_pred CCCeEEEecCCCch--hHHHHHh-c---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh
Confidence 67899999999773 232 432 2 136899999999999999999832 1 01238999999963 33
Q ss_pred cC-C--C--CccEEEEeCCCccc--------HHHHHHh-ccCCCceEEEEe
Q 027409 109 GE-L--K--GVDFLVVDCTSKDF--------ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~-L--~--~fDfVFIDa~K~~Y--------~~~f~~~-~~l~~GgvIV~D 145 (223)
.. + . +||+|=+=-. -+| ..++..+ ..|+|||+.|.-
T Consensus 136 ~~~~~~~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HCTSSSTTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhccccCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 3 2 7998865431 233 4466654 678999998753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.033 Score=44.65 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.3
Q ss_pred eEEEEecchHHHhcCCC-CccEEEEeCC-C----ccc-HHHHHHh-ccCCCceEEEEeCC
Q 027409 96 VSEVIVRQAEEVMGELK-GVDFLVVDCT-S----KDF-ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 96 ~I~li~GdA~evL~~L~-~fDfVFIDa~-K----~~Y-~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.+++..|||.+.|+++. .||.+|.|+- + +.+ .++|..+ +.+++||++++-.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 38899999999999984 8999999973 2 222 6677755 56699999988654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.11 Score=50.89 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
++.-..++.|+-++.-. .=+-+|++=||+|. +++++|.. =++|+-||++|+..+.|++|=+.- |++ .+
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~--iglala~~----~~~ViGvEi~~~aV~dA~~nA~~N-gisNa~ 434 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGT--IGLALARG----VKRVIGVEISPDAVEDAEKNAQIN-GISNAT 434 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCc--eehhhhcc----ccceeeeecChhhcchhhhcchhc-Ccccee
Confidence 44455677777766532 33677899999997 77777632 368999999999999999999998 999 99
Q ss_pred EEecchHHHhcCC-C----Ccc-EEEEeCC-CcccHHHHHHhcc
Q 027409 99 VIVRQAEEVMGEL-K----GVD-FLVVDCT-SKDFARVLRFARF 135 (223)
Q Consensus 99 li~GdA~evL~~L-~----~fD-fVFIDa~-K~~Y~~~f~~~~~ 135 (223)
||.|.|.++++.| + .=+ .+.||-. ++-...+...++-
T Consensus 435 Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 435 FIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred eeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHh
Confidence 9999999999987 3 235 7888865 6666777776643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.39 Score=43.23 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.-++||=+|++ |.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. +.....+..+.+...+.+|+|
T Consensus 169 ~g~~VlV~G~G-~vG~~aiqlak~~---G~~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVG-PIGCLIVAAVKTL---GAAEIVCADVSPRSLSLARE----M-GADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHH----c-CCcEEecCCcccHHHHhccCCCCCEE
Confidence 34788888863 6655666666543 44 68899999998888765 3 543 333333433433322359987
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
| |+--. ...++ .+..+++||.++.=..
T Consensus 240 i-d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 F-EVSGH--PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred E-ECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 6 66432 22343 4566788898876543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.46 Score=42.13 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc--CC-CCccE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG--EL-KGVDF 116 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~--~L-~~fDf 116 (223)
-.+||=+|.+.|..-| .++.- ..++|.|+++|.+|.. .|+.+.-| .-. |--|.+||..=-. .+ +..|+
T Consensus 74 gskVLYLGAasGTTVS--HvSDI-vg~~G~VYaVEfs~r~---~rdL~~la-~~R~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVS--HVSDI-VGPDGVVYAVEFSPRS---MRDLLNLA-KKRPNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp T-EEEEETTTTSHHHH--HHHHH-HTTTSEEEEEESSHHH---HHHHHHHH-HHSTTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCEEEEecccCCCccc--hhhhc-cCCCCcEEEEEecchh---HHHHHHHh-ccCCceeeeeccCCChHHhhcccccccE
Confidence 4699999999997444 34332 3568999999999864 33443333 222 6778899974222 22 68999
Q ss_pred EEEeCC-CcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDCT-SKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~-K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
||.|-+ ++|-.-+...+ ..|++||.++
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEE
Confidence 999965 55555444555 4567777554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.59 Score=43.96 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHh----------cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 24 IKESGVAELLSAMAAG----------WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----------~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
..+..+-.+..++... ..-+++|+||++.|- .|-.|+ ..+++|++||..+- +.. +.
T Consensus 184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGG--WT~~L~----~rG~~V~AVD~g~l----~~~-L~--- 249 (357)
T PRK11760 184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGG--WTYQLV----RRGMFVTAVDNGPM----AQS-LM--- 249 (357)
T ss_pred CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcH--HHHHHH----HcCCEEEEEechhc----CHh-hh---
Confidence 4455555555554433 456799999999994 553443 23679999995542 222 22
Q ss_pred Cce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh
Q 027409 94 GWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA 133 (223)
Q Consensus 94 G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~ 133 (223)
... |+.+.+|+....+.-.++|+++.|.. +.-.+..+++
T Consensus 250 ~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-e~P~rva~lm 289 (357)
T PRK11760 250 DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-EKPARVAELM 289 (357)
T ss_pred CCCCEEEEeccCcccCCCCCCCCEEEEecc-cCHHHHHHHH
Confidence 223 99999999998875568999999985 2333455555
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.37 Score=45.64 Aligned_cols=76 Identities=13% Similarity=0.002 Sum_probs=56.9
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC-------C----CcccHHHHHHh-ccC
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC-------T----SKDFARVLRFA-RFS 136 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa-------~----K~~Y~~~f~~~-~~l 136 (223)
++++.|+|+.+++.||.|-++| |+. |+|..+|+...=+.++.+|+|..+- . ...|..+.+.+ +.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~A-Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAA-GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhc-CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999 999 9999999988544457789888872 1 23677777666 445
Q ss_pred CC--ceEEEEeCC
Q 027409 137 NK--GAVLAFKNA 147 (223)
Q Consensus 137 ~~--GgvIV~DNv 147 (223)
+. -.|++++--
T Consensus 335 ~~ws~~v~tt~e~ 347 (381)
T COG0116 335 AGWSRYVFTTSED 347 (381)
T ss_pred cCCceEEEEccHH
Confidence 32 244444443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.27 Score=45.37 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH---HhcCC--CCccEEEEeCCCccc
Q 027409 57 TSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE---VMGEL--KGVDFLVVDCTSKDF 126 (223)
Q Consensus 57 Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e---vL~~L--~~fDfVFIDa~K~~Y 126 (223)
-|=++... .+..|+++.+|.||+.++.|++.+..+ +-.+.++.+.=.+ .++.+ ..+|-|++|-.-+.+
T Consensus 37 HS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~-~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 37 HSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEF-DGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred hHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhcc-CCcEEEEeCcHHHHHHHHHhcCCCceeEEEEeccCCcc
Confidence 33345433 455689999999999999999999998 7668999886544 44444 379999999765544
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.35 Score=43.23 Aligned_cols=118 Identities=15% Similarity=0.021 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
...+....++..+.+.+.... +.. |.+|- ++|.......-+++.+|..|+..+.=+++|... -+|+++.+|
T Consensus 41 ~~p~~l~~yl~~v~~~n~~~~---l~~---YPGSP-~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~D 111 (245)
T PF04378_consen 41 DLPPALQPYLDAVRALNPDGE---LRF---YPGSP-AIAARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRD 111 (245)
T ss_dssp GS-GGGHHHHHHHHHHSSSSS-----E---EE-HH-HHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-
T ss_pred cchHHHHHHHHHHHHhccCCC---cCc---CCCCH-HHHHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCc
Confidence 345556778888777764443 333 34466 444444444569999999999999888888764 239999999
Q ss_pred hHHHhcCC-CCcc---EEEEeC---CCcccHHHHHHhc----cCCCceEEEEeCCCCC
Q 027409 104 AEEVMGEL-KGVD---FLVVDC---TSKDFARVLRFAR----FSNKGAVLAFKNAFQR 150 (223)
Q Consensus 104 A~evL~~L-~~fD---fVFIDa---~K~~Y~~~f~~~~----~l~~GgvIV~DNvl~~ 150 (223)
+.+.|..+ .+-. |||||- .|..|.+..+.+. .-+.|-++|=-=++.+
T Consensus 112 G~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~ 169 (245)
T PF04378_consen 112 GYEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDR 169 (245)
T ss_dssp HHHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSH
T ss_pred hhhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccH
Confidence 99987764 5555 999997 7999999988662 2266666665555443
|
; PDB: 2OO3_A. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.46 Score=46.27 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=61.4
Q ss_pred hHHHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCe--------EEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc
Q 027409 8 DAASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKL--------IVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE 79 (223)
Q Consensus 8 ~~a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~--------ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~ 79 (223)
|-|.-.|++-|..-++.+ .-.+.+=.....+|. +|.||||+|. .++.-+.| . .-.+|.||.-.
T Consensus 29 elArSsy~DMl~D~dRNi----ky~~gi~~tIte~kh~~~~gkv~vLdigtGTGL--LSmMAvra-g--aD~vtA~Evfk 99 (636)
T KOG1501|consen 29 ELARSSYLDMLNDSDRNI----KYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGL--LSMMAVRA-G--ADSVTACEVFK 99 (636)
T ss_pred HHHHhhHHHHhhcccccH----HHHHHHHHHhcccceeccCceEEEEEccCCccH--HHHHHHHh-c--CCeEEeehhhc
Confidence 456667777776655432 233334444555665 5999999997 66443333 2 23699999999
Q ss_pred hHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 80 RSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 80 e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
.+.+.||+...+. |.+ |++|.-..-|
T Consensus 100 PM~d~arkI~~kn-g~SdkI~vInkrSte 127 (636)
T KOG1501|consen 100 PMVDLARKIMHKN-GMSDKINVINKRSTE 127 (636)
T ss_pred hHHHHHHHHHhcC-CCccceeeeccccce
Confidence 9999999999999 988 8887654443
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.3 Score=38.88 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=59.5
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--C
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--K 112 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~ 112 (223)
.+...-++||=.|.+.|.+..++.+|.+. +.+++.+..++++.+.+++ . |.. +.....+..+.+..+ .
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s~~~~~~l~~----~-Ga~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGSDDKVAWLKE----L-GFDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH----c-CCCEEEeCCCccHHHHHHHHCCC
Confidence 33445578888886656654666676543 6789989988887766654 4 554 433333444444433 3
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
.+|.|| |+--. ..++ .++.++++|.++.
T Consensus 211 gvd~vl-d~~g~---~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYF-DNVGG---EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEE-ECCCH---HHHHHHHHhhccCCEEEE
Confidence 699776 87544 3343 4566777777764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.4 Score=40.04 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=59.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~f 114 (223)
..-.+||=.|.+.|.+..++.+|++. +.+++.++.++++.+.+++ +. |.. |..... +..+.+.++ ..+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~---~l-Ga~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKN---KL-GFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH---hc-CCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34578999998766654666676542 6789999988887665542 24 654 443323 444555543 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|.|| |+--. ..++ .+..+++||.++.
T Consensus 230 D~v~-d~vG~---~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 230 DIYF-DNVGG---DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEEE-ECCCH---HHHHHHHHHhccCCEEEE
Confidence 9876 77543 2444 4566788887774
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.15 Score=42.00 Aligned_cols=103 Identities=12% Similarity=-0.016 Sum_probs=56.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE----------------
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI---------------- 100 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li---------------- 100 (223)
+...+|.+|+=+|.|.= +..++.++.+ -+.+++.+|.+++..+..+.++... +.+.
T Consensus 15 ~~~~~p~~vvv~G~G~v-g~gA~~~~~~---lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRV-GQGAAEIAKG---LGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T-EEEEESTSHH-HHHHHHHHHH---TT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCCeEEEEECCCHH-HHHHHHHHhH---CCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhh
Confidence 34568999999998642 2234444443 2689999999988766655544333 4552
Q ss_pred ---ecchHHHhcCCCCccEEEEeC--CCcccHHHH--HHhccCCCceEEEEeCCC
Q 027409 101 ---VRQAEEVMGELKGVDFLVVDC--TSKDFARVL--RFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ---~GdA~evL~~L~~fDfVFIDa--~K~~Y~~~f--~~~~~l~~GgvIV~DNvl 148 (223)
.......-+.+.++|+|.+-+ +...++.++ +.++.+++|.+| +|=..
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvI-vDis~ 140 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVI-VDISC 140 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEE-EETTG
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceE-EEEEe
Confidence 222222222235799999765 677888888 356666766555 45443
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.45 Score=35.52 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=14.6
Q ss_pred HHHHHHhcCCCeEEEEccCcchH
Q 027409 33 LSAMAAGWNAKLIVEAWTHGGPI 55 (223)
Q Consensus 33 L~~L~~~~~ak~ILEIGT~~Gys 55 (223)
....-...+||+||-||+++||+
T Consensus 30 vk~~~~~~GpK~VLViGaStGyG 52 (78)
T PF12242_consen 30 VKSQGKINGPKKVLVIGASTGYG 52 (78)
T ss_dssp HHHC---TS-SEEEEES-SSHHH
T ss_pred HHhcCCCCCCceEEEEecCCccc
Confidence 33333447899999999999995
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.56 Score=42.14 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEccCcchHHHHH-HHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 27 SGVAELLSAMAAGWN-AKLIVEAWTHGGPITTSI-GLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 27 p~~g~fL~~L~~~~~-ak~ILEIGT~~Gys~Stl-~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
|.--+|...+....+ |.+|+.||||.=- .++ ||. .+++...+.+|+|....+.-..++... |...++...|-
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNP--lalp~~~---~~~~a~Y~a~DID~~~ve~l~~~l~~l-~~~~~~~v~Dl 163 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNP--LALPWMP---EAPGATYIAYDIDSQLVEFLNAFLAVL-GVPHDARVRDL 163 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCH--HHHHTTT---SSTT-EEEEEESBHHHHHHHHHHHHHT-T-CEEEEEE-T
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCc--eehhhcc---cCCCcEEEEEeCCHHHHHHHHHHHHhh-CCCcceeEeee
Confidence 334567776666654 9999999998643 444 553 345679999999999999999999998 88866666655
Q ss_pred HHHhcCCCCccEEEE
Q 027409 105 EEVMGELKGVDFLVV 119 (223)
Q Consensus 105 ~evL~~L~~fDfVFI 119 (223)
+.-.+. ...|+.++
T Consensus 164 ~~~~~~-~~~DlaLl 177 (251)
T PF07091_consen 164 LSDPPK-EPADLALL 177 (251)
T ss_dssp TTSHTT-SEESEEEE
T ss_pred eccCCC-CCcchhhH
Confidence 443222 36888886
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.35 Score=38.11 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=26.6
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
+||...|...++++++.+...++++|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 689999932366665433455689999999999999998888
|
; PDB: 2PY6_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.21 Score=44.77 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.1
Q ss_pred EEEEecchHHHhcCC--CCccEEEEeCC----C-----------cccHH----HHHHh-ccCCCceEEEEe
Q 027409 97 SEVIVRQAEEVMGEL--KGVDFLVVDCT----S-----------KDFAR----VLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 I~li~GdA~evL~~L--~~fDfVFIDa~----K-----------~~Y~~----~f~~~-~~l~~GgvIV~D 145 (223)
.+++.||+++.+..+ +.||+||+|-- + +.|.. +|..+ +.|++||.++.-
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 588999999999888 37999999942 1 22433 34433 677888888764
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.5 Score=38.98 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
++||=.|.+.|.+..++.+|.+. +. +|+.+..++++.+.+++. . |.. +.....+-.+.+.++ ..+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s~~~~~~~~~~---l-Ga~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGSDEKCQLLKSE---L-GFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHh---c-CCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 68999987666644666666542 55 799999988876666552 4 554 333333434444443 369988
Q ss_pred EEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 118 VVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
| |+.-... .-+.+..+++||.+|.
T Consensus 229 i-d~~g~~~--~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 229 F-DNVGGEI--SDTVISQMNENSHIIL 252 (345)
T ss_pred E-ECCCcHH--HHHHHHHhccCCEEEE
Confidence 6 8754432 2235566788888774
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.9 Score=40.17 Aligned_cols=123 Identities=10% Similarity=-0.027 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|=..+++..+++..+=+++| . +++.++.+...++.+|++.+. .+.........+.+. |++++++..
T Consensus 47 ~~~p~~~~Le~~la~l~g~~~al~~~SG--~--~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~-gi~v~~vd~ 121 (380)
T PRK06176 47 SGNPTRFALEELIADLEGGVKGFAFASG--L--AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKN-GLSCTIIDT 121 (380)
T ss_pred CCChhHHHHHHHHHHHhCCCCEEEECCH--H--HHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhc-CeEEEEcCC
Confidence 5678899999999999988888766554 3 333333344566778888654 333344445556666 887666655
Q ss_pred chHHHhcC-CC-CccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-LK-GVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L~-~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ +. +..+||+..- ......=++.+ ... +.|.+||+||.+..+
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 44444443 43 6889998542 21112113333 333 668999999997543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.55 Score=44.47 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-hcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV-MGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev-L~~L~~fDfV 117 (223)
+-|-||++|+|.|. .++.-|.| .-.+|+.+|-+ ++++-|++.++.- .+. |.+|-|...|+ || ++.|.+
T Consensus 177 ~~kiVlDVGaGSGI--LS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLP--Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGI--LSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASN-NLADRITVIPGKIEDIELP--EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccH--HHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcC-CccceEEEccCccccccCc--hhccEE
Confidence 56889999999996 55443332 12479999985 8899999999987 676 99999988773 33 478877
Q ss_pred EEeCCCccc----HHHHHHh----ccCCCceE
Q 027409 118 VVDCTSKDF----ARVLRFA----RFSNKGAV 141 (223)
Q Consensus 118 FIDa~K~~Y----~~~f~~~----~~l~~Ggv 141 (223)
.-. +-.| .+.+|.+ +-++|.|-
T Consensus 248 ISE--PMG~mL~NERMLEsYl~Ark~l~P~Gk 277 (517)
T KOG1500|consen 248 ISE--PMGYMLVNERMLESYLHARKWLKPNGK 277 (517)
T ss_pred Eec--cchhhhhhHHHHHHHHHHHhhcCCCCc
Confidence 643 4455 3444422 44566664
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.1 Score=36.91 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC--CccEEEEe------CCCccc------HHHHH-Hh
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK--GVDFLVVD------CTSKDF------ARVLR-FA 133 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~--~fDfVFID------a~K~~Y------~~~f~-~~ 133 (223)
+|+..|+.++.++.+++.++++ |+. |+++...=.++..-++ ++|++... +||.-- ..-++ ++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 6899999999999999999999 887 9999888777555553 69998876 444433 44555 34
Q ss_pred ccCCCceEEEEeCCCCCC
Q 027409 134 RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 134 ~~l~~GgvIV~DNvl~~g 151 (223)
.+|++||+|+. |.+.|
T Consensus 80 ~lL~~gG~i~i--v~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITI--VVYPG 95 (140)
T ss_dssp HHEEEEEEEEE--EE--S
T ss_pred HhhccCCEEEE--EEeCC
Confidence 67799999987 44443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.85 Score=42.82 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=66.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc------CceEEEEecchHH-HhcC-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV------GWVSEVIVRQAEE-VMGE- 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~------G~~I~li~GdA~e-vL~~- 110 (223)
+.+...++++|||-|= -.+-+-.|.. +.+++||+.+-.++.|++-+++.. -.+++|+.||... -|.+
T Consensus 115 ~~~~~~~~~LgCGKGG--DLlKw~kAgI---~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGG--DLLKWDKAGI---GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred hccccccceeccCCcc--cHhHhhhhcc---cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 4577889999999883 4443333432 689999999999998887665431 2238999999954 4444
Q ss_pred C---CC-ccEEEEe-----CC--CcccHHHHH-HhccCCCceEEEEe
Q 027409 111 L---KG-VDFLVVD-----CT--SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 111 L---~~-fDfVFID-----a~--K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+ ++ ||+|=.- |. -++-...+. .+..|+|||+.|.-
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 3 34 8876332 11 112233343 55788999998863
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.44 Score=36.01 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcCC--CCccEEEEeCCCcccHHHH-
Q 027409 57 TSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGEL--KGVDFLVVDCTSKDFARVL- 130 (223)
Q Consensus 57 Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~L--~~fDfVFIDa~K~~Y~~~f- 130 (223)
.+..++..... ++ .++-||.|++..+.+++ . | +.++.||+.+ +|.+. +..|.|++..+.+..--..
T Consensus 9 ~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~----~-~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 9 IGREIAEQLKE-GGIDVVVIDRDPERVEELRE----E-G--VEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH----T-T--SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh----c-c--cccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 55566666555 56 89999999998666543 3 4 4789999964 77765 5899999998755443222
Q ss_pred HHhccCCCceEEE
Q 027409 131 RFARFSNKGAVLA 143 (223)
Q Consensus 131 ~~~~~l~~GgvIV 143 (223)
..++.+.+..-|+
T Consensus 81 ~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 LLARELNPDIRII 93 (116)
T ss_dssp HHHHHHTTTSEEE
T ss_pred HHHHHHCCCCeEE
Confidence 3345444443333
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.82 Score=42.79 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE--
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV-- 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI-- 119 (223)
-+..|++|-|+|- .+-.... .-+ +|--|+.|...+..++.++. - | |+.+.||-++-+| +=|.||+
T Consensus 178 v~~avDvGgGiG~---v~k~ll~-~fp--~ik~infdlp~v~~~a~~~~-~-g--V~~v~gdmfq~~P---~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGR---VLKNLLS-KYP--HIKGINFDLPFVLAAAPYLA-P-G--VEHVAGDMFQDTP---KGDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhH---HHHHHHH-hCC--CCceeecCHHHHHhhhhhhc-C-C--cceecccccccCC---CcCeEEEEe
Confidence 5889999999985 3322222 222 48888999999999999998 6 7 7889999887655 4668886
Q ss_pred ---eCCCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 120 ---DCTSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 120 ---Da~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|=.-++..++|+-| .-+ ..|.|||.|||....
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 55567788899866 445 677888999998753
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.23 Score=37.97 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--CccEEEEeCCCcccHHHHH
Q 027409 57 TSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--GVDFLVVDCTSKDFARVLR 131 (223)
Q Consensus 57 Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~fDfVFIDa~K~~Y~~~f~ 131 (223)
.++.+|++. +++|+.++.++++.+.++++ |.. +.....|..+.+.++ + ++|.|| ||.- ....++
T Consensus 5 ~a~q~ak~~---G~~vi~~~~~~~k~~~~~~~-----Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vi-d~~g--~~~~~~ 73 (130)
T PF00107_consen 5 MAIQLAKAM---GAKVIATDRSEEKLELAKEL-----GADHVIDYSDDDFVEQIRELTGGRGVDVVI-DCVG--SGDTLQ 73 (130)
T ss_dssp HHHHHHHHT---TSEEEEEESSHHHHHHHHHT-----TESEEEETTTSSHHHHHHHHTTTSSEEEEE-ESSS--SHHHHH
T ss_pred HHHHHHHHc---CCEEEEEECCHHHHHHHHhh-----cccccccccccccccccccccccccceEEE-EecC--cHHHHH
Confidence 677777653 48999999999988777653 433 444455567777665 2 699776 5543 345676
Q ss_pred -HhccCCCceEEEEeCCCC
Q 027409 132 -FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 132 -~~~~l~~GgvIV~DNvl~ 149 (223)
.+..+++||.++.=-+..
T Consensus 74 ~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHEEEEEEEEEESSTS
T ss_pred HHHHHhccCCEEEEEEccC
Confidence 446678889988877665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.4 Score=32.13 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred EEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC-CCceEE-EE
Q 027409 72 HVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS-NKGAVL-AF 144 (223)
Q Consensus 72 i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l-~~GgvI-V~ 144 (223)
|.-+|.++...+..++.++.. |+. +. ...++.+.+..+ ..||+|++|..-. ...++++.++.. +...+| ++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-~~~~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-GYEEVT-TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-TEEEEE-EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhC-CCCEEE-EECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEec
Confidence 456899999999999999988 995 54 667787777766 3799999997544 445666666433 333444 44
Q ss_pred eC
Q 027409 145 KN 146 (223)
Q Consensus 145 DN 146 (223)
++
T Consensus 79 ~~ 80 (112)
T PF00072_consen 79 DE 80 (112)
T ss_dssp SS
T ss_pred CC
Confidence 33
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.59 Score=41.85 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-----HHhh-cCce---EEEEecchHHHhcCC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-----MYDV-VGWV---SEVIVRQAEEVMGEL 111 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-----~~~a-~G~~---I~li~GdA~evL~~L 111 (223)
+.++|||+|+|+|.. ++..|+. .+..+++-|. ++....-+.+ .+-. +|.+ ..+.-|+|......+
T Consensus 86 ~~~~vlELGsGtglv--G~~aa~~---~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLV--GILAALL---LGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHH--HHHHHHH---hcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 688999999999983 4333322 2344544443 2222222222 2222 2434 566778887766555
Q ss_pred CC-ccEEEE-eC--CCcccHHHHHHh
Q 027409 112 KG-VDFLVV-DC--TSKDFARVLRFA 133 (223)
Q Consensus 112 ~~-fDfVFI-Da--~K~~Y~~~f~~~ 133 (223)
+. ||+|+. |+ ..+.+......+
T Consensus 160 ~~~~DlilasDvvy~~~~~e~Lv~tl 185 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEESFEGLVKTL 185 (248)
T ss_pred CCcccEEEEeeeeecCCcchhHHHHH
Confidence 55 777764 33 233444444444
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.34 Score=44.72 Aligned_cols=82 Identities=16% Similarity=0.031 Sum_probs=50.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch---HHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA---EEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA---~evL~~L---~~ 113 (223)
.+...+|+-.-|. ++-|-++..+. + +|+|+.+|.||+.++.|++.++.+ +-.+.++.++= .+.|..+ ..
T Consensus 19 ~~~g~~vD~T~G~--GGHS~aiL~~~-~-~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 19 KPGGIYVDCTFGG--GGHSKAILEKL-P-NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp -TT-EEEETT-TT--SHHHHHHHHT--T-T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred CCCceEEeecCCc--HHHHHHHHHhC-C-CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3444566643333 34565776543 3 399999999999999999998877 55577777654 4455544 47
Q ss_pred ccEEEEeCCCccc
Q 027409 114 VDFLVVDCTSKDF 126 (223)
Q Consensus 114 fDfVFIDa~K~~Y 126 (223)
+|.|++|-.-+.+
T Consensus 94 ~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 94 VDGILFDLGVSSM 106 (310)
T ss_dssp EEEEEEE-S--HH
T ss_pred cCEEEEccccCHH
Confidence 9999999875544
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.96 E-value=1 Score=42.11 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=53.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
..+++|+=||+| +.+..++..+ ..-+.+|+-+|+++++.+.+...+ |..+.....+..+....+..+|+|+.
T Consensus 165 l~~~~VlViGaG-~vG~~aa~~a---~~lGa~V~v~d~~~~~~~~l~~~~----g~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGG-VVGTNAAKMA---NGLGATVTILDINIDRLRQLDAEF----GGRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCC-HHHHHHHHHH---HHCCCeEEEEECCHHHHHHHHHhc----CceeEeccCCHHHHHHHHccCCEEEE
Confidence 467889999996 2222332332 333678999999988766554433 32233333333222223467999987
Q ss_pred eCC--CcccHHHH--HHhccCCCceEEEE
Q 027409 120 DCT--SKDFARVL--RFARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~--K~~Y~~~f--~~~~~l~~GgvIV~ 144 (223)
-+- ....+.++ +.+..+++|++||.
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 541 22233333 24455688876553
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=90.94 E-value=4.7 Score=37.24 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=63.4
Q ss_pred HHHhcCCC-eEEEEccCcchHHHHHHHHHhcCC--CCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHH--
Q 027409 36 MAAGWNAK-LIVEAWTHGGPITTSIGLAIAARH--TCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEV-- 107 (223)
Q Consensus 36 L~~~~~ak-~ILEIGT~~Gys~Stl~la~A~~~--~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ev-- 107 (223)
+++..++. .|+|+|||.|. =+--|..+..+ ...+-+.||++.+.++.|.+.+... .++ |.-+.||=.+-
T Consensus 70 Ia~~i~~~~~lIELGsG~~~--Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLR--KVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-NFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred HHHhcCCCCEEEEECCCchH--HHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-cCCCeEEEEEEecHHHHHh
Confidence 34444444 79999999885 33333333322 2357889999999999999999943 344 55588876554
Q ss_pred -hcC--C-CCccEEEEe-CCCccc-----HHHHHHh-c-cCCCce-EEE
Q 027409 108 -MGE--L-KGVDFLVVD-CTSKDF-----ARVLRFA-R-FSNKGA-VLA 143 (223)
Q Consensus 108 -L~~--L-~~fDfVFID-a~K~~Y-----~~~f~~~-~-~l~~Gg-vIV 143 (223)
|+. . ....++|.= ..=+|+ ..++..+ + .++||+ +||
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 432 2 234555444 344444 4666655 4 465544 444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.4 Score=37.47 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=62.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh--cCC-CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM--GEL-KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL--~~L-~~f 114 (223)
..-.+||=+|.+.|...|- .+. .-.+|+|+++|.++..- ++.+.-+ --. |==|.+||.--- ..+ +..
T Consensus 75 ~~g~~VLYLGAasGTTvSH--VSD--Iv~~G~iYaVEfs~R~~---reLl~~a-~~R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSH--VSD--IVGEGRIYAVEFSPRPM---RELLDVA-EKRPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCCCEEEEeeccCCCcHhH--HHh--ccCCCcEEEEEecchhH---HHHHHHH-HhCCCceeeecccCCcHHhhhhcccc
Confidence 3467999999999975554 332 22379999999998754 4444433 222 667889997422 233 689
Q ss_pred cEEEEeCCCcccHHHH-HHh-ccCCCce-EEEE
Q 027409 115 DFLVVDCTSKDFARVL-RFA-RFSNKGA-VLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f-~~~-~~l~~Gg-vIV~ 144 (223)
|.||.|-+..+=.+.+ ... ..|++|| ++++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 9999997755555555 444 4565554 4443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.26 Score=48.12 Aligned_cols=96 Identities=7% Similarity=0.079 Sum_probs=51.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCceEEEEecc-hHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWVSEVIVRQ-AEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~I~li~Gd-A~evL~~L-~~fDf 116 (223)
.+-+.+|+||||+|- .+-.| .+.+-...|+-.+... .++..|+ +- |+. .+.|- +..-|+-- ..||+
T Consensus 116 g~iR~~LDvGcG~aS--F~a~l----~~r~V~t~s~a~~d~~--~~qvqfaleR-Gvp--a~~~~~~s~rLPfp~~~fDm 184 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS--FGAYL----LERNVTTMSFAPNDEH--EAQVQFALER-GVP--AMIGVLGSQRLPFPSNAFDM 184 (506)
T ss_pred CceEEEEeccceeeh--hHHHH----hhCCceEEEcccccCC--chhhhhhhhc-Ccc--hhhhhhccccccCCccchhh
Confidence 566899999999873 33233 2334344455555443 3444444 33 554 11111 12334433 37999
Q ss_pred E-----EEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 117 L-----VVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 117 V-----FIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
| .|+-...+=.-+||.=+.|||||..|-..
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecC
Confidence 8 33332222222345558899999988766
|
; GO: 0008168 methyltransferase activity |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.6 Score=39.77 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDf 116 (223)
-++||=.|++ +.+..++.+|++ .+. +|+.++.++++.+.|++ . |.. +.....+..+.+.++ ..+|+
T Consensus 192 g~~VlV~G~G-~vG~~a~~lak~---~G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 192 GQSVAVVGLG-GVGLSALLGAVA---AGASQVVAVDLNEDKLALARE----L-GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCEEEEECCC-HHHHHHHHHHHH---cCCCcEEEEcCCHHHHHHHHH----c-CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4678888853 543344455543 355 69999999998887764 4 554 333333444545444 26997
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|| |+-- ....++ .++.+++||.++.
T Consensus 263 vi-d~~G--~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AF-EMAG--SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred EE-ECCC--ChHHHHHHHHHHhcCCEEEE
Confidence 75 7652 223443 4566677777664
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.35 E-value=4.6 Score=37.17 Aligned_cols=121 Identities=8% Similarity=0.020 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|...+|=..|++..++...+= ++.|. .++.++.+...++.+|++.+. .+......+..++.. |..+.++..
T Consensus 49 ~~~pt~~~le~~la~l~g~~~~~~--~~sG~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~vd~ 123 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGGDQGFA--CSSGM--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKW-NVRFVYVNT 123 (366)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhcc-CceEEEECC
Confidence 457788999999999999887644 44454 344444444455667776654 333445566667777 888555543
Q ss_pred -chHHHhcCC-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
|..++...+ ++-++||+.. ++.....-++.+ ... +.|.+||+||++.
T Consensus 124 ~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 124 ASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred CCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 333333334 3678999854 222222334433 333 6689999999974
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.21 E-value=2.9 Score=40.05 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=90.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE-eCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|..-.+=..++++.+++..|=.-+|-. +++.++. ...+.+++|++. +..-..+...++...++ |..+.++..
T Consensus 74 ~~nPt~~~le~~iaal~ga~~~l~fsSGma--A~~~al~-~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~-gie~~~vd~ 149 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEGAAHALLFSSGMA--AITVALL-HLLPAGDHIVATGDVYGGTLRILRKFLPKF-GGEGDFVDV 149 (409)
T ss_pred CCCCchHHHHHHHHHHhCCceEEEecccHH--HHHHHHH-HhcCCCCcEEEeCCCcccHHHHHHHHHHHh-Cceeeeech
Confidence 345666777788999999999888755532 2333332 335677888776 56677788888888888 999999998
Q ss_pred chHHHhcCC-C-CccEEEEeCCCcccHHHHH--Hh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCTSKDFARVLR--FA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~K~~Y~~~f~--~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+-+... + .-++||+-.----+.+..+ .+ ++. ++|-+||+||.|...
T Consensus 150 ~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 150 DDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred hhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 888866654 4 4999999986555555543 23 443 999999999998766
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.12 E-value=2 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=58.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--G 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~ 113 (223)
..-++||=.|+ .+.+..++.+|.+ .+. +|+.++.++++.+.|++ . |.. +.....+..+.+.++ + .
T Consensus 175 ~~g~~VlV~G~-g~vG~~a~~~ak~---~G~~~Vi~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC-GGVGDAAIAGAAL---AGASKIIAVDIDDRKLEWARE----F-GATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----c-CCceEEcCCCcCHHHHHHHHhCCCC
Confidence 34578888886 3554455556554 255 59999999998887754 4 554 444444555555543 2 5
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|+|| |+--.. ..++ .+..+++||.+|.=
T Consensus 246 ~d~vi-d~~g~~--~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVI-DAVGRP--ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEE-ECCCCH--HHHHHHHHHhccCCEEEEE
Confidence 99765 875432 2333 45666888887753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.6 Score=36.94 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=53.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
..-.+||-.|++ +.+..++.+|.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+..+ ..+|
T Consensus 164 ~~~~~vli~g~g-~vG~~~~~la~~---~G~~V~~~~~s~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 164 KPGETVLVIGLG-GLGLNAVQIAKA---MGAAVIAVDIKEEKLELAKE----L-GADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHH----h-CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 344678887764 333355566543 36789999999887766654 4 654 333333444444222 3699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
. ++|+--. ...++ .++.+++||.++.
T Consensus 235 ~-vid~~g~--~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 235 V-IFDFVGT--QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred E-EEECCCC--HHHHHHHHHHhhcCCEEEE
Confidence 5 5676422 23444 4466777777764
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=90.08 E-value=3.6 Score=36.37 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=57.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~f 114 (223)
..-.+||=.|.+.|.+..++.+|++ .+.+++.+..++++.+.+++ . |.. +..... +..+.+..+ ..+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~---~G~~Vi~~~~s~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKVAYLKK----L-GFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCCEEEeccccccHHHHHHHhCCCCe
Confidence 3446888888665554455566554 36788888888887666643 4 654 333322 333444443 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|.|| |+--.. .++ .+..+++||.+|.-
T Consensus 209 dvv~-d~~G~~---~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNVGGE---FSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECCCHH---HHHHHHHHhCcCcEEEEe
Confidence 9877 876432 334 55677888888853
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=90.04 E-value=5 Score=34.57 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=56.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~fDf 116 (223)
....++||=.|.+.+.+..++.+|.+ .+.+|+.+..+++..+.++ +. |.. +-...++..+.+.++ .++|+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~~----~~-g~~~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKA---LGATVTATTRSPERAALLK----EL-GADEVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHH----hc-CCcEEEecCccHHHHHHHhCCCceE
Confidence 44567899888755544466666654 3678998888887765553 34 664 211133444444444 36998
Q ss_pred EEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
+| |+... ..+ +.++.++++|.++.
T Consensus 212 vl-~~~~~---~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 212 VL-ELVGT---ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred EE-ECCCh---HHHHHHHHHhccCCEEEE
Confidence 87 77654 234 35566666776663
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=9.2 Score=36.23 Aligned_cols=123 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHH-HhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLA-IAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la-~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+..|=..|+.+-++...+=..+ |. ++|..+ .+...++.+|++.+ .....+...++.+++. |+++.++.
T Consensus 59 ~~nPt~~~le~~la~LEg~~~a~~~~S--Gm--aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~-Gi~v~~vd 133 (395)
T PRK08114 59 RGTLTHFSLQEAMCELEGGAGCALYPC--GA--AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTWFD 133 (395)
T ss_pred CCChhHHHHHHHHHHHhCCCeEEEEhH--HH--HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 568888999999999999999988877 44 333321 13345567777654 4445667777778888 99877765
Q ss_pred cchHHHhcC-CC-CccEEEEeCCCcccHHHH------HHhccCCCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-LK-GVDFLVVDCTSKDFARVL------RFARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L~-~fDfVFIDa~K~~Y~~~f------~~~~~l~~GgvIV~DNvl~~g 151 (223)
..-.+.+.+ ++ +-.+||++.--..-.... +.++...+|.++|+||.+.-+
T Consensus 134 ~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 134 PLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 433343443 43 578999997544332222 222332357999999998644
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=89.86 E-value=4.2 Score=36.26 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=58.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCC--CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGEL--KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L--~~ 113 (223)
...-++||=.|.+.|.+..++.+|.+ .+.+++.+..++++.+.+++. . |.. +..-.. +..+.+.++ ..
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~---~G~~Vi~~~~~~~~~~~~~~~---l-Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKL---KGCYVVGSAGSDEKVDLLKNK---L-GFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHh---c-CCceeEEcCCcccHHHHHHHhCCCC
Confidence 34457899889866664455666654 367888888888877766543 3 544 332222 334444433 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|+|| |+--. ..++ .+..++++|.++.
T Consensus 222 vd~v~-d~~g~---~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 222 IDIYF-DNVGG---KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCcEEEE
Confidence 99887 87543 2343 5566777888774
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.78 E-value=5.6 Score=36.07 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=46.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|.-||+ |+.+++++++.+.......|+-+|+++++.+....-+..+... . ..+..+|- +. +..-|+|||=+
T Consensus 2 kI~IIGa--G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~---l~~aDiViita 75 (308)
T cd05292 2 KVAIVGA--GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-AD---CKGADVVVITA 75 (308)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HH---hCCCCEEEEcc
Confidence 4778898 5677888777665433358999999998776322223333011 1 44445553 32 45789999987
Q ss_pred CC
Q 027409 122 TS 123 (223)
Q Consensus 122 ~K 123 (223)
..
T Consensus 76 ~~ 77 (308)
T cd05292 76 GA 77 (308)
T ss_pred CC
Confidence 64
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.71 E-value=3 Score=38.41 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=56.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL-- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L-- 111 (223)
...-++||=.|++ +.+..++.+|.+. +. ++++++.++++.+.|++ . |.. |.... .+..+.+.++
T Consensus 191 ~~~g~~VlV~G~G-~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a~~----l-Ga~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLG-TVGLSVAQGAKLR---GASQIIGVDINPEKAEKAKT----F-GVTDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCcEEEcccccchHHHHHHHHHhC
Confidence 3446788888863 5544445555442 55 58899999888777744 4 654 33332 2344545443
Q ss_pred CCccEEEEeCCCcccHHHHHHhccCCCc-eEEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLRFARFSNKG-AVLAF 144 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~~~l~~G-gvIV~ 144 (223)
..+|+|| |+.-.. ..+...+..+++| |.+|.
T Consensus 262 ~g~d~vi-d~~G~~-~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSF-ECVGDT-GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEE-ECCCCh-HHHHHHHHhhccCCCEEEE
Confidence 2699765 764321 1233456667787 88875
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.68 E-value=5.8 Score=35.47 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEe-cchHHHhcCCCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIV-RQAEEVMGELKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~-GdA~evL~~L~~fDfVF 118 (223)
++|-=||+ |+.+++++...+...-. .|+-+|++++..+....-+.+. .+...++.. +|- +.+ ..-|+||
T Consensus 3 ~KI~VIGa--G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~---~~aDiVi 75 (307)
T PRK06223 3 KKISIIGA--GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDI---AGSDVVV 75 (307)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHH---CCCCEEE
Confidence 57888998 55556776665543323 8999999998754322213332 011245543 443 333 4689999
Q ss_pred EeCCCcc----------------cHHHHHHhccC-CCceEEEEeC
Q 027409 119 VDCTSKD----------------FARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 119 IDa~K~~----------------Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
+-+.... +.++++.+... +++-+|++-|
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9764322 34444444444 4444777777
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=89.27 E-value=5.1 Score=36.20 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=47.4
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce-EEEEe-cchHHHhcCCCCccEEEEeCCC
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV-SEVIV-RQAEEVMGELKGVDFLVVDCTS 123 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~-I~li~-GdA~evL~~L~~fDfVFIDa~K 123 (223)
=||+ |+.+++++++.+..+--..|+-+|++++.++.-..-+.++ .... +++.. +| .+ .+..-|+|++-+..
T Consensus 3 iiGa--G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~---~l~~aDiVIitag~ 76 (300)
T cd00300 3 IIGA--GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YA---DAADADIVVITAGA 76 (300)
T ss_pred EECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HH---HhCCCCEEEEcCCC
Confidence 3676 4567787777665443368999999999876666667766 1112 45553 44 33 44579999998875
Q ss_pred c
Q 027409 124 K 124 (223)
Q Consensus 124 ~ 124 (223)
.
T Consensus 77 p 77 (300)
T cd00300 77 P 77 (300)
T ss_pred C
Confidence 3
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.6 Score=35.16 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=53.5
Q ss_pred CCeEEEE-ccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 42 AKLIVEA-WTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 42 ak~ILEI-GT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
...+|=+ |.+.+.+..++.+|.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+.++ ..+|
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~---~G~~vi~~~~~~~~~~~~~~----~-g~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKA---DGIKVINIVRRKEQVDLLKK----I-GAEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCcEEEECCCccHHHHHHHHhCCCCCc
Confidence 4455544 4443543355556544 36789999999988777765 4 654 444444554545443 2699
Q ss_pred EEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
+|| |+--... ....+..+++||.++.
T Consensus 215 ~vi-d~~g~~~--~~~~~~~l~~~G~~v~ 240 (324)
T cd08291 215 IFF-DAVGGGL--TGQILLAMPYGSTLYV 240 (324)
T ss_pred EEE-ECCCcHH--HHHHHHhhCCCCEEEE
Confidence 776 7653322 2334555677777655
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.9 Score=34.86 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=28.7
Q ss_pred hcCCCeEEEEccCcchH--HHHHHHHHhcCCCCcEEEEEeCCchHHHH
Q 027409 39 GWNAKLIVEAWTHGGPI--TTSIGLAIAARHTCARHVCIVPDERSRLA 84 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys--~Stl~la~A~~~~~g~i~TIE~d~e~~~~ 84 (223)
..++|.|.=.++-.|.+ +.+..||.+....+-++.-||.|+..-..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l 61 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVM 61 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhH
Confidence 44567777666655543 34445555544556689999999866443
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=6.3 Score=36.77 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|-..|+...+++..+=+++ |- ++|.++.....++.+|++.+.. +..+.......++. |..+.++.-
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~~v~~~s--G~--~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~-G~~v~~v~~ 125 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTKGFAFAS--GM--AAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFVDM 125 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCCeEEECC--HH--HHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHc-CCEEEEECC
Confidence 457889999999999998887655555 44 3444443233445677766542 22445555666777 888555543
Q ss_pred chHHHh-cCC-CCccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVM-GEL-KGVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL-~~L-~~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+ ..+ ++-++||+..--.-. ..-++.+ ... +.|.++|+||.+..+
T Consensus 126 ~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 126 TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTP 180 (390)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcc
Confidence 323434 345 367899997532212 1122222 333 568899999986543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=2.9 Score=41.07 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=59.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEe-------------c
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIV-------------R 102 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~-------------G 102 (223)
...+.+||=+|+|. .+-.++..|.+ -|++|+.+|+++++.+.|++. |-. ++... +
T Consensus 162 ~~pg~kVlViGaG~-iGL~Ai~~Ak~---lGA~V~a~D~~~~rle~aesl-----GA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGV-AGLAAIGAAGS---LGAIVRAFDTRPEVAEQVESM-----GAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcH-HHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHc-----CCeEEEeccccccccccchhhhcch
Confidence 34799999999973 22244444433 367899999999999988873 433 22211 1
Q ss_pred chH----HHhcC-CCCccEEEEeCCCcc--cHHHH-H-HhccCCCceEEEEeCC
Q 027409 103 QAE----EVMGE-LKGVDFLVVDCTSKD--FARVL-R-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~----evL~~-L~~fDfVFIDa~K~~--Y~~~f-~-~~~~l~~GgvIV~DNv 147 (223)
+-. +.+.+ +..+|.|+-=+.-.. .+..+ + .+..+++||+||.=-+
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 211 11222 246998865553222 34554 5 5567799998775433
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.51 E-value=4.6 Score=37.16 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=63.0
Q ss_pred eEEEEccCc-chHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec-chHHHhcCC-C--CccEEE
Q 027409 44 LIVEAWTHG-GPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR-QAEEVMGEL-K--GVDFLV 118 (223)
Q Consensus 44 ~ILEIGT~~-Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G-dA~evL~~L-~--~fDfVF 118 (223)
+|+=+|+|. |. .++.+|.. ..-.+|+.+|+++++++.|++.+... .+..... ++.+.+.++ . .+|++|
T Consensus 171 ~V~V~GaGpIGL--la~~~a~~--~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGL--LAIALAKL--LGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHH--HHHHHHHH--cCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 799999962 22 33334332 22368999999999999999865433 0222222 455544443 2 699987
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
-=+. .+..++ .+..+++||.|+.=-+..+.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6554 565665 55777999999987776544
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=5.6 Score=36.95 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|.+.+|-..|+...+....+=+|+|.+ ++.++.+...++.+|++.+.. +..+....+.+++. |..+.++..
T Consensus 47 ~~~p~~~~Le~~lA~l~g~~~~~~~~sG~a----ai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~-G~~v~~v~~ 121 (377)
T PRK07671 47 TGNPTRAALEELIAVLEGGHAGFAFGSGMA----AITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRF-GIEHTFVDT 121 (377)
T ss_pred CCChHHHHHHHHHHHHhCCCceEEeCCHHH----HHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcC-CeEEEEECC
Confidence 568889999999999998888766666533 333333334456677766542 22445555566677 888666654
Q ss_pred -chHHHhcCC-CCccEEEEeCCCccc--HHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDCTSKDF--ARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa~K~~Y--~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...+ ++-.+||+..--.-+ ..-++.+ ... +.|..+|+||++..+
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 344443445 367899986422112 2222333 333 678999999997543
|
|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.87 Score=39.27 Aligned_cols=70 Identities=27% Similarity=0.193 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++-..+-+..++-.+|+|||+-=. ..+..|...+..++++++.|..++.... +.+ --.+.||+.|+|++
T Consensus 154 ~~~~~~~~~~~~dl~lvlGTsl~v-~p~~~l~~~~~~~~~~~i~iN~~~~~~~------~~~----~~~i~g~~~~~l~~ 222 (224)
T cd01412 154 ALLEAVEALAKADLFLVIGTSGVV-YPAAGLPEEAKERGARVIEINPEPTPLS------PIA----DFAFRGKAGEVLPA 222 (224)
T ss_pred HHHHHHHHHHcCCEEEEECcCccc-hhHHHHHHHHHHCCCeEEEECCCCCCCC------CcC----CEEEECCHHHHHHH
Confidence 566677777899999999997221 1222333323346889999999877654 222 24677999999986
Q ss_pred C
Q 027409 111 L 111 (223)
Q Consensus 111 L 111 (223)
|
T Consensus 223 l 223 (224)
T cd01412 223 L 223 (224)
T ss_pred h
Confidence 4
|
coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.21 E-value=3.4 Score=37.24 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=56.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec---chHHHhcCC---
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR---QAEEVMGEL--- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G---dA~evL~~L--- 111 (223)
..-++||=+|+ .+.+..++.+|.+. +.+|+.++.++++.+.|++ . |.. |....- +..+.+.++
T Consensus 165 ~~g~~VlV~G~-G~vG~~a~~~a~~~---G~~vi~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 165 KKGDLVIVIGA-GGVGGYMVQTAKAM---GAAVVAIDIDPEKLEMMKG----F-GADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHH----h-CCceEecCccccHHHHHHHHHhhccc
Confidence 34578999998 45444555665542 5689999999998877754 3 544 332222 233444443
Q ss_pred CCccE---EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 112 KGVDF---LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 112 ~~fDf---VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
..+|. +++|+.-. ...++ .+..+++||.++.
T Consensus 236 ~g~d~~~d~v~d~~g~--~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 236 RGLRSTGWKIFECSGS--KPGQESALSLLSHGGTLVV 270 (349)
T ss_pred CCCCCCcCEEEECCCC--hHHHHHHHHHHhcCCeEEE
Confidence 24662 67788743 33444 4566677887764
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.4 Score=38.01 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=51.4
Q ss_pred EEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhh---cCceEEEEe-cchHHHhcCCCCccEEEEeC
Q 027409 47 EAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDV---VGWVSEVIV-RQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a---~G~~I~li~-GdA~evL~~L~~fDfVFIDa 121 (223)
-||+ |+.+++++...+...-. .|+-+|+|++.. .+... +.++ .+...++.. +| .+. +..-|+|++=+
T Consensus 3 IIGa--G~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d-~~~---l~dADiVIit~ 74 (300)
T cd01339 3 IIGA--GNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTND-YED---IAGSDVVVITA 74 (300)
T ss_pred EECC--CHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCC-HHH---hCCCCEEEEec
Confidence 4676 66677877766544333 899999998854 33322 3332 012245543 55 333 45689999955
Q ss_pred CC-------------cc---cHHHHHHhccC-CCceEEEEeC
Q 027409 122 TS-------------KD---FARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 122 ~K-------------~~---Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
.. ++ +.++++.+... +++-+|++-|
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 31 12 23444444444 5666577777
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=8.4 Score=36.20 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-+|.+.+|-..|++..+++..|=.++|... ...++. +...++.+|++.+ .....+....+.++.. |..+.++..
T Consensus 67 ~~~p~~~~le~~lA~l~g~~~al~~~sG~~A--i~~~l~-all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~-G~~v~~vd~ 142 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGAEACFATASGMSA--VFTALG-ALLGAGDRLVAARSLFGSCFVVCNEILPRW-GVETVFVDG 142 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECChHHH--HHHHHH-HHhCCCCEEEEccCCcchHHHHHHHHHHHc-CcEEEEECC
Confidence 4578889999999999999998877775432 222221 2344566777665 2334456666667777 988666655
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHH--HHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFAR--VLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~--~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ + +.-++|++..--..... -++.+ ... +.|.++|+||++..+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 43343443 4 35789998653222222 23333 333 568899999997644
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=8.3 Score=36.31 Aligned_cols=113 Identities=5% Similarity=0.036 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC--------chHHHHHHHHHHhhcCce-----
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD--------ERSRLAYVKAMYDVVGWV----- 96 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d--------~e~~~~Ar~~~~~a~G~~----- 96 (223)
...|..++....|++|+=||. |+ .++-+|......+.+|+-++.. ++..+..++.+++. |+.
T Consensus 136 ~~~l~~~l~~~~~~~vvViGg--G~--ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~-gI~i~~~~ 210 (438)
T PRK13512 136 TDAIDQFIKANQVDKALVVGA--GY--ISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR-EIPYRLNE 210 (438)
T ss_pred HHHHHHHHhhcCCCEEEEECC--CH--HHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhc-CCEEEECC
Confidence 444444444457899999995 66 5666665555556678888764 34455666777777 765
Q ss_pred -EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHHhcc-CCCceEEEEeCCC
Q 027409 97 -SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFARF-SNKGAVLAFKNAF 148 (223)
Q Consensus 97 -I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV~DNvl 148 (223)
|+=+.++... +.+- -.+|+|++=..-.-..++++...+ +.++|.|.+|.-+
T Consensus 211 ~v~~i~~~~v~-~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 211 EIDAINGNEVT-FKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred eEEEEeCCEEE-ECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 2222232111 1111 159999987765544566765532 3444555556544
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=87.50 E-value=3.6 Score=38.80 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..+=..|+.+-++..++=..||-+- .+.++. +...++.+|+... .........++.+.+. |+.+++...
T Consensus 52 ~gnPt~~~le~~la~Le~g~~a~~~~SGmaA--i~~~l~-~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~-gv~v~~~d~ 127 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGGEDALLFSSGMAA--ISAALL-ALLKPGDHIVASDDLYGGTYRLLEELLPRF-GVEVTFVDP 127 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT-SEEEEESSHHHH--HHHHHH-HHS-TTBEEEEESSSSHHHHHHHHHCHHHT-TSEEEEEST
T ss_pred cccccHHHHHHHHHHhhcccceeeccchHHH--HHHHHH-hhcccCCceEecCCccCcchhhhhhhhccc-CcEEEEeCc
Confidence 5689899999999999999999888765443 322222 3345566766554 4666777777777887 998888876
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHHHH--HHh-ccC-CCc-eEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFARVL--RFA-RFS-NKG-AVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~~f--~~~-~~l-~~G-gvIV~DNvl~~g 151 (223)
+-.+.|.. + ++-++||+..--.--.+.. +.+ +.. +.| .++|+||.|...
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 54554543 4 3799999997433333333 333 333 566 999999987533
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=87.46 E-value=4.2 Score=37.37 Aligned_cols=76 Identities=13% Similarity=-0.059 Sum_probs=47.2
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc-hHHHhcCC---
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ-AEEVMGEL--- 111 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd-A~evL~~L--- 111 (223)
+...-.+||-+|++. .+..++.+|.+. + ++++.++.++++.+.+++.+ +.. +.....+ ..+.+..+
T Consensus 181 ~~~~g~~VlV~g~G~-vG~~~~~la~~~---g~~~vi~~~~~~~~~~~~~~~~----~~~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 181 EVKPGDTVAVWGCGP-VGLFAARSAKLL---GAERVIAIDRVPERLEMARSHL----GAETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred cCCCCCEEEEECCCH-HHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHcC----CcEEEcCCcchHHHHHHHHHcCC
Confidence 344557899999753 333566676553 3 46999999999988888753 223 4444443 44444433
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
..+|+| +|+-
T Consensus 253 ~~~D~v-ld~v 262 (386)
T cd08283 253 RGPDVC-IDAV 262 (386)
T ss_pred CCCCEE-EECC
Confidence 269966 5664
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.27 E-value=3 Score=40.99 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe---------------c
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV---------------R 102 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~---------------G 102 (223)
...+.++|=+|+| . .++..+..+..-++.|+.+|.++++.+.+++ . |.. +++-. .
T Consensus 161 ~vp~akVlViGaG--~--iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----l-Ga~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGAG--V--AGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----M-GAEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECCC--H--HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c-CCeEEeccccccccccccceeecCH
Confidence 3567899999985 3 2222222223346788899999998777665 3 444 22211 1
Q ss_pred chH----HHhcC-CCCccEEEEeCC---CcccHHHH--HHhccCCCceEEE
Q 027409 103 QAE----EVMGE-LKGVDFLVVDCT---SKDFARVL--RFARFSNKGAVLA 143 (223)
Q Consensus 103 dA~----evL~~-L~~fDfVFIDa~---K~~Y~~~f--~~~~~l~~GgvIV 143 (223)
+-. +.+++ +..+|+| |.+. -...+.+. +.+..+++|++||
T Consensus 232 ~~~~~~~~~~~e~~~~~DIV-I~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDII-ITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEE-EECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 111 12333 3579999 5554 22344444 3556779998866
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=87.23 E-value=4.5 Score=38.63 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCeEEEEc-cCcchHHHHHHHHHhcC--CCCcEEEEEeCCchHHHHHHHHHH----hhcCceEEEEe--cchHHHhcCCC
Q 027409 42 AKLIVEAW-THGGPITTSIGLAIAAR--HTCARHVCIVPDERSRLAYVKAMY----DVVGWVSEVIV--RQAEEVMGELK 112 (223)
Q Consensus 42 ak~ILEIG-T~~Gys~Stl~la~A~~--~~~g~i~TIE~d~e~~~~Ar~~~~----~a~G~~I~li~--GdA~evL~~L~ 112 (223)
.+.|+=+| ||+|=++++..||.+.. ..+.+|.-|+.|+.+.. |.+.+. .. |+.+.... .+..+.|.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~-a~eqL~~~a~~~-~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIG-AVEQLKTYAKIM-GIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHH-HHHHHHHHHHHh-CCceEccCCHHhHHHHHHHhC
Confidence 34677788 56665333334443332 22347877888876542 223333 33 65532221 22234556666
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
.+|+||||..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 8999999965
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.98 E-value=5.3 Score=35.75 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=56.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
.-++||=.|+ .+.+..++.+|.+. +.+ |+.++.++++.+.+++ . |.. +.....+..++...+ ..+|
T Consensus 160 ~g~~vlV~G~-g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 160 EGKNVIIIGA-GTIGLLAIQCAVAL---GAKSVTAIDINSEKLALAKS----L-GAMQTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCceEecCcccCHHHHHHHhcCCCCC
Confidence 4568888886 34544455555442 554 7889999988776643 3 543 333333322333223 2688
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
-+++|+.-. ...++ .+..+++||.++.=-+
T Consensus 231 ~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 231 QLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred eEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 788998643 23443 5567788888875443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=86.90 E-value=5.7 Score=35.81 Aligned_cols=92 Identities=8% Similarity=-0.075 Sum_probs=52.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC---CchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP---DERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~---d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDf 116 (223)
.-++||=+|++ |.+..++.+|++. +.+++.++. ++++.+.|+ +. |.. |.....+..+ ......+|.
T Consensus 172 ~g~~vlI~G~G-~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~~----~~-Ga~~v~~~~~~~~~-~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAG-PIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIVE----EL-GATYVNSSKTPVAE-VKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHH----Hc-CCEEecCCccchhh-hhhcCCCCE
Confidence 45789988863 5544555666543 568888887 566655554 44 665 3322223222 222247996
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|| |+--. ...++ .+..+++||.++.=
T Consensus 242 vi-d~~g~--~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 II-EATGV--PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred EE-ECcCC--HHHHHHHHHHccCCcEEEEE
Confidence 54 56432 22444 56777888888753
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=86.89 E-value=6.3 Score=34.79 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec---chHHHhcCC-C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR---QAEEVMGEL-K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G---dA~evL~~L-~ 112 (223)
...-++||=.|.+.+.+..++.+|.+. +.+++.+-.+++..+..++.+.+. |.. +..... +..+.+..+ .
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~ 219 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKLL---GIKTINVVRDRPDLEELKERLKAL-GADHVLTEEELRSLLATELLKSAPG 219 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHHc---CCeEEEEEcCCCcchhHHHHHHhc-CCCEEEeCcccccccHHHHHHHHcC
Confidence 345577887776444433666666543 556555544442223333444445 665 332222 344444443 2
Q ss_pred -CccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 113 -GVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 113 -~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+|+|| |+.-... ..+.++.++++|.++.
T Consensus 220 ~~~d~vl-d~~g~~~--~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 220 GRPKLAL-NCVGGKS--ATELARLLSPGGTMVT 249 (341)
T ss_pred CCceEEE-ECcCcHh--HHHHHHHhCCCCEEEE
Confidence 699887 8765533 3345566677777663
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.79 E-value=5.6 Score=34.70 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
-++||=+|++ +.+..++.+|++. +.+ |+.++.++++.+.|++ . |.. +.. .+..+.+.++ ..+|
T Consensus 121 g~~VlV~G~G-~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~--~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAG-MLGLTAAAAAAAA---GAARVVAADPSPDRRELALS----F-GATALAEP--EVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----c-CCcEecCc--hhhHHHHHHHhCCCCCC
Confidence 4588888864 5544555555442 554 8888999988877765 3 544 221 1122323322 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.|| |+--. ...++ .+..+++||.++.=-++
T Consensus 190 ~vi-d~~G~--~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 190 VAL-EFSGA--TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred EEE-ECCCC--hHHHHHHHHHhcCCCEEEEeccC
Confidence 875 66422 22343 45666778877754433
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=86.75 E-value=1.7 Score=35.29 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcccHHH
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARV 129 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~ 129 (223)
.|=+..++.||.+....|-++.-||.|+........ +. . .. ....-.+.+..+ ..||+|++|+........
T Consensus 11 ~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~-~~-~--~~---~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~ 83 (169)
T cd02037 11 VGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM-WR-G--PM---KMGAIKQFLTDVDWGELDYLVIDMPPGTGDEH 83 (169)
T ss_pred CChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH-Hh-C--cc---hHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHH
Confidence 344445556665555556689999999886432221 11 1 10 001111233433 479999999988765544
Q ss_pred HHHh
Q 027409 130 LRFA 133 (223)
Q Consensus 130 f~~~ 133 (223)
+...
T Consensus 84 ~~~~ 87 (169)
T cd02037 84 LTLA 87 (169)
T ss_pred HHHH
Confidence 4433
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.3 Score=39.31 Aligned_cols=69 Identities=28% Similarity=0.389 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-h--cC-ce--EEEEecchHHHhcCC------CCccEEEE
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-V--VG-WV--SEVIVRQAEEVMGEL------KGVDFLVV 119 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a--~G-~~--I~li~GdA~evL~~L------~~fDfVFI 119 (223)
.|=+++.++||-+....|++|+=||-||.+--. .|.+ + -| +. +++...+=...|... ..|||||+
T Consensus 13 aGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~---~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vlv 89 (231)
T PF07015_consen 13 AGKTTAAMALASELAARGARVALIDADPNQPLA---KWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLV 89 (231)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH---HHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEE
Confidence 455455566665555668899999999885433 2322 2 02 22 566555444444332 26999999
Q ss_pred eCCC
Q 027409 120 DCTS 123 (223)
Q Consensus 120 Da~K 123 (223)
|-.-
T Consensus 90 DleG 93 (231)
T PF07015_consen 90 DLEG 93 (231)
T ss_pred eCCC
Confidence 9753
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.60 E-value=3.9 Score=34.15 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=52.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------c
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------G 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~ 109 (223)
...++||=.|.+.| .+..++... ...+.+|+.+.++++....+.+.+... +..++++.+|..+ .+ .
T Consensus 4 ~~~~~ilItGasg~-iG~~l~~~l--~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARG-IGRAIAVRL--AADGAEVIVVDICGDDAAATAELVEAA-GGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCc-HHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678998887644 445544433 334678999999988777766667665 5557777777642 12 2
Q ss_pred CCCCccEEEEeCCC
Q 027409 110 ELKGVDFLVVDCTS 123 (223)
Q Consensus 110 ~L~~fDfVFIDa~K 123 (223)
.++++|.||.-+..
T Consensus 80 ~~~~~d~vi~~ag~ 93 (251)
T PRK12826 80 DFGRLDILVANAGI 93 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 22468988877643
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=11 Score=35.79 Aligned_cols=123 Identities=8% Similarity=0.028 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+..+=..++.+-+...-+=+.+ |- +++.++. +...+|.+|++.+.. .......++.+++. |..++++.
T Consensus 61 ~gnPt~~~Le~~la~le~~~~~v~~sS--G~--aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~-Gi~v~~vd 135 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGSAGTILVPS--GL--AAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRL-GVEVEYYD 135 (395)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEECc--HH--HHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhc-CeEEEEeC
Confidence 567777777777777776666665655 43 3332222 335566777776443 33344455667777 98877775
Q ss_pred cchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+..+.+.+ + +.-.+|++.. +.-....-++.+ ... +.|.++|+||++...
T Consensus 136 ~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p 191 (395)
T PRK05967 136 PEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATP 191 (395)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCc
Confidence 443454554 3 3578999995 333334444444 333 678999999997543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.25 E-value=7.8 Score=34.94 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=53.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
.-.+||=+|+| |.+..++.+|.... .+.+|+.++.++++.+.|++ + |... .+ .+ .-..+ .+|.|| |
T Consensus 163 ~g~~VlV~G~G-~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~----~-~~~~-~~-~~---~~~~~-g~d~vi-D 228 (341)
T cd08237 163 DRNVIGVWGDG-NLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF----A-DETY-LI-DD---IPEDL-AVDHAF-E 228 (341)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh----c-Ccee-eh-hh---hhhcc-CCcEEE-E
Confidence 34689988863 54223344443222 23579999999999888875 4 4421 11 11 11111 589776 7
Q ss_pred CCCcc-cHHHHH-HhccCCCceEEEEe
Q 027409 121 CTSKD-FARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 121 a~K~~-Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+--.. ....++ .++.+++||.++.=
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 65432 344554 56778999988753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=8.6 Score=33.83 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=55.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
....+||=.|++.+.+..++.+|.+. +.+++.+..++++.+.+++. ... -+... +..+.+.++..+|++|
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~---g~~vi~~~~~~~~~~~~~~~-~~~---~~~~~--~~~~~v~~~~~~d~~l- 230 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKAL---GAKVIAVTSSESKAKIVSKY-ADY---VIVGS--KFSEEVKKIGGADIVI- 230 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHH-HHH---hcCch--hHHHHHHhcCCCcEEE-
Confidence 34567888888545444666666543 67899999999998888765 322 11111 3333344445689877
Q ss_pred eCCCcccHHHHHHhccCCCceEEE
Q 027409 120 DCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 120 Da~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
|+-.. ...-..++.+++||.++
T Consensus 231 d~~g~--~~~~~~~~~l~~~G~~v 252 (334)
T PRK13771 231 ETVGT--PTLEESLRSLNMGGKII 252 (334)
T ss_pred EcCCh--HHHHHHHHHHhcCCEEE
Confidence 87543 23334556676777655
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.16 E-value=13 Score=33.99 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=52.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfV 117 (223)
..+++|.=||+ |-.+++++++.+..+--..|+=+|++++.++.-.--+.++..+ . +.+..+| .+- +..-|+|
T Consensus 4 ~~~~ki~iiGa--G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~-~~~---~~~adiv 77 (315)
T PRK00066 4 KQHNKVVLVGD--GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD-YSD---CKDADLV 77 (315)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC-HHH---hCCCCEE
Confidence 35679999997 4457788877665443347999999988766555556665122 2 6666555 333 4579999
Q ss_pred EEeCCC
Q 027409 118 VVDCTS 123 (223)
Q Consensus 118 FIDa~K 123 (223)
+|-|..
T Consensus 78 Iitag~ 83 (315)
T PRK00066 78 VITAGA 83 (315)
T ss_pred EEecCC
Confidence 998865
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=85.93 E-value=3.3 Score=30.15 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred EEEEccCcchHHHHHHHHHhcCCCC---cEEEEE-eCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 45 IVEAWTHGGPITTSIGLAIAARHTC---ARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 45 ILEIGT~~Gys~Stl~la~A~~~~~---g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
|-=||+| --+++|..... ..+ .+|+-+ ++++++.+..+ ++. +. ++...+..|++. .-|+||+=
T Consensus 2 I~iIG~G--~mg~al~~~l~--~~g~~~~~v~~~~~r~~~~~~~~~---~~~-~~--~~~~~~~~~~~~---~advvila 68 (96)
T PF03807_consen 2 IGIIGAG--NMGSALARGLL--ASGIKPHEVIIVSSRSPEKAAELA---KEY-GV--QATADDNEEAAQ---EADVVILA 68 (96)
T ss_dssp EEEESTS--HHHHHHHHHHH--HTTS-GGEEEEEEESSHHHHHHHH---HHC-TT--EEESEEHHHHHH---HTSEEEE-
T ss_pred EEEECCC--HHHHHHHHHHH--HCCCCceeEEeeccCcHHHHHHHH---Hhh-cc--ccccCChHHhhc---cCCEEEEE
Confidence 4446665 33455443332 333 678844 99998765544 333 43 455567777776 68999999
Q ss_pred CCCcccHHHHHHhccCCCceEEEE
Q 027409 121 CTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 121 a~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
....++.+.++.+....++.+||.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 999999999987744577777764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.67 E-value=6.4 Score=36.42 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc---------------------hHHHHHHHHHHhhcCce--E
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE---------------------RSRLAYVKAMYDVVGWV--S 97 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~---------------------e~~~~Ar~~~~~a~G~~--I 97 (223)
+.++||=||+| |. +|.++..++... =|+|+=+|.|. .+.+.|++.+++. +-. |
T Consensus 23 ~~~~VlIiG~G-gl-Gs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i 98 (338)
T PRK12475 23 REKHVLIVGAG-AL-GAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEI 98 (338)
T ss_pred cCCcEEEECCC-HH-HHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEE
Confidence 45679999998 43 455555444332 26898899884 3678888888877 443 7
Q ss_pred EEEecchH-HHhcCC-CCccEEEEeCC
Q 027409 98 EVIVRQAE-EVMGEL-KGVDFLVVDCT 122 (223)
Q Consensus 98 ~li~GdA~-evL~~L-~~fDfVFIDa~ 122 (223)
+.+..+.. +.+.++ +.+|+|+.=.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATD 125 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCC
Confidence 77777653 334443 67997654334
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=4.9 Score=33.98 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
..|+||=.|.+.| .++.++...+ ..+.+|+.+.++++..+.+.+.+++. +-.+.++.+|..+ .+.+
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFA--REGAKVVVADRDAAGGEETVALIREA-GGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999998766 3555544333 34678999999999888888888776 6557888887742 1221
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-+.
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 246798887654
|
|
| >PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.4 Score=30.09 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+||=+ |+.|.++|++. + ...++.+++. |+++++...+..++-.....+|+||.=.
T Consensus 4 kILvv-CgsG~~TS~m~-~--------------------~ki~~~l~~~-gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KIIVA-CGGAVATSTMA-A--------------------EEIKELCQSH-NIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEEEE-CCCchhHHHHH-H--------------------HHHHHHHHHC-CCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 67766 88887555432 2 2345677777 8888888878776533346789998765
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=85.50 E-value=9.3 Score=33.54 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=45.3
Q ss_pred EEccCcchHHHHHHHHHhcCC--CCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEe-cchHHHhcCCCCccEEEEeC
Q 027409 47 EAWTHGGPITTSIGLAIAARH--TCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIV-RQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 47 EIGT~~Gys~Stl~la~A~~~--~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~-GdA~evL~~L~~fDfVFIDa 121 (223)
=||+| |.-+++++...+..+ ...+|+-+|+++++++.....++++... ..++.. .|..+.+ ..-|||++=+
T Consensus 3 IIGag-G~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~---~~aDiVv~t~ 78 (263)
T cd00650 3 VIGAG-GNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF---KDADVVIITA 78 (263)
T ss_pred EECCC-ChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh---CCCCEEEECC
Confidence 36763 223456666555443 3368999999999988888888766111 234433 3333444 4699999966
Q ss_pred CC
Q 027409 122 TS 123 (223)
Q Consensus 122 ~K 123 (223)
.+
T Consensus 79 ~~ 80 (263)
T cd00650 79 GV 80 (263)
T ss_pred CC
Confidence 55
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=2 Score=35.42 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce-EEEEe-cch-HHHhcCC-CCccEEEEeCCCc
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV-SEVIV-RQA-EEVMGEL-KGVDFLVVDCTSK 124 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~-I~li~-GdA-~evL~~L-~~fDfVFIDa~K~ 124 (223)
+|=++++..||.+....+-++.-||.|++.- +...+... -+.. +..+. ++. .+.|.++ ..||+|+||+...
T Consensus 12 vGKTT~a~~la~~la~~g~~vlliD~D~q~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~~ 87 (211)
T PHA02518 12 AGKTTVATNLASWLHADGHKVLLVDLDPQGS--STDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDGAPQ 87 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--hHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeCCCC
Confidence 3443444455544444566899999998742 22222221 0111 22211 121 2344444 4799999999765
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=85.39 E-value=17 Score=32.76 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=49.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc---CceEEEEecchHHHhcCCCCccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV---GWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~---G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
++|.=||+| ..+++++.+.+.......|+-+|++++..+....-+.++. +..+.+..++..+ +...|+|++
T Consensus 1 ~kI~IIGaG--~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAG--HVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----CKDADIVVI 74 (306)
T ss_pred CEEEEECCC--HHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----hCCCCEEEE
Confidence 367889984 4567777766544322489999999998776666666541 1125555555432 357999999
Q ss_pred eCCC
Q 027409 120 DCTS 123 (223)
Q Consensus 120 Da~K 123 (223)
=+..
T Consensus 75 tag~ 78 (306)
T cd05291 75 TAGA 78 (306)
T ss_pred ccCC
Confidence 8765
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=85.30 E-value=7.3 Score=37.31 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHH
Q 027409 32 LLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEE 106 (223)
Q Consensus 32 fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~e 106 (223)
.+..+.+.. .=++|+=+|+| ..+..++. .++..|++|+-+|+|+.+.+.|++ . |.. +. ..+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G--~IG~~va~--~ak~~Ga~ViV~d~d~~R~~~A~~----~-G~~~~~-----~~e 253 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYG--DVGKGCAQ--SLRGQGARVIVTEVDPICALQAAM----E-GYEVMT-----MEE 253 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCC--HHHHHHHH--HHHHCCCEEEEEECChhhHHHHHh----c-CCEEcc-----HHH
Confidence 344455543 45799999986 34444443 334457788889999999888865 4 665 21 123
Q ss_pred HhcCCCCccEEEEeCCCcccHHHHH--HhccCCCceEEEE
Q 027409 107 VMGELKGVDFLVVDCTSKDFARVLR--FARFSNKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y~~~f~--~~~~l~~GgvIV~ 144 (223)
.+ ...|+|| ||.- -...+. .+..+++||+|+.
T Consensus 254 ~v---~~aDVVI-~atG--~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 254 AV---KEGDIFV-TTTG--NKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred HH---cCCCEEE-ECCC--CHHHHHHHHHhcCCCCcEEEE
Confidence 33 3578775 5642 344565 3566799998863
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.6 Score=36.96 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=55.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc---CceEEEEe----cchHHHhcCC---C
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV---GWVSEVIV----RQAEEVMGEL---K 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~---G~~I~li~----GdA~evL~~L---~ 112 (223)
.+||=+|.+.+.+..++.+|++......+|+.++.++++.+.|++.+.... |....++. .+..+.+.++ .
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 688888855455445556665431111379999999999999998754220 22212222 2334444443 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCC-ceEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNK-GAVLA 143 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~-GgvIV 143 (223)
.+|.||..... ...+. .++.+++ |++++
T Consensus 257 g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 257 GFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 69988875432 23443 4566654 44544
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=84.53 E-value=2.7 Score=37.73 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=40.3
Q ss_pred CCCeEEEEc-cCcchHHHHHHHHHhcCCC-C-cEEEEEeCCchHHHHHHHHH---HhhcCceEEEEec--chHHHhcCCC
Q 027409 41 NAKLIVEAW-THGGPITTSIGLAIAARHT-C-ARHVCIVPDERSRLAYVKAM---YDVVGWVSEVIVR--QAEEVMGELK 112 (223)
Q Consensus 41 ~ak~ILEIG-T~~Gys~Stl~la~A~~~~-~-g~i~TIE~d~e~~~~Ar~~~---~~a~G~~I~li~G--dA~evL~~L~ 112 (223)
+++.|+=+| ||.|=+++...||...... + -+|.-|..|+.+. .|.+.+ .+..|+.+..... +..+.|..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~-~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI-GAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch-hHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 345666777 5555433333444333222 2 3566666666543 222332 2222555332221 2234566666
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
.+|+||||..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 7999999974
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=16 Score=33.37 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=59.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhh---cCceEEEEe-cchHHHhcCCCCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDV---VGWVSEVIV-RQAEEVMGELKGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a---~G~~I~li~-GdA~evL~~L~~f 114 (223)
.+.++|.=||.|. .++++++..+...- +.|+=+|++++..+ +... +..+ .+...++.. +| .+.+ ..-
T Consensus 3 ~~~~KI~IIGaG~--vG~~ia~~l~~~~~-~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d-~~~l---~~A 74 (319)
T PTZ00117 3 VKRKKISMIGAGQ--IGSTVALLILQKNL-GDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNN-YEDI---KDS 74 (319)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHHHCCC-CeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCC-HHHh---CCC
Confidence 3567899999754 34567766554432 67999999988754 3332 3332 122245543 44 3333 468
Q ss_pred cEEEEeCCCcccH----------------HHHHHhccCCCce-EEEEeC
Q 027409 115 DFLVVDCTSKDFA----------------RVLRFARFSNKGA-VLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~----------------~~f~~~~~l~~Gg-vIV~DN 146 (223)
|||++-+.....+ ++.+.+....|.+ +|++-|
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999766655 4444444445555 777777
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=84.45 E-value=11 Score=35.22 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+.+|=..|++..+++..+= ++.|. +++.++. +...++.+|++.+..- ......+...... |..+.++.
T Consensus 56 ~~~p~~~~le~~lA~l~g~~~av~--~~sG~--~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~~~~vd 130 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLEGTEAAVA--TSSGM--GAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF-GIQVDFIN 130 (391)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcC-CeEEEEEC
Confidence 567889999999999999998654 44455 3443332 3345566777765422 2344455556666 87766655
Q ss_pred cchHH-HhcCC-CCccEEEEeCCCcccHHH--HHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEE-VMGEL-KGVDFLVVDCTSKDFARV--LRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~e-vL~~L-~~fDfVFIDa~K~~Y~~~--f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+ +...+ ++-.+||+..--.-.-.. ++.+ ... +.|..+|.||.+..+
T Consensus 131 ~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~ 186 (391)
T TIGR01328 131 MAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP 186 (391)
T ss_pred CCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchh
Confidence 54333 33334 367899987532111111 2322 333 568899999997543
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.1 Score=42.71 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
|++.-..=|..+++.--.+-+|+.+=++.|- +|..+| +.+.+.|+|...|++.++.+.-++.+..+ |.+ ++..+|
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~--KTsH~a-~i~~n~gki~afe~d~~r~~tl~~~l~~a-g~~~~~~~~~ 271 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGN--KTSHLA-AIMRNQGKIYAFERDAKRAATLRKLLKIA-GVSIVESVEG 271 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeecccccc--chhhHH-HHhhccCCcchhhhhhHHHHHHHHHHHHc-CCCccccccc
Confidence 3443344455666666677889999888888 666776 45667899999999999999999999999 999 888899
Q ss_pred chHHH-hcC-CCCccEEEEeC
Q 027409 103 QAEEV-MGE-LKGVDFLVVDC 121 (223)
Q Consensus 103 dA~ev-L~~-L~~fDfVFIDa 121 (223)
|.+.+ .+. +...-.+++|-
T Consensus 272 df~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDP 292 (413)
T ss_pred cccCCCCcccccceeEEEeCC
Confidence 99885 221 24566677763
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=84.29 E-value=17 Score=33.58 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|...+|-..+++.. +..++=+++|. +++.++. +...++.+|++.+..- .....++..+++. |..+.++.
T Consensus 48 y~~p~~~~Le~~lA~l~-~~~~v~~~sG~----~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~-G~~v~~v~ 121 (366)
T PRK07582 48 ASNPTWRALEAALGELE-GAEALVFPSGM----AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPL-GVTVREAP 121 (366)
T ss_pred CCCccHHHHHHHHHHHc-CCCEEEECCHH----HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcC-eEEEEEEC
Confidence 34678888888899888 56666666653 3333322 3345567888876543 4445566667777 88855554
Q ss_pred cc-hHHHhcCCCCccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCC
Q 027409 102 RQ-AEEVMGELKGVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 102 Gd-A~evL~~L~~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~ 149 (223)
-+ ..+ ..+...++||+..-. .....-++.+ ... +.|.++|+||.+.
T Consensus 122 ~~~~~~--~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 122 TAGMAE--AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred CCChHH--HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence 33 222 112467899987422 1112123322 333 5689999999864
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.15 E-value=6.9 Score=35.81 Aligned_cols=95 Identities=22% Similarity=0.142 Sum_probs=58.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--G 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~ 113 (223)
+..-++||=.|-+.|++..++.||++. +++++.+-..++..+.+ ++. |-. |+....|-.+.+.++ + .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~k~~~~----~~l-GAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSSSEKLELL----KEL-GADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc---CCcEEEEecCHHHHHHH----Hhc-CCCEEEcCCcccHHHHHHHHcCCCC
Confidence 445689999998889988888888764 32444444444433344 444 554 788888888888766 2 6
Q ss_pred ccEEEEeCCCc-ccHHHHHHhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSK-DFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~-~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+|+|| |.--. .+.+ .+..+++||.++.=
T Consensus 212 vDvv~-D~vG~~~~~~---~l~~l~~~G~lv~i 240 (326)
T COG0604 212 VDVVL-DTVGGDTFAA---SLAALAPGGRLVSI 240 (326)
T ss_pred ceEEE-ECCCHHHHHH---HHHHhccCCEEEEE
Confidence 99987 44332 2222 34455445555543
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=9.1 Score=32.39 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
.-|.+|=.|.+.|. +..++...+ ..+.+|+-+.++++..+...+.++.. |..+.++..|..+ +..+
T Consensus 5 ~~k~~lItGas~gi-G~~ia~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSGI-GRAAAKLFA--REGAKVVVGARRQAELDQLVAEIRAE-GGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35789989988663 455544433 34678999999998888887778776 6556677776422 2223
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
.++.|.++.-|.
T Consensus 81 ~~~id~li~~ag 92 (254)
T PRK07478 81 FGGLDIAFNNAG 92 (254)
T ss_pred cCCCCEEEECCC
Confidence 347899887764
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.04 E-value=9.9 Score=34.84 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=53.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC-C-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL-K- 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L-~- 112 (223)
..-++||=+|++ +.+..++.+|++ .++ +|+.++.++++.+.|++ . |.. |.... .+..+.+.++ .
T Consensus 197 ~~g~~VlV~G~G-~vG~~a~q~ak~---~G~~~Vi~~~~~~~r~~~a~~----~-Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGLG-AVGLAVAEGARA---RGASKIIGVDINPEKFEKGKE----M-GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---CCCCcEEEEcCChHHHHHHHH----c-CCcEEEecccccchHHHHHHHHhCC
Confidence 345689999863 554455555543 355 69999999998888865 4 654 33222 1233444443 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
.+|+| +|+.-.. ..++ .+..+++| |.++.
T Consensus 268 g~dvv-id~~G~~--~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 268 GVDYS-FECAGNV--EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCEE-EECCCCh--HHHHHHHHhhhcCCCEEEE
Confidence 69965 6665322 2343 44555564 65544
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=83.98 E-value=17 Score=31.62 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
-++||=+|.+.+.+..++.+|.+ -+.+++++..++++.+.++ +. |.. +.. ..+..+.+..+ ..+|.|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~---~g~~v~~~~~~~~~~~~~~----~~-g~~~v~~~-~~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAK---LGYEVVASTGKADAADYLK----KL-GAKEVIPR-EELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCeEEEEecCHHHHHHHH----Hc-CCCEEEcc-hhHHHHHHHhhccCCcCEE
Confidence 35898899866654344455543 3678999999888765554 34 654 221 11122333333 368976
Q ss_pred EEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 118 VVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
| |+.... ..-+.+..++++|.++.
T Consensus 218 l-d~~g~~--~~~~~~~~l~~~G~~i~ 241 (326)
T cd08289 218 V-DPVGGK--TLAYLLSTLQYGGSVAV 241 (326)
T ss_pred E-ECCcHH--HHHHHHHHhhcCCEEEE
Confidence 5 886542 22235566677777654
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=83.96 E-value=7.4 Score=29.49 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
+.++||=+ |+.|.| |++ ++. ..++..++. |+++++...+..++-..+..||+|++=
T Consensus 2 ~~~~ILl~-C~~G~s-SS~-l~~--------------------k~~~~~~~~-gi~~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 2 NETNILLL-CAAGMS-TSL-LVN--------------------KMNKAAEEY-GVPVKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred CccEEEEE-CCCchh-HHH-HHH--------------------HHHHHHHHC-CCcEEEEEecHHHHHhhcCCCCEEEEC
Confidence 45788866 999975 443 332 125566777 998888888888865455689999997
Q ss_pred CCCcccHHHH
Q 027409 121 CTSKDFARVL 130 (223)
Q Consensus 121 a~K~~Y~~~f 130 (223)
..=..+.+-+
T Consensus 58 pqi~~~~~~i 67 (95)
T TIGR00853 58 PQVAYMLPDL 67 (95)
T ss_pred chHHHHHHHH
Confidence 6543333333
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=20 Score=33.71 Aligned_cols=122 Identities=9% Similarity=0.007 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.=.|.+.+|=..|+.+.+++..+-+.+| . +++..+. +...++.+|++.+..- ...... ..+++. |..+.++.
T Consensus 44 ~g~p~~~~lE~~la~leg~~~~v~~ssG--~--~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~-G~~v~~v~ 117 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGGVGTVCFATG--M--AAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGL-GVEVTMVD 117 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeCCH--H--HHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhc-CCEEEEEC
Confidence 4568889999999999999988777664 4 3333322 3345677888866532 222222 346677 88866654
Q ss_pred cchHHHhcC-C-CCccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.|.. + +.-.+|++..-- .....-++.+ ... +.|.+||+||.+..+
T Consensus 118 ~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~ 173 (397)
T PRK05939 118 ATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP 173 (397)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence 332343443 4 367899997532 2223233333 333 678999999987543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=8.3 Score=33.29 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=53.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcC--------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGE-------- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~-------- 110 (223)
+-++||=.|.+.| +++.++...+ ..+.+|+.++++++..+...+.+... |..+.++.+|..+ .+.+
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGA--ALGMKLVLADVQQDALDRAVAELRAQ-GAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHH--HCCCEEEEEeCChHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3478998888766 4566554433 34678999999988777776666665 6667778888642 2222
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
.+++|.||.=|.-
T Consensus 81 ~g~id~vi~~Ag~ 93 (287)
T PRK06194 81 FGAVHLLFNNAGV 93 (287)
T ss_pred cCCCCEEEECCCC
Confidence 2368999887754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=9.3 Score=31.94 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
+.+.+|=.|.+.| .+..+ +......+.+|+.+.++++..+.....++.. +..+.++.+|..+ .+. +
T Consensus 6 ~~~~vlVtG~sg~-iG~~l--~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 6 QGKNALITGAGRG-IGRAV--AIALAKEGVNVGLLARTEENLKAVAEEVEAY-GVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCEEEEEcCCch-HHHHH--HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4478899997644 34544 4333345779999999988777666666666 6557777777521 122 2
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.+.|.||.-+.
T Consensus 82 ~~~id~vi~~ag 93 (239)
T PRK07666 82 LGSIDILINNAG 93 (239)
T ss_pred cCCccEEEEcCc
Confidence 346898887653
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=6 Score=33.53 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=52.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~~ 110 (223)
.-|+||=.|.+.| .++.++... ...+.+|+.++++++..+...+.++.. |.++.++..|..+ .+ ..
T Consensus 9 ~~k~vlItGa~g~-iG~~ia~~l--~~~G~~V~~~~r~~~~~~~~~~~i~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGSSQG-IGYALAEGL--AQAGAEVILNGRDPAKLAAAAESLKGQ-GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECCcch-HHHHHHHHH--HHcCCEEEEEeCCHHHHHHHHHHHHhc-CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3478999997655 455554443 344778999999998887777778776 7666677776642 11 12
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+.+.|.++.-+.
T Consensus 85 ~~~~d~li~~ag 96 (255)
T PRK07523 85 IGPIDILVNNAG 96 (255)
T ss_pred cCCCCEEEECCC
Confidence 346898887765
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=8.5 Score=34.90 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=54.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------H----hc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------V----MG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------v----L~ 109 (223)
..-+.||=.|.+.|. +.+++...+ ..+.+|+-+.++++..+...+.++.. |..+.++.+|..+ . ..
T Consensus 6 l~~k~vlITGas~gI-G~~la~~la--~~G~~Vvl~~R~~~~l~~~~~~l~~~-g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAGV-GRATARAFA--RRGAKVVLLARGEEGLEALAAEIRAA-GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 345789999988774 455544433 34678999999999888888888877 7666777777421 1 12
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
+++++|.++..|.
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 2357999887765
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.43 E-value=6.7 Score=32.86 Aligned_cols=76 Identities=24% Similarity=0.184 Sum_probs=49.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L~ 112 (223)
++||=.|.+ |+.++.++... ...+.+|+.+.++++..+.....+... +..+.++.+|..+ +.+.+.
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l--~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALAL--AAAGANVVVNDLGEAGAEAAAKVATDA-GGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 467778865 44456554433 334678999999988777777767665 5557777776642 222345
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.|+.-+.
T Consensus 78 ~~d~vi~~a~ 87 (255)
T TIGR01963 78 GLDILVNNAG 87 (255)
T ss_pred CCCEEEECCC
Confidence 7899887663
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.35 E-value=2.7 Score=39.58 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=71.2
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK 112 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~ 112 (223)
.......+..++.+||++|- ++..++. - ....++-++.++..+.++......+ +++ -.+..+|..+...+=.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~--~~~~i~~--f-~~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGG--PSRYIAV--F-KKAGVVGLDNNAYEAFRANELAKKA-YLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred HhhcCcccccccccCcCcCc--hhHHHHH--h-ccCCccCCCcCHHHHHHHHHHHHHH-HhhhhcceehhhhhcCCCCcc
Confidence 33344455578899999886 4444432 2 2467888999998888888887777 777 4447777776433334
Q ss_pred CccEE-EEeCC--CcccHHHH-HHhccCCCceEEEEeCC
Q 027409 113 GVDFL-VVDCT--SKDFARVL-RFARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfV-FIDa~--K~~Y~~~f-~~~~~l~~GgvIV~DNv 147 (223)
.||++ |+|+- ..+-...+ |..+.++|||+.++-..
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 78987 67764 22223344 45577899999998764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=7.9 Score=32.84 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~ 110 (223)
+-|.+|=.|.+.|. +.+++...+ ..+.+|+.+.++++..+...+.++.. |-.+.++..|..+ .+ ..
T Consensus 8 ~~k~vlVtGas~gI-G~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTGI-GKRVALAYV--EAGAQVAIAARHLDALEKLADEIGTS-GGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHH--HCCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45889999988663 555554443 34678999999998888777777766 6446666666431 11 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 84 ~g~id~lv~~ag 95 (253)
T PRK05867 84 LGGIDIAVCNAG 95 (253)
T ss_pred hCCCCEEEECCC
Confidence 347898887654
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=8.8 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=50.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH------HHhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE------EVMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~------evL~~---- 110 (223)
.-+++|=+|.+.|. +..++...+ ..+.+|+.++++++..+.+.+.+... |..+.++..|.. +.+..
T Consensus 4 ~~~~~lItG~~g~i-G~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQGL-GRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGAL-GTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789989987553 455544433 34678999999998877777777776 655666667632 12222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.||.=+.
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 246898886543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=83.21 E-value=23 Score=32.85 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch---------HHHHHHHHHHhhcCce--
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER---------SRLAYVKAMYDVVGWV-- 96 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e---------~~~~Ar~~~~~a~G~~-- 96 (223)
+....+...+....+++|+=||. |+ +++-+|......+.+|+-++..+. ..+..++.+++. |+.
T Consensus 123 ~~~~~~~~~l~~~~~~~vvViGg--G~--~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~v~ 197 (427)
T TIGR03385 123 EDTDAIKQYIDKNKVENVVIIGG--GY--IGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKH-EINLR 197 (427)
T ss_pred HHHHHHHHHHhhcCCCeEEEECC--CH--HHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHc-CCEEE
Confidence 33444444444567899999986 46 455555444444556777776543 233445556666 765
Q ss_pred ----EEEEecchHH-HhcCCC--CccEEEEeCCCcccHHHHHHhcc-C-CCceEEEEeC
Q 027409 97 ----SEVIVRQAEE-VMGELK--GVDFLVVDCTSKDFARVLRFARF-S-NKGAVLAFKN 146 (223)
Q Consensus 97 ----I~li~GdA~e-vL~~L~--~fDfVFIDa~K~~Y~~~f~~~~~-l-~~GgvIV~DN 146 (223)
|.=+.++... ++.+=+ ++|++++=..-..-..+++.+.+ + +.|++ .+|.
T Consensus 198 ~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i-~vd~ 255 (427)
T TIGR03385 198 LNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAI-WVNE 255 (427)
T ss_pred eCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCE-EECC
Confidence 2223333211 111111 69999986554433456665432 3 44555 4554
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=11 Score=33.25 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=57.1
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC-CC
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL-KG 113 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L-~~ 113 (223)
......+||=.| +.+.+..++.+|.+. .+.+|+.+..++++.+.+++ . |.. +.... .+..+.+.++ +.
T Consensus 159 ~~~~g~~vlV~g-~g~vG~~~~~la~~~--~g~~v~~~~~~~~~~~~~~~----~-g~~~v~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 159 GIKPGQWIAIYG-AGGLGNLALQYAKNV--FNAKVIAVDINDDKLALAKE----V-GADLTINSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHh--CCCeEEEEeCChHHHHHHHH----c-CCcEEecccccccHHHHHHHhcCC
Confidence 334556888888 445544555555432 26789999999988777743 4 654 22211 2223344433 46
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+|++|+|+.. ...++ .++.++++|-++.
T Consensus 231 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 8999999753 34454 4566667776663
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=82.76 E-value=18 Score=31.27 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=56.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--- 111 (223)
++.....+||=.|.+.+.+..++.+|.+ .+.+++.+..++++.+.+++ . |.. +.....+..+.+.++
T Consensus 138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~ 209 (324)
T cd08244 138 ATLTPGDVVLVTAAAGGLGSLLVQLAKA---AGATVVGAAGGPAKTALVRA----L-GADVAVDYTRPDWPDQVREALGG 209 (324)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH----c-CCCEEEecCCccHHHHHHHHcCC
Confidence 3445667888888655554455666654 36789999988887666543 4 554 333333444444433
Q ss_pred CCccEEEEeCCCcccHHHHHHhccCCCceEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLRFARFSNKGAVLA 143 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV 143 (223)
..+|+|+ |+-.... .-..++.++++|.++
T Consensus 210 ~~~d~vl-~~~g~~~--~~~~~~~l~~~g~~v 238 (324)
T cd08244 210 GGVTVVL-DGVGGAI--GRAALALLAPGGRFL 238 (324)
T ss_pred CCceEEE-ECCChHh--HHHHHHHhccCcEEE
Confidence 2699987 7754332 223445566666655
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.74 E-value=5.5 Score=29.62 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=43.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec--chHHHhcCCCCccEEEEeCCCc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR--QAEEVMGELKGVDFLVVDCTSK 124 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G--dA~evL~~L~~fDfVFIDa~K~ 124 (223)
.-+|..+|-++......+..+... |+. ...-.| +|++.+.+...||+|++|..-.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~-g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp 62 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDL-GYEVVEAADGEEEALELLRELPQPDLILLDINMP 62 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHc-CCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 458999999999999999999999 987 455566 5666666543599999999755
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=82.74 E-value=18 Score=33.62 Aligned_cols=123 Identities=13% Similarity=0.001 Sum_probs=69.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-+|.+.+|-..|++..++..++ ++++ |- .+|.++. +...++.+|++.+..-. .+.......... |..+.+..
T Consensus 48 ~~~p~~~~le~~lA~l~g~~~v~-~~~g-g~--~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~-~~~v~~~d 122 (382)
T TIGR02080 48 SGNPTRDLLQQALAELEGGAGAV-VTNT-GM--SAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKG-CFRVLFVD 122 (382)
T ss_pred CCCchHHHHHHHHHHHhCCCcEE-EEcC-HH--HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhc-CeEEEEEC
Confidence 45788888999999999988886 4333 33 4443332 23445667776554432 344444444444 55556554
Q ss_pred cchHHHhc-CC-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.+. .+ ..-++||+..- .....-=++.+ +.. +.|.+||+||.+..+
T Consensus 123 ~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 123 QGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 43233343 34 35789998742 21221112333 333 568999999997544
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=82.57 E-value=6.9 Score=34.75 Aligned_cols=84 Identities=12% Similarity=0.002 Sum_probs=50.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
+.+++|=+|+| |.+..++.+|++. +++ |+.++.++++.+.|+.+ +. ++ ..+. .-..+|.||
T Consensus 144 ~~~~vlV~G~G-~vG~~a~q~ak~~---G~~~v~~~~~~~~rl~~a~~~-----~~-i~-----~~~~--~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHG-TLGRLLARLTKAA---GGSPPAVWETNPRRRDGATGY-----EV-LD-----PEKD--PRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCC-HHHHHHHHHHHHc---CCceEEEeCCCHHHHHhhhhc-----cc-cC-----hhhc--cCCCCCEEE-
Confidence 45689999975 5544566666542 454 77889998887766542 11 11 1111 113689765
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEE
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+.-. ...++ .+..+++||.|+.
T Consensus 206 d~~G~--~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 206 DASGD--PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred ECCCC--HHHHHHHHHhhhcCcEEEE
Confidence 77543 23444 4567788898884
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=6.4 Score=33.86 Aligned_cols=79 Identities=24% Similarity=0.092 Sum_probs=51.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchH-HHHHHHHHHhhcCce-EEEEecchHH------Hhc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERS-RLAYVKAMYDVVGWV-SEVIVRQAEE------VMG 109 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~-~~~Ar~~~~~a~G~~-I~li~GdA~e------vL~ 109 (223)
.-++++||=.|.+.|. +.+++...+ ..+ .+|+-+.++++. .+.+.+.++.. |.. ++++..|..+ .+.
T Consensus 5 ~~~~~~vlItGas~gi-G~~la~~l~--~~gg~~V~~~~r~~~~~~~~~~~~l~~~-~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 5 VGNPQTILLLGGTSEI-GLAICERYL--KNAPARVVLAALPDDPRRDAAVAQMKAA-GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred cCCCcEEEEEcCCcHH-HHHHHHHHH--hcCCCeEEEEeCCcchhHHHHHHHHHhc-CCCceEEEEecCCChHHHHHHHH
Confidence 4578999999998773 455444333 333 588888999885 66666667766 543 7777777531 122
Q ss_pred C---CCCccEEEEeC
Q 027409 110 E---LKGVDFLVVDC 121 (223)
Q Consensus 110 ~---L~~fDfVFIDa 121 (223)
. .++.|.++.-+
T Consensus 81 ~~~~~g~id~li~~a 95 (253)
T PRK07904 81 AAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHhcCCCCEEEEee
Confidence 2 24799888654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.9 Score=36.93 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=55.5
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCc-e--------EEEE-ecchHH
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGW-V--------SEVI-VRQAEE 106 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~-~--------I~li-~GdA~e 106 (223)
++|-=||+ |+.+++++...+.. +-.|+-+|++++..+.+++.+++. .|. . .++. ..|. +
T Consensus 4 ~kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 78 (282)
T PRK05808 4 QKIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-D 78 (282)
T ss_pred cEEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 46777877 56677776665433 457999999999988776543321 031 0 0111 1221 1
Q ss_pred HhcCCCCccEEEEeCCCccc---HHHHHHhcc-CCCceEEEEe
Q 027409 107 VMGELKGVDFLVVDCTSKDF---ARVLRFARF-SNKGAVLAFK 145 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y---~~~f~~~~~-l~~GgvIV~D 145 (223)
.+...|+||+=. +++. .++|..+.. ++++.+|+++
T Consensus 79 ---~~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 79 ---DLKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred ---HhccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 134689988854 5544 377776644 5888877443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.35 E-value=9.5 Score=32.14 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
..++||=.|.+.| .++.++...+ ..+.+|+.+.++++..+...+.++.. +..+.++.+|..+ .+.+
T Consensus 8 ~~k~ilItGasg~-IG~~~a~~l~--~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGASSG-LGARFAQVLA--QAGAKVVLASRRVERLKELRAEIEAE-GGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4588999997655 4565554433 34678999999999887777777665 5456777777632 1111
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
.+++|.++.-+.
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 236888877664
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=25 Score=33.20 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHH-HHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGL-AIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~l-a~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|..-.|=..++++.+...++=..+ |. .+|.+ ..+...+|.+|++.+.. ......+...+++. |++++++.
T Consensus 58 ~~npt~~~Le~~iA~le~~~~~~~~~s--G~--~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~-Gi~v~~v~ 132 (394)
T PRK09028 58 RGTPTHFAFQAAIVELEGGAGTALYPS--GA--AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGF-GIETTYYD 132 (394)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECC--HH--HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhc-ceEEEEEC
Confidence 345666677777787778777774333 43 33322 22334567788887653 23444455566676 88866664
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+..+.|.+ + ++-.+|++-.- ......-++.+ ... +.|.++|+||++..+
T Consensus 133 ~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 133 PMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 443444444 3 35789999863 22223334433 333 668999999998544
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=12 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=43.4
Q ss_pred cCCCeEEEEc-cCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHH---hcCC-
Q 027409 40 WNAKLIVEAW-THGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEV---MGEL- 111 (223)
Q Consensus 40 ~~ak~ILEIG-T~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~ev---L~~L- 111 (223)
.+.+.|+=+| +|.|=+++...||......+-++--|+.|+.+.. |.+.|+.. .|+.+.. ..++.++ |..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~-~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIV-ATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEe-cCCHHHHHHHHHHHH
Confidence 3466677778 5556532333333322233446666777766542 44444433 2443322 2354443 3333
Q ss_pred --CCccEEEEeCCCc
Q 027409 112 --KGVDFLVVDCTSK 124 (223)
Q Consensus 112 --~~fDfVFIDa~K~ 124 (223)
+.+|+||||..-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 3699999998744
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=82.19 E-value=23 Score=32.82 Aligned_cols=123 Identities=9% Similarity=0.011 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|-..+++..++..++=.+++ . ++|.++.....++.+|++.+..- ......+...++. |..+.++.-
T Consensus 44 ~~~p~~~~le~~la~l~g~~~~l~~~sG--~--~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~-G~~v~~vd~ 118 (378)
T TIGR01329 44 SGNPTRTALESLLAKLDKADRAFAFSSG--M--AALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRS-GVVVVHVDT 118 (378)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCH--H--HHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHc-CcEEEEeCC
Confidence 3467788999999999999888766554 3 33333333345566777765432 2222334445566 888555543
Q ss_pred -chHHHhcCCC-CccEEEEeCCCcc--cHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 -QAEEVMGELK-GVDFLVVDCTSKD--FARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 -dA~evL~~L~-~fDfVFIDa~K~~--Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...++ +-.+|++..--.- ...-++.+ ... +.|.++|+||.+..+
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 3333333343 5789998853221 22123333 333 668999999987544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=82.09 E-value=19 Score=33.56 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
...|.+.+|=..+++..++..++= |+.|. +++.++. +...++.+|++-... +..+......+... |..+.++.
T Consensus 58 ~~~p~~~~le~~la~l~g~~~~v~--~ssG~--~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~vd 132 (390)
T PRK08133 58 FTNPTVTMFQERLAALEGAEACVA--TASGM--AAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFVD 132 (390)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEEEC
Confidence 567888999999999999998764 45565 3433322 233455677665432 33445555667777 98866665
Q ss_pred cchHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
-+-.+.+.+ + ++-.+|++..- ......-++.+ ... +.|..||+||.+..+
T Consensus 133 ~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~ 188 (390)
T PRK08133 133 LTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188 (390)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 443444443 4 35789998743 21221122322 333 678999999987433
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=7.7 Score=34.32 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=52.3
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----CC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----EL 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~L 111 (223)
-++||=.|.+.|. +..++-.. ...+.+|+.+.++++..+...+.+... |..+.++.+|..+ .+. .+
T Consensus 40 ~k~vlItGasggI-G~~la~~L--a~~G~~Vi~~~R~~~~l~~~~~~l~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSGI-GEAAAEQF--ARRGATVVAVARREDLLDAVADRITRA-GGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcHH-HHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3789999987663 45544433 334678999999998888777777766 6556677777542 122 23
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.++.-|.
T Consensus 116 g~id~li~~AG 126 (293)
T PRK05866 116 GGVDILINNAG 126 (293)
T ss_pred CCCCEEEECCC
Confidence 47899988663
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.79 E-value=11 Score=31.67 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
..++||=.|.+.| .++.++...+ ..+.+|+.++++++..+...+.+... +..+.++..|..+ +...
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAA--RAGADVVLAARTAERLDEVAAEIDDL-GRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHHh-CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578998888766 4566555444 34679999999998777776666655 5556666666531 2223
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
+++.|.|+.-|..
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 3578999887754
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=81.74 E-value=1.5 Score=35.52 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
+|-..+++..+..+|+|||-|.= ...+.+++ ..|-.|+++|+++. .|+ . |+ +++..|..+ |+
T Consensus 3 ~~a~~ia~~~~~~kiVEVGiG~~---~~vA~~L~--~~G~dV~~tDi~~~---~a~-----~-g~--~~v~DDif~--P~ 64 (127)
T PF03686_consen 3 DFAEYIARLNNYGKIVEVGIGFN---PEVAKKLK--ERGFDVIATDINPR---KAP-----E-GV--NFVVDDIFN--PN 64 (127)
T ss_dssp HHHHHHHHHS-SSEEEEET-TT-----HHHHHHH--HHS-EEEEE-SS-S-------------ST--TEE---SSS----
T ss_pred hHHHHHHHhCCCCcEEEECcCCC---HHHHHHHH--HcCCcEEEEECccc---ccc-----c-Cc--ceeeecccC--CC
Confidence 46667788889999999998743 34444333 23568999999998 111 2 33 455555544 33
Q ss_pred C---CCccEEE-EeCCCcccHHHHHHhcc
Q 027409 111 L---KGVDFLV-VDCTSKDFARVLRFARF 135 (223)
Q Consensus 111 L---~~fDfVF-IDa~K~~Y~~~f~~~~~ 135 (223)
+ ...|+|. |-.-.+..+..+++.+.
T Consensus 65 l~iY~~a~lIYSiRPP~El~~~il~lA~~ 93 (127)
T PF03686_consen 65 LEIYEGADLIYSIRPPPELQPPILELAKK 93 (127)
T ss_dssp HHHHTTEEEEEEES--TTSHHHHHHHHHH
T ss_pred HHHhcCCcEEEEeCCChHHhHHHHHHHHH
Confidence 3 3566665 34445555555555543
|
; PDB: 2K4M_A. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=81.50 E-value=5.4 Score=37.21 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=50.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcCC--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGEL--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~L--~~fDf 116 (223)
..++|+=+|+ |..+.. ++......+..++-||.|++..+..++.+. .+.++.||+. +.|.+. +.+|.
T Consensus 230 ~~~~iiIiG~--G~~g~~--l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYY--LAKLLEKEGYSVKLIERDPERAEELAEELP-----NTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----CCeEEECCCCCHHHHHhcCCccCCE
Confidence 3578999998 454444 444444446689999999998777665432 2578999994 467654 58999
Q ss_pred EEEeCC
Q 027409 117 LVVDCT 122 (223)
Q Consensus 117 VFIDa~ 122 (223)
|++=..
T Consensus 301 vi~~~~ 306 (453)
T PRK09496 301 FIALTN 306 (453)
T ss_pred EEECCC
Confidence 988543
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=81.50 E-value=2.5 Score=34.16 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++-..+++.+++.+|+|||-|. -+..|......+.-|+.+|+++. .+ +..+++...|-.. |+
T Consensus 3 e~a~~iAre~~~gkVvEVGiG~-----~~~VA~~L~e~g~dv~atDI~~~----------~a-~~g~~~v~DDitn--P~ 64 (129)
T COG1255 3 EVAEYIARENARGKVVEVGIGF-----FLDVAKRLAERGFDVLATDINEK----------TA-PEGLRFVVDDITN--PN 64 (129)
T ss_pred cHHHHHHHHhcCCcEEEEccch-----HHHHHHHHHHcCCcEEEEecccc----------cC-cccceEEEccCCC--cc
Confidence 3556778899999999999863 22344444445677999999987 33 4115676666543 23
Q ss_pred C---CCccEEE-EeCCCcccHHHHHHhccC
Q 027409 111 L---KGVDFLV-VDCTSKDFARVLRFARFS 136 (223)
Q Consensus 111 L---~~fDfVF-IDa~K~~Y~~~f~~~~~l 136 (223)
+ ..-|+|. |-+-.+.....++..+.+
T Consensus 65 ~~iY~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 65 ISIYEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred HHHhhCccceeecCCCHHHHHHHHHHHHhh
Confidence 2 3566665 333344444444444433
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=81.37 E-value=8.9 Score=32.42 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=50.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE----LK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~----L~ 112 (223)
|.+|=+|.+.| .++.++.+.+ ..+.+|+.++++++..+.....+.+. +-.+.++..|..+ .+.+ ++
T Consensus 3 k~~lItGas~g-iG~~la~~l~--~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLV--EDGFKVAIVDYNEETAQAAADKLSKD-GGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57888888766 4565554433 34678999999998888777777776 5556666666532 2222 24
Q ss_pred CccEEEEeC
Q 027409 113 GVDFLVVDC 121 (223)
Q Consensus 113 ~fDfVFIDa 121 (223)
+.|.++.-|
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 689888766
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.34 E-value=8.1 Score=32.73 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=50.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH----------HHhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE----------EVMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~----------evL~~L~ 112 (223)
|++|=.|.+.|. +.+++...+ ..+.+|+.++++++..+...+.++.. +-.+.++..|.. +++..++
T Consensus 2 k~~lItG~s~gi-G~~ia~~l~--~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGM-GKAMAKRFA--EEGANVVITGRTKEKLEEAKLEIEQF-PGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 578888888663 555554433 34678999999988877777777665 544777777642 1222234
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-+.
T Consensus 78 ~id~lI~~ag 87 (252)
T PRK07677 78 RIDALINNAA 87 (252)
T ss_pred CccEEEECCC
Confidence 6898887653
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=81.25 E-value=17 Score=30.75 Aligned_cols=95 Identities=18% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--- 111 (223)
.....-++||=.|...+.+..++.+|.+ .+.+++.+..++++.+.+++ . |.. +.....+..+.+..+
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKA---LGATVIGTVSSEEKAELARA----A-GADHVINYRDEDFVERVREITGG 203 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHH----C-CCCEEEeCCchhHHHHHHHHcCC
Confidence 3344557888888654443355555544 36788888888887666543 4 543 222222333434433
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCceEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLA 143 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV 143 (223)
..+|++| |+.... ..+ .++.++++|.++
T Consensus 204 ~~~d~vl-~~~~~~---~~~~~~~~l~~~g~~v 232 (320)
T cd05286 204 RGVDVVY-DGVGKD---TFEGSLDSLRPRGTLV 232 (320)
T ss_pred CCeeEEE-ECCCcH---hHHHHHHhhccCcEEE
Confidence 2699887 775442 333 345566666655
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.24 E-value=15 Score=32.66 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=55.5
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCcc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fD 115 (223)
....-++||=.|+ .+.+..++.+|.+ -+.+++.++.++++.+.+++ . |.. +.....+..+.+.++..+|
T Consensus 160 ~~~~~~~vlV~g~-g~iG~~~~~~a~~---~G~~vi~~~~~~~~~~~~~~----~-g~~~~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 160 GAKPGDLVAVQGI-GGLGHLAVQYAAK---MGFRTVAISRGSDKADLARK----L-GAHHYIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHH----c-CCcEEecCCCccHHHHHHhcCCCC
Confidence 3344568888884 4544444555544 25679999999887666643 4 543 3333334444455455789
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+++ |+.- ....++ .++.++++|.++.
T Consensus 231 ~vi-~~~g--~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 231 LIL-ATAP--NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred EEE-ECCC--chHHHHHHHHHcccCCEEEE
Confidence 887 6531 233444 4566677777663
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.23 E-value=17 Score=33.06 Aligned_cols=94 Identities=20% Similarity=0.127 Sum_probs=55.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEec--chHHHhcCC--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR--QAEEVMGEL-- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G--dA~evL~~L-- 111 (223)
...-.+||=.|++ +.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. |....- +..+.+.++
T Consensus 184 ~~~g~~VlV~G~G-~vG~~a~~~ak~~---G~~~vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLG-AVGLAVIQGAKAA---GASRIIGIDINPDKFELAKK----F-GATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH----c-CCCEEEcccccchHHHHHHHHHhC
Confidence 3456788888863 5544555565542 55 79999999998777654 4 654 333322 244444443
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCc-eEEEE
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKG-AVLAF 144 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~ 144 (223)
..+|+|| |+--. ...+. .+..+++| |.++.
T Consensus 255 ~g~d~vi-d~~g~--~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 255 GGVDYTF-ECIGN--VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CCCcEEE-ECCCC--hHHHHHHHHhhccCCCeEEE
Confidence 2699876 76432 22343 45666665 65553
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=81.22 E-value=9.5 Score=36.20 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|-..|++..+++..+=. +.|. .+|.++. +...++.+|++.+.. ..........+... |..+.+..
T Consensus 55 ~~~pt~~~Le~~lA~l~g~~~~l~~--ssG~--~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~-gi~v~~~d 129 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGGVGALAV--ASGM--AAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRI-GIETRFAA 129 (425)
T ss_pred CCCchHHHHHHHHHHHhCCCceeEe--hhHH--HHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccc-eeEEEEEC
Confidence 5688899999999999998887744 4454 3333332 233456788876542 11333344444445 76666665
Q ss_pred cchHHHhcC-C-CCccEEEEeC--CCcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGE-L-KGVDFLVVDC--TSKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~-L-~~fDfVFIDa--~K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.|.+ + +.-.+|++.. +.....--++.+ ... +.|.+||+||.+..+
T Consensus 130 ~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 130 HDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred CCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 443444443 3 3578999963 222221112333 333 568899999997644
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.13 E-value=6.7 Score=33.09 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH------------
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE------------ 105 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~------------ 105 (223)
....+.||=.|.+.| .++.++...+ ..+.+|+.++++++..+...+.+++. +-. +.++.+|..
T Consensus 9 ~~~~k~vlItG~~g~-iG~~la~~l~--~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 9 LLKDRIILVTGAGDG-IGREAALTYA--RHGATVILLGRTEEKLEAVYDEIEAA-GGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred ccCCCEEEEeCCCch-HHHHHHHHHH--HCCCcEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEecccCCCHHHHHHHHH
Confidence 346788999997755 4565554433 34679999999988777666667665 543 666666653
Q ss_pred HHhcCCCCccEEEEeCC
Q 027409 106 EVMGELKGVDFLVVDCT 122 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~ 122 (223)
++...+.+.|.|+.=|.
T Consensus 85 ~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 12222347898887553
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.12 E-value=13 Score=33.07 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=56.6
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce--------E-EEEecchHH
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV--------S-EVIVRQAEE 106 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~--------I-~li~GdA~e 106 (223)
-++|-=||+| ..+++|+...+. .+-.|+-.|++++..+.+++.+++. .|.- . .+...+-.+
T Consensus 4 ~~~V~vIG~G--~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T PLN02545 4 IKKVGVVGAG--QMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE 79 (295)
T ss_pred cCEEEEECCC--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH
Confidence 4678788885 556676655443 2458999999999988877765432 0210 0 011112222
Q ss_pred HhcCCCCccEEEEeCC--CcccHHHHHHhc-cCCCceEEEEe
Q 027409 107 VMGELKGVDFLVVDCT--SKDFARVLRFAR-FSNKGAVLAFK 145 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~--K~~Y~~~f~~~~-~l~~GgvIV~D 145 (223)
.+ ..-|+||.=.. .+.-..+|..+. .++++.+|+.+
T Consensus 80 ~~---~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~ 118 (295)
T PLN02545 80 EL---RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASN 118 (295)
T ss_pred Hh---CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 22 45798887554 444456676554 45777766644
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=81.04 E-value=15 Score=34.90 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|-..|+...+++..+=.++| .++..+++. +...++.+|++.+.. +......+..+++. |..+.++..
T Consensus 61 ~~~p~~~~Le~~lA~leg~~~al~~~sG--~~Ai~~al~-~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~-Gv~v~~vd~ 136 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGGIGALAVSSG--QAAITYSIL-NIASAGDEIVSSSSLYGGTYNLFAHTLPKL-GITVKFVDP 136 (431)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCH--HHHHHHHHH-HHhCCCCEEEEccCchhhHHHHHHHHHHhC-CEEEEEECC
Confidence 5688899999999999999888766554 322332222 223456677766532 23334455556677 888666654
Q ss_pred chHHHhcC-C-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+.+ + ++.++|++..- ......-++.+ ... +.|.+||+||++..+
T Consensus 137 ~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 137 SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 43444443 4 36889999732 11111112222 332 558899999997533
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.94 E-value=6.1 Score=36.79 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=52.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC--CCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE--LKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~--L~~fDfVF 118 (223)
+.||=+|.+.|++..++.||.+.. . .+++|+ ...+..+.+|+ . |-. ++....|..|.+.+ ..+||+||
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~-~-~~v~t~-~s~e~~~l~k~----l-GAd~vvdy~~~~~~e~~kk~~~~~~DvVl 230 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGTAAIQLAKHAG-A-IKVVTA-CSKEKLELVKK----L-GADEVVDYKDENVVELIKKYTGKGVDVVL 230 (347)
T ss_pred CeEEEEeCCcHHHHHHHHHHHhcC-C-cEEEEE-cccchHHHHHH----c-CCcEeecCCCHHHHHHHHhhcCCCccEEE
Confidence 499999999999888888886542 1 455554 44555555544 4 655 88888888887776 35899875
Q ss_pred EeCCCcccH
Q 027409 119 VDCTSKDFA 127 (223)
Q Consensus 119 IDa~K~~Y~ 127 (223)
||--..|.
T Consensus 231 -D~vg~~~~ 238 (347)
T KOG1198|consen 231 -DCVGGSTL 238 (347)
T ss_pred -ECCCCCcc
Confidence 88766543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=80.88 E-value=12 Score=31.25 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=52.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc--CCCCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG--ELKGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~--~L~~fD 115 (223)
..-++||-.|++. .+..++.++.+ .+.+++.++.++++.+.+++ . |.. +.....+..+.+. .-.++|
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKA---AGARVIVTDRSDEKLELAKE----L-GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHH----h-CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4567899999874 32244445433 35789999999887666644 3 332 3333333333221 124799
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
++| |+... + ..+. .+..++++|.++.
T Consensus 204 ~vi-~~~~~-~-~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 204 VVI-DAVGG-P-ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEE-ECCCC-H-HHHHHHHHhcccCCEEEE
Confidence 987 54332 1 2333 3455567777664
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.84 E-value=2.5 Score=40.33 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=52.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCC---Ccc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELK---GVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~---~fD 115 (223)
..|++||++|-|-|. ++|-+...-|+=-..+-+|-+|...+.. ..+++-++.+ ..-..+|..+-...|. .|+
T Consensus 112 fapqsiLDvG~GPgt---gl~A~n~i~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGT---GLWALNDIWPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred cCcchhhccCCCCch---hhhhhcccCCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 479999999999874 6564433333323355567666543322 2233221333 4445555544333342 477
Q ss_pred EEEE------eCCCcccHHHHHH-hccCCCceEEEE
Q 027409 116 FLVV------DCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFI------Da~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
++.+ |.....-..+++. ..++.+||.+|.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 7654 3322222225553 356677887764
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.78 E-value=21 Score=32.07 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
.-++||=.|+ .|.+..++.+|.+ .+.+++.++.++++.+.|++ . |.. |... +. .-+.+|.++
T Consensus 165 ~g~~VlV~G~-g~iG~~a~~~a~~---~G~~vi~~~~~~~~~~~a~~----~-Ga~~vi~~~--~~-----~~~~~d~~i 228 (329)
T TIGR02822 165 PGGRLGLYGF-GGSAHLTAQVALA---QGATVHVMTRGAAARRLALA----L-GAASAGGAY--DT-----PPEPLDAAI 228 (329)
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHH----h-CCceecccc--cc-----CcccceEEE
Confidence 4468888886 3443233444443 36789999999998776655 5 665 2211 10 013588765
Q ss_pred E-eCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 119 V-DCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 119 I-Da~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
. |+. ...+. .++.+++||.++.=-
T Consensus 229 ~~~~~----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc----HHHHHHHHHhhCCCcEEEEEe
Confidence 4 332 23454 556778888887533
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=80.44 E-value=13 Score=31.13 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=47.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~L~ 112 (223)
|.+|=.|++.| .+..++.. ....+.+|+.+.++++..+...+.+... |..+.++..|..+ .+ +.+.
T Consensus 1 k~~lItG~sg~-iG~~la~~--l~~~G~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQG-IGKGIAER--LAKDGFAVAVADLNEETAKETAKEINQA-GGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCch-HHHHHHHH--HHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788887644 45554443 3345678999999887776666666666 6667777776421 12 2234
Q ss_pred CccEEEEeC
Q 027409 113 GVDFLVVDC 121 (223)
Q Consensus 113 ~fDfVFIDa 121 (223)
+.|.|+.-+
T Consensus 77 ~id~vi~~a 85 (254)
T TIGR02415 77 GFDVMVNNA 85 (254)
T ss_pred CCCEEEECC
Confidence 678887755
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.43 E-value=18 Score=32.06 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
..-.+||=.|+ .+.+..++.+|.+ .+ .+++.++.++++...+++ . |.. +.....+..+.+.++ .+
T Consensus 165 ~~g~~vlI~g~-g~~g~~~~~~a~~---~G~~~v~~~~~~~~~~~~~~~----~-g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 165 KPGDTVAIVGA-GPVGLAALLTAQL---YSPSKIIMVDLDDNRLEVAKK----L-GATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHH----h-CCCceeccccccHHHHHHHHhCCCC
Confidence 34556666664 3443344455543 24 578889998887666664 3 543 444444544444433 36
Q ss_pred ccEEEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+|.|| |+-- -...++.+ +.++++|.+|.
T Consensus 236 ~d~vl-d~~g--~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 236 VDVVI-EAVG--IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCEEE-ECCC--CHHHHHHHHHhccCCcEEEE
Confidence 99776 8752 23345533 66777777763
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=80.41 E-value=24 Score=32.01 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=44.4
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HHhhcCce----EEEE-ecchHHHhcCCCCccEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MYDVVGWV----SEVI-VRQAEEVMGELKGVDFL 117 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~~a~G~~----I~li-~GdA~evL~~L~~fDfV 117 (223)
+|--||+ |+.+++++.+.|.... +.|+.+|++++. ..++.. +.+. +.. .++. .+|..+ + ..-|+|
T Consensus 3 KV~VIGa--G~vG~~iA~~la~~g~-~~VvlvDi~~~l-~~g~a~d~~~~-~~~~~~~~~i~~t~d~~~-~---~~aDiV 73 (305)
T TIGR01763 3 KISVIGA--GFVGATTAFRLAEKEL-ADLVLLDVVEGI-PQGKALDMYEA-SPVGGFDTKVTGTNNYAD-T---ANSDIV 73 (305)
T ss_pred EEEEECc--CHHHHHHHHHHHHcCC-CeEEEEeCCCCh-hHHHHHhhhhh-hhccCCCcEEEecCCHHH-h---CCCCEE
Confidence 6778897 6777888877665432 379999998774 333322 3233 221 3444 355433 3 468999
Q ss_pred EEeCCC
Q 027409 118 VVDCTS 123 (223)
Q Consensus 118 FIDa~K 123 (223)
||=+..
T Consensus 74 Iitag~ 79 (305)
T TIGR01763 74 VITAGL 79 (305)
T ss_pred EEcCCC
Confidence 998874
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=19 Score=33.82 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=70.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
.-.|.+.+|=..|++..++...+= ++.|- ++|.++. +...++.+|++....- ......+..+... |..+.++.
T Consensus 62 ~~~p~~~~le~~lA~l~g~~~~i~--~~sG~--~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~-G~~v~~vd 136 (403)
T PRK07503 62 ISNPTLALLEQRMASLEGGEAAVA--LASGM--GAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF-GVTVRHVD 136 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhC-CEEEEEeC
Confidence 568889999999999999887644 44554 3443332 2345566777754321 1223344445566 88766654
Q ss_pred cchHHHhc-CC-CCccEEEEeCC--CcccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCT--SKDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~--K~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
.+-.+.|. .+ ++-.+|++..- ......-++.+ ... +.|.+||.||.+..+
T Consensus 137 ~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 137 LTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 43333343 34 36789998632 22222112323 232 568899999987543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=28 Score=32.49 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHH-hcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAI-AARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~-A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+.+|=..+++..++..+|=.++ |. +++.++. +...++.+|++.+..-......-+.+... |..+.+..-
T Consensus 50 ~~np~~~~lE~~lA~l~g~~~~l~~~s--G~--~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~-g~~v~~~~~ 124 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGGVDALAFNS--GM--AAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKF-GVKVVLAYP 124 (385)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEeCC--HH--HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhcc-CcEEEEECC
Confidence 446778888888999999988876544 54 3443332 23445667766554332222222224555 777555544
Q ss_pred chHHHhcCC-C-CccEEEEeCCC--cccHHHHHHh-ccC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMGEL-K-GVDFLVVDCTS--KDFARVLRFA-RFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~~L-~-~fDfVFIDa~K--~~Y~~~f~~~-~~l-~~GgvIV~DNvl~~g 151 (223)
|..++...+ + +-++||+..-- ....-=++.+ ... +.|..||+||.+..+
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 533333334 3 57899997532 1111113333 333 678999999997544
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.26 E-value=1.9 Score=42.29 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
-...+.+..++-+|||.=+++|. -+|-.|.-. +.-+.|+.-|.|+...+.-++|.+.- +++ ++...+||.-.+-
T Consensus 100 t~~~~~~~~~~l~vLealsAtGl--rslRya~El-~~v~~v~AnD~~~~aV~~i~~Nv~~N-~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 100 TAALLKREEKSLRVLEALSATGL--RSLRYAKEL-PGVRQVVANDLNENAVTSIQRNVELN-GVEDIVEPHHSDANVLMY 175 (525)
T ss_pred ccchhhhccCcchHHHHhhhhhH--HHHHHHHHh-cchhhhcccCCCHHHHHHHHhhhhhc-CchhhcccccchHHHHHH
Confidence 46677888899999999999988 888777543 33468999999999999999999887 777 9999999988665
Q ss_pred CC----CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 110 EL----KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L----~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
.. ..||+|=+|-- +--..|++ +++-++.||++.+-
T Consensus 176 ~~~~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 176 EHPMVAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred hccccccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEE
Confidence 43 36888766652 23356787 56778999998753
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=30 Score=29.68 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=46.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH----------HHhcCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE----------EVMGEL 111 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~----------evL~~L 111 (223)
+++|=+|.+.|. +..++...+ ..+.+|+.+.++++..+...+.+... +-. +.++.+|.. ++....
T Consensus 1 k~vlItGas~gi-G~~la~~la--~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (272)
T PRK07832 1 KRCFVTGAASGI-GRATALRLA--AQGAELFLTDRDADGLAQTVADARAL-GGTVPEHRALDISDYDAVAAFAADIHAAH 76 (272)
T ss_pred CEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEeeCCCHHHHHHHHHHHHHhc
Confidence 357778887663 444444333 34678888999988777666666654 433 444555542 122233
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.++.=+.
T Consensus 77 ~~id~lv~~ag 87 (272)
T PRK07832 77 GSMDVVMNIAG 87 (272)
T ss_pred CCCCEEEECCC
Confidence 46898887653
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.20 E-value=4.8 Score=35.19 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=34.6
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCC------CcEEEEEeCCchHHHHHHHHHHhh
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHT------CARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~------~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
+-+|+|+|.|.|.-+.- ++.+.... ..+++-||.+|...+..++.++..
T Consensus 19 ~~~ivE~GaG~G~La~d--iL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARD--ILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp -EEEEEES-TTSHHHHH--HHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred CcEEEEECCCchHHHHH--HHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 45899999999984443 33333322 258999999999999999998874
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=9.6 Score=34.71 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=53.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH-----H-Hhc----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE-----E-VMG---- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~-----e-vL~---- 109 (223)
..-+.||=.|.+.|. +.+++...+ ..+.+|+-+.++++..+...+.++.. |.++.++..|.. + .+.
T Consensus 5 l~~k~vlITGAs~GI-G~aia~~la--~~G~~Vvl~~R~~~~l~~~~~~~~~~-g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHGAVVVITGASSGI-GQATAEAFA--RRGARLVLAARDEEALQAVAEECRAL-GAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCCEEEEcCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 345789999988774 455444433 34789999999999988888888877 766555555542 1 111
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.+.++|.++.-|.
T Consensus 81 ~~g~iD~lVnnAG 93 (330)
T PRK06139 81 FGGRIDVWVNNVG 93 (330)
T ss_pred hcCCCCEEEECCC
Confidence 1247899988765
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=8.9 Score=32.96 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH---------HhcCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE---------VMGEL 111 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e---------vL~~L 111 (223)
|.+|=.|.+.| .+++++...+ ..+.+|+.+.++++..+...+..+.. +.. ++++.+|..+ +...+
T Consensus 4 k~~lItGasg~-iG~~la~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 4 KIAIVTGASSG-FGLLTTLELA--KKGYLVIATMRNPEKQENLLSQATQL-NLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CEEEEECCCch-HHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 57888887755 4566554433 34678999999988777666666655 543 7788777633 22233
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
++.|.|+.-|.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 56898888764
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.03 E-value=35 Score=31.89 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=53.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L~~fDfV 117 (223)
++++|.=||+ |..+++++++.+..+-...|+=+|++++.++...--+..+..+. +++.. +| .+. +..-|+|
T Consensus 36 ~~~KI~IIGa--G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~---~~daDiV 109 (350)
T PLN02602 36 RHTKVSVVGV--GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAV---TAGSDLC 109 (350)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHH---hCCCCEE
Confidence 3479999996 55678888877666555789999999987665555566651221 55554 34 232 4579999
Q ss_pred EEeCCCc
Q 027409 118 VVDCTSK 124 (223)
Q Consensus 118 FIDa~K~ 124 (223)
+|-|...
T Consensus 110 VitAG~~ 116 (350)
T PLN02602 110 IVTAGAR 116 (350)
T ss_pred EECCCCC
Confidence 9998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 100.0 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 100.0 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.97 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.97 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.97 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.96 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.96 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.96 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.96 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.95 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.95 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.95 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.94 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.94 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.92 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 99.88 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.68 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.61 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.6 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.56 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.54 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.54 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.52 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.51 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.46 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.46 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.45 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.45 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.44 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.42 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.42 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.41 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.41 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.4 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.39 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.38 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.38 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.37 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.35 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.35 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.34 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.34 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.34 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.34 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.33 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.33 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.33 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.33 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.33 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.32 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.32 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.32 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.32 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.32 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.32 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.31 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.31 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.3 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.3 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.29 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.29 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.28 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.28 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.28 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.28 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.27 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.27 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.27 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.26 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.26 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.26 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.26 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.25 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.24 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.24 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.24 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.24 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.23 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.22 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.22 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.22 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.22 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.22 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.21 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.21 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.21 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.2 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.2 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.2 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.19 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.19 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.19 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.18 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.18 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.17 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.17 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.17 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.16 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.16 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.16 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.16 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.15 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.15 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.15 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.15 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.14 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.14 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.13 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.12 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.12 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.12 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.12 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.11 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.11 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.11 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.1 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.1 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.1 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.09 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.09 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.09 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.08 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.08 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.07 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.07 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.07 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.07 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.06 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.06 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.05 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.05 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.05 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.05 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.05 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.04 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.04 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.04 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.03 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.03 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.03 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.02 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.01 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.01 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.01 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.0 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.0 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.0 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.99 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.99 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.99 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.99 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.99 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.99 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.98 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.98 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.97 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.97 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.97 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.96 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.96 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.94 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.94 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.93 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.92 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.91 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.91 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.91 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.91 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.91 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.9 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.9 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.9 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.89 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.89 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.89 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.88 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.87 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.86 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.86 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.86 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.86 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.86 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.85 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.84 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.84 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.84 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.84 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.84 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.83 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.83 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.82 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.82 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.82 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.81 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.81 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.79 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.79 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.77 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.74 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.74 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.74 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.73 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.71 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.7 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.69 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.69 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.68 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.66 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.64 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.64 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.62 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.59 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.58 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.57 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.49 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.46 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.45 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.42 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.4 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.39 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.39 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.35 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.35 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.33 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.32 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.32 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.32 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.31 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.27 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.27 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.25 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.22 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.21 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.2 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.16 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.12 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.1 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.09 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.08 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.06 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.04 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.04 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.02 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.01 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.97 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.96 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.9 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.84 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.65 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.59 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.57 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.54 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.44 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.36 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.36 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.31 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.09 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.77 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.71 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.62 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.61 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.09 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.84 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.53 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.14 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.67 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.65 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 94.36 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.31 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.3 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.2 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 94.15 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.03 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.01 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.97 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.94 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.9 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.82 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.79 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 93.56 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.55 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.54 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.53 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.5 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.37 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.36 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.31 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 93.29 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.28 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.25 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.19 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.14 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.11 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.09 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.05 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.04 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.97 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.87 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.81 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.76 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 92.74 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.63 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 92.61 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.53 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 92.45 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.4 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.37 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.26 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.17 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.05 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.98 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 91.89 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.85 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 91.85 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.83 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 91.67 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 91.65 | |
| 3lte_A | 132 | Response regulator; structural genomics, PSI, prot | 91.59 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 91.54 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 91.41 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.4 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 91.32 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.22 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 91.18 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 91.18 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 91.18 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 91.07 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.02 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.98 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.94 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.92 | |
| 3snk_A | 135 | Response regulator CHEY-like protein; P-loop conta | 90.88 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.88 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 90.8 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.78 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 90.74 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.73 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.71 | |
| 2b4a_A | 138 | BH3024; flavodoxin-like fold, structural genomics, | 90.68 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 90.67 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 90.58 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 90.58 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.47 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.47 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 90.45 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.43 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 90.39 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 90.37 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 90.35 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 90.29 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.22 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 90.17 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.16 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 90.08 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 90.04 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.97 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 89.96 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.96 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 89.89 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 89.78 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 89.75 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.67 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.62 | |
| 3a10_A | 116 | Response regulator; phosphoacceptor, signaling pro | 89.48 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 89.39 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.37 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.32 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.25 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 89.24 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 89.18 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 89.18 | |
| 3crn_A | 132 | Response regulator receiver domain protein, CHEY-; | 89.14 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.12 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.07 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 89.06 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.94 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 88.92 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.8 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.78 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.68 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.68 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 88.62 | |
| 2gkg_A | 127 | Response regulator homolog; social motility, recei | 88.58 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 88.5 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 88.25 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 88.19 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 88.19 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 88.12 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 87.99 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 87.93 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 87.92 | |
| 2qzj_A | 136 | Two-component response regulator; 11017X, PSI-II, | 87.9 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.84 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 87.77 | |
| 1srr_A | 124 | SPO0F, sporulation response regulatory protein; as | 87.72 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 87.64 | |
| 2jba_A | 127 | Phosphate regulon transcriptional regulatory PROT; | 87.58 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 87.54 | |
| 2qv0_A | 143 | Protein MRKE; structural genomics, transcription, | 87.49 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.46 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 87.15 | |
| 2rdm_A | 132 | Response regulator receiver protein; structural ge | 87.12 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 87.11 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 86.96 | |
| 3n0r_A | 286 | Response regulator; sigma factor, receiver, two-co | 86.95 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 86.9 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 86.9 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 86.83 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 86.82 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.76 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 86.72 | |
| 1yio_A | 208 | Response regulatory protein; transcription regulat | 86.7 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 86.66 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 86.65 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 86.6 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 86.51 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 86.45 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.39 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.36 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.29 | |
| 3c3m_A | 138 | Response regulator receiver protein; structural ge | 86.22 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 86.2 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 86.15 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 85.9 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 85.9 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.89 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 85.84 | |
| 3t6k_A | 136 | Response regulator receiver; flavodoxin-like, stru | 85.81 | |
| 3cfy_A | 137 | Putative LUXO repressor protein; structural genomi | 85.8 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 85.75 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 85.53 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 85.51 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.49 | |
| 1zgz_A | 122 | Torcad operon transcriptional regulatory protein; | 85.45 | |
| 2a9o_A | 120 | Response regulator; essential protein, YYCF/YYCG h | 85.44 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 85.43 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 85.42 | |
| 3kcn_A | 151 | Adenylate cyclase homolog; SGX, PSI 2, structural | 85.24 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 85.24 | |
| 1mvo_A | 136 | PHOP response regulator; phosphate regulon, transc | 85.23 | |
| 3rqi_A | 184 | Response regulator protein; structural genomics, s | 85.2 | |
| 2lpm_A | 123 | Two-component response regulator; transcription re | 85.2 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 85.2 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 85.18 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.17 | |
| 3m6m_D | 143 | Sensory/regulatory protein RPFC; RPFF, REC, enoyl- | 85.12 | |
| 1s8n_A | 205 | Putative antiterminator; RV1626, structural genomi | 85.01 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 84.98 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 84.94 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 84.77 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 84.57 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 84.48 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 84.45 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 84.42 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 84.39 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 84.38 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 84.28 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.18 | |
| 2pl1_A | 121 | Transcriptional regulatory protein PHOP; CHEY-like | 84.15 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 84.14 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.13 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 84.06 | |
| 1mb3_A | 124 | Cell division response regulator DIVK; signal tran | 84.05 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.95 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 83.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 83.9 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.9 |
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=241.87 Aligned_cols=176 Identities=15% Similarity=0.249 Sum_probs=146.4
Q ss_pred hHHHHHHHHhhcccC---------------CCCcHHHHHHHHHHHHhcCCC---eEEEEccCcchHHHHHHHHHhcCCCC
Q 027409 8 DAASKAYIDTVKSCE---------------NIKESGVAELLSAMAAGWNAK---LIVEAWTHGGPITTSIGLAIAARHTC 69 (223)
Q Consensus 8 ~~a~~ayl~~l~~~~---------------~ii~p~~g~fL~~L~~~~~ak---~ILEIGT~~Gys~Stl~la~A~~~~~ 69 (223)
..+..+|+.++.+.. .+++|++++||..|++..+++ +|||||||+|| ++++||.+. +++
T Consensus 5 ~~~~~~y~~~~~~~~~~l~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~ 81 (221)
T 3dr5_A 5 FEYLRTYVESTTETDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGL--VGLYILNGL-ADN 81 (221)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHH--HHHHHHHHS-CTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchH--HHHHHHHhC-CCC
Confidence 344567777765432 278999999999999999999 99999999999 899998764 457
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHHh-ccCCCceEEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+|++||+++++++.|+++++++ |+. |+++.|||.+.++.+ ++||+||+|+++.+|.++|+.+ +.|+|||+|+
T Consensus 82 ~~v~~vD~~~~~~~~a~~~~~~~-g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREA-GYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALV 160 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-TCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHc-CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEE
Confidence 99999999999999999999999 875 999999999999887 4899999999999999999866 6779999999
Q ss_pred EeCCCCCCc-cccccccc---------cccccCCCceEEEEeecCCceEEEEEcc
Q 027409 144 FKNAFQRST-SGLRWQGQ---------GVLDRGTRVVRSVFLPVGQGLDIVHVGS 188 (223)
Q Consensus 144 ~DNvl~~g~-~~~~~~~r---------~~v~~~~~~~~t~lLPiGDGl~vs~k~~ 188 (223)
+||++++|. .+...+.+ ..++ .++++++++||+|||++++++-+
T Consensus 161 ~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~lp~gdGl~~~~~~~ 214 (221)
T 3dr5_A 161 LADALLDGTIADQTRKDRDTQAARDADEYIR-SIEGAHVARLPLGAGLTVVTKAL 214 (221)
T ss_dssp ETTTTGGGTCSCSSCCCHHHHHHHHHHHHHT-TCTTEEEEEESSTTCEEEEEECC
T ss_pred EeCCCCCCcCCCCCCCChHHHHHHHHHHHHh-hCCCeeEEEeeccchHHHHHHHH
Confidence 999998764 11111110 1233 44779999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=236.21 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=136.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|++++||..|+...++++|||||||+|| ++++||.+. +++|+|++||+++++++.|+++++++ |+. |+++.
T Consensus 43 ~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~--~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~ 118 (242)
T 3r3h_A 43 QVAPEQAQFMQMLIRLTRAKKVLELGTFTGY--SALAMSLAL-PDDGQVITCDINEGWTKHAHPYWREA-KQEHKIKLRL 118 (242)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEEESCCSH--HHHHHHHTS-CTTCEEEEEECCCSSCCCSHHHHHHT-TCTTTEEEEE
T ss_pred ccCHHHHHHHHHHHhhcCcCEEEEeeCCcCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 4899999999999999999999999999999 899998764 44799999999999999999999999 986 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c---------ccccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L---------RWQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~---------~~~~r~~ 162 (223)
|||.+.++.+ +.||+||+|+++.+|..+|+.+ +.|+|||+|++||+++.|. +. . .++. .
T Consensus 119 gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~--~ 196 (242)
T 3r3h_A 119 GPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQ--V 196 (242)
T ss_dssp SCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHH--H
Confidence 9999998875 5899999999999999999865 6779999999999998774 11 0 0111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEcccCCCC
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVGSTSGSG 193 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~~~~~~~ 193 (223)
+. .+++++++++|+|||+++++|+..++-.
T Consensus 197 l~-~~~~~~~~~lp~~dG~~~~~k~~~~~~~ 226 (242)
T 3r3h_A 197 IK-NDSRVFVSLLAIADGMFLVQPIAENLYF 226 (242)
T ss_dssp HH-TCCSEEEEEESSSSCEEEEEEC------
T ss_pred Hh-hCCCEEEEEEEccCceEEEEEcCCCcch
Confidence 33 3477999999999999999998655444
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=227.66 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=135.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|+++++|..|++..++++|||||||+|| +++++|.+. +++++|+++|+++++++.|+++++++ |+. |+++.
T Consensus 53 ~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~ 128 (237)
T 3c3y_A 53 STSPLAGQLMSFVLKLVNAKKTIEVGVFTGY--SLLLTALSI-PDDGKITAIDFDREAYEIGLPFIRKA-GVEHKINFIE 128 (237)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSH--HHHHHHHHS-CTTCEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEE
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEeCCCCCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6799999999999999999999999999999 888998764 45799999999999999999999999 986 99999
Q ss_pred cchHHHhcCC-------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc---cccccc-------c
Q 027409 102 RQAEEVMGEL-------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG---LRWQGQ-------G 161 (223)
Q Consensus 102 GdA~evL~~L-------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~---~~~~~r-------~ 161 (223)
|||.+.++.+ +.||+||+|+++.+|..+|+.+ +.++|||+|++||+++.|. .. ...+.+ .
T Consensus 129 gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~ 208 (237)
T 3c3y_A 129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIE 208 (237)
T ss_dssp SCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHH
T ss_pred cCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHH
Confidence 9999988754 4799999999999999999866 5679999999999998764 11 000000 0
Q ss_pred ---ccccCCCceEEEEeecCCceEEEEEc
Q 027409 162 ---VLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 162 ---~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
.+. .++++.++++|+|||+++++|+
T Consensus 209 ~~~~l~-~~~~~~~~~lp~~dG~~~~~~~ 236 (237)
T 3c3y_A 209 LNKLLA-ADPRIEIVHLPLGDGITFCRRL 236 (237)
T ss_dssp HHHHHH-HCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHh-cCCCeEEEEEEeCCceEEEEEc
Confidence 122 3467999999999999999986
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=225.65 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=135.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|++++||..|++..++++|||||||+|| ++++||.+. +++++|++||+++++++.|+++++++ |+. |+++.
T Consensus 62 ~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~--~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~i~~~~ 137 (247)
T 1sui_A 62 TTSADEGQFLSMLLKLINAKNTMEIGVYTGY--SLLATALAI-PEDGKILAMDINKENYELGLPVIKKA-GVDHKIDFRE 137 (247)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCGGGH--HHHHHHHHS-CTTCEEEEEESCCHHHHHHHHHHHHT-TCGGGEEEEE
T ss_pred CcCHHHHHHHHHHHHhhCcCEEEEeCCCcCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCeEEEE
Confidence 6799999999999999999999999999999 888998764 44799999999999999999999999 985 99999
Q ss_pred cchHHHhcCC-------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc---ccc---c-------
Q 027409 102 RQAEEVMGEL-------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG---LRW---Q------- 158 (223)
Q Consensus 102 GdA~evL~~L-------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~---~~~---~------- 158 (223)
|||.+.++.+ +.||+||+|+++.+|..+|+.+ +.|+|||+|++||+++.|. .. ... +
T Consensus 138 gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~ 217 (247)
T 1sui_A 138 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVL 217 (247)
T ss_dssp SCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHH
Confidence 9999988764 4799999999999999999865 6779999999999998774 11 000 0
Q ss_pred c-ccccccCCCceEEEEeecCCceEEEEEc
Q 027409 159 G-QGVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 159 ~-r~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
. ...+. .++++.++++|+|||+++++|+
T Consensus 218 ~~~~~l~-~~~~~~~~~lp~~dG~~l~~k~ 246 (247)
T 1sui_A 218 ELNKALA-VDPRIEICMLPVGDGITICRRI 246 (247)
T ss_dssp HHHHHHH-TCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHh-hCCCeEEEEEecCCccEEEEEc
Confidence 0 00122 4567999999999999999875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=215.05 Aligned_cols=157 Identities=15% Similarity=0.232 Sum_probs=134.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
++.|++++||..+++..++++|||||||+|| +++++|.+. +++++++++|+++++++.|+++++++ |+. |+++.
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~ 130 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGY--SALAMALQL-PPDGQIIACDQDPNATAIAKKYWQKA-GVAEKISLRL 130 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCTTSH--HHHHHHTTS-CTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEE
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6799999999999999999999999999999 888998653 44789999999999999999999999 986 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc-c---------ccccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG-L---------RWQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~-~---------~~~~r~~ 162 (223)
||+.+.++.+ +.||+||+|+++.+|..+|+.+ +.++|||+|++||+++.|. .. . .++. .
T Consensus 131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 208 (232)
T 3cbg_A 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNR--D 208 (232)
T ss_dssp SCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHH--H
Confidence 9999887765 5799999999999999999866 6779999999999998764 11 0 1111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEc
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
+. .++++.++++|+|||+++++|+
T Consensus 209 l~-~~~~~~~~~lp~~dG~~~~~~~ 232 (232)
T 3cbg_A 209 LA-QDERVRISVIPLGDGMTLALKK 232 (232)
T ss_dssp HT-TCTTEEEEEECSBTCEEEEEEC
T ss_pred Hh-hCCCeEEEEEEcCCeEEEEEeC
Confidence 33 4567999999999999999874
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=209.04 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=134.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
++.|+++++|..++...++++|||||||+|| ++++||.+ .++++|+++|+++++++.|+++++++ |+. |+++.
T Consensus 54 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~--~~~~la~~--~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 128 (232)
T 3ntv_A 54 IVDRLTLDLIKQLIRMNNVKNILEIGTAIGY--SSMQFASI--SDDIHVTTIERNETMIQYAKQNLATY-HFENQVRIIE 128 (232)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEEECCSSSH--HHHHHHTT--CTTCEEEEEECCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred CcCHHHHHHHHHHHhhcCCCEEEEEeCchhH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6899999999999999999999999999999 88888753 24789999999999999999999999 985 99999
Q ss_pred cchHHHhc-CC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc---ccc-c----------ccc-cccc
Q 027409 102 RQAEEVMG-EL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST---SGL-R----------WQG-QGVL 163 (223)
Q Consensus 102 GdA~evL~-~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~---~~~-~----------~~~-r~~v 163 (223)
||+.+.++ .+ ++||+||+|+++.+|..+|+.+ +.|+|||++++||+++.|. +.. . .+. ...+
T Consensus 129 ~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l 208 (232)
T 3ntv_A 129 GNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWL 208 (232)
T ss_dssp SCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHH
Confidence 99999888 66 5899999999999999999866 5679999999999999774 111 0 000 0023
Q ss_pred ccCCCceEEEEeecCCceEEEEEc
Q 027409 164 DRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 164 ~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
. .+++++++++|+|||+++++|+
T Consensus 209 ~-~~~~~~~~~lp~~dG~~i~~k~ 231 (232)
T 3ntv_A 209 I-KQPGYTTNFLNIDDGLAISIKG 231 (232)
T ss_dssp H-TCTTEEEEEECSTTCEEEEEEC
T ss_pred h-cCCCeEEEEEEcCCceEEEEEC
Confidence 3 4567999999999999999985
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=203.40 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=133.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|++++||..+++..++++|||||||+|+ +++++|.+. +++++++++|+++++++.|+++++++ |+. |+++.
T Consensus 52 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~i~~~~ 127 (229)
T 2avd_A 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGY--SALALALAL-PADGRVVTCEVDAQPPELGRPLWRQA-EAEHKIDLRL 127 (229)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSH--HHHHHHTTS-CTTCEEEEEESCSHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEcCCccH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHC-CCCCeEEEEE
Confidence 7899999999999999999999999999999 888888543 34789999999999999999999999 985 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--ccc----------ccccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SGL----------RWQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~~----------~~~~r~~ 162 (223)
||+.+.++.+ +.||+||+|+.+.+|..+++.+ +.++|||+|++||+++.+. ... .++. .
T Consensus 128 ~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 205 (229)
T 2avd_A 128 KPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNE--R 205 (229)
T ss_dssp SCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHH--H
Confidence 9999987765 5799999999999999999866 6679999999999998763 110 1111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEc
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
+. .+++++++++|+|||+++++|.
T Consensus 206 l~-~~~~~~~~~lp~~dGl~~~~k~ 229 (229)
T 2avd_A 206 IR-RDVRVYISLLPLGDGLTLAFKI 229 (229)
T ss_dssp HH-HCTTEEEEEECSTTCEEEEEEC
T ss_pred Hh-hCCCEEEEEEecCCceEEEEEC
Confidence 33 3466999999999999999874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=199.93 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=134.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|+++++|..++...++++|||||||+|+ ++++||.+. +++++|++||+++++++.|+++++++ |+. |+++.
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 116 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGY--SAVRMARLL-QPGARLLTMEINPDCAAITQQMLNFA-GLQDKVTILN 116 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHTTS-CTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEE
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCH--HHHHHHHhC-CCCCEEEEEeCChHHHHHHHHHHHHc-CCCCceEEEE
Confidence 7899999999999999999999999999999 888998653 45789999999999999999999999 987 99999
Q ss_pred cchHHHhcCCC------CccEEEEeCCCcccHHHHHH---hccCCCceEEEEeCCCCCCccccccccccccccCCCceEE
Q 027409 102 RQAEEVMGELK------GVDFLVVDCTSKDFARVLRF---ARFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVRS 172 (223)
Q Consensus 102 GdA~evL~~L~------~fDfVFIDa~K~~Y~~~f~~---~~~l~~GgvIV~DNvl~~g~~~~~~~~r~~v~~~~~~~~t 172 (223)
||+.+.++.+. +||+||+|+.+.+|..+++. ++.|+|||+||+||+.+++... +.. .+++ ++.+.+
T Consensus 117 ~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~--~~~--~l~~-~~~~~~ 191 (221)
T 3u81_A 117 GASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPD--FLA--YVRG-SSSFEC 191 (221)
T ss_dssp SCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEEEESCCCCCCCHH--HHH--HHHH-CTTEEE
T ss_pred CCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEEEEeCCCCcchHH--HHH--HHhh-CCCceE
Confidence 99999988763 79999999999999976554 3677999999999999877522 222 3333 356999
Q ss_pred EEee-------cCCceEEEEEcc
Q 027409 173 VFLP-------VGQGLDIVHVGS 188 (223)
Q Consensus 173 ~lLP-------iGDGl~vs~k~~ 188 (223)
+++| ++||+++++++.
T Consensus 192 ~~~~~~~~~~~~~dG~~~~~~~g 214 (221)
T 3u81_A 192 THYSSYLEYMKVVDGLEKAIYQG 214 (221)
T ss_dssp EEEEEEETTTTEEEEEEEEEECC
T ss_pred EEcccccccCCCCCceEEEEEeC
Confidence 9999 899999999974
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=205.42 Aligned_cols=177 Identities=17% Similarity=0.199 Sum_probs=143.1
Q ss_pred HHHHHHHhhcccCC------------------CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcE
Q 027409 10 ASKAYIDTVKSCEN------------------IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCAR 71 (223)
Q Consensus 10 a~~ayl~~l~~~~~------------------ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~ 71 (223)
...+|+.++..... .++|.++++|..++...++++|||||||+|+ ++++||.+. +++++
T Consensus 14 ~~~~y~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~--~~~~la~~~-~~~~~ 90 (248)
T 3tfw_A 14 AVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGY--STIWMAREL-PADGQ 90 (248)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSH--HHHHHHTTS-CTTCE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchH--HHHHHHHhC-CCCCE
Confidence 35577776655432 3579999999999999999999999999999 888888543 44789
Q ss_pred EEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC---CccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 72 HVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK---GVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 72 i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~---~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|+++|+++++++.|+++++++ |+. |+++.||+.+.++.+. .||+||+|+++.+|+.+|+.+ +.|+|||+||+|
T Consensus 91 v~~vD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 91 LLTLEADAHHAQVARENLQLA-GVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp EEEEECCHHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 999999999999999999999 987 9999999999998762 799999999999999999865 677999999999
Q ss_pred CCCCCCc--c-cc---------ccccccccccCCCceEEEEe-ecC----CceEEEEEcccCCCC
Q 027409 146 NAFQRST--S-GL---------RWQGQGVLDRGTRVVRSVFL-PVG----QGLDIVHVGSTSGSG 193 (223)
Q Consensus 146 Nvl~~g~--~-~~---------~~~~r~~v~~~~~~~~t~lL-PiG----DGl~vs~k~~~~~~~ 193 (223)
|+++.|. . .. .+.. .+. .+++++++++ |+| ||+.+++++...-.+
T Consensus 170 ~~~~~g~v~~~~~~~~~~~~~~~~~~--~l~-~~~~~~~~~l~~~g~~~~DG~~i~~~~~~~~~~ 231 (248)
T 3tfw_A 170 NVVRDGEVVNPQSADERVQGVRQFIE--MMG-AEPRLTATALQTVGTKGWDGFTLAWVNAAENLY 231 (248)
T ss_dssp CCSGGGGGGCTTCCCHHHHHHHHHHH--HHH-HCTTEEEEEEEECSTTCSEEEEEEEECCC----
T ss_pred CCCcCCcccCccccchHHHHHHHHHH--HHh-hCCCEEEEEeecCCCCCCCeeEEEEEeCCcchH
Confidence 9998764 1 10 0111 233 3466999988 777 999999998654444
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=199.64 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=133.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|.++++|..++...++++|||||||+|+ +++++|.+. +++++++++|+++++++.|+++++++ |+. |+++.
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 116 (223)
T 3duw_A 41 DVSPTQGKFLQLLVQIQGARNILEIGTLGGY--STIWLARGL-SSGGRVVTLEASEKHADIARSNIERA-NLNDRVEVRT 116 (223)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSH--HHHHHHTTC-CSSCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEecCCccH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 3579999999999999999999999999999 888888643 44789999999999999999999999 986 99999
Q ss_pred cchHHHhcCC-----CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--c-cc---------cccccccc
Q 027409 102 RQAEEVMGEL-----KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--S-GL---------RWQGQGVL 163 (223)
Q Consensus 102 GdA~evL~~L-----~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~-~~---------~~~~r~~v 163 (223)
||+.+.++.+ ++||+||+|+.+..|..+|+.+ +.|+|||+|++||+++.|. . .. .+.. .+
T Consensus 117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~l 194 (223)
T 3duw_A 117 GLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYE--LI 194 (223)
T ss_dssp SCHHHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHH--HH
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHH--HH
Confidence 9999987764 4699999999999999999865 6779999999999998763 1 10 1111 23
Q ss_pred ccCCCceEEEEeec-----CCceEEEEEc
Q 027409 164 DRGTRVVRSVFLPV-----GQGLDIVHVG 187 (223)
Q Consensus 164 ~~~~~~~~t~lLPi-----GDGl~vs~k~ 187 (223)
+ .++.+.++++|+ |||+.+++++
T Consensus 195 ~-~~~~~~~~~~p~~~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 195 A-AEPRVSATALQTVGSKGYDGFIMAVVK 222 (223)
T ss_dssp H-HCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred h-hCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence 3 346699999999 9999999986
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=199.24 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=134.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|+++++|..++...++++|||||||+|+ ++++||.+ .+++++|+++|+++++++.|+++++++ |+. |+++.
T Consensus 47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 122 (225)
T 3tr6_A 47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGY--SAIAMGLA-LPKDGTLITCDVDEKSTALAKEYWEKA-GLSDKIGLRL 122 (225)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSH--HHHHHHTT-CCTTCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEeCCcchH--HHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEe
Confidence 6889999999999999999999999999999 88888754 344789999999999999999999999 987 99999
Q ss_pred cchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc-cccc-----------cccccc
Q 027409 102 RQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST-SGLR-----------WQGQGV 162 (223)
Q Consensus 102 GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~-~~~~-----------~~~r~~ 162 (223)
||+.+.++.+ +.||+||+|+.+.+|..+|+.+ +.|+|||++++||+++.|. .... +.. .
T Consensus 123 ~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 200 (225)
T 3tr6_A 123 SPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQ--K 200 (225)
T ss_dssp SCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHH--H
T ss_pred CCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHH--H
Confidence 9999988754 5799999999999999999866 6779999999999998774 1100 111 2
Q ss_pred cccCCCceEEEEeecCCceEEEEEc
Q 027409 163 LDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 163 v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
+. .+++++++++|+|||+++++|+
T Consensus 201 l~-~~~~~~~~~lp~~dG~~~~~k~ 224 (225)
T 3tr6_A 201 VY-KDERVDMILIPIGDGLTLARKK 224 (225)
T ss_dssp HH-HCTTEEEEEECSTTCEEEEEEC
T ss_pred Hh-cCCCeEEEEEEcCCccEEEEEC
Confidence 33 3467999999999999999986
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=190.57 Aligned_cols=157 Identities=25% Similarity=0.263 Sum_probs=133.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|+++++|..+++..++++|||||||+|+ ++++||.+. +++++|+++|+++++++.|+++++++ |+. |+++.
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 114 (210)
T 3c3p_A 39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGC--ASWWFARAI-SISSRVVMIDPDRDNVEHARRMLHDN-GLIDRVELQV 114 (210)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEESCGGGH--HHHHHHTTS-CTTCEEEEEESCHHHHHHHHHHHHHH-SGGGGEEEEE
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEEcCCccH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHC-CCCceEEEEE
Confidence 7899999999999999999999999999999 888888653 34789999999999999999999999 986 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc-c-c--------c-ccccccccccCCCc
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST-S-G--------L-RWQGQGVLDRGTRV 169 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~-~-~--------~-~~~~r~~v~~~~~~ 169 (223)
||+.+.++.+..||+||+|+.+.+|..+++.+ +.|+|||++++||+++.|. . . . .+.. .+. .+++
T Consensus 115 ~d~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~--~l~-~~~~ 191 (210)
T 3c3p_A 115 GDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHEDPETAALREFNH--HLS-RRRD 191 (210)
T ss_dssp SCHHHHHTTCCSEEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC------------CCCHHHH--HHT-TCTT
T ss_pred ecHHHHhccCCCCCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCcccchHHHHHHHHHH--HHh-hCCC
Confidence 99999988763399999999999999999866 5679999999999988763 1 0 0 0111 222 4567
Q ss_pred eEEEEeecCCceEEEEEc
Q 027409 170 VRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 170 ~~t~lLPiGDGl~vs~k~ 187 (223)
+.++++|++||+.+++|+
T Consensus 192 ~~~~~~p~~~G~~~~~~~ 209 (210)
T 3c3p_A 192 FFTTIVPVGNGVLLGYRL 209 (210)
T ss_dssp EEEEEECSTTCEEEEEEC
T ss_pred eEEEEEecCCceEEEEeC
Confidence 999999999999999986
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=200.93 Aligned_cols=116 Identities=16% Similarity=0.017 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--e--EEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--V--SEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~--I~l 99 (223)
+++|++++||.. ++.+|++|||||| || ||+|||. .. +|+|+|||.|+++++.|++||+++ |+ . |++
T Consensus 15 ~v~~~~~~~L~~--~l~~a~~VLEiGt--Gy--STl~lA~--~~-~g~VvtvE~d~~~~~~ar~~l~~~-g~~~~~~I~~ 84 (202)
T 3cvo_A 15 TMPPAEAEALRM--AYEEAEVILEYGS--GG--STVVAAE--LP-GKHVTSVESDRAWARMMKAWLAAN-PPAEGTEVNI 84 (202)
T ss_dssp CSCHHHHHHHHH--HHHHCSEEEEESC--SH--HHHHHHT--ST-TCEEEEEESCHHHHHHHHHHHHHS-CCCTTCEEEE
T ss_pred cCCHHHHHHHHH--HhhCCCEEEEECc--hH--HHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCCceEE
Confidence 799999999999 6679999999998 68 9999986 23 799999999999999999999999 97 4 999
Q ss_pred EecchHHH--------------hc-------CC---CCccEEEEeCCCcccHHHHHH-hccCCCceEEEEeCCCCCC
Q 027409 100 IVRQAEEV--------------MG-------EL---KGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 100 i~GdA~ev--------------L~-------~L---~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DNvl~~g 151 (223)
+.|||.+. ++ ++ ++||||||||+|.+ .|++. ++.+++||+||+||+++++
T Consensus 85 ~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~ 159 (202)
T 3cvo_A 85 VWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRR 159 (202)
T ss_dssp EECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCS
T ss_pred EEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCc
Confidence 99998765 22 12 47999999999885 66764 4677999999999987655
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=190.51 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=134.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
++.|.++++|..++...++++|||||||+|+ +++++|... +++++++++|++++.++.|++++++. |+. |+++.
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~ 118 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEIGTFTGY--SSLCFASAL-PEDGKILCCDVSEEWTNVARKYWKEN-GLENKIFLKL 118 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTCH--HHHHHHHHS-CTTCEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEE
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCH--HHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCEEEEE
Confidence 6899999999999999999999999999999 788887653 34689999999999999999999998 986 99999
Q ss_pred cchHHHhcCC-----------------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc---ccc-----
Q 027409 102 RQAEEVMGEL-----------------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST---SGL----- 155 (223)
Q Consensus 102 GdA~evL~~L-----------------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~---~~~----- 155 (223)
||+.+.++.+ ++||+||+|+.+.+|..+|+.+ +.++|||++++||+++.|. +..
T Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~ 198 (239)
T 2hnk_A 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST 198 (239)
T ss_dssp SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHH
T ss_pred CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHH
Confidence 9999877644 5799999999999999999866 6679999999999988763 100
Q ss_pred ----ccccccccccCCCceEEEEeecCCceEEEEEcc
Q 027409 156 ----RWQGQGVLDRGTRVVRSVFLPVGQGLDIVHVGS 188 (223)
Q Consensus 156 ----~~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k~~ 188 (223)
.+.. .+. .++.+.++++|+|||+++++|++
T Consensus 199 ~~~~~~~~--~~~-~~~~~~~~~~p~~~g~~~~~~~~ 232 (239)
T 2hnk_A 199 VGIRKFNE--LVY-NDSLVDVSLVPIADGVSLVRKRL 232 (239)
T ss_dssp HHHHHHHH--HHH-HCTTEEEEEECSTTCEEEEEECC
T ss_pred HHHHHHHH--HHh-hCCCeEEEEEEcCCceEeeeehh
Confidence 0111 222 34679999999999999999985
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=180.67 Aligned_cols=159 Identities=22% Similarity=0.178 Sum_probs=130.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+++|+++++|..++...++++|||||||+|+ +++++|... ++++|+++|+++++++.|++++++. |+. |+++.
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~--~~~~la~~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 111 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKMAAPARILEIGTAIGY--SAIRMAQAL--PEATIVSIERDERRYEEAHKHVKAL-GLESRIELLF 111 (233)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHHHC--TTCEEEEECCCHHHHHHHHHHHHHT-TCTTTEEEEC
T ss_pred CcCHHHHHHHHHHHhccCCCEEEEecCCCcH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 7899999999999999999999999999999 788888653 3689999999999999999999999 985 99999
Q ss_pred cchHHHhcCC---CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--ccc----c-------ccc-cccc
Q 027409 102 RQAEEVMGEL---KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SGL----R-------WQG-QGVL 163 (223)
Q Consensus 102 GdA~evL~~L---~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~~----~-------~~~-r~~v 163 (223)
||+.+.++.+ ++||+||+|+.+.+|..+++.+ +.++|||+++++|+++.+. ... . .+. ...+
T Consensus 112 ~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (233)
T 2gpy_A 112 GDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWL 191 (233)
T ss_dssp SCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC-------------------------CTT
T ss_pred CCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccccccchhHHHHHHHHHHHHH
Confidence 9999877654 4799999999999999999866 5679999999999988763 110 0 000 0123
Q ss_pred ccCCCceEEEEeecCCceEEEEEcc
Q 027409 164 DRGTRVVRSVFLPVGQGLDIVHVGS 188 (223)
Q Consensus 164 ~~~~~~~~t~lLPiGDGl~vs~k~~ 188 (223)
. .++.+.++++|++||+.+++++.
T Consensus 192 ~-~~~~~~~~~~p~~dG~~~~~~~~ 215 (233)
T 2gpy_A 192 L-EHPQYDTRIFPVGDGIAISIKRE 215 (233)
T ss_dssp T-TCTTEEEEEECSTTCEEEEEEC-
T ss_pred H-hCCCeEEEEEEcCCeEEEEEEcC
Confidence 2 34679999999999999999873
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-23 Score=181.64 Aligned_cols=155 Identities=7% Similarity=-0.083 Sum_probs=119.3
Q ss_pred CCcHHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCC---CCcEEEEEeCCc-----------------
Q 027409 24 IKESGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARH---TCARHVCIVPDE----------------- 79 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~---~~g~i~TIE~d~----------------- 79 (223)
.+.++.+.+|+.|++.. .|++||||||+.|| |+++||.+..+ ++++|+++|..+
T Consensus 85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~--Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~ 162 (282)
T 2wk1_A 85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGG--ACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMA 162 (282)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSH--HHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchH--HHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccc
Confidence 57788999999999874 49999999999999 88888876532 478999999642
Q ss_pred ---------hHHHHHHHHHHhhcCc--e-EEEEecchHHHhcCC--CCccEEEEeCCC-cccHHHHHHhcc-CCCceEEE
Q 027409 80 ---------RSRLAYVKAMYDVVGW--V-SEVIVRQAEEVMGEL--KGVDFLVVDCTS-KDFARVLRFARF-SNKGAVLA 143 (223)
Q Consensus 80 ---------e~~~~Ar~~~~~a~G~--~-I~li~GdA~evL~~L--~~fDfVFIDa~K-~~Y~~~f~~~~~-l~~GgvIV 143 (223)
..++.|++||+++ |+ . |+++.|||.|+|+++ .+||||||||+| +.|..+|+.+.+ ++|||+||
T Consensus 163 ~~~~~~~~~~~~~~ar~n~~~~-gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 163 LHRRNSVLAVSEEEVRRNFRNY-DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp GGGGHHHHCCCHHHHHHHHHHT-TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cccccccchhHHHHHHHHHHHc-CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEE
Confidence 2578899999999 98 3 999999999999987 379999999999 457899997755 59999999
Q ss_pred EeCCCC-CCccccccccccccccCCCceEEEEeecCCceEEEEE
Q 027409 144 FKNAFQ-RSTSGLRWQGQGVLDRGTRVVRSVFLPVGQGLDIVHV 186 (223)
Q Consensus 144 ~DNvl~-~g~~~~~~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k 186 (223)
+||+.+ .|+. .+++. ..++ .++...+++++-+...-+|
T Consensus 242 ~DD~~~~~G~~-~Av~E--f~~~--~~i~~~i~~~~~~~v~~rk 280 (282)
T 2wk1_A 242 VDDYMMCPPCK-DAVDE--YRAK--FDIADELITIDRDGVYWQR 280 (282)
T ss_dssp ESSCTTCHHHH-HHHHH--HHHH--TTCCSCCEECSSSCEEEEC
T ss_pred EcCCCCCHHHH-HHHHH--HHHh--cCCceEEEEecCEEEEEEe
Confidence 999854 5431 11221 1111 2256668888766555444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=136.71 Aligned_cols=117 Identities=9% Similarity=0.061 Sum_probs=98.1
Q ss_pred CCc-HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhc--CCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKE-SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAA--RHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~-p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~--~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
+.. |+++.+|..++...++++|||||||+|| ++++||... ..++++|++||+++++++.|+ .. +-.|+++
T Consensus 63 ~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~--~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~-~~~v~~~ 135 (236)
T 2bm8_A 63 MLKDPDTQAVYHDMLWELRPRTIVELGVYNGG--SLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SD-MENITLH 135 (236)
T ss_dssp CCSCHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GG-CTTEEEE
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCH--HHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----cc-CCceEEE
Confidence 455 9999999999999999999999999999 788887642 245789999999999999887 22 3239999
Q ss_pred ecchHHH--hcCC-C-CccEEEEeCCCcccHHHHHHh-c-cCCCceEEEEeCC
Q 027409 101 VRQAEEV--MGEL-K-GVDFLVVDCTSKDFARVLRFA-R-FSNKGAVLAFKNA 147 (223)
Q Consensus 101 ~GdA~ev--L~~L-~-~fDfVFIDa~K~~Y~~~f~~~-~-~l~~GgvIV~DNv 147 (223)
.||+.+. ++.+ + +||+||+|+...+|..+|..+ + .|+|||+++++++
T Consensus 136 ~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 136 QGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9999875 5554 3 699999999998999999855 4 7899999999986
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=130.87 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=91.5
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCC
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKG 113 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~ 113 (223)
.|++...+.+|||||||+|+ .+++.+|. .++++|++||+|+++++.||++++++ |+. |+++.|||.+. + -++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~-~ta~~lA~---~~ga~V~gIDis~~~l~~Ar~~~~~~-gl~~v~~v~gDa~~l-~-d~~ 188 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLP-LTGILLSH---VYGMRVNVVEIEPDIAELSRKVIEGL-GVDGVNVITGDETVI-D-GLE 188 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSC-HHHHHHHH---TTCCEEEEEESSHHHHHHHHHHHHHH-TCCSEEEEESCGGGG-G-GCC
T ss_pred HHcCCCCcCEEEEECCCccH-HHHHHHHH---ccCCEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEECchhhC-C-CCC
Confidence 36788999999999999874 25566653 24789999999999999999999999 987 99999999984 4 258
Q ss_pred ccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
||+||+++...++.++|+.+ +.++|||.+++.+.
T Consensus 189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99999999999999999865 67899999999884
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=118.57 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..++....+-..+......+|||||||+|+ .++.+|.. .+.++++.+|+++++++.|++++++. |+. ++++.|
T Consensus 23 ~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~--~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~ 97 (204)
T 3e05_A 23 ITKQEVRAVTLSKLRLQDDLVMWDIGAGSAS--VSIEASNL--MPNGRIFALERNPQYLGFIRDNLKKF-VARNVTLVEA 97 (204)
T ss_dssp SCCHHHHHHHHHHTTCCTTCEEEEETCTTCH--HHHHHHHH--CTTSEEEEEECCHHHHHHHHHHHHHH-TCTTEEEEEC
T ss_pred CChHHHHHHHHHHcCCCCCCEEEEECCCCCH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 4555665655555666778899999999998 77777754 34689999999999999999999999 987 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+.+.++.++.||+||++....++..+++.+ +.++|||.+++....
T Consensus 98 d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 98 FAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred ChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999888777899999999888899999865 678999999997653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=116.88 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+..+++...+-..+......+|||||||+|+ .++.+|.. +++|+.+|+++++++.|++++++. |+. ++++.
T Consensus 38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~--~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~-g~~~~v~~~~ 110 (204)
T 3njr_A 38 ITKSPMRALTLAALAPRRGELLWDIGGGSGS--VSVEWCLA----GGRAITIEPRADRIENIQKNIDTY-GLSPRMRAVQ 110 (204)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEETCTTCH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEecCCCCH--HHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCEEEEe
Confidence 4555666666666667778899999999998 77777653 689999999999999999999998 987 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
||+.+.++.+..||+||+++.. ... +++.+ +.|+|||.+++....
T Consensus 111 ~d~~~~~~~~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 111 GTAPAALADLPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCTTGGGTTSCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CchhhhcccCCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 9999988877789999999844 344 77755 678999999987764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=122.77 Aligned_cols=112 Identities=14% Similarity=-0.003 Sum_probs=88.5
Q ss_pred HHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 32 LLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 32 fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
+...+++. .+..+|||||||.|+ ++.+++. ....++|.||++|++++.|+++.++. +..++++.|||.+++.
T Consensus 49 ~m~~~a~~~~~~G~rVLdiG~G~G~--~~~~~~~---~~~~~v~~id~~~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 49 YMHALAAAASSKGGRVLEVGFGMAI--AASKVQE---APIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTSH--HHHHHTT---SCEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGG
T ss_pred HHHHHHHhhccCCCeEEEECCCccH--HHHHHHH---hCCcEEEEEeCCHHHHHHHHHHHhhC-CCceEEEeehHHhhcc
Confidence 44444444 345799999999998 6767753 22368999999999999999999998 8889999999999988
Q ss_pred CC--CCccEEEEeCCCccc--------HHHHH-HhccCCCceEEEEeCCCC
Q 027409 110 EL--KGVDFLVVDCTSKDF--------ARVLR-FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 110 ~L--~~fDfVFIDa~K~~Y--------~~~f~-~~~~l~~GgvIV~DNvl~ 149 (223)
.+ ..||.||.|+....+ ..+++ ..++|||||++++.|...
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~ 173 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 173 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCC
Confidence 77 379999999865433 45665 347889999999998653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=130.80 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=97.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCC-CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L-~~ 113 (223)
..++++|||||||.|+ ++.+++. ..+.++|+.+|+|++.++.|++++... .|+ . |+++.|||.+.++.. +.
T Consensus 106 ~~~~~~VLdIG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~ 181 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGG--ILREVLK--HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNE 181 (314)
T ss_dssp SSSCCEEEEESCTTSH--HHHHHTT--CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTC
T ss_pred CCCCCEEEEEcCCcCH--HHHHHHH--cCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCC
Confidence 4588999999999998 7777753 335689999999999999999999753 133 2 999999999988654 47
Q ss_pred ccEEEEeC------CCccc-HHHHHHh-ccCCCceEEEEeC--CCCCCc--cccccccccccccCCCceEEEEeec---C
Q 027409 114 VDFLVVDC------TSKDF-ARVLRFA-RFSNKGAVLAFKN--AFQRST--SGLRWQGQGVLDRGTRVVRSVFLPV---G 178 (223)
Q Consensus 114 fDfVFIDa------~K~~Y-~~~f~~~-~~l~~GgvIV~DN--vl~~g~--~~~~~~~r~~v~~~~~~~~t~lLPi---G 178 (223)
||+||+|+ .+..| .++|+.+ +.|+|||++++++ .+.... .......+.+. ....+.++.+|. |
T Consensus 182 fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF--~~v~~~~~~iP~~~~g 259 (314)
T 2b2c_A 182 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIF--PAVTYAQSIVSTYPSG 259 (314)
T ss_dssp EEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC--SEEEEEEEECTTSGGG
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHC--CcceEEEEEecCcCCC
Confidence 99999998 34556 7888866 5679999999987 332211 00000000011 123366778888 5
Q ss_pred C-ceEEEEEc
Q 027409 179 Q-GLDIVHVG 187 (223)
Q Consensus 179 D-Gl~vs~k~ 187 (223)
+ |+.++.+.
T Consensus 260 ~~g~~~ask~ 269 (314)
T 2b2c_A 260 SMGYLICAKN 269 (314)
T ss_dssp EEEEEEEESS
T ss_pred ceEEEEEeCC
Confidence 6 78888765
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=117.05 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|.....+..++...+..+|||||||+|+ .+++++.. +++++.+|+++++++.|++++++. |+. ++++.|
T Consensus 60 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~--~~~~la~~----~~~v~~vD~~~~~~~~a~~~~~~~-~~~~v~~~~~ 132 (210)
T 3lbf_A 60 ISQPYMVARMTELLELTPQSRVLEIGTGSGY--QTAILAHL----VQHVCSVERIKGLQWQARRRLKNL-DLHNVSTRHG 132 (210)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEES
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEEcCCCCH--HHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHc-CCCceEEEEC
Confidence 4477777777777777888999999999998 77777754 589999999999999999999998 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.+..-++||+|++++....+++ +..+.++|||.+++.
T Consensus 133 d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 133 DGWQGWQARAPFDAIIVTAAPPEIPT--ALMTQLDEGGILVLP 173 (210)
T ss_dssp CGGGCCGGGCCEEEEEESSBCSSCCT--HHHHTEEEEEEEEEE
T ss_pred CcccCCccCCCccEEEEccchhhhhH--HHHHhcccCcEEEEE
Confidence 99986655458999999988777664 345677999988874
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=109.68 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=87.6
Q ss_pred HHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 31 ELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
.++..+... ...++|||+|||+|+ .+++++. . ..++|+.+|+++++++.|+++++.. |+. ++++.||+.+.
T Consensus 32 ~l~~~l~~~~~~~~~~vLDlgcG~G~--~~~~~~~--~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~ 105 (189)
T 3p9n_A 32 SLFNIVTARRDLTGLAVLDLYAGSGA--LGLEALS--R-GAASVLFVESDQRSAAVIARNIEAL-GLSGATLRRGAVAAV 105 (189)
T ss_dssp HHHHHHHHHSCCTTCEEEEETCTTCH--HHHHHHH--T-TCSEEEEEECCHHHHHHHHHHHHHH-TCSCEEEEESCHHHH
T ss_pred HHHHHHHhccCCCCCEEEEeCCCcCH--HHHHHHH--C-CCCeEEEEECCHHHHHHHHHHHHHc-CCCceEEEEccHHHH
Confidence 344444443 577899999999998 6766553 2 3468999999999999999999999 887 99999999998
Q ss_pred hcCC--CCccEEEEeCCCcc----cHHHHHHh-c--cCCCceEEEEeCC
Q 027409 108 MGEL--KGVDFLVVDCTSKD----FARVLRFA-R--FSNKGAVLAFKNA 147 (223)
Q Consensus 108 L~~L--~~fDfVFIDa~K~~----Y~~~f~~~-~--~l~~GgvIV~DNv 147 (223)
++.+ +.||+||+|..-.. +.+.++.+ + .|+|||++++..-
T Consensus 106 ~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 106 VAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 8654 48999999975443 56666654 4 6799999998764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=116.04 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=84.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc--CC-CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG--EL-KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~--~L-~~fD 115 (223)
.+.++|||||||+|+ .+++||.. .++++|+.+|+++++++.|++++++. |++ |+++.||+.+... .. +.||
T Consensus 69 ~~~~~vLDiG~G~G~--~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 69 NQVNTICDVGAGAGF--PSLPIKIC--FPHLHVTIVDSLNKRITFLEKLSEAL-QLENTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GGCCEEEEECSSSCT--THHHHHHH--CTTCEEEEEESCHHHHHHHHHHHHHH-TCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCCEEEEecCCCCH--HHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEeccHHHhcccccccCCcc
Confidence 477899999999999 77788753 34689999999999999999999999 987 9999999988652 23 4799
Q ss_pred EEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+|+.++ ..++..+++.+ +.|+|||.+++-
T Consensus 144 ~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 144 IVTARA-VARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 999998 57789999876 667999998763
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-14 Score=125.95 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=100.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcCc--e-EEEEecchHHHhcCC-C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVGW--V-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G~--~-I~li~GdA~evL~~L-~ 112 (223)
..++++|||||||+|+ .+++++. ..+.++|+.+|+|++.++.|++++.. . |+ . ++++.|||.+.|+.. +
T Consensus 93 ~~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~rv~v~~~Da~~~l~~~~~ 167 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGG--VLREVVK--HPSVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQD 167 (304)
T ss_dssp SSSCCEEEEEECTTSH--HHHHHTT--CTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSS
T ss_pred CCCCCEEEEECCCchH--HHHHHHH--cCCCCEEEEEECCHHHHHHHHHHhHHhhc-ccCCCcEEEEECcHHHHHhhCCC
Confidence 3588999999999998 7777753 33468999999999999999999986 4 55 2 999999999988765 4
Q ss_pred CccEEEEeCCCc-------ccHHHHHHh-ccCCCceEEEEeC-CCCCCcc---ccccccccccccCCCceEEEEeec---
Q 027409 113 GVDFLVVDCTSK-------DFARVLRFA-RFSNKGAVLAFKN-AFQRSTS---GLRWQGQGVLDRGTRVVRSVFLPV--- 177 (223)
Q Consensus 113 ~fDfVFIDa~K~-------~Y~~~f~~~-~~l~~GgvIV~DN-vl~~g~~---~~~~~~r~~v~~~~~~~~t~lLPi--- 177 (223)
.||+||+|+... .+.++|+.+ +.|+|||++++++ ..+...+ ......+.+. ....+.++.+|.
T Consensus 168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f--~~v~~~~~~vP~~~~ 245 (304)
T 2o07_A 168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLF--PVVAYAYCTIPTYPS 245 (304)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHC--SEEEEEEEECTTSGG
T ss_pred CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhC--CCceeEEEEeccccC
Confidence 799999998753 356788766 5679999999998 3343311 1100000011 123366677887
Q ss_pred C-CceEEEEEc
Q 027409 178 G-QGLDIVHVG 187 (223)
Q Consensus 178 G-DGl~vs~k~ 187 (223)
| .|+.++.+.
T Consensus 246 g~~g~~~as~~ 256 (304)
T 2o07_A 246 GQIGFMLCSKN 256 (304)
T ss_dssp GEEEEEEEESS
T ss_pred cceEEEEEeCC
Confidence 4 378877765
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=110.94 Aligned_cols=103 Identities=9% Similarity=0.126 Sum_probs=84.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fD 115 (223)
..+.++|||+|||+|+ .+++++.. ..++++.+|+++++++.|+++++.. |+. ++++.+|+.+.++.+ +.||
T Consensus 29 ~~~~~~vLDlGcG~G~--~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~fD 102 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGG--LAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMT-KAENRFTLLKMEAERAIDCLTGRFD 102 (177)
T ss_dssp CCCSCEEEEETCTTCH--HHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTT-TCGGGEEEECSCHHHHHHHBCSCEE
T ss_pred hcCCCeEEEeCCCCCH--HHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECcHHHhHHhhcCCCC
Confidence 4567899999999998 67777642 3469999999999999999999998 986 999999999987755 4799
Q ss_pred EEEEeCC--CcccHHHHHHh---ccCCCceEEEEeCC
Q 027409 116 FLVVDCT--SKDFARVLRFA---RFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~--K~~Y~~~f~~~---~~l~~GgvIV~DNv 147 (223)
+||.|.. ...+.+.++.+ +.|+|||++++..-
T Consensus 103 ~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 103 LVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 9999965 34566677655 56799999988653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=105.54 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~ 101 (223)
...++..+.+...+......+|||+|||.|+ .++.++.. .++++.+|.+++.++.|+++++.. |+ . ++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~--~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~ 88 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGG--VTLELAGR----VRRVYAIDRNPEAISTTEMNLQRH-GLGDNVTLME 88 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSH--HHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHT-TCCTTEEEEE
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHh----cCEEEEEECCHHHHHHHHHHHHHc-CCCcceEEEe
Confidence 3455666666666677788999999999998 67666532 279999999999999999999998 98 3 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+|+.+.++.++.||+|+++..-.+...+++.+ +.++|||.++....
T Consensus 89 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 89 GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp SCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999888777899999998777888899865 56799999887654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=110.79 Aligned_cols=109 Identities=11% Similarity=0.107 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~ 110 (223)
++..+......++|||+|||+|+ .+++++.. . ..+|+.+|+++++++.|+++++.. |+. |+++.+|+.+.++.
T Consensus 45 l~~~l~~~~~~~~vLDlgcG~G~--~~~~l~~~--~-~~~V~~vD~s~~~l~~a~~~~~~~-~~~~v~~~~~D~~~~~~~ 118 (202)
T 2fpo_A 45 LFNWLAPVIVDAQCLDCFAGSGA--LGLEALSR--Y-AAGATLIEMDRAVSQQLIKNLATL-KAGNARVVNSNAMSFLAQ 118 (202)
T ss_dssp HHHHHHHHHTTCEEEETTCTTCH--HHHHHHHT--T-CSEEEEECSCHHHHHHHHHHHHHT-TCCSEEEECSCHHHHHSS
T ss_pred HHHHHHhhcCCCeEEEeCCCcCH--HHHHHHhc--C-CCEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEECCHHHHHhh
Confidence 33333332367899999999998 77765532 1 258999999999999999999999 986 99999999998876
Q ss_pred C-CCccEEEEeCC--CcccHHHHHHhc---cCCCceEEEEeC
Q 027409 111 L-KGVDFLVVDCT--SKDFARVLRFAR---FSNKGAVLAFKN 146 (223)
Q Consensus 111 L-~~fDfVFIDa~--K~~Y~~~f~~~~---~l~~GgvIV~DN 146 (223)
. +.||+||+|.. ...+.++++.+. .++|||++++..
T Consensus 119 ~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 119 KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence 5 47999999976 567777887652 479999887664
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-13 Score=106.25 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAE 105 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ 105 (223)
+..+.+...+......+|||||||+|+ .++.++.. .++++++.+|+++++++.|++++++. |+. + ++.+|+.
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G~G~--~~~~l~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~-~~~~d~~ 85 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGGSGS--IAIEWLRS--TPQTTAVCFEISEERRERILSNAINL-GVSDRI-AVQQGAP 85 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTTTTH--HHHHHHTT--SSSEEEEEECSCHHHHHHHHHHHHTT-TCTTSE-EEECCTT
T ss_pred HHHHHHHHHhcccCCCeEEEeCCCCCH--HHHHHHHH--CCCCeEEEEeCCHHHHHHHHHHHHHh-CCCCCE-EEecchH
Confidence 344444444455566799999999998 77777643 24689999999999999999999998 886 8 8999999
Q ss_pred HHhcCC-CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 106 EVMGEL-KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 106 evL~~L-~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.++.. +.||+||++..-.+ ..+++.+ +.++|||.++......
T Consensus 86 ~~~~~~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 86 RAFDDVPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp GGGGGCCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred hhhhccCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeecc
Confidence 888877 68999999887655 7788755 6789999999876543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=120.98 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=86.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCC--CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGEL--KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L--~~ 113 (223)
.++++|||||||.|+ .+++++. ..+.++|+++|+|+++++.|++++.+. .|+ . |+++.||+.+.++.+ +.
T Consensus 119 ~~~~~VLdIG~G~G~--~a~~la~--~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGG--VLREVAR--HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSH--HHHHHTT--CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccH--HHHHHHH--cCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence 588999999999998 7777753 334679999999999999999999762 144 2 999999999998775 47
Q ss_pred ccEEEEeCCCc----c---cHHHHHHh-ccCCCceEEEEe-CCCCCC
Q 027409 114 VDFLVVDCTSK----D---FARVLRFA-RFSNKGAVLAFK-NAFQRS 151 (223)
Q Consensus 114 fDfVFIDa~K~----~---Y~~~f~~~-~~l~~GgvIV~D-Nvl~~g 151 (223)
||+||+|+... . +.++|+.+ +.|+|||+++++ +..+.+
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 241 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH 241 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 99999998521 1 67888866 567999999997 444433
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=120.18 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=78.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhc------CCC----CcEEEEEeCCc--------------hHHHHHHHHHHh---
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAA------RHT----CARHVCIVPDE--------------RSRLAYVKAMYD--- 91 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~------~~~----~g~i~TIE~d~--------------e~~~~Ar~~~~~--- 91 (223)
..++.+|||||+|+|| ++++++.+. .+. ..+++++|.+| +....|+++++.
T Consensus 58 ~~~~~~ILEiGfGtG~--n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~ 135 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGL--NFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPM 135 (257)
T ss_dssp SSSEEEEEESCCTTSH--HHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCC
T ss_pred CCCCCEEEEECCChHH--HHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccc
Confidence 3467899999999999 666655443 332 25899999998 445577888775
Q ss_pred ---------h-cCce-EEEEecchHHHhcCCC-----CccEEEEeCCC--cc----cHHHHHHh-ccCCCceEEEE
Q 027409 92 ---------V-VGWV-SEVIVRQAEEVMGELK-----GVDFLVVDCTS--KD----FARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 92 ---------a-~G~~-I~li~GdA~evL~~L~-----~fDfVFIDa~K--~~----Y~~~f~~~-~~l~~GgvIV~ 144 (223)
. -|.. ++++.|||.++|+.+. .||.||+|+.. .+ |.++|+.+ +.++|||++++
T Consensus 136 ~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 136 PLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1 0222 8999999999999873 69999999843 23 78899866 67799999997
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=102.50 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
...+...+.+...+...+..+|||+|||+|+ .++.++. .+.+++.+|.++++++.|++++++. |+. ++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~ 90 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGG--MTVEIAK----RCKFVYAIDYLDGAIEVTKQNLAKF-NIKNCQIIKG 90 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSH--HHHHHHT----TSSEEEEEECSHHHHHHHHHHHHHT-TCCSEEEEES
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCH--HHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEEC
Confidence 4456666666666677788899999999998 6767753 4689999999999999999999999 987 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
|+.+.++. +.||+|+.+.. .+...+++.+..+ |||.++....
T Consensus 91 d~~~~~~~-~~~D~i~~~~~-~~~~~~l~~~~~~-~gG~l~~~~~ 132 (183)
T 2yxd_A 91 RAEDVLDK-LEFNKAFIGGT-KNIEKIIEILDKK-KINHIVANTI 132 (183)
T ss_dssp CHHHHGGG-CCCSEEEECSC-SCHHHHHHHHHHT-TCCEEEEEES
T ss_pred CccccccC-CCCcEEEECCc-ccHHHHHHHHhhC-CCCEEEEEec
Confidence 99996665 58999999988 8888888877544 8888877653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=109.07 Aligned_cols=110 Identities=10% Similarity=0.127 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--e-EEEEecchHHH
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--V-SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~-I~li~GdA~ev 107 (223)
.++..+....+.++|||+|||+|. .+++++. . ..++|+.+|+++++++.|++|++.. |+ . ++++.||+.+.
T Consensus 43 ~l~~~l~~~~~~~~vLDlGcGtG~--~~~~~~~--~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~~ 116 (201)
T 2ift_A 43 TLFNWLMPYIHQSECLDGFAGSGS--LGFEALS--R-QAKKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDF 116 (201)
T ss_dssp HHHHHHHHHHTTCEEEETTCTTCH--HHHHHHH--T-TCSEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHH
T ss_pred HHHHHHHHhcCCCeEEEcCCccCH--HHHHHHH--c-cCCEEEEEECCHHHHHHHHHHHHHh-CCCccceEEEECCHHHH
Confidence 334444433477899999999998 6766543 2 1368999999999999999999998 98 5 99999999998
Q ss_pred hcCC--CC-ccEEEEeCC--CcccHHHHHHh---ccCCCceEEEEeC
Q 027409 108 MGEL--KG-VDFLVVDCT--SKDFARVLRFA---RFSNKGAVLAFKN 146 (223)
Q Consensus 108 L~~L--~~-fDfVFIDa~--K~~Y~~~f~~~---~~l~~GgvIV~DN 146 (223)
++.+ +. ||+||+|.. .+.+.++++.+ +.|+|||++++..
T Consensus 117 ~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~ 163 (201)
T 2ift_A 117 LKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET 163 (201)
T ss_dssp TTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEE
Confidence 8764 47 999999976 56677888765 3579999887755
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=110.79 Aligned_cols=128 Identities=22% Similarity=0.189 Sum_probs=103.3
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
.+|...+.....++.|....++..++......+|||+|||+|+ .+++++... .++++++++|+++++++.|++++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~--~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~ 140 (255)
T 3mb5_A 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGA--LTLFLANIV-GPEGRVVSYEIREDFAKLAWENIKW 140 (255)
T ss_dssp HHHHHHSCCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHhhCccccccccHhHHHHHHHhhCCCCCCEEEEecCCchH--HHHHHHHHh-CCCeEEEEEecCHHHHHHHHHHHHH
Confidence 4566666666667888888888888888888999999999998 777777543 3468999999999999999999999
Q ss_pred hcCce--EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 92 VVGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 92 a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. |+. ++++.+|+.+.++. ..||+||+|.. ....+++.+ +.++|||.+++..
T Consensus 141 ~-~~~~~v~~~~~d~~~~~~~-~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 141 A-GFDDRVTIKLKDIYEGIEE-ENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp H-TCTTTEEEECSCGGGCCCC-CSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred c-CCCCceEEEECchhhccCC-CCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence 9 986 99999999976543 46999999864 445677755 6679999998754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=110.13 Aligned_cols=112 Identities=10% Similarity=-0.044 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccC-cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTH-GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~-~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++...++|.......+..+|||+||| +|+ .++.++... +++++.+|+++++++.|+++++.. |+.++++.||+
T Consensus 40 p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~--~~~~la~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~ 113 (230)
T 3evz_A 40 TTPISRYIFLKTFLRGGEVALEIGTGHTAM--MALMAEKFF---NCKVTATEVDEEFFEYARRNIERN-NSNVRLVKSNG 113 (230)
T ss_dssp CCHHHHHHHHHTTCCSSCEEEEECCTTTCH--HHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred CCCchhhhHhHhhcCCCCEEEEcCCCHHHH--HHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHh-CCCcEEEeCCc
Confidence 33445666444445677899999999 998 777777543 579999999999999999999998 88899999997
Q ss_pred HH--HhcCCCCccEEEEeC----------------------CCcccHHHHHHh-ccCCCceEEEE
Q 027409 105 EE--VMGELKGVDFLVVDC----------------------TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 105 ~e--vL~~L~~fDfVFIDa----------------------~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.. -++. +.||+|+.|. ..+.|..+++.+ +.|+|||.+++
T Consensus 114 ~~~~~~~~-~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 114 GIIKGVVE-GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp CSSTTTCC-SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhhhccc-CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 43 2222 5799999882 122357778755 66799999887
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-13 Score=108.22 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=92.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|.....+..++......+|||||||+|+ .++.++... .+.++++.+|+++++++.|++++++. |+. ++++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~v~~~~~ 135 (215)
T 2yxe_A 60 ISAIHMVGMMCELLDLKPGMKVLEIGTGCGY--HAAVTAEIV-GEDGLVVSIERIPELAEKAERTLRKL-GYDNVIVIVG 135 (215)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHH-TCTTEEEEES
T ss_pred eCcHHHHHHHHHhhCCCCCCEEEEECCCccH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCeEEEEC
Confidence 4457777777666777788899999999998 677777654 23479999999999999999999998 887 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++...+||+|+++..-.+..+ +..+.++|||.+++.
T Consensus 136 d~~~~~~~~~~fD~v~~~~~~~~~~~--~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 136 DGTLGYEPLAPYDRIYTTAAGPKIPE--PLIRQLKDGGKLLMP 176 (215)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCCH--HHHHTEEEEEEEEEE
T ss_pred CcccCCCCCCCeeEEEECCchHHHHH--HHHHHcCCCcEEEEE
Confidence 99765543357999999987766553 344677999988875
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-13 Score=117.26 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=83.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcC-c--e-EEEEecchHHHhcCC-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVG-W--V-SEVIVRQAEEVMGEL- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G-~--~-I~li~GdA~evL~~L- 111 (223)
..++++|||||||.|+ .+.+++. ..+..+++.+|+|++.++.|++++.. . | + . ++++.||+.+.++..
T Consensus 75 ~~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~ 149 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGA--TLREVLK--HPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTE 149 (314)
T ss_dssp SSCCCEEEEEECTTSH--HHHHHTT--STTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCC
T ss_pred CCCCCeEEEEcCCcCH--HHHHHHh--cCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcC
Confidence 4588999999999998 6666653 33467999999999999999999976 3 4 3 3 999999999988754
Q ss_pred CCccEEEEeCCCcc----------cHHHHHHh-ccCCCceEEEEe
Q 027409 112 KGVDFLVVDCTSKD----------FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 112 ~~fDfVFIDa~K~~----------Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+.||+|++|+.... +.++|+.+ +.|+|||++++.
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 47999999986544 57889866 567999999986
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=105.29 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=81.1
Q ss_pred HHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 31 ELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
++...+++. ....+|||||||+|+ .+++||.. +++|+.+|+++++++.|++++++. |+. ++++.+++.+.
T Consensus 10 ~~~~~~l~~~~~~~~~vLDiGcG~G~--~~~~la~~----~~~v~~vD~s~~~l~~a~~~~~~~-~~~~v~~~~~~~~~l 82 (185)
T 3mti_A 10 HMSHDFLAEVLDDESIVVDATMGNGN--DTAFLAGL----SKKVYAFDVQEQALGKTSQRLSDL-GIENTELILDGHENL 82 (185)
T ss_dssp HHHHHHHHTTCCTTCEEEESCCTTSH--HHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHH-TCCCEEEEESCGGGG
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEeCcHHHH
Confidence 344444443 246799999999998 78787642 789999999999999999999999 987 99999877664
Q ss_pred hcCC-CCccEEEEeC------------CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 108 MGEL-KGVDFLVVDC------------TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 108 L~~L-~~fDfVFIDa------------~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.... ++||+|+.+. ..+.....++.+ +.|+|||.++.-
T Consensus 83 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp GGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3333 4799999983 123334556544 677999988774
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=110.53 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|.....+..++......+|||||||+|+ .++.++.... ++++++|++++.++.|+++++.. |+. ++++.|
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~--~~~~la~~~~---~~v~~vD~~~~~~~~a~~~~~~~-~~~~v~~~~~ 147 (235)
T 1jg1_A 74 VSAPHMVAIMLEIANLKPGMNILEVGTGSGW--NAALISEIVK---TDVYTIERIPELVEFAKRNLERA-GVKNVHVILG 147 (235)
T ss_dssp ECCHHHHHHHHHHHTCCTTCCEEEECCTTSH--HHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHT-TCCSEEEEES
T ss_pred eccHHHHHHHHHhcCCCCCCEEEEEeCCcCH--HHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEC
Confidence 3456666666666677788899999999998 7777775432 78999999999999999999998 987 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+...++.-.+||+|++++......+ +..+.++|||.+++.
T Consensus 148 d~~~~~~~~~~fD~Ii~~~~~~~~~~--~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 148 DGSKGFPPKAPYDVIIVTAGAPKIPE--PLIEQLKIGGKLIIP 188 (235)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCCH--HHHHTEEEEEEEEEE
T ss_pred CcccCCCCCCCccEEEECCcHHHHHH--HHHHhcCCCcEEEEE
Confidence 99444443346999999987766554 345677899988764
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=118.40 Aligned_cols=103 Identities=12% Similarity=-0.008 Sum_probs=83.8
Q ss_pred cCCC--eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCc
Q 027409 40 WNAK--LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak--~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~f 114 (223)
-+++ +||+||||.|+ .+.+++.. .++.+|+.+|+|++.++.||++|... ... ++++.|||.+.+..+ +.|
T Consensus 86 p~p~~~rVLdIG~G~G~--la~~la~~--~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~f 160 (317)
T 3gjy_A 86 QDASKLRITHLGGGACT--MARYFADV--YPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASR 160 (317)
T ss_dssp SCGGGCEEEEESCGGGH--HHHHHHHH--STTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCE
T ss_pred CCCCCCEEEEEECCcCH--HHHHHHHH--CCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCC
Confidence 3555 99999999998 77777643 24679999999999999999999764 444 999999999999876 479
Q ss_pred cEEEEeCCCccc-------HHHHHHh-ccCCCceEEEEeCC
Q 027409 115 DFLVVDCTSKDF-------ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 115 DfVFIDa~K~~Y-------~~~f~~~-~~l~~GgvIV~DNv 147 (223)
|+||+|+....+ .++|+.+ +.|++||+++++..
T Consensus 161 DvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 161 DVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999865433 6788866 56799999998764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=102.35 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=82.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC----CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL----KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L----~~ 113 (223)
...++|||+|||+|+ .+++++. . ..++++.+|.++++++.|+++++.. |+. ++++.||+.+.++.+ +.
T Consensus 43 ~~~~~vLD~GcG~G~--~~~~~~~--~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~ 116 (187)
T 2fhp_A 43 FDGGMALDLYSGSGG--LAIEAVS--R-GMDKSICIEKNFAALKVIKENIAIT-KEPEKFEVRKMDANRALEQFYEEKLQ 116 (187)
T ss_dssp CSSCEEEETTCTTCH--HHHHHHH--T-TCSEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCCEEEeCCccCH--HHHHHHH--c-CCCEEEEEECCHHHHHHHHHHHHHh-CCCcceEEEECcHHHHHHHHHhcCCC
Confidence 467899999999998 6666653 2 3479999999999999999999999 985 999999999977542 47
Q ss_pred ccEEEEeCC--CcccHHHHHHh---ccCCCceEEEEeC
Q 027409 114 VDFLVVDCT--SKDFARVLRFA---RFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~--K~~Y~~~f~~~---~~l~~GgvIV~DN 146 (223)
||+||.|.. .....+.+..+ +.|+|||++++..
T Consensus 117 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 117 FDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 999999975 45566777654 5579999998764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=107.56 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=87.8
Q ss_pred CCcHHHHHHH-HHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcC---CCCcEEEEEeCCchHHHHHHHHHHhhcC----
Q 027409 24 IKESGVAELL-SAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAAR---HTCARHVCIVPDERSRLAYVKAMYDVVG---- 94 (223)
Q Consensus 24 ii~p~~g~fL-~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~---~~~g~i~TIE~d~e~~~~Ar~~~~~a~G---- 94 (223)
+..|.....+ ..|. ......+|||||||+|+ .+++++.... .++++++++|+++++++.|++++++. |
T Consensus 61 ~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~--~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~ 137 (227)
T 2pbf_A 61 ISAPHMHALSLKRLINVLKPGSRAIDVGSGSGY--LTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELL 137 (227)
T ss_dssp ECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSH--HHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGG
T ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEECCCCCH--HHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-Ccccc
Confidence 4456655444 4443 35567899999999998 7777776532 14579999999999999999999998 8
Q ss_pred -ce-EEEEecchHHHh----cCCCCccEEEEeCCCcccHHHHHH-hccCCCceEEEEe
Q 027409 95 -WV-SEVIVRQAEEVM----GELKGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 95 -~~-I~li~GdA~evL----~~L~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
.. ++++.||+.+.+ ....+||+|++++...+.. +. .+.|+|||.+++.
T Consensus 138 ~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 138 KIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP---EILVDLLAENGKLIIP 192 (227)
T ss_dssp SSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC---HHHHHHEEEEEEEEEE
T ss_pred ccCCEEEEECChHhcccccCccCCCcCEEEECCchHHHH---HHHHHhcCCCcEEEEE
Confidence 44 999999998854 3235799999999876543 43 3567899998875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=113.09 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=82.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCC-CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L-~~f 114 (223)
.++++||+||||.|+ .+.+++. ..+..+|+.+|+|++.++.||+++... .++ . ++++.|||.+.|+.. +.|
T Consensus 74 ~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~f 149 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGG--VIREILK--HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQY 149 (275)
T ss_dssp SSCCEEEEESCTTCH--HHHHHTT--CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCE
T ss_pred CCCCEEEEECCchHH--HHHHHHh--CCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCe
Confidence 478999999999997 6656542 334579999999999999999999752 023 3 999999999988765 479
Q ss_pred cEEEEeCCCccc-------HHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKDF-------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y-------~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+||+|+....+ .++|+.+ +.|+|||++++..
T Consensus 150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999864322 5788766 5679999999984
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=106.80 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC--C-CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE--L-KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~--L-~~fDf 116 (223)
...+|||||||+|+ .++.||... ++++|+.+|+++++++.|+++.++. |+. |+++.||+.+.... . +.||+
T Consensus 80 ~~~~vLDiG~G~G~--~~i~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~l~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 80 GPLRVLDLGTGAGF--PGLPLKIVR--PELELVLVDATRKKVAFVERAIEVL-GLKGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp SSCEEEEETCTTTT--THHHHHHHC--TTCEEEEEESCHHHHHHHHHHHHHH-TCSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred CCCEEEEEcCCCCH--HHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHh-CCCceEEEECcHHHhhcccccCCCceE
Confidence 57899999999999 777777543 4689999999999999999999999 998 99999999887653 2 48999
Q ss_pred EEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+..+- ..+..+++.+ +.++|||.+++
T Consensus 155 I~s~a~-~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 155 AVARAV-APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp EEEESS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred EEECCc-CCHHHHHHHHHHHcCCCeEEEE
Confidence 999985 4678888866 56699998775
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=113.28 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=96.4
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc---------e-EEEEecchHH
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW---------V-SEVIVRQAEE 106 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~---------~-I~li~GdA~e 106 (223)
...++++|||||||.|+ .+.+++. . +.++|+.+|+|++.++.|++++ +. -++ . ++++.|||.+
T Consensus 72 ~~~~~~~VLdiG~G~G~--~~~~l~~--~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~ 145 (281)
T 1mjf_A 72 AHPKPKRVLVIGGGDGG--TVREVLQ--H-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE 145 (281)
T ss_dssp HSSCCCEEEEEECTTSH--HHHHHTT--S-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred hCCCCCeEEEEcCCcCH--HHHHHHh--C-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH
Confidence 34688999999999998 6767653 2 4579999999999999999999 32 022 2 9999999999
Q ss_pred HhcCCCCccEEEEeCC------Ccc-cHHHHHHh-ccCCCceEEEEeC--CCCCCccccc-ccccccccc--CCCceEEE
Q 027409 107 VMGELKGVDFLVVDCT------SKD-FARVLRFA-RFSNKGAVLAFKN--AFQRSTSGLR-WQGQGVLDR--GTRVVRSV 173 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~------K~~-Y~~~f~~~-~~l~~GgvIV~DN--vl~~g~~~~~-~~~r~~v~~--~~~~~~t~ 173 (223)
.++.-+.||+||+|+. +.. +.++|+.+ +.|+|||+++++. .+.... ... ... .++. ....+.++
T Consensus 146 ~l~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~-~~~~~~~--~l~~~f~~v~~~~~ 222 (281)
T 1mjf_A 146 FIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTD-ELISAYK--EMKKVFDRVYYYSF 222 (281)
T ss_dssp HHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHH-HHHHHHH--HHHHHCSEEEEEEE
T ss_pred HhcccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHH-HHHHHHH--HHHHHCCceEEEEE
Confidence 8765237999999986 233 57888766 5679999999974 222111 000 000 1111 12235667
Q ss_pred EeecCCc---eEEEEEc
Q 027409 174 FLPVGQG---LDIVHVG 187 (223)
Q Consensus 174 lLPiGDG---l~vs~k~ 187 (223)
.+|.++| +.++.+.
T Consensus 223 ~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 223 PVIGYASPWAFLVGVKG 239 (281)
T ss_dssp CCTTSSSSEEEEEEEES
T ss_pred ecCCCCceEEEEEeeCC
Confidence 7899887 4555554
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-12 Score=112.59 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=97.5
Q ss_pred HHHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH
Q 027409 10 ASKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM 89 (223)
Q Consensus 10 a~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~ 89 (223)
+-..|...+..+..++.|...+++..++......+|||||||.|+ .++.++... .+.++|+++|+++++++.|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~--~~~~la~~~-g~~~~v~~vD~~~~~~~~a~~~~ 150 (336)
T 2b25_A 74 ALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGG--MSLFLSKAV-GSQGRVISFEVRKDHHDLAKKNY 150 (336)
T ss_dssp CHHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhhhhcCCCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCH--HHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHH
Confidence 345677777666667888866666666677788899999999998 777777643 34589999999999999999999
Q ss_pred HhhcC----------c-e-EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 90 YDVVG----------W-V-SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 90 ~~a~G----------~-~-I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++. | . . |+++.||+.+.+..+ +.||+||+|.. .+..+++.+ +.|+|||.+++
T Consensus 151 ~~~-~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~--~~~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 151 KHW-RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp HHH-HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSS--STTTTHHHHGGGEEEEEEEEE
T ss_pred HHh-hcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCC--CHHHHHHHHHHhcCCCcEEEE
Confidence 975 5 2 3 999999998876555 36999999874 334467654 67799999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=103.59 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=81.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDf 116 (223)
....+|||+|||+|+ .+++++.... +.++++.+|+++++++.|++++++. |+. ++++.+|+.+..... +.||+
T Consensus 21 ~~~~~vLDlGcG~G~--~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 21 KEGDTVVDATCGNGN--DTAFLASLVG-ENGRVFGFDIQDKAIANTTKKLTDL-NLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp CTTCEEEESCCTTSH--HHHHHHHHHC-TTCEEEEECSCHHHHHHHHHHHHHT-TCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred CCCCEEEEcCCCCCH--HHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-CCCCCeEEEECCHHHHhhhccCCceE
Confidence 445799999999998 7777776542 3579999999999999999999998 984 999999998865444 47999
Q ss_pred EEEeCC------------CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 LVVDCT------------SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~------------K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+.|.. .+.+.++++.+ +.++|||.++.-.
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 999862 12345677654 6779999887653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=104.99 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE
Q 027409 24 IKESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV 99 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l 99 (223)
+-.|++..++..++.. .+..+|||+|||+|. .+++++.. .++++++.+|+++++++.|+++++.. |..+++
T Consensus 9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~--~~~~l~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~ 83 (215)
T 4dzr_A 9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGC--IAVSIALA--CPGVSVTAVDLSMDALAVARRNAERF-GAVVDW 83 (215)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCH--HHHHHHHH--CTTEEEEEEECC--------------------C
T ss_pred CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhH--HHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHHh-CCceEE
Confidence 3456777777777665 577899999999998 77777654 24679999999999999999999998 778999
Q ss_pred EecchHHHhcC----CCCccEEEEeCC-----------------------------CcccHHHHHHh-ccCCCceE-EEE
Q 027409 100 IVRQAEEVMGE----LKGVDFLVVDCT-----------------------------SKDFARVLRFA-RFSNKGAV-LAF 144 (223)
Q Consensus 100 i~GdA~evL~~----L~~fDfVFIDa~-----------------------------K~~Y~~~f~~~-~~l~~Ggv-IV~ 144 (223)
+.+|+.+.++. .+.||+|+.|.- .+.|..+++.+ +.|+|||. ++.
T Consensus 84 ~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 84 AAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp CHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred EEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999997764 258999999621 11135666644 66799999 666
Q ss_pred eC
Q 027409 145 KN 146 (223)
Q Consensus 145 DN 146 (223)
.-
T Consensus 164 ~~ 165 (215)
T 4dzr_A 164 EV 165 (215)
T ss_dssp EC
T ss_pred EE
Confidence 54
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=107.43 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=98.2
Q ss_pred HHHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH
Q 027409 11 SKAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY 90 (223)
Q Consensus 11 ~~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~ 90 (223)
+..|...+.....++.|....++...+......+|||+|||.|. .++.++... .++++++++|.+++.++.|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~--~~~~la~~~-~~~~~v~~vD~s~~~~~~a~~~~~ 158 (277)
T 1o54_A 82 LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGA--MCAVLARAV-GSSGKVFAYEKREEFAKLAESNLT 158 (277)
T ss_dssp HHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHT-TTTCEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCH--HHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHH
Confidence 34555555444456777776766666677778899999999998 777777543 346899999999999999999999
Q ss_pred hhcCce--EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 91 DVVGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 91 ~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+. |+. ++++.+|+.+.++. +.||+||+|.. .-..+++.+ +.|+|||.+++-.
T Consensus 159 ~~-~~~~~v~~~~~d~~~~~~~-~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 159 KW-GLIERVTIKVRDISEGFDE-KDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp HT-TCGGGEEEECCCGGGCCSC-CSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred Hc-CCCCCEEEEECCHHHcccC-CccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence 98 983 99999999887443 47999999863 334677654 5678999887644
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-12 Score=101.49 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=81.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFI 119 (223)
+..+|||||||+|+ .++.++... ++++++.+|.++++++.|+++++.. |+. ++++.+|+.+..+ -+.||+|+.
T Consensus 65 ~~~~vLDiG~G~G~--~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~-~~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGL--PGIPLSIVR--PEAHFTLLDSLGKRVRFLRQVQHEL-KLENIEPVQSRVEEFPS-EPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTT--THHHHHHHC--TTSEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEECCTTTSCC-CSCEEEEEC
T ss_pred CCCeEEEECCCCCH--HHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCeEEEecchhhCCc-cCCcCEEEE
Confidence 36899999999998 676776542 4689999999999999999999998 988 9999999987543 257999998
Q ss_pred eCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 120 DCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 120 Da~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+ -..+..+++.+ +.++|||.+++-
T Consensus 139 ~~-~~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 139 RA-FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 76 46788888866 566999998875
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=111.30 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=81.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcCc--e-EEEEecchHHHhcCC-C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVGW--V-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G~--~-I~li~GdA~evL~~L-~ 112 (223)
..++++|||||||.|. .+..++. ..+.++|+.+|+|++.++.|++++.+ . ++ . ++++.||+.+.++.. +
T Consensus 88 ~~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~ 162 (296)
T 1inl_A 88 HPNPKKVLIIGGGDGG--TLREVLK--HDSVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKN 162 (296)
T ss_dssp SSSCCEEEEEECTTCH--HHHHHTT--STTCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSS
T ss_pred CCCCCEEEEEcCCcCH--HHHHHHh--cCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhhCCC
Confidence 3578999999999997 6666642 33468999999999999999999975 3 33 3 999999999988765 4
Q ss_pred CccEEEEeCCCc--------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 113 GVDFLVVDCTSK--------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~K~--------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+|++|+.-. .+.++|+.+ +.|+|||++++..
T Consensus 163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 799999998543 347888766 5679999999973
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=110.78 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=81.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC--c--e-EEEEecchHHHhcCC-CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG--W--V-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~--~-I~li~GdA~evL~~L-~~ 113 (223)
.++++|||||||.|. .+..++. ..+..+++.+|+|++.++.|++++... + + . ++++.||+.+.++.. +.
T Consensus 77 ~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~i~~a~~~~~~~-~~~~~~~~v~~~~~D~~~~l~~~~~~ 151 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGG--IIRELCK--YKSVENIDICEIDETVIEVSKIYFKNI-SCGYEDKRVNVFIEDASKFLENVTNT 151 (283)
T ss_dssp SSCCEEEEEECTTSH--HHHHHTT--CTTCCEEEEEESCHHHHHHHHHHCTTT-SGGGGSTTEEEEESCHHHHHHHCCSC
T ss_pred CCCCeEEEEeCCcCH--HHHHHHH--cCCCCEEEEEECCHHHHHHHHHHhHHh-ccccCCCcEEEEECChHHHHHhCCCC
Confidence 478999999999997 5555542 334689999999999999999999764 3 2 3 999999999988754 47
Q ss_pred ccEEEEeCC------Cccc-HHHHHHh-ccCCCceEEEEeC
Q 027409 114 VDFLVVDCT------SKDF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~------K~~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+|++|+. ...| .++|+.+ +.|+|||++++..
T Consensus 152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999983 2334 6888866 5679999999874
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-12 Score=105.83 Aligned_cols=112 Identities=16% Similarity=0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 30 AELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
..++..+++. ....+|||||||+|+ .+++++. . ...+++.+|+++++++.|+++.++. |..++++.||+.+.
T Consensus 47 ~~~~~~l~~~~~~~~~~vLDiGcGtG~--~~~~l~~--~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 47 TPYMHALAAAASSKGGRVLEVGFGMAI--AASKVQE--A-PIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCTTSH--HHHHHHT--S-CEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHH
T ss_pred HHHHHHHHhhcCCCCCeEEEEeccCCH--HHHHHHh--c-CCCeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHh
Confidence 3445555444 456799999999998 6767642 2 2348999999999999999999988 86699999999998
Q ss_pred hcCC--CCccEEEEeCCCcc--------cHHHHHHh-ccCCCceEEEEeCC
Q 027409 108 MGEL--KGVDFLVVDCTSKD--------FARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 108 L~~L--~~fDfVFIDa~K~~--------Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
++.+ +.||+|+.|..... ...++..+ +.|+|||++++-|.
T Consensus 121 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred hcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 6655 47999999654321 22446544 67899999997664
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.4e-12 Score=98.08 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC----CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL----KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L----~~fDf 116 (223)
+.++|||+|||+|. .+++++.. +.+++.+|.++++++.|+++++.. ++.++++.+|+.+.++.+ +.||+
T Consensus 41 ~~~~vLD~GcG~G~--~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRGRFLDPFAGSGA--VGLEAASE----GWEAVLVEKDPEAVRLLKENVRRT-GLGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCCEEEEETCSSCH--HHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHH-TCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeCCCcCH--HHHHHHHC----CCeEEEEeCCHHHHHHHHHHHHHc-CCceEEEeccHHHHHHhhhccCCceEE
Confidence 77899999999998 67777643 335999999999999999999998 878999999999977644 26999
Q ss_pred EEEeCCC-cccHHHHHHh---ccCCCceEEEEeC
Q 027409 117 LVVDCTS-KDFARVLRFA---RFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K-~~Y~~~f~~~---~~l~~GgvIV~DN 146 (223)
|+.|..- ....+.++.+ +.++|||++++..
T Consensus 114 i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred EEECCCCchhHHHHHHHHHhhcccCCCcEEEEEe
Confidence 9999532 5566777654 5579999988754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-12 Score=108.60 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=80.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
.-.+|||||||+|. .++.||.....++.+|+.||+++++++.||++++.. +.. |+++.||+.+. + +++||+|+
T Consensus 70 ~~~~vLDlGcGtG~--~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-~~~~~v~~~~~D~~~~-~-~~~~d~v~ 144 (261)
T 4gek_A 70 PGTQVYDLGCSLGA--ATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDI-A-IENASMVV 144 (261)
T ss_dssp TTCEEEEETCTTTH--HHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-CCSSCEEEEESCTTTC-C-CCSEEEEE
T ss_pred CCCEEEEEeCCCCH--HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-ccCceEEEeecccccc-c-ccccccce
Confidence 44699999999998 788888766667789999999999999999999998 776 99999998763 2 35799998
Q ss_pred EeCCC-----cccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 119 VDCTS-----KDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 119 IDa~K-----~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
.-..- .+...+|..+ +.|+|||++|. |.+..
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 75432 2224566644 67899997665 44443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=102.80 Aligned_cols=114 Identities=9% Similarity=0.001 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 26 ESGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
.|....++..+... .+.++|||||||+|+ .++.++. . ..++++.+|.++++++.|+++++.. |+. ++++.+|
T Consensus 44 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~--~~~~l~~--~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d 117 (205)
T 3grz_A 44 HQTTQLAMLGIERAMVKPLTVADVGTGSGI--LAIAAHK--L-GAKSVLATDISDESMTAAEENAALN-GIYDIALQKTS 117 (205)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEETCTTSH--HHHHHHH--T-TCSEEEEEESCHHHHHHHHHHHHHT-TCCCCEEEESS
T ss_pred CccHHHHHHHHHHhccCCCEEEEECCCCCH--HHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEEecc
Confidence 34455566666654 456899999999998 6767664 2 3469999999999999999999998 988 9999999
Q ss_pred hHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.+.++ +.||+|+.+..-..+..+++.+ +.++|||.++....
T Consensus 118 ~~~~~~--~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 118 LLADVD--GKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp TTTTCC--SCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred ccccCC--CCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 977543 5899999998777777777655 56799999988544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-12 Score=106.41 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=80.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC-C--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE-L--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~-L--~~fDf 116 (223)
...+|||||||+|. +++.||.. .++..++.||+++++++.|+++.++. |+. |+++.|||.+.++. + +.||.
T Consensus 34 ~~~~vLDiGcG~G~--~~~~lA~~--~p~~~v~giD~s~~~l~~a~~~~~~~-~l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGA--SLVAMAKD--RPEQDFLGIEVHSPGVGACLASAHEE-GLSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCH--HHHHHHHH--CTTSEEEEECSCHHHHHHHHHHHHHT-TCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChH--HHHHHHHH--CCCCeEEEEEecHHHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHcCCCChhe
Confidence 67899999999998 77788754 34689999999999999999999999 998 99999999998774 3 47999
Q ss_pred EEEe---CC--Cccc------HHHHHHh-ccCCCceEEEE
Q 027409 117 LVVD---CT--SKDF------ARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 117 VFID---a~--K~~Y------~~~f~~~-~~l~~GgvIV~ 144 (223)
|++. .+ +.+. +.+++.+ +.|+|||++++
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence 9985 32 2222 3588765 67899998854
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=101.55 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce------E
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV------S 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~------I 97 (223)
.+.+..-+++..++...++++|||||||+|+ .+.+++. ..+..+++.+|+++++++.|+++++.. |+. +
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v 86 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGN--LLKILLK--DSFFEQITGVDVSYRSLEIAQERLDRL-RLPRNQWERL 86 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCH--HHHHHHH--CTTCSEEEEEESCHHHHHHHHHHHTTC-CCCHHHHTTE
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCH--HHHHHHh--hCCCCEEEEEECCHHHHHHHHHHHHHh-cCCcccCcce
Confidence 4566677778788888899999999999998 7767764 333479999999999999999999887 653 9
Q ss_pred EEEecchHHHhcC-CCCccEEEEeCCCc-----ccHHHHHHh-ccCCCceEEEEe
Q 027409 98 EVIVRQAEEVMGE-LKGVDFLVVDCTSK-----DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~GdA~evL~~-L~~fDfVFIDa~K~-----~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+++.||+.. ++. .+.||+|+....-. ++..+++.+ +.++|||++++.
T Consensus 87 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 87 QLIQGALTY-QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp EEEECCTTS-CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEeCCccc-ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 999999742 221 24799999876433 446777655 677999988764
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=112.95 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=82.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh--hcCc--e-EEEEecchHHHhcCC-C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD--VVGW--V-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~--a~G~--~-I~li~GdA~evL~~L-~ 112 (223)
..++++|||||||.|. .++.++. ..+.++++.+|+|++.++.|++++.. . ++ . ++++.||+.+.++.. +
T Consensus 114 ~~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~ 188 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGG--IIRELCK--YKSVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTN 188 (321)
T ss_dssp SSSCCEEEEEECTTCH--HHHHHTT--CTTCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCS
T ss_pred CCCCCEEEEEcCCccH--HHHHHHH--cCCCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEEccHHHHHhhcCC
Confidence 4578999999999997 6666642 33468999999999999999999986 3 34 3 999999999988654 4
Q ss_pred CccEEEEeCC------Cccc-HHHHHHh-ccCCCceEEEEeC
Q 027409 113 GVDFLVVDCT------SKDF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~------K~~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+|++|+. ...| .++++.+ +.|+|||++++..
T Consensus 189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 7999999983 2334 7888866 5679999999974
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-12 Score=104.55 Aligned_cols=113 Identities=13% Similarity=0.008 Sum_probs=90.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
+..|...+.+..++......+|||||||+|+ .++.++.. +++++.+|+++++++.|++++... | .++++.+|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~-~v~~~~~d 124 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGY--YTALIAEI----VDKVVSVEINEKMYNYASKLLSYY-N-NIKLILGD 124 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTC-S-SEEEEESC
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCH--HHHHHHHH----cCEEEEEeCCHHHHHHHHHHHhhc-C-CeEEEECC
Confidence 5577777766666677778899999999998 77777654 279999999999999999999988 7 79999999
Q ss_pred hHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 104 AEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
+.+.++.-++||+|+++..-.+..+ +..+.++|||.+++..
T Consensus 125 ~~~~~~~~~~fD~v~~~~~~~~~~~--~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 125 GTLGYEEEKPYDRVVVWATAPTLLC--KPYEQLKEGGIMILPI 165 (231)
T ss_dssp GGGCCGGGCCEEEEEESSBBSSCCH--HHHHTEEEEEEEEEEE
T ss_pred cccccccCCCccEEEECCcHHHHHH--HHHHHcCCCcEEEEEE
Confidence 9885443357999999987655543 3446779999988763
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-13 Score=115.45 Aligned_cols=95 Identities=8% Similarity=-0.083 Sum_probs=76.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCCCCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L~~fD 115 (223)
.+|++|||||||.|+ .+.+++. . + ++|+++|+|+++++.|+++|... .... ++++.|||.+.+ ++||
T Consensus 71 ~~~~~VL~iG~G~G~--~~~~ll~--~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLE--LAHQLFK--Y-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHH--HHHHHTT--S-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEE
T ss_pred CCCCEEEEEeCCcCH--HHHHHHh--C-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCC
Confidence 478999999999998 6655542 2 4 89999999999999999998641 0123 999999999876 6899
Q ss_pred EEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+|++|+.... .+|+.+ +.|+|||++++.
T Consensus 142 ~Ii~d~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 142 LIFCLQEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEEESSCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred EEEECCCChH--HHHHHHHHhcCCCcEEEEE
Confidence 9999986543 377766 567999999985
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-12 Score=111.17 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=92.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
...|...+.+...+......+|||||||.|+ .++.+|... ..+++|+.+|+++++++.|++++++. |+. |+++.+
T Consensus 58 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-g~~~v~~~~~ 133 (317)
T 1dl5_A 58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVERL-GIENVIFVCG 133 (317)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEES
T ss_pred ccCHHHHHHHHHhcCCCCcCEEEEecCCchH--HHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCeEEEEC
Confidence 4456666666666666778899999999998 777777653 33589999999999999999999999 988 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++..++||+|+++..-++..+ ...+.|+|||+++..
T Consensus 134 d~~~~~~~~~~fD~Iv~~~~~~~~~~--~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 134 DGYYGVPEFSPYDVIFVTVGVDEVPE--TWFTQLKEGGRVIVP 174 (317)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSCCCH--HHHHHEEEEEEEEEE
T ss_pred ChhhccccCCCeEEEEEcCCHHHHHH--HHHHhcCCCcEEEEE
Confidence 99886654468999999987766553 233567899999886
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-12 Score=109.11 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
.+...+-+.++....+.++|||+|||+|+ .++.+|... ..++|+.+|.+++.++.|++|++.. |+. ++++.||+
T Consensus 104 ~~~~~e~~~~~~~~~~~~~VLDlgcG~G~--~s~~la~~~--~~~~V~~vD~s~~av~~a~~n~~~n-~l~~~~~~~~d~ 178 (272)
T 3a27_A 104 QGNIEERKRMAFISNENEVVVDMFAGIGY--FTIPLAKYS--KPKLVYAIEKNPTAYHYLCENIKLN-KLNNVIPILADN 178 (272)
T ss_dssp GGGHHHHHHHHTSCCTTCEEEETTCTTTT--THHHHHHHT--CCSEEEEEECCHHHHHHHHHHHHHT-TCSSEEEEESCG
T ss_pred CCchHHHHHHHHhcCCCCEEEEecCcCCH--HHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEECCh
Confidence 44445555555556677899999999998 777877543 2579999999999999999999998 987 99999999
Q ss_pred HHHhcCCCCccEEEEeCCCcccHHHHHH-hccCCCceEEEEeC
Q 027409 105 EEVMGELKGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
.+. +..+.||+|++|.-. .+.++++. ++.++|||++++-.
T Consensus 179 ~~~-~~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 179 RDV-ELKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHE 219 (272)
T ss_dssp GGC-CCTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred HHc-CccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEE
Confidence 997 553579999999865 77788875 56778888876544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=112.42 Aligned_cols=106 Identities=10% Similarity=-0.026 Sum_probs=86.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
.....+|||||||+|+ .++.||.+ ..++++++.+|+++++++.|++++++. |+. |+++.||+.+.-.. +.||+
T Consensus 116 l~~~~~vLDiGcG~G~--~~~~la~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~-~~fD~ 190 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMS--ELLALDYS-ACPGVQLVGIDYDPEALDGATRLAAGH-ALAGQITLHRQDAWKLDTR-EGYDL 190 (305)
T ss_dssp CCTTCEEEETTCTTCH--HHHTSCCT-TCTTCEEEEEESCHHHHHHHHHHHTTS-TTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred CCCCCEEEEecCCCCH--HHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECchhcCCcc-CCeEE
Confidence 4567899999999998 66666422 345789999999999999999999998 887 99999999985333 68999
Q ss_pred EEEeC------CCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 117 LVVDC------TSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 117 VFIDa------~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
|+... ++..+..+++.+ +.|+|||.+++.+...
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 99976 555566678755 6779999999988543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=102.27 Aligned_cols=114 Identities=12% Similarity=-0.072 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
++.|....++...+......+|||+|||+|. .++.++.. +++++.+|+++++++.|++++++. |+. ++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~--~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~ 146 (248)
T 2yvl_A 74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGA--LLAVLSEV----AGEVWTFEAVEEFYKTAQKNLKKF-NLGKNVKFFN 146 (248)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEECSCHHHHHHHHHHHHHT-TCCTTEEEEC
T ss_pred cccchhHHHHHHhcCCCCCCEEEEeCCCccH--HHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHc-CCCCcEEEEE
Confidence 6778777777777777778899999999998 77777754 579999999999999999999998 884 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+.+.+..-..||+||.|.. +...+++.+ +.++|||.++.-.
T Consensus 147 ~d~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 147 VDFKDAEVPEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp SCTTTSCCCTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred cChhhcccCCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence 999885512247999999764 444677654 6678999877643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=101.69 Aligned_cols=129 Identities=15% Similarity=0.001 Sum_probs=97.5
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
..|.........++.|.....+..++......+|||+|||.|. .+++++... .++++++.+|.++++++.|+++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~ 143 (258)
T 2pwy_A 67 EEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGG--LTLFLARAV-GEKGLVESYEARPHHLAQAERNVRA 143 (258)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhhcCccccccccchHHHHHHHHcCCCCCCEEEEECCCcCH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4566666555557777666666666677788899999999998 777777543 3468999999999999999999987
Q ss_pred hcCce-EEEEecchHHH-hcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 92 VVGWV-SEVIVRQAEEV-MGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 92 a~G~~-I~li~GdA~ev-L~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
..|.. ++++.+|+.+. ++. +.||+||+|.. ....+++.+ +.++|||.+++-.
T Consensus 144 ~~g~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 144 FWQVENVRFHLGKLEEAELEE-AAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp HCCCCCEEEEESCGGGCCCCT-TCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred hcCCCCEEEEECchhhcCCCC-CCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence 42544 99999999886 332 47999999864 445677755 5678899877643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=100.69 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=80.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDf 116 (223)
....+|||||||+|+ .++.+|.. .++++++.+|++++.++.|++++++. |+. |+++.||+.+....+ +.||+
T Consensus 40 ~~~~~vLDiGcG~G~--~~~~la~~--~p~~~v~gvD~s~~~l~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGA--FVSGMAKQ--NPDINYIGIDIQKSVLSYALDKVLEV-GVPNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp SCCCEEEEESCTTSH--HHHHHHHH--CTTSEEEEEESCHHHHHHHHHHHHHH-CCSSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCCeEEEEccCcCH--HHHHHHHH--CCCCCEEEEEcCHHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHhhcCCCCCCE
Confidence 457899999999998 77777654 24689999999999999999999999 987 999999998843224 37999
Q ss_pred EEEeCCCc-----------ccHHHHHHh-ccCCCceEEEE
Q 027409 117 LVVDCTSK-----------DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~-----------~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+++.... .|..+++.+ +.|+|||++++
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 99985422 356788765 66799998876
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=102.27 Aligned_cols=116 Identities=10% Similarity=-0.025 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
+..+...+.|...+......+|||||||+|. .++.+|... +++++.+|+++++++.|++++++. |+. |+++.
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~--~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~v~~~~ 92 (256)
T 1nkv_A 19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGE--MLCTWARDH---GITGTGIDMSSLFTAQAKRRAEEL-GVSERVHFIH 92 (256)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCH--HHHHHHHHT---CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEE
Confidence 5566555555555556677899999999998 677776543 569999999999999999999998 886 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+.+... -+.||+|+.-..-. +...++..+ +.|+|||.+++-.
T Consensus 93 ~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 93 NDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp SCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 99987543 35799999744332 346777655 5679999888754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=99.89 Aligned_cols=116 Identities=9% Similarity=-0.053 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc------eE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW------VS 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~------~I 97 (223)
.+.+..-+++..++...++++|||||||+|+ .+.+++. ..+..+++.+|+++++++.|++++... ++ .+
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v 86 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGN--LLSLLLK--DKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRI 86 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCH--HHHHHHT--STTCCEEEEEESCHHHHHHHHHHHTGG-GSCHHHHTTE
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCH--HHHHHHh--cCCCCEEEEEECCHHHHHHHHHHHHhh-ccccccCcce
Confidence 4556667777777778899999999999998 6767753 233479999999999999999999877 65 39
Q ss_pred EEEecchHHHhcC-CCCccEEEEeCCCccc-----HHHHHHh-ccCCCceEEEEe
Q 027409 98 EVIVRQAEEVMGE-LKGVDFLVVDCTSKDF-----ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~GdA~evL~~-L~~fDfVFIDa~K~~Y-----~~~f~~~-~~l~~GgvIV~D 145 (223)
+++.||+.+ ++. .+.||+|+....-+.. ..+++.+ +.++|||+++..
T Consensus 87 ~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 87 SLFQSSLVY-RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EEEECCSSS-CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEeCcccc-cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 999999833 221 2479999976543333 4666654 677999988764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=98.40 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAE 105 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ 105 (223)
+..++. .+......+|||||||.|. .++.++.. +++++.+|+++++++.|+++++.. |+. ++++.+|+.
T Consensus 41 ~~~l~~-~~~~~~~~~vLdiG~G~G~--~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~ 112 (194)
T 1dus_A 41 TKILVE-NVVVDKDDDILDLGCGYGV--IGIALADE----VKSTTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHH-HCCCCTTCEEEEETCTTSH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHT-TCTTSCEEEEECSTT
T ss_pred HHHHHH-HcccCCCCeEEEeCCCCCH--HHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECchh
Confidence 333333 3344577899999999998 66666532 679999999999999999999998 876 999999998
Q ss_pred HHhcCCCCccEEEEeCC----CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 106 EVMGELKGVDFLVVDCT----SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~----K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.++ -+.||+|+.+.. ......+++.+ +.++|||.+++..
T Consensus 113 ~~~~-~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 113 ENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8544 247999999874 34456777654 5678999887754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=109.74 Aligned_cols=119 Identities=10% Similarity=0.039 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
++.....++..++......+|||+|||.|. .|+.||.. .+++|+|+.+|+++++++.|++++++. |+. |+++.+|
T Consensus 102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~--~t~~la~~-~~~~~~v~avD~s~~~l~~a~~~~~~~-g~~~v~~~~~D 177 (315)
T 1ixk_A 102 IQEASSMYPPVALDPKPGEIVADMAAAPGG--KTSYLAQL-MRNDGVIYAFDVDENRLRETRLNLSRL-GVLNVILFHSS 177 (315)
T ss_dssp ECCHHHHHHHHHHCCCTTCEEEECCSSCSH--HHHHHHHH-TTTCSEEEEECSCHHHHHHHHHHHHHH-TCCSEEEESSC
T ss_pred EeCHHHHHHHHHhCCCCCCEEEEeCCCCCH--HHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 444556666666667777899999999998 77777754 345689999999999999999999999 997 9999999
Q ss_pred hHHHhcCCCCccEEEEeCCCcc-------------------------cHHHHHH-hccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVDCTSKD-------------------------FARVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~K~~-------------------------Y~~~f~~-~~~l~~GgvIV~DNv 147 (223)
+.+....-+.||.|++|+--.. +.++++. .+.++|||.+|....
T Consensus 178 ~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 178 SLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp GGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9886442247999999964211 2466664 467799999988664
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=101.11 Aligned_cols=116 Identities=10% Similarity=-0.009 Sum_probs=85.9
Q ss_pred CCcHHHH-HHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-----e
Q 027409 24 IKESGVA-ELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-----V 96 (223)
Q Consensus 24 ii~p~~g-~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-----~ 96 (223)
+..|..- .++..+. ......+|||||||.|+ .++.++... .+.++++.+|+++++++.|++++++. |. .
T Consensus 58 ~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~--~~~~la~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~ 133 (226)
T 1i1n_A 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGI--LTACFARMV-GCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSG 133 (226)
T ss_dssp ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSH--HHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTS
T ss_pred ecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCH--HHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhh-cccccCCC
Confidence 3455543 4444443 24567899999999998 777776543 34579999999999999999999997 74 3
Q ss_pred -EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 97 -SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 97 -I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
++++.+|+.+....-.+||+|++++.-.+..+ +..+.++|||.+++-
T Consensus 134 ~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~--~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 134 RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ--ALIDQLKPGGRLILP 181 (226)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH--HHHHTEEEEEEEEEE
T ss_pred cEEEEECCcccCcccCCCcCEEEECCchHHHHH--HHHHhcCCCcEEEEE
Confidence 99999999864333357999999987655432 234677999999885
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=105.40 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 30 AELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
+.+|..++... +..+|||+|||+|. .++.+|. .. .++|+.+|+++++++.|++|++.. |+. |+++.+|+.+
T Consensus 37 ~~ll~~~~~~~~~~~~vLDlG~G~G~--~~~~la~--~~-~~~v~gvDi~~~~~~~a~~n~~~~-~~~~~v~~~~~D~~~ 110 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDLCSGNGI--IPLLLST--RT-KAKIVGVEIQERLADMAKRSVAYN-QLEDQIEIIEYDLKK 110 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEETTCTTTH--HHHHHHT--TC-CCEEEEECCSHHHHHHHHHHHHHT-TCTTTEEEECSCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEcCCchhH--HHHHHHH--hc-CCcEEEEECCHHHHHHHHHHHHHC-CCcccEEEEECcHHH
Confidence 56777777666 78899999999998 6766653 22 349999999999999999999998 887 9999999999
Q ss_pred HhcCC--CCccEEEEeCC---------C--------------cccHHHHHHh-ccCCCceEEEE
Q 027409 107 VMGEL--KGVDFLVVDCT---------S--------------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 107 vL~~L--~~fDfVFIDa~---------K--------------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
..+.+ +.||+|+.|.- + ..+..+++.+ +.|+|||.+++
T Consensus 111 ~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 111 ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp GGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 87655 47999999621 1 2245677655 66799999988
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=101.14 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=79.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDf 116 (223)
....+|||||||+|. .++.||.. .++++++.||+++++++.|+++.++. |+. |+++.||+.+....+ +.||.
T Consensus 37 ~~~~~vLDiGcG~G~--~~~~la~~--~p~~~v~giD~s~~~l~~a~~~~~~~-~~~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQ--FISGMAKQ--NPDINYIGIELFKSVIVTAVQKVKDS-EAQNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp SCCCEEEEECCTTSH--HHHHHHHH--CTTSEEEEECSCHHHHHHHHHHHHHS-CCSSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCCceEEEEecCCCH--HHHHHHHH--CCCCCEEEEEechHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHhhcCcCCcCE
Confidence 467899999999998 77777754 35789999999999999999999998 988 999999998843223 37999
Q ss_pred EEEeC---CCc--------ccHHHHHHh-ccCCCceEEEE
Q 027409 117 LVVDC---TSK--------DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa---~K~--------~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|++.. +.. .+..+++.+ +.|+|||.+++
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 99853 211 157888765 66799998874
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=103.13 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=95.4
Q ss_pred HHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 13 AYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 13 ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.|...+.....++.|.....+...+......+|||+|||.|. .+++++... .++++++++|+++++++.|+++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~ 147 (280)
T 1i9g_A 71 DYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGA--LTLSLLRAV-GPAGQVISYEQRADHAEHARRNVSGC 147 (280)
T ss_dssp HHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHhhccccceeecHHHHHHHHHHcCCCCCCEEEEEcccccH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 555555444446777666666666666777899999999998 777777543 34689999999999999999999863
Q ss_pred cC--ce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 93 VG--WV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 93 ~G--~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+| .. ++++.+|+.+....-+.||+||+|.. +...+++.+ +.++|||.+++-.
T Consensus 148 ~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 148 YGQPPDNWRLVVSDLADSELPDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp HTSCCTTEEEECSCGGGCCCCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCcEEEEECchHhcCCCCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence 14 33 99999999885222247999999874 444677755 5679999888743
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=103.32 Aligned_cols=116 Identities=9% Similarity=-0.059 Sum_probs=85.5
Q ss_pred cHHH-HHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCC----CCcEEEEEeCCchHHHHHHHHHHhhcC-----
Q 027409 26 ESGV-AELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARH----TCARHVCIVPDERSRLAYVKAMYDVVG----- 94 (223)
Q Consensus 26 ~p~~-g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~----~~g~i~TIE~d~e~~~~Ar~~~~~a~G----- 94 (223)
.|.. ..++..|. ......+|||||||.|| .+..++..... ..++++++|+++++++.|++++++. |
T Consensus 67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~--~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~ 143 (227)
T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDVGSGSGY--LTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD-DRSMLD 143 (227)
T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEESCTTSH--HHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCCccH--HHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc-CccccC
Confidence 4553 44444444 24455799999999999 67677653211 1369999999999999999999987 7
Q ss_pred ce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 95 WV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 95 ~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
.. |+++.||+.+.++...+||+|++++.-.+..+ +..+.|+|||.+++.-
T Consensus 144 ~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~--~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 144 SGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT--ELINQLASGGRLIVPV 194 (227)
T ss_dssp HTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH--HHHHTEEEEEEEEEEE
T ss_pred CCceEEEECCcccCCCcCCCccEEEECCchHHHHH--HHHHHhcCCCEEEEEE
Confidence 44 99999999885544357999999998766542 2346679999998863
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=96.98 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=84.2
Q ss_pred HHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 31 ELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 31 ~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
.+...++... ++.+|||||||+|. .+.+++.. ++++++.+|+++++++.|+++++.. |+. ++++.+|+.+
T Consensus 31 ~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~---~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 31 IIAENIINRFGITAGTCIDIGSGPGA--LSIALAKQ---SDFSIRALDFSKHMNEIALKNIADA-NLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHCCCEEEEEEETCTTSH--HHHHHHHH---SEEEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECBTTB
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCH--HHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHhc-cccCceEEEEcCHHH
Confidence 3444444333 34499999999998 67777654 4679999999999999999999998 876 9999999976
Q ss_pred HhcC-CCCccEEEEeCCCcc---cHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 107 VMGE-LKGVDFLVVDCTSKD---FARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 107 vL~~-L~~fDfVFIDa~K~~---Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
++- -+.||+|+....-.. ...+++.+ +.|+|||.++..+.+.
T Consensus 105 -~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 105 -IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp -CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred -CCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 332 147999999865433 36677654 6779999988865443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=101.93 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
+..+|..+.......+|||||||+|+ .++.++... .++++.+|+++++++.|++++++. |+. ++++.+|+.+
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~--~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGG--QTLFLADYV---KGQITGIDLFPDFIEIFNENAVKA-NCADRVKGITGSMDN 107 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSH--HHHHHHHHC---CSEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTS
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCH--HHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChhh
Confidence 44455555555667899999999998 777777543 249999999999999999999999 987 9999999954
Q ss_pred HhcCC-CCccEEEEeCCCc--ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 107 VMGEL-KGVDFLVVDCTSK--DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 107 vL~~L-~~fDfVFIDa~K~--~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
++-- +.||+|+....-. +...+++.+ +.|+|||.++....
T Consensus 108 -~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 108 -LPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp -CSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3422 4799999875433 367777755 66799999888764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=106.23 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
+.....++..++......+|||+|||.|. .|+.+|.. .+..++|+.+|+++++++.+++++++. |+. ++++.+|+
T Consensus 68 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~-~~~~~~v~avD~~~~~l~~~~~~~~~~-g~~~v~~~~~D~ 143 (274)
T 3ajd_A 68 QSISSMIPPIVLNPREDDFILDMCAAPGG--KTTHLAQL-MKNKGTIVAVEISKTRTKALKSNINRM-GVLNTIIINADM 143 (274)
T ss_dssp CCSGGGHHHHHHCCCTTCEEEETTCTTCH--HHHHHHHH-TTTCSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEESCH
T ss_pred eCHHHHHHHHHhCCCCcCEEEEeCCCccH--HHHHHHHH-cCCCCEEEEECCCHHHHHHHHHHHHHh-CCCcEEEEeCCh
Confidence 33445566666666677899999999998 77777753 333489999999999999999999999 997 99999999
Q ss_pred HHHhcC----CCCccEEEEeCCC---------------------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGE----LKGVDFLVVDCTS---------------------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~----L~~fDfVFIDa~K---------------------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.... -+.||.|++|+-- ..+.++++.+ +.++|||.+|...
T Consensus 144 ~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 144 RKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 986542 3479999999432 3456777744 6779999988865
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=103.31 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhc----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 27 SGVAELLSAMAAGW----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 27 p~~g~fL~~L~~~~----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
+.+..|+..++... ++.+|||||||+|. .+++|+.. ..++++.+|+++++++.|++++... |.. ++++.
T Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~ 134 (241)
T 2ex4_A 61 NSSRKFLQRFLREGPNKTGTSCALDCGAGIGR--ITKRLLLP---LFREVDMVDITEDFLVQAKTYLGEE-GKRVRNYFC 134 (241)
T ss_dssp HHHHHHHHGGGC----CCCCSEEEEETCTTTH--HHHHTTTT---TCSEEEEEESCHHHHHHHHHHTGGG-GGGEEEEEE
T ss_pred HhHHHHHHHHHHhcccCCCCCEEEEECCCCCH--HHHHHHHh---cCCEEEEEeCCHHHHHHHHHHhhhc-CCceEEEEE
Confidence 45677887777655 57899999999998 66665432 2469999999999999999999887 655 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcc-----cHHHHHHh-ccCCCceEEEE-eCCC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKD-----FARVLRFA-RFSNKGAVLAF-KNAF 148 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~-----Y~~~f~~~-~~l~~GgvIV~-DNvl 148 (223)
+|+.+....-+.||+|+.+..-.. +..++..+ +.|+|||.+++ |+..
T Consensus 135 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp CCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 998764322247999999965332 45677654 66788888776 5544
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=102.53 Aligned_cols=113 Identities=16% Similarity=0.079 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
....|..+.......+|||||||+|+ .++.++.. ++++++.+|+++++++.|+++++.. |+. |+++.+|+.+
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~--~~~~la~~---~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGG--QTMVLAGH---VTGQVTGLDFLSGFIDIFNRNARQS-GLQNRVTGIVGSMDD 107 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCH--HHHHHHTT---CSSEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTS
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCH--HHHHHHhc---cCCEEEEEeCCHHHHHHHHHHHHHc-CCCcCcEEEEcChhh
Confidence 34444444445568899999999998 77777642 4679999999999999999999999 987 9999999966
Q ss_pred HhcC-CCCccEEEEeCCCc--ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 107 VMGE-LKGVDFLVVDCTSK--DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 107 vL~~-L~~fDfVFIDa~K~--~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
++- -+.||+|+....-. +...+++.+ +.|+|||.++.-...
T Consensus 108 -~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 108 -LPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp -CCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred -CCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence 332 24799999865422 456777755 567999999887653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-11 Score=95.11 Aligned_cols=101 Identities=11% Similarity=-0.024 Sum_probs=80.2
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~f 114 (223)
++...++.+|||||||.|. .+++++.. +.+++.+|.++++++.|+++++.. ++. ++++.+|+.+.-. -+.|
T Consensus 27 ~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~d~~~~~~-~~~~ 98 (199)
T 2xvm_A 27 AVKVVKPGKTLDLGCGNGR--NSLYLAAN----GYDVDAWDKNAMSIANVERIKSIE-NLDNLHTRVVDLNNLTF-DRQY 98 (199)
T ss_dssp HTTTSCSCEEEEETCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHH-TCTTEEEEECCGGGCCC-CCCE
T ss_pred HhhccCCCeEEEEcCCCCH--HHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhC-CCCCcEEEEcchhhCCC-CCCc
Confidence 3455678899999999998 67677643 569999999999999999999998 886 9999999987422 3579
Q ss_pred cEEEEeCC-----CcccHHHHHHh-ccCCCceEEEE
Q 027409 115 DFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+|+.... .++...+++.+ +.++|||.++.
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99998753 33566778755 67799998543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-11 Score=98.67 Aligned_cols=110 Identities=10% Similarity=0.036 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 29 VAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 29 ~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
..+++..++... ++++|||||||+|. .++.|+.. +.+++.+|+++++++.|++++... |..++++.+|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~--~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~ 98 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACGTGI--PTLELAER----GYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVL 98 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGG
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCCCCH--HHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhc-CCceEEEECChh
Confidence 456666666553 45899999999998 67677642 579999999999999999999998 878999999998
Q ss_pred HHhcCCCCccEEEEeCCCc------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 106 EVMGELKGVDFLVVDCTSK------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+. +.-++||+|++...-. +...+++.+ +.|+|||+++.|-
T Consensus 99 ~~-~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 99 EI-AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GC-CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc-ccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 74 2125799999864322 345666644 5679999999873
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=107.45 Aligned_cols=144 Identities=17% Similarity=0.058 Sum_probs=93.4
Q ss_pred HHHHh--cCCCeEEEEccCcchHHHHHHHHHh--c---CCCCcEEEEEe-----CCch----------------------
Q 027409 35 AMAAG--WNAKLIVEAWTHGGPITTSIGLAIA--A---RHTCARHVCIV-----PDER---------------------- 80 (223)
Q Consensus 35 ~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A--~---~~~~g~i~TIE-----~d~e---------------------- 80 (223)
.|.+. .-|..|+|+|+.-|- |++.+|.. . ..++.+|+..| +.+.
T Consensus 61 ~l~~~i~~vpG~ivE~GV~rG~--S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~ 138 (257)
T 3tos_A 61 ALYRQVLDVPGVIMEFGVRFGR--HLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPA 138 (257)
T ss_dssp HHHHHTTTSCSEEEEECCTTCH--HHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHH
T ss_pred HHHHHhhCCCCeEEEEecccCH--HHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHH
Confidence 44444 679999999999997 55554421 1 13467899988 4321
Q ss_pred HHH---HHHHHHHhhcCc--e-EEEEecchHHHhcCC------CCccEEEEeCCC-cccHHHHHHhcc-CCCceEEEEeC
Q 027409 81 SRL---AYVKAMYDVVGW--V-SEVIVRQAEEVMGEL------KGVDFLVVDCTS-KDFARVLRFARF-SNKGAVLAFKN 146 (223)
Q Consensus 81 ~~~---~Ar~~~~~a~G~--~-I~li~GdA~evL~~L------~~fDfVFIDa~K-~~Y~~~f~~~~~-l~~GgvIV~DN 146 (223)
..+ .+++++++. |+ . |+++.|++.++|+.+ .+|||||||+++ +.|..+|+.+.+ +++||+||+||
T Consensus 139 ~l~~~l~~~~~~~~~-g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 139 YLKEVLDAHECSDFF-GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHHHTTSTT-TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHhhhhhc-CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcC
Confidence 111 123344456 76 3 999999999999874 259999999998 566778887755 59999999999
Q ss_pred CC---CCCccccccccccccccCCCceEEEEeecCCceEEEEE
Q 027409 147 AF---QRSTSGLRWQGQGVLDRGTRVVRSVFLPVGQGLDIVHV 186 (223)
Q Consensus 147 vl---~~g~~~~~~~~r~~v~~~~~~~~t~lLPiGDGl~vs~k 186 (223)
.- |.|+. .++.. .+.+ .++.-..+|.+.+....+.
T Consensus 218 ~~~~~w~G~~-~A~~e--f~~~--~~~~i~~~p~~~~~~y~~~ 255 (257)
T 3tos_A 218 LDNPKWPGEN-IAMRK--VLGL--DHAPLRLLPGRPAPAYLRW 255 (257)
T ss_dssp TTCTTCTHHH-HHHHH--HTCT--TSSCCEECTTCSCCEEEET
T ss_pred CCCCCChHHH-HHHHH--HHhh--CCCeEEEccCCCCCEEEEe
Confidence 74 33431 12222 2221 2245556777777665543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=110.26 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=85.5
Q ss_pred HHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CC
Q 027409 36 MAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 36 L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~ 113 (223)
+....+ .++||++|||+|. .++.+|.. +++|+++|+++++++.|++|++.. |+..++..+|+.+.++.+ +.
T Consensus 208 l~~~~~~g~~VLDlg~GtG~--~sl~~a~~----ga~V~avDis~~al~~a~~n~~~n-g~~~~~~~~D~~~~l~~~~~~ 280 (393)
T 4dmg_A 208 FEAMVRPGERVLDVYSYVGG--FALRAARK----GAYALAVDKDLEALGVLDQAALRL-GLRVDIRHGEALPTLRGLEGP 280 (393)
T ss_dssp HHTTCCTTCEEEEESCTTTH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCHHHHHHTCCCC
T ss_pred HHHHhcCCCeEEEcccchhH--HHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHh-CCCCcEEEccHHHHHHHhcCC
Confidence 334445 7899999999997 77777642 456999999999999999999999 888667799999999876 35
Q ss_pred ccEEEEeCCC------------cccHHHHHHh-ccCCCceEEE-EeCCC
Q 027409 114 VDFLVVDCTS------------KDFARVLRFA-RFSNKGAVLA-FKNAF 148 (223)
Q Consensus 114 fDfVFIDa~K------------~~Y~~~f~~~-~~l~~GgvIV-~DNvl 148 (223)
||+|++|.-. ..|.++++.+ +.++|||+++ +.+-.
T Consensus 281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999999754 4667777644 6779999998 66544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=110.72 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHHhc-----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE
Q 027409 25 KESGVAELLSAMAAGW-----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~-----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l 99 (223)
+.+.+..++..+.... ...+|||+|||+|+ .+++++.. +.+|+.+|+|++.++.|++|++.. |+.+++
T Consensus 212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~--~~~~la~~----g~~V~gvDis~~al~~A~~n~~~~-~~~v~~ 284 (381)
T 3dmg_A 212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGA--LTLPLARM----GAEVVGVEDDLASVLSLQKGLEAN-ALKAQA 284 (381)
T ss_dssp CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTST--THHHHHHT----TCEEEEEESBHHHHHHHHHHHHHT-TCCCEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHc-CCCeEE
Confidence 5677788888887754 56799999999998 77777643 569999999999999999999998 888999
Q ss_pred EecchHHHhcCCCCccEEEEeCC--------CcccHHHHHHh-ccCCCceEEEE
Q 027409 100 IVRQAEEVMGELKGVDFLVVDCT--------SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa~--------K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+|+.+.+..-+.||+|+.+.- .+.+..+++.+ +.|+|||.++.
T Consensus 285 ~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 285 LHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp EECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 99999987665458999999832 34456777654 66788888776
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-11 Score=98.69 Aligned_cols=111 Identities=8% Similarity=0.066 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 27 SGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 27 p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
....+++..++... ++.+|||||||+|. .+..++.. +.+++.+|+++++++.|++++... +..++++.+|+
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~d~ 93 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGN--LTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTST--THHHHGGG----SSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCH--HHHHHHHC----CCcEEEEECCHHHHHHHHHHHhhc-CCCeEEEeccc
Confidence 44556666666655 77899999999998 66666532 568999999999999999999988 77799999999
Q ss_pred HHHhcCCCCccEEEEeCC-------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 105 EEVMGELKGVDFLVVDCT-------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~-------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+.... +.||+|+...+ .++...++..+ +.|+|||.++++
T Consensus 94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 874322 68999999761 13455666655 567999999985
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=100.77 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|++..++..++... +..+|||||||+|. .++.++... ++++++.+|+++++++.|++|.++. |+. ++++
T Consensus 90 ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~--~~~~la~~~--~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~v~~~ 164 (276)
T 2b3t_A 90 IPRPDTECLVEQALARLPEQPCRILDLGTGTGA--IALALASER--PDCEIIAVDRMPDAVSLAQRNAQHL-AIKNIHIL 164 (276)
T ss_dssp CCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSH--HHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ccCchHHHHHHHHHHhcccCCCEEEEecCCccH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEE
Confidence 44678888888887764 57799999999998 666776432 4689999999999999999999999 987 9999
Q ss_pred ecchHHHhcCCCCccEEEEeCC-----------------C-----------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT-----------------S-----------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~-----------------K-----------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+.+.++. +.||+|+.+.- + ..|..+++.+ +.++|||.+++..
T Consensus 165 ~~d~~~~~~~-~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 165 QSDWFSALAG-QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp CCSTTGGGTT-CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred Ecchhhhccc-CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999886642 47999999720 0 3466777655 5679999998864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=103.44 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
...++..+.......+|||+|||+|+ .++.+|.. +++|+.+|+++++++.|+++++.. |+. ++++.||+.+
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~--~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~ 138 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGG--NTIQFALT----GMRVIAIDIDPVKIALARNNAEVY-GIADKIEFICGDFLL 138 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEESCHHH
T ss_pred HHHHHHHhhhccCCCEEEECccccCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHc-CCCcCeEEEECChHH
Confidence 34444555555688999999999998 77777643 589999999999999999999999 983 9999999999
Q ss_pred HhcCCCCccEEEEeCCCcccHH---HH-HHhccCCCceEEEEeC
Q 027409 107 VMGELKGVDFLVVDCTSKDFAR---VL-RFARFSNKGAVLAFKN 146 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K~~Y~~---~f-~~~~~l~~GgvIV~DN 146 (223)
..+. ..||+|+.|..-..... .+ +..+.++|||+++.+.
T Consensus 139 ~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 139 LASF-LKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp HGGG-CCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred hccc-CCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 7643 47999999964332211 22 2335679999988775
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=104.84 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=83.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCC----CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL----KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L----~~ 113 (223)
+.++||++|||+|. .++.+|.. +.+|+.+|.++++++.|++|++.. |+. ++++.+|+.+.++.+ ..
T Consensus 153 ~~~~VLDlgcGtG~--~sl~la~~----ga~V~~VD~s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~~~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGV--ASLVAAAA----GAEVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCH--HHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred CCCcEEEcccccCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHHHHHhcCCC
Confidence 46799999999998 77777642 459999999999999999999998 875 999999999988653 47
Q ss_pred ccEEEEeCCC-------------cccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 114 VDFLVVDCTS-------------KDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 114 fDfVFIDa~K-------------~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
||+|++|.-. ..|.++++.+ +.|+|||++++.+.....
T Consensus 226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~ 277 (332)
T 2igt_A 226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR 277 (332)
T ss_dssp BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCC
Confidence 9999998642 2367777654 678999997776655433
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=100.33 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfV 117 (223)
++.+|||||||+|+ .+.+++.. +.+++.+|+++++++.|+++++.. |+. ++++.+|+.+..+.. +.||+|
T Consensus 68 ~~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~v 140 (285)
T 4htf_A 68 QKLRVLDAGGGEGQ--TAIKMAER----GHQVILCDLSAQMIDRAKQAAEAK-GVSDNMQFIHCAAQDVASHLETPVDLI 140 (285)
T ss_dssp SCCEEEEETCTTCH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC--CCGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred CCCEEEEeCCcchH--HHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEEcCHHHhhhhcCCCceEE
Confidence 35699999999998 77777643 679999999999999999999998 985 999999998865333 589999
Q ss_pred EEeCCCc---ccHHHHHHh-ccCCCceEEEEeC
Q 027409 118 VVDCTSK---DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+....-. +...+++.+ +.|+|||.++...
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 141 LFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp EEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECchhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence 9986543 346677655 6779999998754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=105.60 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh---hcCce--EEEEecch
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD---VVGWV--SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~---a~G~~--I~li~GdA 104 (223)
+-+|..++...+..+|||+|||+|. .++.+|.. .++++|+.+|+++++++.|++|++. . |+. ++++.+|+
T Consensus 25 ~~lL~~~~~~~~~~~VLDlG~G~G~--~~l~la~~--~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~l~~~v~~~~~D~ 99 (260)
T 2ozv_A 25 AMLLASLVADDRACRIADLGAGAGA--AGMAVAAR--LEKAEVTLYERSQEMAEFARRSLELPDNA-AFSARIEVLEADV 99 (260)
T ss_dssp HHHHHHTCCCCSCEEEEECCSSSSH--HHHHHHHH--CTTEEEEEEESSHHHHHHHHHHTTSGGGT-TTGGGEEEEECCT
T ss_pred HHHHHHHhcccCCCEEEEeCChHhH--HHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHhhhhC-CCcceEEEEeCCH
Confidence 3455555556677899999999998 67777643 3468999999999999999999998 8 887 99999999
Q ss_pred HHHhc-----CC--CCccEEEEeC---------------------CCcccHHHHHHh-ccCCCceEEEE
Q 027409 105 EEVMG-----EL--KGVDFLVVDC---------------------TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 105 ~evL~-----~L--~~fDfVFIDa---------------------~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.+.++ .+ +.||+|+.+. ....+..+++.+ +.|+|||.+++
T Consensus 100 ~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp TCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 88643 23 4799999981 123467778755 67799998876
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=99.59 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 25 KESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
+...+-+.+..++... ...+|||||||+|. .++.++... +++++.+|+++++++.|++++++. |+. |++
T Consensus 53 l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~ 126 (302)
T 3hem_A 53 LEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGS--TMRHAVAEY---DVNVIGLTLSENQYAHDKAMFDEV-DSPRRKEV 126 (302)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHS-CCSSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcH--HHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEE
Confidence 3444556666666654 45599999999998 777776542 379999999999999999999998 887 999
Q ss_pred EecchHHHhcCCCCccEEEEeCC------------CcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDCT------------SKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa~------------K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.+|+.+. -+.||+|+.... ++++..+|+.+ +.|+|||.++......
T Consensus 127 ~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 127 RIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp EECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred EECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 99999875 258999998643 35567888755 6789999999876544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=104.12 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=79.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh---hcCce-EEEEecchHHHhcCC--CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD---VVGWV-SEVIVRQAEEVMGEL--KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~---a~G~~-I~li~GdA~evL~~L--~~ 113 (223)
.++++|||||||.|. .+..++. ..+.++|+.+|+|++.++.|++++.. ..... ++++.||+.+.+... +.
T Consensus 94 ~~~~~VLdiG~G~G~--~~~~l~~--~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGG--VLREVLR--HGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSH--HHHHHHT--CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCCeEEEEcCCCCH--HHHHHHh--CCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 578999999999997 6666653 33467999999999999999999853 20122 999999999988652 47
Q ss_pred ccEEEEeCCC------ccc-HHHHHHh-ccCCCceEEEEeC
Q 027409 114 VDFLVVDCTS------KDF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K------~~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+|++|..- ..| .++|+.+ +.|+|||++++..
T Consensus 170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999842 222 5778765 5679999999863
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=104.45 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 13 AYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 13 ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
+|.........++.|...+++..++......+|||+|||.|. .++.++... .++++++.+|+++++++.|++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~--~~~~la~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~ 158 (275)
T 1yb2_A 82 YFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGN--MSSYILYAL-NGKGTLTVVERDEDNLKKAMDNLSEF 158 (275)
T ss_dssp GHHHHC------------------CCCCTTCEEEEECCTTSH--HHHHHHHHH-TTSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred HHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCCCCH--HHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 344443333445666555666666666777899999999998 777777543 34689999999999999999999863
Q ss_pred cCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 93 VGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 93 ~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.|.. ++++.+|+.+.++. +.||+|++|.. +...+++.+ +.++|||.++.-
T Consensus 159 ~g~~~v~~~~~d~~~~~~~-~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~ 210 (275)
T 1yb2_A 159 YDIGNVRTSRSDIADFISD-QMYDAVIADIP--DPWNHVQKIASMMKPGSVATFY 210 (275)
T ss_dssp SCCTTEEEECSCTTTCCCS-CCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred CCCCcEEEEECchhccCcC-CCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEE
Confidence 2555 99999999884432 47999999764 456778755 567899977663
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=100.85 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~ 98 (223)
+..|++..++..++... ...+|||+|||+|. .++++|.. ++.+++.+|++++.++.|++|.++. |+. |+
T Consensus 103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~--~~~~la~~---~~~~v~~vDis~~al~~A~~n~~~~-~l~~~v~ 176 (284)
T 1nv8_A 103 VPRPETEELVELALELIRKYGIKTVADIGTGSGA--IGVSVAKF---SDAIVFATDVSSKAVEIARKNAERH-GVSDRFF 176 (284)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSH--HHHHHHHH---SSCEEEEEESCHHHHHHHHHHHHHT-TCTTSEE
T ss_pred ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhH--HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHc-CCCCceE
Confidence 55677777777766543 55799999999998 67777654 5789999999999999999999998 986 99
Q ss_pred EEecchHHHhcCCCCc---cEEEEeCC--------Ccc--c------------HHHHH-Hh-ccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGELKGV---DFLVVDCT--------SKD--F------------ARVLR-FA-RFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~L~~f---DfVFIDa~--------K~~--Y------------~~~f~-~~-~~l~~GgvIV~D 145 (223)
++.||+.+.++ +.| |+|+.+.- ... | ..++. .+ +.++|||.+++.
T Consensus 177 ~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 177 VRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999998765 368 99999720 000 1 14565 55 667999999975
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=100.14 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
.++..+ ...+..+|||||||+|+ .+++|+.. +.+++.+|++++.++.|+++++.. |+.++++.+|+.+...
T Consensus 111 ~~~~~~-~~~~~~~vLD~GcG~G~--~~~~l~~~----g~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~- 181 (286)
T 3m70_A 111 DVVDAA-KIISPCKVLDLGCGQGR--NSLYLSLL----GYDVTSWDHNENSIAFLNETKEKE-NLNISTALYDINAANI- 181 (286)
T ss_dssp HHHHHH-HHSCSCEEEEESCTTCH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCGGGCCC-
T ss_pred HHHHHh-hccCCCcEEEECCCCCH--HHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHc-CCceEEEEeccccccc-
Confidence 444443 33488999999999998 77777643 569999999999999999999998 8889999999987433
Q ss_pred CCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEE
Q 027409 111 LKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 111 L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
-+.||+|+... .......+++.+ +.++|||+++.
T Consensus 182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 35799999976 345566788755 67799998443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=94.80 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++|..++...++.+|||||||+|. .+.+++.. +.+++.+|.++++++.|+++++.. |..++++.+|+.+.-..
T Consensus 19 ~~l~~~~~~~~~~~vLdiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~ 91 (202)
T 2kw5_A 19 DFLVSVANQIPQGKILCLAEGEGR--NACFLASL----GYEVTAVDQSSVGLAKAKQLAQEK-GVKITTVQSNLADFDIV 91 (202)
T ss_dssp SSHHHHHHHSCSSEEEECCCSCTH--HHHHHHTT----TCEEEEECSSHHHHHHHHHHHHHH-TCCEEEECCBTTTBSCC
T ss_pred HHHHHHHHhCCCCCEEEECCCCCH--hHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhc-CCceEEEEcChhhcCCC
Confidence 455555555666699999999998 66666532 569999999999999999999998 88899999999774211
Q ss_pred CCCccEEEEeCC---CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 111 LKGVDFLVVDCT---SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 111 L~~fDfVFIDa~---K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
-+.||+|+.-.. .++...++..+ +.++|||.+++...
T Consensus 92 ~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 92 ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 247999997432 22345666644 66799999988754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=100.45 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=79.6
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..++.+|||||||+|. .+..++... ++++++.+|+++++++.|++++... + .++++.+|+.+.... +.||+|+
T Consensus 42 ~~~~~~vLDiG~G~G~--~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~~~~~~d~~~~~~~-~~fD~v~ 114 (234)
T 3dtn_A 42 DTENPDILDLGAGTGL--LSAFLMEKY--PEATFTLVDMSEKMLEIAKNRFRGN-L-KVKYIEADYSKYDFE-EKYDMVV 114 (234)
T ss_dssp SCSSCEEEEETCTTSH--HHHHHHHHC--TTCEEEEEESCHHHHHHHHHHTCSC-T-TEEEEESCTTTCCCC-SCEEEEE
T ss_pred CCCCCeEEEecCCCCH--HHHHHHHhC--CCCeEEEEECCHHHHHHHHHhhccC-C-CEEEEeCchhccCCC-CCceEEE
Confidence 3467899999999998 676776543 4689999999999999999999877 6 699999999875444 6899999
Q ss_pred EeCCCcccH-----HHHHHh-ccCCCceEEEEeCC
Q 027409 119 VDCTSKDFA-----RVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 119 IDa~K~~Y~-----~~f~~~-~~l~~GgvIV~DNv 147 (223)
....-.... .++..+ +.|+|||.++.-..
T Consensus 115 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 115 SALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 986443332 366644 67789998876553
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=113.86 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=93.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+..+++..++......+||++|||.|. .|+.+|.. .+..|+|+++|+++++++.+++|+++. |+. |+++.+
T Consensus 88 ~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGg--kt~~lA~~-~~~~g~V~AvDis~~rl~~~~~n~~r~-g~~nv~v~~~ 163 (456)
T 3m4x_A 88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGG--KSTQLAAQ-MKGKGLLVTNEIFPKRAKILSENIERW-GVSNAIVTNH 163 (456)
T ss_dssp EECCTTTHHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHH-HTTCSEEEEECSSHHHHHHHHHHHHHH-TCSSEEEECC
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEECCCcCH--HHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeC
Confidence 4555667777777777788899999999997 67777754 344689999999999999999999999 998 999999
Q ss_pred chHHHhcCC-CCccEEEEeCCCc-------------------------ccHHHHHH-hccCCCceEEEEeC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCTSK-------------------------DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~K~-------------------------~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+.+....+ +.||.||+|+--. .+.++++. .+.|+|||.+|.--
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999875433 4799999998521 11255653 36779999998644
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=98.94 Aligned_cols=115 Identities=12% Similarity=0.006 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 27 SGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
|.+...+..|.+. .+.++|||+|||+|. .+++++. . +.+++.+|+++..++.|++|++.. |+.++++.||+.
T Consensus 105 ~tt~~~~~~l~~~~~~~~~VLDiGcG~G~--l~~~la~--~--g~~v~gvDi~~~~v~~a~~n~~~~-~~~v~~~~~d~~ 177 (254)
T 2nxc_A 105 ETTRLALKALARHLRPGDKVLDLGTGSGV--LAIAAEK--L--GGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLE 177 (254)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCTTSH--HHHHHHH--T--TCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcH--HHHHHHH--h--CCeEEEEECCHHHHHHHHHHHHHc-CCcEEEEECChh
Confidence 4445566666654 467899999999998 6766654 2 339999999999999999999998 877899999999
Q ss_pred HHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 106 EVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.++. ++||+|+.+.-......+++.+ +.++|||.++.-....
T Consensus 178 ~~~~~-~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 178 AALPF-GPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp HHGGG-CCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred hcCcC-CCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeecc
Confidence 87642 4799999988766777788755 5679999998865443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=113.74 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.++....+++..++......+||++|||.|. .|+.+|.. +++.|+|+.+|+++++++.+++|+++. |+.|+++.+|
T Consensus 84 ~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~--kt~~LA~~-~~~~g~V~AvDis~~~l~~a~~n~~r~-G~~v~~~~~D 159 (464)
T 3m6w_A 84 YIQEPSAQAVGVLLDPKPGERVLDLAAAPGG--KTTHLAAR-MGGKGLLLANEVDGKRVRGLLENVERW-GAPLAVTQAP 159 (464)
T ss_dssp EECCTTTHHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHH-TTTCSEEEEECSCHHHHHHHHHHHHHH-CCCCEEECSC
T ss_pred EEECHHHHHHHHhcCcCCCCEEEEEcCCcCH--HHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHc-CCeEEEEECC
Confidence 3455566777777777788899999999998 77777754 445689999999999999999999999 9889999999
Q ss_pred hHHHhcCC-CCccEEEEeCCCc-------------------------ccHHHHHH-hccCCCceEEEEeC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTSK-------------------------DFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K~-------------------------~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
+.+....+ +.||.|++|+--. .+.++++. .+.|+|||.+|.--
T Consensus 160 a~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 160 PRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp HHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99865433 4799999997531 12556654 36779999998643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=100.64 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHhcCCC-eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 33 LSAMAAGWNAK-LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 33 L~~L~~~~~ak-~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
|..++...++. +||+||||+|| .++++|. ..+.++++.+|+|+..++.|++|.++. |+. |+++.||+++.++
T Consensus 6 L~~l~~~v~~g~~VlDIGtGsG~--l~i~la~--~~~~~~V~avDi~~~al~~A~~N~~~~-gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 6 LELVASFVSQGAILLDVGSDHAY--LPIELVE--RGQIKSAIAGEVVEGPYQSAVKNVEAH-GLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTH--HHHHHHH--TTSEEEEEEEESSHHHHHHHHHHHHHT-TCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCCCCCEEEEeCCCcHH--HHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEEEECchhhhcc
Confidence 56677777554 89999999999 7777765 334679999999999999999999999 997 9999999998876
Q ss_pred CCCCccEEEEeCC-CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 110 ELKGVDFLVVDCT-SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 110 ~L~~fDfVFIDa~-K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.-++||.|+|=.. +..-.++++.. ..++++|.+|.--.
T Consensus 81 ~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 81 ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred cCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4236999998443 33346777755 45677777666434
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-11 Score=97.47 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=80.0
Q ss_pred HHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 31 ELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
.++..+.... ..++|||||||+|. .++.++. . .+++.+|+++++++.|++++... +..++++.+|+.+.-.
T Consensus 22 ~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~---~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 22 EWVAWVLEQVEPGKRIADIGCGTGT--ATLLLAD---H--YEVTGVDLSEEMLEIAQEKAMET-NRHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHHHHSCTTCEEEEESCTTCH--HHHHHTT---T--SEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCGGGCCC
T ss_pred HHHHHHHHHcCCCCeEEEecCCCCH--HHHHHhh---C--CeEEEEECCHHHHHHHHHhhhhc-CCceEEEEcChhhcCC
Confidence 3444455444 34799999999997 6656542 1 79999999999999999999988 7669999999987422
Q ss_pred CCCCccEEEEeCCC-------cccHHHHHHh-ccCCCceEEEEe
Q 027409 110 ELKGVDFLVVDCTS-------KDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L~~fDfVFIDa~K-------~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
. +.||+|++..+- ++...+++.+ +.++|||.++++
T Consensus 94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 589999997632 3445666644 567999999985
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=100.72 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=77.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc--CC-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG--EL-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~--~L-~~fDfV 117 (223)
+..+|||||||+|+ .+++||... + .++|+.+|+++++++.|+++.+.. -.++++.||+.+... .+ ..||+|
T Consensus 74 ~~~~VLDlGcG~G~--~~~~la~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (230)
T 1fbn_A 74 RDSKILYLGASAGT--TPSHVADIA-D-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp TTCEEEEESCCSSH--HHHHHHHHT-T-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEE
T ss_pred CCCEEEEEcccCCH--HHHHHHHHc-C-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEE
Confidence 56789999999998 777777543 2 589999999999999999986543 228999999976211 11 579999
Q ss_pred EEe-CCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 118 VVD-CTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 118 FID-a~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|.| ..++++..+++.+ +.|+|||.++.-
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 998 4566778888765 578999988884
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.3e-11 Score=103.21 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=80.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
...++||++|||+|+ .++++|.... . +|+.+|.++++++.|++|++.. |+. ++++.||+.+.+. -..||+|
T Consensus 124 ~~~~~VLDlgcG~G~--~~~~la~~~~--~-~V~~vD~s~~~~~~a~~n~~~n-~~~~~v~~~~~D~~~~~~-~~~fD~V 196 (278)
T 2frn_A 124 KPDELVVDMFAGIGH--LSLPIAVYGK--A-KVIAIEKDPYTFKFLVENIHLN-KVEDRMSAYNMDNRDFPG-ENIADRI 196 (278)
T ss_dssp CTTCEEEETTCTTTT--THHHHHHHTC--C-EEEEECCCHHHHHHHHHHHHHT-TCTTTEEEECSCTTTCCC-CSCEEEE
T ss_pred CCCCEEEEecccCCH--HHHHHHHhCC--C-EEEEEECCHHHHHHHHHHHHHc-CCCceEEEEECCHHHhcc-cCCccEE
Confidence 347899999999998 7878875421 2 7999999999999999999998 887 9999999998776 3479999
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
++|.- ....++++ ..+.++|||++++-.
T Consensus 197 i~~~p-~~~~~~l~~~~~~LkpgG~l~~~~ 225 (278)
T 2frn_A 197 LMGYV-VRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp EECCC-SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EECCc-hhHHHHHHHHHHHCCCCeEEEEEE
Confidence 99975 34466776 456779999888743
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=106.09 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=86.4
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e--EEEEecchHHHhcC
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V--SEVIVRQAEEVMGE 110 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~--I~li~GdA~evL~~ 110 (223)
.++....+.++|||+|||+|. .++.+|.. . .++|+.+|++++.++.|++|++.. |+ . ++++.||+.+.++.
T Consensus 213 ~~l~~~~~~~~VLDl~cG~G~--~sl~la~~--g-~~~V~~vD~s~~al~~a~~n~~~n-gl~~~~v~~~~~D~~~~~~~ 286 (396)
T 3c0k_A 213 LATRRYVENKRVLNCFSYTGG--FAVSALMG--G-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRT 286 (396)
T ss_dssp HHHHHHCTTCEEEEESCTTCS--HHHHHHHT--T-CSEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEESCHHHHHHH
T ss_pred HHHHHhhCCCeEEEeeccCCH--HHHHHHHC--C-CCEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHH
Confidence 344455788999999999998 77777643 1 358999999999999999999998 98 4 99999999998875
Q ss_pred C----CCccEEEEeCCC------------cccHHHHH-HhccCCCceEEEEeC
Q 027409 111 L----KGVDFLVVDCTS------------KDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 111 L----~~fDfVFIDa~K------------~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+ ..||+|++|.-. ..|.+++. .++.++|||++++-+
T Consensus 287 ~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 287 YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp HHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 379999999643 56777776 456778999887644
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.2e-11 Score=101.36 Aligned_cols=106 Identities=13% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCcc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fD 115 (223)
+....++++|||||||+|. .++.++.. .+.+++++.+|++++..+.|++++... +..++++.+|+.+. +.-+.||
T Consensus 17 ~~~~~~~~~vLDiGcG~G~--~~~~l~~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~-~~~~~fD 91 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGY--LGLVLMPL-LPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI-ELNDKYD 91 (284)
T ss_dssp TSCCCSCCEEEEETCTTTH--HHHHHTTT-SCTTCEEEEEESCHHHHHHHHHHHHSS-SSEEEEEESCTTTC-CCSSCEE
T ss_pred HhccCCCCeEEEecCCCCH--HHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEcchhhc-CcCCCee
Confidence 3355688999999999998 77677543 233579999999999999999999988 87899999999873 3225799
Q ss_pred EEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+...--. +...++..+ +.|+|||.+++-.
T Consensus 92 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 92 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 999987533 335677644 6779999888543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-11 Score=107.69 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=85.0
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-- 111 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-- 111 (223)
.++.. +.++|||+|||+|. .++++|.. .++|+.+|++++.++.|++|++.. |+. ++++.||+.+.++.+
T Consensus 204 ~~~~~-~~~~VLDlg~G~G~--~~~~la~~----~~~v~~vD~s~~~~~~a~~n~~~n-~~~~~~~~~~d~~~~~~~~~~ 275 (382)
T 1wxx_A 204 YMERF-RGERALDVFSYAGG--FALHLALG----FREVVAVDSSAEALRRAEENARLN-GLGNVRVLEANAFDLLRRLEK 275 (382)
T ss_dssp HGGGC-CEEEEEEETCTTTH--HHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHT-TCTTEEEEESCHHHHHHHHHH
T ss_pred HHHhc-CCCeEEEeeeccCH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHc-CCCCceEEECCHHHHHHHHHh
Confidence 34444 67899999999998 77777654 468999999999999999999998 988 999999999988754
Q ss_pred --CCccEEEEeCCC------------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 112 --KGVDFLVVDCTS------------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 --~~fDfVFIDa~K------------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
..||+|++|.-. ..|.+++..+ +.++|||++++-.
T Consensus 276 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 276 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 379999999754 5577777644 6779999877643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=98.88 Aligned_cols=115 Identities=7% Similarity=0.026 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 25 KESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
+.+.+.+.+..++... ...+|||||||.|. .++.++... +.+++.+|+++++++.|++++++. |+. +++
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~ 144 (318)
T 2fk8_A 71 LEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGT--TMRRAVERF---DVNVIGLTLSKNQHARCEQVLASI-DTNRSRQV 144 (318)
T ss_dssp HHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSH--HHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTS-CCSSCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCcCEEEEEcccchH--HHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEE
Confidence 3444556666666654 45699999999997 676776543 569999999999999999999998 886 999
Q ss_pred EecchHHHhcCCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+.+|+.+. + +.||+|+... ..+++..+++.+ +.|+|||.++.....
T Consensus 145 ~~~d~~~~-~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 145 LLQGWEDF-A--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EESCGGGC-C--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EECChHHC-C--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99998663 4 6899999873 335667888755 678999999886654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=104.13 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=92.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.+.+..++.+..++...+..+|||+|||+|. .++.+|.... ++++|+.+|+|+++++.|++|++.+ |+. |+++.+
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~--~~ie~a~~~~-~~~~v~g~Di~~~~i~~a~~n~~~~-g~~~i~~~~~ 261 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGT--IALEAASTLG-PTSPVYAGDLDEKRLGLAREAALAS-GLSWIRFLRA 261 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSH--HHHHHHHHHC-TTSCEEEEESCHHHHHHHHHHHHHT-TCTTCEEEEC
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCH--HHHHHHHhhC-CCceEEEEECCHHHHHHHHHHHHHc-CCCceEEEeC
Confidence 5666677777777777778899999999997 6666665431 4689999999999999999999999 997 999999
Q ss_pred chHHHhcCCCCccEEEEeCC-------C----cccHHHHHHh-ccCCCceEEEE
Q 027409 103 QAEEVMGELKGVDFLVVDCT-------S----KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~-------K----~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+.+.....+.||+|+.|.- + ..|..+++.+ +.++|||.++.
T Consensus 262 D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 262 DARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp CGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred ChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99997665567999999742 1 2356777654 56788887665
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=105.35 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=89.9
Q ss_pred CCcHHHHHHH-HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELL-SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL-~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
+..+.+.+.| ..+....+..+|||+|||+|. .+++||.. +.+|+.+|.++++++.|++|.+.. |+.++++.|
T Consensus 272 q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~--~sl~la~~----~~~V~gvD~s~~ai~~A~~n~~~n-gl~v~~~~~ 344 (425)
T 2jjq_A 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGT--FGIYLAKR----GFNVKGFDSNEFAIEMARRNVEIN-NVDAEFEVA 344 (425)
T ss_dssp CSBHHHHHHHHHHHHHHCCSSEEEEETCTTTH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred ccCHHHHHHHHHHhhccCCCCEEEEeeccchH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEC
Confidence 4455555544 444446677899999999998 77777643 468999999999999999999998 877999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccH-HHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFA-RVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~-~~f~~~~~l~~GgvIV~D 145 (223)
|+.+.++. .||+|++|.-...+. .+++.+..++|||++++.
T Consensus 345 d~~~~~~~--~fD~Vv~dPPr~g~~~~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 345 SDREVSVK--GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp CTTTCCCT--TCSEEEECCCTTCSCHHHHHHHHHHCCSEEEEEE
T ss_pred ChHHcCcc--CCCEEEEcCCccchHHHHHHHHHhcCCCcEEEEE
Confidence 99997765 799999998755554 477777777888888764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-10 Score=95.98 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=89.3
Q ss_pred CcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 25 KESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
+.+.+-+.+..++... ...+|||||||.|. .++.++... +.+++.+|++++.++.|++.+++. |+. +++
T Consensus 45 l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~~---~~~v~gvd~s~~~~~~a~~~~~~~-~~~~~~~~ 118 (287)
T 1kpg_A 45 LQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGA--TMMRAVEKY---DVNVVGLTLSKNQANHVQQLVANS-ENLRSKRV 118 (287)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSH--HHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTC-CCCSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCcCEEEEECCcccH--HHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc-CCCCCeEE
Confidence 4455556666666654 45699999999997 676776432 459999999999999999999998 875 999
Q ss_pred EecchHHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 100 IVRQAEEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 100 i~GdA~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+.+|+.+ ++ +.||+|+.-.. ..++..+|+.+ +.|+|||.++.....
T Consensus 119 ~~~d~~~-~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 119 LLAGWEQ-FD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp EESCGGG-CC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EECChhh-CC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999965 44 68999998742 25667888755 678999999886643
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=94.77 Aligned_cols=113 Identities=16% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
..++.. +......+|||||||.|. .+.+++... .++++++.+|.++++++.|+++++.. |+. ++++.+|+.+.-
T Consensus 27 ~~~~~~-~~~~~~~~vLDiG~G~G~--~~~~l~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~d~~~~~ 101 (219)
T 3dh0_A 27 EKVLKE-FGLKEGMTVLDVGTGAGF--YLPYLSKMV-GEKGKVYAIDVQEEMVNYAWEKVNKL-GLKNVEVLKSEENKIP 101 (219)
T ss_dssp HHHHHH-HTCCTTCEEEESSCTTCT--THHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHH-TCTTEEEEECBTTBCS
T ss_pred HHHHHH-hCCCCCCEEEEEecCCCH--HHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEecccccCC
Confidence 334443 355677899999999998 676776543 34679999999999999999999999 987 999999997632
Q ss_pred cCCCCccEEEEeCCCcc---cHHHHHHh-ccCCCceEEEEeCC
Q 027409 109 GELKGVDFLVVDCTSKD---FARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K~~---Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
..-+.||+|+....-.. ...+++.+ +.++|||.++.-..
T Consensus 102 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 102 LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 11247999999865443 36677644 67799998887553
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=97.67 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
.+++..++...+..+|||||||+|. .+..|+.. +.+++.+|+++++++.|++++... + .++++.+|+.+..
T Consensus 40 ~~~l~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~-~~~~~~~d~~~~~- 110 (216)
T 3ofk_A 40 TQLLRLSLSSGAVSNGLEIGCAAGA--FTEKLAPH----CKRLTVIDVMPRAIGRACQRTKRW-S-HISWAATDILQFS- 110 (216)
T ss_dssp HHHHHHHTTTSSEEEEEEECCTTSH--HHHHHGGG----EEEEEEEESCHHHHHHHHHHTTTC-S-SEEEEECCTTTCC-
T ss_pred HHHHHHHcccCCCCcEEEEcCCCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHhcccC-C-CeEEEEcchhhCC-
Confidence 3455555555667899999999998 66676532 468999999999999999998876 5 5999999998754
Q ss_pred CCCCccEEEEeCC------CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 110 ELKGVDFLVVDCT------SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 110 ~L~~fDfVFIDa~------K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.-+.||+|+.... .+....++..+ +.|+|||+++...
T Consensus 111 ~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 111 TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2258999999742 23345667644 6779999999843
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=113.30 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~e 106 (223)
...-.++....+.++||++|||+|. .++++|.. ...+|+++|.++++++.|++|++.. |+. ++++.||+.+
T Consensus 528 r~~r~~l~~~~~g~~VLDlg~GtG~--~sl~aa~~---ga~~V~aVD~s~~al~~a~~N~~~n-gl~~~~v~~i~~D~~~ 601 (703)
T 3v97_A 528 RIARRMLGQMSKGKDFLNLFSYTGS--ATVHAGLG---GARSTTTVDMSRTYLEWAERNLRLN-GLTGRAHRLIQADCLA 601 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEESCTTCH--HHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHT-TCCSTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCcEEEeeechhH--HHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHH
Confidence 3334455566688999999999998 77776642 2257999999999999999999998 876 9999999999
Q ss_pred HhcCC-CCccEEEEeCCC--------------cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 107 VMGEL-KGVDFLVVDCTS--------------KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 107 vL~~L-~~fDfVFIDa~K--------------~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.++.. +.||+|++|.-. ..|.+++..+ +.++|||++++.+-.
T Consensus 602 ~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 602 WLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 98865 489999999742 3567777644 677999999887754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=105.47 Aligned_cols=106 Identities=21% Similarity=0.177 Sum_probs=84.2
Q ss_pred HHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC
Q 027409 35 AMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL 111 (223)
Q Consensus 35 ~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L 111 (223)
++.... +.++|||+|||+|. .++.+|.. ..++|+.+|++++.++.|++|++.. |+. ++++.+|+.+.++.+
T Consensus 210 ~~~~~~~~~~~VLDl~~G~G~--~~~~la~~---g~~~v~~vD~s~~~l~~a~~n~~~n-~~~~~v~~~~~d~~~~~~~~ 283 (396)
T 2as0_A 210 ALEKWVQPGDRVLDVFTYTGG--FAIHAAIA---GADEVIGIDKSPRAIETAKENAKLN-GVEDRMKFIVGSAFEEMEKL 283 (396)
T ss_dssp HHGGGCCTTCEEEETTCTTTH--HHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHhhCCCeEEEecCCCCH--HHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEECCHHHHHHHH
Confidence 344445 77899999999997 77777643 2358999999999999999999998 985 999999999987653
Q ss_pred ----CCccEEEEeCCC------------cccHHHHHH-hccCCCceEEE-EeC
Q 027409 112 ----KGVDFLVVDCTS------------KDFARVLRF-ARFSNKGAVLA-FKN 146 (223)
Q Consensus 112 ----~~fDfVFIDa~K------------~~Y~~~f~~-~~~l~~GgvIV-~DN 146 (223)
..||+|++|.-. ..|.+++.. ++.++|||+++ +.+
T Consensus 284 ~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 284 QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 479999999754 557777764 46779999554 444
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=109.05 Aligned_cols=119 Identities=7% Similarity=0.017 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEe
Q 027409 25 KESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIV 101 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~ 101 (223)
++.....++..++... ...+||++|||.|+ .|+.||.. .+++|+|+++|+++++++.+++|+++. |+. |+++.
T Consensus 99 ~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~--kt~~lA~~-~~~~g~V~avDis~~~l~~~~~n~~r~-g~~nv~~~~ 174 (479)
T 2frx_A 99 IQEASSMLPVAALFADGNAPQRVMDVAAAPGS--KTTQISAR-MNNEGAILANEFSASRVKVLHANISRC-GISNVALTH 174 (479)
T ss_dssp ECCHHHHHHHHHHTTTTCCCSEEEESSCTTSH--HHHHHHHH-TTTCSEEEEECSSHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred EECHHHHHHHHHhCcccCCCCEEEEeCCCCCH--HHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHc-CCCcEEEEe
Confidence 3444555655566555 67799999999998 77788754 445689999999999999999999999 998 99999
Q ss_pred cchHHHhcCC-CCccEEEEeCCCcc-------------------------cHHHHHH-hccCCCceEEEEeCC
Q 027409 102 RQAEEVMGEL-KGVDFLVVDCTSKD-------------------------FARVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 102 GdA~evL~~L-~~fDfVFIDa~K~~-------------------------Y~~~f~~-~~~l~~GgvIV~DNv 147 (223)
+|+.+....+ +.||.|++|+--.. +.++++. .+.++|||.+|...-
T Consensus 175 ~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 175 FDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 9998754423 47999999964211 2345553 367799999998763
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=96.34 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
+.....+..++......+|||||||+|+ .+..++.. .++++.+|+++++++.|++++++. |+. ++++.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~ 79 (239)
T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGH--TALAFSPY----VQECIGVDATKEMVEVASSFAQEK-GVENVRFQQGTAE 79 (239)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHH-TCCSEEEEECBTT
T ss_pred CCCcchHHHHhCcCCCCEEEEEccCcCH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHc-CCCCeEEEecccc
Confidence 4455556666777888999999999998 66666532 469999999999999999999998 988 999999986
Q ss_pred HHhcCC-CCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEe
Q 027409 106 EVMGEL-KGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 106 evL~~L-~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+ ++-- +.||+|+....-. +...++..+ +.++|||.+++-
T Consensus 80 ~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 80 S-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp B-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 5 4422 4799999985433 345666644 677999988773
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=98.30 Aligned_cols=103 Identities=14% Similarity=-0.007 Sum_probs=81.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfV 117 (223)
.....+|||||||+|+ .+..++.. .++++++.+|+++++++.|++++... |+. ++++.+|+.+.-..-+.||+|
T Consensus 35 ~~~~~~vLDiG~G~G~--~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v 109 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGA--QTVILAKN--NPDAEITSIDISPESLEKARENTEKN-GIKNVKFLQANIFSLPFEDSSFDHI 109 (276)
T ss_dssp CCTTCEEEETTCTTSH--HHHHHHHH--CTTSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCGGGCCSCTTCEEEE
T ss_pred CCCCCeEEEecCCCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEcccccCCCCCCCeeEE
Confidence 3567899999999998 66677654 34689999999999999999999998 987 999999998743223589999
Q ss_pred EEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 118 VVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+....- .+...++..+ +.|+|||++++-.
T Consensus 110 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 110 FVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 997533 2335677655 6679999888743
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=98.38 Aligned_cols=101 Identities=6% Similarity=-0.096 Sum_probs=77.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh------hcCce-EEEEecchHHHhcC-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD------VVGWV-SEVIVRQAEEVMGE- 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~------a~G~~-I~li~GdA~evL~~- 110 (223)
..+..+|||||||+|. .+++||.. .++..++.||+++++++.|+++++. . ++. |+++.|||.+.|+.
T Consensus 44 ~~~~~~vLDiGcG~G~--~~~~la~~--~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~-~~~nv~~~~~d~~~~l~~~ 118 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGG--LLVELSPL--FPDTLILGLEIRVKVSDYVQDRIRALRAAPAG-GFQNIACLRSNAMKHLPNF 118 (235)
T ss_dssp --CCEEEEEETCTTCH--HHHHHGGG--STTSEEEEEESCHHHHHHHHHHHHHHHHSTTC-CCTTEEEEECCTTTCHHHH
T ss_pred cCCCCeEEEEccCCcH--HHHHHHHH--CCCCeEEEEECCHHHHHHHHHHHHHHHHHHhc-CCCeEEEEECcHHHhhhhh
Confidence 3567789999999998 77777643 3568999999999999999998874 4 566 99999999886653
Q ss_pred C--CCccEEEEeCCCc-----------ccHHHHHHh-ccCCCceEEEE
Q 027409 111 L--KGVDFLVVDCTSK-----------DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 111 L--~~fDfVFIDa~K~-----------~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+ +.||.||+...-. .+..+++.+ +.|+|||.+++
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 3 4799999864211 235788755 67899998874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-10 Score=106.06 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCCeEEEEccC------cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHH--HhcC-
Q 027409 41 NAKLIVEAWTH------GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEE--VMGE- 110 (223)
Q Consensus 41 ~ak~ILEIGT~------~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~e--vL~~- 110 (223)
++.+||||||| +|. +++.++.... ++++|+.||+++++. . ... |+++.||+.+ .+..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG--~Sl~la~~~f-P~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGG--GSLRMWKSFF-PRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCC--HHHHHHHHHC-TTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCH--HHHHHHHHhC-CCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhh
Confidence 78999999999 665 5666665433 478999999999972 2 223 9999999965 3321
Q ss_pred ---CCCccEEEEeCCC--cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 111 ---LKGVDFLVVDCTS--KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 111 ---L~~fDfVFIDa~K--~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
-++||+||.|+.. .++..+|+.+ +.|+|||+++++++.
T Consensus 283 ~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 283 ARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 1589999999864 3456777655 667999999999986
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-11 Score=98.35 Aligned_cols=129 Identities=18% Similarity=0.110 Sum_probs=88.6
Q ss_pred CccccChhHHHHHHHHhhcccCCCCcHH-HHHHHHHHH----HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE
Q 027409 1 MKLVWSPDAASKAYIDTVKSCENIKESG-VAELLSAMA----AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI 75 (223)
Q Consensus 1 ~~~~w~~~~a~~ayl~~l~~~~~ii~p~-~g~fL~~L~----~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI 75 (223)
|...|+ ..+..|-..... .++ ...++..++ ......+|||||||+|. .++.++.. +++++.+
T Consensus 1 m~~~~~--~~a~~y~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~--~~~~l~~~----~~~v~~v 67 (263)
T 2yqz_A 1 MSSALL--RAAYAYDRLRAH-----PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGR--IALPLIAR----GYRYIAL 67 (263)
T ss_dssp -CHHHH--HHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTST--THHHHHTT----TCEEEEE
T ss_pred CCCchH--HHHHHHhhhccc-----ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCH--HHHHHHHC----CCEEEEE
Confidence 344454 345667665321 223 344444443 23567899999999998 66666532 6799999
Q ss_pred eCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC-CCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEe
Q 027409 76 VPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE-LKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 76 E~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~-L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|+++++++.|++++ .. +.. ++++.+|+.+ ++- -+.||+|+....-. +...++..+ +.++|||.+++-
T Consensus 68 D~s~~~~~~a~~~~-~~-~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 68 DADAAMLEVFRQKI-AG-VDRKVQVVQADARA-IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ESCHHHHHHHHHHT-TT-SCTTEEEEESCTTS-CCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHh-hc-cCCceEEEEccccc-CCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 99999999999998 43 344 9999999965 332 24799999976533 336677654 677999998875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=104.51 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=79.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCC----C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGEL----K 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L----~ 112 (223)
.+.++||++|||+|. .++++|.. ...+|+.+|.++++++.|++|++.. |+. ++++.||+.+.++.+ .
T Consensus 211 ~~~~~VLDl~cGtG~--~sl~la~~---ga~~V~~vD~s~~al~~A~~N~~~n-~~~~~~v~~~~~D~~~~l~~~~~~~~ 284 (385)
T 2b78_A 211 AAGKTVLNLFSYTAA--FSVAAAMG---GAMATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHL 284 (385)
T ss_dssp TBTCEEEEETCTTTH--HHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCeEEEEeeccCH--HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHHHHHhCC
Confidence 577899999999997 77777642 1248999999999999999999998 873 999999999988754 3
Q ss_pred CccEEEEeCCC-----c-------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 113 GVDFLVVDCTS-----K-------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~K-----~-------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+|++|.-. . .|.+++..+ +.++|||++++..
T Consensus 285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 79999999543 1 244455433 6779999988765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=92.48 Aligned_cols=114 Identities=8% Similarity=0.027 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
+...+++..+.......+|||||||.|. .++.++.. .+.+++.+|.++++++.|++++++. +..++++.+|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~ 82 (209)
T 2p8j_A 9 PQLYRFLKYCNESNLDKTVLDCGAGGDL--PPLSIFVE---DGYKTYGIEISDLQLKKAENFSREN-NFKLNISKGDIRK 82 (209)
T ss_dssp THHHHHHHHHHHSSSCSEEEEESCCSSS--CTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHH-TCCCCEEECCTTS
T ss_pred hhHHHHHHHHhccCCCCEEEEECCCCCH--HHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEECchhh
Confidence 3466788888888888999999999997 43333311 3579999999999999999999988 7669999999976
Q ss_pred HhcC-CCCccEEEEeCCC-----cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 107 VMGE-LKGVDFLVVDCTS-----KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 107 vL~~-L~~fDfVFIDa~K-----~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
++- -+.||+|+....- ++...+++.+ +.++|||.+++...
T Consensus 83 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 83 -LPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp -CCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 332 2479999976432 3445666644 66799999888654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-10 Score=105.65 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
++....+++..++......+|||+|||.|. .|+.+|.. .+..|+|+.+|+++++++.+++++++. |+. |+++.+|
T Consensus 243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~-~~~~~~v~a~D~s~~~l~~~~~~~~~~-g~~~v~~~~~D 318 (450)
T 2yxl_A 243 VQEEASAVASIVLDPKPGETVVDLAAAPGG--KTTHLAEL-MKNKGKIYAFDVDKMRMKRLKDFVKRM-GIKIVKPLVKD 318 (450)
T ss_dssp ECCHHHHHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHH-TTTCSEEEEECSCHHHHHHHHHHHHHT-TCCSEEEECSC
T ss_pred ecCchhHHHHHhcCCCCcCEEEEeCCCccH--HHHHHHHH-cCCCCEEEEEcCCHHHHHHHHHHHHHc-CCCcEEEEEcC
Confidence 455566777777777777899999999997 77777754 343489999999999999999999999 997 9999999
Q ss_pred hHHHhcCC--CCccEEEEeCCCccc-------------------------HHHHHHh-ccCCCceEEEEeC
Q 027409 104 AEEVMGEL--KGVDFLVVDCTSKDF-------------------------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L--~~fDfVFIDa~K~~Y-------------------------~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.+..+.+ +.||.|++|+--... ..+++.+ +.++|||.+|.-.
T Consensus 319 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 319 ARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp TTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 98865445 369999999643211 4566644 6679999888654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=93.46 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc----e-EE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW----V-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~----~-I~ 98 (223)
.-.....++|..++...++++|||||||+|. .++.|+.. +.+++.+|+++++++.|+++..+. +. . ++
T Consensus 40 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~ 112 (293)
T 3thr_A 40 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGV--DSIMLVEE----GFSVTSVDASDKMLKYALKERWNR-RKEPAFDKWV 112 (293)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEETTCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TTSHHHHTCE
T ss_pred chHHHHHHHHHHHhcccCCCEEEEecCCCCH--HHHHHHHC----CCeEEEEECCHHHHHHHHHhhhhc-ccccccceee
Confidence 4455677888888888899999999999998 67777643 459999999999999999998654 32 2 89
Q ss_pred EEecchHHHhcC---CCCccEEEEeC-C----------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 99 VIVRQAEEVMGE---LKGVDFLVVDC-T----------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 99 li~GdA~evL~~---L~~fDfVFIDa-~----------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+..+|+.+.-.. -+.||+|++-+ . .++...++..+ +.|+|||.++..
T Consensus 113 ~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 113 IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999999885422 25899999852 1 23356677654 678999999875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=92.10 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
...++..+.......+|||||||+|. .+.+++.. +.+++.+|+++++++.|++ . |.. ++++.+|+.+.
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~~D~s~~~~~~a~~----~-~~~~~~~~~~d~~~~ 102 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGY--WTRHLSGL----ADRVTALDGSAEMIAEAGR----H-GLDNVEFRQQDLFDW 102 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSH--HHHHHHHH----SSEEEEEESCHHHHHHHGG----G-CCTTEEEEECCTTSC
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCH--HHHHHHhc----CCeEEEEeCCHHHHHHHHh----c-CCCCeEEEecccccC
Confidence 44566666666677899999999998 67677654 5799999999999999998 5 655 99999999876
Q ss_pred hcCCCCccEEEEeCCCccc-----HHHHHHh-ccCCCceEEEEeCC
Q 027409 108 MGELKGVDFLVVDCTSKDF-----ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y-----~~~f~~~-~~l~~GgvIV~DNv 147 (223)
..-+.||+|+....-... ..+++.+ +.++|||.++.-..
T Consensus 103 -~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 103 -TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp -CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 222589999998654433 5566644 56799998876643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.8e-10 Score=102.86 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc--------------Cce-EEEEecc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV--------------GWV-SEVIVRQ 103 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~--------------G~~-I~li~Gd 103 (223)
.....+|||+|||+|+ .+|.+|... +..+|+.+|+|++.++.|++|++... |++ |+++.||
T Consensus 45 ~~~~~~VLDl~aGtG~--~~l~~a~~~--~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~D 120 (378)
T 2dul_A 45 ILNPKIVLDALSATGI--RGIRFALET--PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD 120 (378)
T ss_dssp HHCCSEEEESSCTTSH--HHHHHHHHS--SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred HcCCCEEEECCCchhH--HHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCc
Confidence 3478899999999998 888877543 24689999999999999999998751 566 9999999
Q ss_pred hHHHhcCC-CCccEEEEeCCCcccHHHHHH-hccCCCceEEEEeC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|.+.+..+ ..||+||+|. .....++++. ++.+++||+|.+..
T Consensus 121 a~~~~~~~~~~fD~I~lDP-~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 121 ANRLMAERHRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHHHSTTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhccCCCCEEEeCC-CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 99988765 4799999997 4555788885 46779999987753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=96.09 Aligned_cols=101 Identities=19% Similarity=0.122 Sum_probs=78.6
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~ 113 (223)
.+......+|||||||+|. .+..++.. .++++.+|+++++++.|++++++. |+. ++++.||+.+ ++-- +.
T Consensus 32 ~l~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~-~~~~v~~~~~d~~~-l~~~~~~ 103 (260)
T 1vl5_A 32 IAALKGNEEVLDVATGGGH--VANAFAPF----VKKVVAFDLTEDILKVARAFIEGN-GHQQVEYVQGDAEQ-MPFTDER 103 (260)
T ss_dssp HHTCCSCCEEEEETCTTCH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCC-C-CCSCTTC
T ss_pred HhCCCCCCEEEEEeCCCCH--HHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEecHHh-CCCCCCC
Confidence 3355678999999999998 66666532 359999999999999999999998 988 9999999976 3422 47
Q ss_pred ccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEE
Q 027409 114 VDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
||+|+....-. +...+|..+ +.|+|||.+++
T Consensus 104 fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEE
Confidence 99999886443 335677644 67799998877
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=93.63 Aligned_cols=101 Identities=20% Similarity=0.121 Sum_probs=78.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc------eEEEEecchHHHhcCCC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW------VSEVIVRQAEEVMGELK 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~------~I~li~GdA~evL~~L~ 112 (223)
.....+|||||||+|. .+++++.. +.+++.+|+++++++.|+++++.. ++ .++++.+|+.+.-..-+
T Consensus 28 ~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGK--ISLELASK----GYSVTGIDINSEAIRLAETAARSP-GLNQKTGGKAEFKVENASSLSFHDS 100 (235)
T ss_dssp CCTTCEEEEETCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHTTCC-SCCSSSSCEEEEEECCTTSCCSCTT
T ss_pred CCCCCeEEEECCCCCH--HHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhc-CCccccCcceEEEEecccccCCCCC
Confidence 3467899999999998 67677643 679999999999999999999987 77 38999999976321224
Q ss_pred CccEEEEeCCC------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 113 GVDFLVVDCTS------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~K------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+|+....- .....+++.+ +.|+|||.++.-.
T Consensus 101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp CEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 79999997633 3333677755 6679999888754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-10 Score=95.71 Aligned_cols=104 Identities=12% Similarity=-0.033 Sum_probs=80.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~f 114 (223)
......+|||||||.|. .+..++... +++++.+|+++++++.|+++++.. |+. ++++.+|+.+ ++-- +.|
T Consensus 79 ~~~~~~~vLDiGcG~G~--~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~f 151 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGG--AARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQA-GLADNITVKYGSFLE-IPCEDNSY 151 (297)
T ss_dssp CCCTTCEEEEETCTTSH--HHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHH-TCTTTEEEEECCTTS-CSSCTTCE
T ss_pred CCCCCCEEEEeCCCCCH--HHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEEcCccc-CCCCCCCE
Confidence 33467899999999998 676776543 469999999999999999999998 886 9999999977 3321 479
Q ss_pred cEEEEeCCCcc---cHHHHHHh-ccCCCceEEEEeCCC
Q 027409 115 DFLVVDCTSKD---FARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 115 DfVFIDa~K~~---Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+|+.-..-.+ ...+|..+ +.|+|||.++.-...
T Consensus 152 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 152 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99998754333 46777654 677999988876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=95.43 Aligned_cols=99 Identities=7% Similarity=-0.131 Sum_probs=77.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.++.+|||||||+|+ .+++|+ ..+++++.+|++++.++.|++++... +.. ++++.+|+.+..+ -..||+|
T Consensus 65 ~~~~~vLDiGcG~G~--~~~~l~----~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~-~~~fD~v 136 (235)
T 3lcc_A 65 LPLGRALVPGCGGGH--DVVAMA----SPERFVVGLDISESALAKANETYGSS-PKAEYFSFVKEDVFTWRP-TELFDLI 136 (235)
T ss_dssp SCCEEEEEETCTTCH--HHHHHC----BTTEEEEEECSCHHHHHHHHHHHTTS-GGGGGEEEECCCTTTCCC-SSCEEEE
T ss_pred CCCCCEEEeCCCCCH--HHHHHH----hCCCeEEEEECCHHHHHHHHHHhhcc-CCCcceEEEECchhcCCC-CCCeeEE
Confidence 356799999999998 666663 24789999999999999999999986 654 9999999988432 2479999
Q ss_pred EEeCC-----CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 118 VVDCT-----SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.-.. .++...+++.+ +.|+|||.+++-.
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 171 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLM 171 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 96542 34667788755 6679999988743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-09 Score=86.85 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCcHHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
...+...+.+..++.. ...++|||+|||+|. .++.++.. ..++++.+|+++++++.|+++++.. |+.++++
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~--~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~ 102 (207)
T 1wy7_A 29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGV--LSYGALLL---GAKEVICVEVDKEAVDVLIENLGEF-KGKFKVF 102 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCH--HHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGG-TTSEEEE
T ss_pred cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCH--HHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHc-CCCEEEE
Confidence 4566676666665553 357899999999998 77777643 2358999999999999999999998 8789999
Q ss_pred ecchHHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.||+.+ ++ ..||+|++|.- +.....+++.+ +.+ |++.+..
T Consensus 103 ~~d~~~-~~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 103 IGDVSE-FN--SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp ESCGGG-CC--CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ECchHH-cC--CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 999988 34 37999999963 34556777644 455 6766655
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-10 Score=96.23 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=82.5
Q ss_pred HHHHHHHhcCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 32 LLSAMAAGWNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 32 fL~~L~~~~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
=|..++...++ .+||+|||+.|| .++++|. ..+.++|+.+|+|+..++.|++|+++. |++ |+++.||+++.+
T Consensus 11 RL~~i~~~v~~g~~VlDIGtGsG~--l~i~la~--~~~~~~V~AvDi~~~al~~A~~N~~~~-gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVPKGARLLDVGSDHAY--LPIFLLQ--MGYCDFAIAGEVVNGPYQSALKNVSEH-GLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSCTTEEEEEETCSTTH--HHHHHHH--TTCEEEEEEEESSHHHHHHHHHHHHHT-TCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCCCCCEEEEECCchHH--HHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhhcc
Confidence 35666666654 589999999999 7777764 334578999999999999999999999 987 999999999987
Q ss_pred cCCCCccEEEEeCC-CcccHHHHHHh-ccCCCceE-EEEeC
Q 027409 109 GELKGVDFLVVDCT-SKDFARVLRFA-RFSNKGAV-LAFKN 146 (223)
Q Consensus 109 ~~L~~fDfVFIDa~-K~~Y~~~f~~~-~~l~~Ggv-IV~DN 146 (223)
..-++||.|+|-.- .+.-.++++.. ..++++|. |+.-|
T Consensus 86 ~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 86 EEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp CGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence 64337999998543 23345666654 34556554 44444
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=95.40 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=78.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-------cCce-EEEEecchHHHhcC-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-------VGWV-SEVIVRQAEEVMGE- 110 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-------~G~~-I~li~GdA~evL~~- 110 (223)
.+..+|||||||+|. .++.+|... +++.++.||+++++++.|+++++.. .|+. ++++.+|+.+.|+.
T Consensus 48 ~~~~~vLDiGcG~G~--~~~~la~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 48 TKKVTIADIGCGFGG--LMIDLSPAF--PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF 123 (246)
T ss_dssp SCCEEEEEETCTTSH--HHHHHHHHS--TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT
T ss_pred CCCCEEEEEcCCCCH--HHHHHHHhC--CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh
Confidence 356789999999998 777777543 4679999999999999999998753 0555 99999999987775
Q ss_pred C--CCccEEEEeCCCcc-----------cHHHHHHh-ccCCCceEEEE
Q 027409 111 L--KGVDFLVVDCTSKD-----------FARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 111 L--~~fDfVFIDa~K~~-----------Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+ ..+|.||+.-.... |..++..+ +.|+|||++++
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 3 37999987642222 36788755 67899999876
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=90.66 Aligned_cols=109 Identities=13% Similarity=-0.018 Sum_probs=79.6
Q ss_pred HHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 30 AELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
..++..+.... ...+|||||||+|. .+++++.. +.+++.+|+++++++.|+++++.. +..++++.+|+.+.
T Consensus 26 ~~~~~~l~~~~~~~~~vLDlG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~- 97 (227)
T 1ve3_A 26 ETLEPLLMKYMKKRGKVLDLACGVGG--FSFLLEDY----GFEVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKL- 97 (227)
T ss_dssp HHHHHHHHHSCCSCCEEEEETCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSC-
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhc-CCCceEEECchhcC-
Confidence 34444454433 46899999999997 66676643 239999999999999999999988 75599999998772
Q ss_pred cC-CCCccEEEEeCC--C---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 109 GE-LKGVDFLVVDCT--S---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~-L~~fDfVFIDa~--K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+- -+.||+|+.... - .+...+++.+ +.++|||.++...
T Consensus 98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 31 147999998754 1 2335566644 5679999887653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-10 Score=92.89 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=76.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH--hcCC-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV--MGEL-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev--L~~L-~~fDfV 117 (223)
...+|||+|||+|+ .+++++... .++++++.+|.++++++.++++.++. -.++++.+|+.+. +..+ +.||+|
T Consensus 73 ~~~~vLDlG~G~G~--~~~~la~~~-~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 73 PGKSVLYLGIASGT--TASHVSDIV-GWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp TTCEEEEETTTSTT--HHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCEEEEEeccCCH--HHHHHHHHh-CCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEE
Confidence 46799999999998 777887553 23589999999999999999987754 1289999999873 2334 479999
Q ss_pred EEeCCCcccHHH-HHHh-ccCCCceEEEEe
Q 027409 118 VVDCTSKDFARV-LRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K~~Y~~~-f~~~-~~l~~GgvIV~D 145 (223)
|.|......... +..+ +.|+|||.++.-
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 148 FEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 999864444333 6644 678999988875
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=89.93 Aligned_cols=109 Identities=13% Similarity=-0.013 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
+...++|..++... ..+|||||||+|. .+.+|+.. +.+++.+|+++++++.|++++.+ ++++.+|+.+
T Consensus 28 ~~~~~~l~~~~~~~-~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~d~~~ 95 (203)
T 3h2b_A 28 DPDRVLIEPWATGV-DGVILDVGSGTGR--WTGHLASL----GHQIEGLEPATRLVELARQTHPS-----VTFHHGTITD 95 (203)
T ss_dssp CTTHHHHHHHHHHC-CSCEEEETCTTCH--HHHHHHHT----TCCEEEECCCHHHHHHHHHHCTT-----SEEECCCGGG
T ss_pred HHHHHHHHHHhccC-CCeEEEecCCCCH--HHHHHHhc----CCeEEEEeCCHHHHHHHHHhCCC-----CeEEeCcccc
Confidence 44556666666655 8899999999998 67677643 56899999999999999987432 6999999987
Q ss_pred HhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 107 VMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.-..-+.||+|+.... .++...+++.+ +.++|||.++....
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 96 LSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp GGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4212258999999763 34557778755 67799999987653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-10 Score=102.92 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHHHH---HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc
Q 027409 29 VAELLSAM---AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 29 ~g~fL~~L---~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
...+...+ ....+.++|||||||+|. .++.+|.+ ...+|+.+|.+ ++++.|+++++.. |+. |+++.||
T Consensus 48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~--ls~~la~~---g~~~V~gvD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d 120 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGI--LAIWSAQA---GARKVYAVEAT-KMADHARALVKAN-NLDHIVEVIEGS 120 (376)
T ss_dssp HHHHHHHHHTTTTTTTTCEEEEESCTTTH--HHHHHHHT---TCSEEEEEESS-TTHHHHHHHHHHT-TCTTTEEEEESC
T ss_pred HHHHHHHHHhccccCCCCEEEEeccCcCH--HHHHHHhc---CCCEEEEEccH-HHHHHHHHHHHHc-CCCCeEEEEECc
Confidence 33444444 344577899999999998 77777654 12499999999 9999999999998 887 9999999
Q ss_pred hHHHhcCCCCccEEEEeCC------CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVDCT------SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~------K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.+.... +.||+|+.+.- ......++..+ +.|+|||+++.+..
T Consensus 121 ~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 121 VEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp GGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 9875322 68999999751 12344566655 67799999988653
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=101.50 Aligned_cols=109 Identities=12% Similarity=0.012 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 29 VAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 29 ~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
+..++..++... +..+|||+|||+|+ .+++||.. .++|+.+|.+++.++.|++|.+.. |+. ++++.||+
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~--~~~~la~~----~~~V~gvD~s~~al~~A~~n~~~~-~~~~v~f~~~d~ 343 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGN--FTLPLATQ----AASVVGVEGVPALVEKGQQNARLN-GLQNVTFYHENL 343 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTT--THHHHHTT----SSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCT
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCH--HHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEECCH
Confidence 445555554443 55799999999998 77777642 579999999999999999999998 987 99999999
Q ss_pred HHHhcCC----CCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 105 EEVMGEL----KGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 105 ~evL~~L----~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+.++.+ +.||+|++|--.....+.++.+..++++++|.+
T Consensus 344 ~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~~~~p~~ivyv 387 (433)
T 1uwv_A 344 EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYV 387 (433)
T ss_dssp TSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEE
T ss_pred HHHhhhhhhhcCCCCEEEECCCCccHHHHHHHHHhcCCCeEEEE
Confidence 9987763 379999999877766777777666678887754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=98.97 Aligned_cols=101 Identities=10% Similarity=-0.073 Sum_probs=78.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fD 115 (223)
.....+|||||||+|. .++.++... +++++.+|+++++++.|++++++. |+. ++++.||+.+. +-- +.||
T Consensus 115 ~~~~~~vLDiGcG~G~--~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~-~~~~~~fD 187 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGG--SMVMAHRRF---GSRVEGVTLSAAQADFGNRRAREL-RIDDHVRSRVCNMLDT-PFDKGAVT 187 (312)
T ss_dssp CCTTCEEEEESCTTSH--HHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTSC-CCCTTCEE
T ss_pred CCCCCEEEEecCCCCH--HHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-CCCCceEEEECChhcC-CCCCCCEe
Confidence 3456799999999998 777777542 579999999999999999999999 987 99999999763 321 4799
Q ss_pred EEEEeCCCc--ccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTSK--DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~--~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+.-..-. ....+|+.+ +.|+|||.++.-.
T Consensus 188 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 188 ASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 998753211 267778755 6779999887544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=101.17 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~f 114 (223)
....+.++|||||||+|+ .++.+|.+ ..++|+.+|.+ ++++.|+++.+.. |+. |+++.||+.+.--.-+.|
T Consensus 62 ~~~~~~~~VLDvGcG~G~--~~~~la~~---g~~~v~gvD~s-~~l~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~f 134 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGI--LCMFAAKA---GARKVIGIECS-SISDYAVKIVKAN-KLDHVVTIIKGKVEEVELPVEKV 134 (349)
T ss_dssp HHHHTTCEEEEESCTTSH--HHHHHHHT---TCSEEEEEECS-THHHHHHHHHHHT-TCTTTEEEEESCTTTCCCSSSCE
T ss_pred cccCCCCEEEEEeccchH--HHHHHHHC---CCCEEEEECcH-HHHHHHHHHHHHc-CCCCcEEEEECcHHHccCCCCce
Confidence 356788999999999998 77777654 24699999999 5999999999998 887 999999998861112489
Q ss_pred cEEEEeC------CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 115 DFLVVDC------TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa------~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+|+.+. .......++..+ +.|+|||+++.+.
T Consensus 135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 135 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred EEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 9999864 234556677665 6789999998554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=102.13 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce----EEEE
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV----SEVI 100 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~----I~li 100 (223)
+++.+..+|..+ ......+|||+|||+|+ .++.++.. .++.+|+.+|.++++++.|++|++.. |+. ++++
T Consensus 207 ~d~~~~~ll~~l-~~~~~~~VLDlGcG~G~--~s~~la~~--~p~~~V~gvD~s~~al~~Ar~n~~~n-gl~~~~~v~~~ 280 (375)
T 4dcm_A 207 LDIGARFFMQHL-PENLEGEIVDLGCGNGV--IGLTLLDK--NPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFM 280 (375)
T ss_dssp CCHHHHHHHHTC-CCSCCSEEEEETCTTCH--HHHHHHHH--CTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGGGEEEE
T ss_pred ccHHHHHHHHhC-cccCCCeEEEEeCcchH--HHHHHHHH--CCCCEEEEEECcHHHHHHHHHHHHHc-CCCcCceEEEE
Confidence 333333344333 22334799999999998 77777754 34689999999999999999999998 864 8999
Q ss_pred ecchHHHhcCCCCccEEEEeCC--------CcccHHHHHHh-ccCCCceEEEE
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT--------SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~--------K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.+|+.+.++. +.||+||.|.- .....++|+.+ +.|+|||.+++
T Consensus 281 ~~D~~~~~~~-~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 281 INNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp ECSTTTTCCT-TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred echhhccCCC-CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999885432 47999999732 33445677755 56788888776
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.8e-10 Score=95.26 Aligned_cols=113 Identities=8% Similarity=-0.096 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh------------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD------------ 91 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~------------ 91 (223)
...|...+++..+....+..+|||+|||+|+ .+.+||.. +.+||.||.++++++.|++....
T Consensus 51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~--~~~~La~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~ 124 (252)
T 2gb4_A 51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAI--EMKWFADR----GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAG 124 (252)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCTTCT--HHHHHHHT----TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCCHHHHHHHHHhccCCCCCeEEEeCCCCcH--HHHHHHHC----CCeEEEEECCHHHHHHHHHhccccccccccccccc
Confidence 5566666777665544577899999999998 78888742 56999999999999999876531
Q ss_pred ------hcCceEEEEecchHHHhcC-CCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEE
Q 027409 92 ------VVGWVSEVIVRQAEEVMGE-LKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 92 ------a~G~~I~li~GdA~evL~~-L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
. +..|+++.||+.+.-.. .+.||+|+.=+ ..+.-..++..+ +.|+|||.++
T Consensus 125 ~~~~~~~-~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 125 AKVFKSS-SGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp CEEEEET-TSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccC-CCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 1 22399999999885443 36899998422 122335677654 6789999975
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=92.52 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 26 ESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
.+.+.+++..++... ...+|||||||.|. .++.++... +++++.+|+++++++.|+++++.. |+. ++++
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~ 116 (273)
T 3bus_A 43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGK--PAVRLATAR---DVRVTGISISRPQVNQANARATAA-GLANRVTFS 116 (273)
T ss_dssp HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSH--HHHHHHHHS---CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCH--HHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEE
Confidence 444556666666554 56799999999998 677776532 579999999999999999999998 886 9999
Q ss_pred ecchHHHhcCC-CCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 101 VRQAEEVMGEL-KGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ~GdA~evL~~L-~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+|+.+ ++-- +.||+|+.-..-. +...+|..+ +.++|||.++.-...
T Consensus 117 ~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 117 YADAMD-LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ECCTTS-CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ECcccc-CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 999977 3322 4799999765332 346777755 667999988876644
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.6e-10 Score=102.94 Aligned_cols=119 Identities=10% Similarity=0.068 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHH-------HHHHHhhcC--ce-
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAY-------VKAMYDVVG--WV- 96 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~A-------r~~~~~a~G--~~- 96 (223)
|.....+..++......+|||||||+|+ .++.+|... ..+++++||++++.++.| +++++.. | +.
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~--la~~LA~~~--g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~-Gl~~~n 302 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGN--CVVQAALEC--GCALSFGCEIMDDASDLTILQYEELKKRCKLY-GMRLNN 302 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSH--HHHHHHHHH--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT-TBCCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCH--HHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc-CCCCCc
Confidence 4443333344455677899999999998 777777543 235899999999999999 9999988 8 45
Q ss_pred EEEEecchHHH---hcC-CCCccEEEEeC--CCcccHHHHH-HhccCCCceEEEEeCCCCC
Q 027409 97 SEVIVRQAEEV---MGE-LKGVDFLVVDC--TSKDFARVLR-FARFSNKGAVLAFKNAFQR 150 (223)
Q Consensus 97 I~li~GdA~ev---L~~-L~~fDfVFIDa--~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~ 150 (223)
|+++.||+... ++. ..+||+||+.. .-.+....|. +.+.|+|||.||+-+.+..
T Consensus 303 V~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 303 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred eEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 99999977532 221 25799999862 2244555665 4467899999999876543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=98.12 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC-C-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE-L-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~-L-~~fDfV 117 (223)
..++||++| |+|. .+++++.. .++++++.+|+++++++.|++|+++. |+. |+++.||+.+.|+. . +.||+|
T Consensus 172 ~~~~VLDlG-G~G~--~~~~la~~--~~~~~v~~vDi~~~~l~~a~~~~~~~-g~~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 172 ENKDIFVLG-DDDL--TSIALMLS--GLPKRIAVLDIDERLTKFIEKAANEI-GYEDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp TTCEEEEES-CTTC--HHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHH-TCCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCEEEEEC-CCCH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEEChhhhhchhhccCCccEE
Confidence 478999999 9998 77777643 33579999999999999999999999 986 99999999986764 4 479999
Q ss_pred EEeCCC--cccHHHHHHh-ccCCCce-EEEEe
Q 027409 118 VVDCTS--KDFARVLRFA-RFSNKGA-VLAFK 145 (223)
Q Consensus 118 FIDa~K--~~Y~~~f~~~-~~l~~Gg-vIV~D 145 (223)
|+|.-- .....+++.+ +.++||| +++..
T Consensus 246 i~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 246 ITDPPETLEAIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred EECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence 999521 1245667644 6789999 54444
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-10 Score=102.81 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=83.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhc-CC-CCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMG-EL-KGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~-~L-~~f 114 (223)
...+||+++||+|. .+|.+|... .+ ++|+.+|+|++.++.+++|++.. |++ ++++.|||.+.+. .+ ..|
T Consensus 52 ~g~~VLDlfaGtG~--~sl~aa~~~--~ga~~V~avDi~~~av~~~~~N~~~N-gl~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGI--RAIRFLLET--SCVEKAYANDISSKAIEIMKENFKLN-NIPEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSH--HHHHHHHHC--SCEEEEEEECSCHHHHHHHHHHHHHT-TCCGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccH--HHHHHHHhC--CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCceEEEEeCCHHHHHHHhhCCCC
Confidence 34799999999998 788776532 23 68999999999999999999998 885 9999999999998 77 479
Q ss_pred cEEEEeCCCcccHHHHHH-hccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKDFARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DN 146 (223)
|+||+|. .....++++. ++.+++||+|++--
T Consensus 127 D~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP-FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999 5555678874 46679999987743
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=97.67 Aligned_cols=99 Identities=9% Similarity=-0.008 Sum_probs=77.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc----eEEEEecchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW----VSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~----~I~li~GdA~evL~~L~~fDf 116 (223)
++.+|||||||+|+ .+++|+.. +.+++.+|+++++++.|++++... ++ .|+++.+|+.+. +.-+.||+
T Consensus 82 ~~~~vLDlGcG~G~--~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~~~~-~~~~~fD~ 153 (299)
T 3g2m_A 82 VSGPVLELAAGMGR--LTFPFLDL----GWEVTALELSTSVLAAFRKRLAEA-PADVRDRCTLVQGDMSAF-ALDKRFGT 153 (299)
T ss_dssp CCSCEEEETCTTTT--THHHHHTT----TCCEEEEESCHHHHHHHHHHHHTS-CHHHHTTEEEEECBTTBC-CCSCCEEE
T ss_pred CCCcEEEEeccCCH--HHHHHHHc----CCeEEEEECCHHHHHHHHHHHhhc-ccccccceEEEeCchhcC-CcCCCcCE
Confidence 45699999999998 67677632 578999999999999999999998 74 399999999873 32358999
Q ss_pred EEEeCC------CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 117 LVVDCT------SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 117 VFIDa~------K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
|++... .++...+|+.+ +.|+|||.+++...
T Consensus 154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 997532 22346677654 67799999998754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=97.67 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
+.|.......+.++|||||||+|+ .++.+|.+ ...+++.+|.+ ++++.|++++++. |+. |+++.||+.+.-
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~--ls~~la~~---g~~~v~~vD~s-~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~ 100 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGI--LSMFAAKH---GAKHVIGVDMS-SIIEMAKELVELN-GFSDKITLLRGKLEDVH 100 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSH--HHHHHHHT---CCSEEEEEESS-THHHHHHHHHHHT-TCTTTEEEEESCTTTSC
T ss_pred HHHHhhHhhcCCCEEEEecCccHH--HHHHHHHC---CCCEEEEEChH-HHHHHHHHHHHHc-CCCCCEEEEECchhhcc
Confidence 334444556788999999999998 67676643 23599999999 6999999999998 886 999999998742
Q ss_pred cCCCCccEEEEeC------CCcccHHHHHHh-ccCCCceEEEE
Q 027409 109 GELKGVDFLVVDC------TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 109 ~~L~~fDfVFIDa------~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
...++||+|+.+. .......++..+ +.|+|||+++.
T Consensus 101 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 1124799999873 122345566654 67799999984
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=96.36 Aligned_cols=106 Identities=9% Similarity=-0.037 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
+..|+...++..++. .....+|||||||+|+ .++.++.. +++++.+|+++++++.|+++.. .++++.
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~ 97 (226)
T 3m33_A 29 LSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGP--DAARFGPQ----AARWAAYDFSPELLKLARANAP-----HADVYE 97 (226)
T ss_dssp ESSSCTTHHHHHHHHHHCCTTCEEEEESCTTSH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHCT-----TSEEEE
T ss_pred cCCCCHHHHHHHHHHhcCCCCCeEEEeCCCCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHhCC-----CceEEE
Confidence 344555555555554 3567899999999998 77677543 5799999999999999999821 279999
Q ss_pred cchHHHhcCC--CCccEEEEeCCCcccHHHHHHh-ccCCCceEEE
Q 027409 102 RQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 102 GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
+|+.+.++-- +.||+|+... +...++..+ +.|+|||.++
T Consensus 98 ~d~~~~~~~~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 98 WNGKGELPAGLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCSCSSCCTTCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred cchhhccCCcCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence 9998767632 4799999984 445556544 6679999999
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-10 Score=93.44 Aligned_cols=110 Identities=9% Similarity=-0.044 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHhc-CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGW-NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~-~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
......++..+.... ++.+|||||||+|. .+..|+. .+.+++.+|+++++++.|++++.+ ++++.||+
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~d~ 102 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGM--HLRHLAD----SFGTVEGLELSADMLAIARRRNPD-----AVLHHGDM 102 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSH--HHHHHTT----TSSEEEEEESCHHHHHHHHHHCTT-----SEEEECCT
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCH--HHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC-----CEEEECCh
Confidence 344455555555554 45899999999997 6666642 256899999999999999987652 68999999
Q ss_pred HHHhcCCCCccEEEEeCCC-------cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 105 EEVMGELKGVDFLVVDCTS-------KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~K-------~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.+. +.-+.||+|+...+- ++...++..+ +.|+|||.++++..
T Consensus 103 ~~~-~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 103 RDF-SLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp TTC-CCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHC-CccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 873 223589999998632 2344566644 67799999999853
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-10 Score=99.65 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=77.2
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCc
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~f 114 (223)
+...+.++|||||||+|. .++.+|.+ ..++++.+|.++ +++.|++++++. |+. |+++.||+.+.-..-++|
T Consensus 60 ~~~~~~~~VLDiGcGtG~--ls~~la~~---g~~~v~gvD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGI--LSMFAAKA---GAKKVLGVDQSE-ILYQAMDIIRLN-KLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp GGGTTTCEEEEETCTTSH--HHHHHHHT---TCSEEEEEESST-HHHHHHHHHHHT-TCTTTEEEEESCTTTSCCSCSCE
T ss_pred hhhcCCCEEEEeeccCcH--HHHHHHHc---CCCEEEEEChHH-HHHHHHHHHHHc-CCCCcEEEEEeeHHHhcCCCCcE
Confidence 335678899999999998 77777653 235999999996 999999999998 884 999999998741111479
Q ss_pred cEEEEeCC------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 115 DFLVVDCT------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
|+|+.+.- ......++..+ +.|+|||+++.+
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 170 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 170 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcc
Confidence 99998751 12334566654 677999999843
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=95.26 Aligned_cols=109 Identities=12% Similarity=-0.013 Sum_probs=81.9
Q ss_pred HHHHHHhcCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc
Q 027409 33 LSAMAAGWNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG 109 (223)
Q Consensus 33 L~~L~~~~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~ 109 (223)
|..++...++ .+||+|||+.|| .+++||.. .+.++++.+|+|+..++.|++|+++. |+. |+++.||+++.+.
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~--l~i~la~~--~~~~~V~avDi~~~al~~A~~N~~~~-gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 12 LEKVASYITKNERIADIGSDHAY--LPCFAVKN--QTASFAIAGEVVDGPFQSAQKQVRSS-GLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHTTCCSSEEEEEETCSTTH--HHHHHHHT--TSEEEEEEEESSHHHHHHHHHHHHHT-TCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCCCCCEEEEECCccHH--HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEEEecchhhccC
Confidence 5666666655 589999999999 77777643 34578999999999999999999999 997 9999999999876
Q ss_pred CCCCccEEEEeC-CCcccHHHHHHh-ccCCCceEE-EEeC
Q 027409 110 ELKGVDFLVVDC-TSKDFARVLRFA-RFSNKGAVL-AFKN 146 (223)
Q Consensus 110 ~L~~fDfVFIDa-~K~~Y~~~f~~~-~~l~~GgvI-V~DN 146 (223)
.-++||.|++-. .++.-.++++.. ..+++++.+ +.-|
T Consensus 87 ~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 423599999843 233456666654 445555544 4444
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=98.91 Aligned_cols=117 Identities=13% Similarity=0.174 Sum_probs=90.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.+.+...+.|..++ ..+..+|||+|||+|. .++.+|.. ...++|+.+|+|+++++.|++|++.+ |+. |+++.
T Consensus 201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~--~~i~~a~~--~~~~~v~g~Dis~~~l~~A~~n~~~~-gl~~~i~~~~ 274 (373)
T 3tm4_A 201 HLKASIANAMIELA-ELDGGSVLDPMCGSGT--ILIELALR--RYSGEIIGIEKYRKHLIGAEMNALAA-GVLDKIKFIQ 274 (373)
T ss_dssp CCCHHHHHHHHHHH-TCCSCCEEETTCTTCH--HHHHHHHT--TCCSCEEEEESCHHHHHHHHHHHHHT-TCGGGCEEEE
T ss_pred CccHHHHHHHHHhh-cCCCCEEEEccCcCcH--HHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCceEEEE
Confidence 56777888777777 7778899999999997 67666643 33569999999999999999999999 994 99999
Q ss_pred cchHHHhcCCCCccEEEEeCC-----------CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVMGELKGVDFLVVDCT-----------SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~-----------K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+.+.-...+.||+|+.|.- ...|.++++.+ +.+..++++++.|
T Consensus 275 ~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~ 331 (373)
T 3tm4_A 275 GDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTE 331 (373)
T ss_dssp CCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEESC
T ss_pred CChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 999986443468999999842 23367777755 4455555556554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-10 Score=90.36 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
...++|..+. ..+..+|||||||.|. .+..++.. +.+++.+|+++++++.|++++..- ++++.+|+.+.
T Consensus 33 ~~~~~l~~~~-~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~d~~~~ 101 (220)
T 3hnr_A 33 HYEDILEDVV-NKSFGNVLEFGVGTGN--LTNKLLLA----GRTVYGIEPSREMRMIAKEKLPKE----FSITEGDFLSF 101 (220)
T ss_dssp THHHHHHHHH-HTCCSEEEEECCTTSH--HHHHHHHT----TCEEEEECSCHHHHHHHHHHSCTT----CCEESCCSSSC
T ss_pred HHHHHHHHhh-ccCCCeEEEeCCCCCH--HHHHHHhC----CCeEEEEeCCHHHHHHHHHhCCCc----eEEEeCChhhc
Confidence 3455666554 3478899999999998 66677642 679999999999999999887622 68999999875
Q ss_pred hcCCCCccEEEEeCCCcccHH-----HHHHh-ccCCCceEEEEeCC
Q 027409 108 MGELKGVDFLVVDCTSKDFAR-----VLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y~~-----~f~~~-~~l~~GgvIV~DNv 147 (223)
-.. +.||+|+....-....+ ++..+ +.++|||.++....
T Consensus 102 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 102 EVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp CCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 333 78999999865444432 66544 67799998887653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-10 Score=101.93 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=92.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.++.+..+++..++......+|||+|||.|. .|+.+|.. .+ +|+|+.+|+++++++.+++++++. |+.++++.+|
T Consensus 229 ~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~-~~-~~~v~a~D~~~~~l~~~~~~~~~~-g~~~~~~~~D 303 (429)
T 1sqg_A 229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGG--KTTHILEV-AP-EAQVVAVDIDEQRLSRVYDNLKRL-GMKATVKQGD 303 (429)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEESCTTCH--HHHHHHHH-CT-TCEEEEEESSTTTHHHHHHHHHHT-TCCCEEEECC
T ss_pred EeeCHHHHHHHHHcCCCCcCeEEEECCCchH--HHHHHHHH-cC-CCEEEEECCCHHHHHHHHHHHHHc-CCCeEEEeCc
Confidence 3566677777777777777899999999997 77777754 33 489999999999999999999999 9889999999
Q ss_pred hHHHhcCC--CCccEEEEeCCCcc-------------------------cHHHHHHh-ccCCCceEEEEeC
Q 027409 104 AEEVMGEL--KGVDFLVVDCTSKD-------------------------FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 104 A~evL~~L--~~fDfVFIDa~K~~-------------------------Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.+..+.+ +.||.|++|+--.. +.++++.+ +.++|||.+|.-.
T Consensus 304 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 304 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 98754322 37999999973211 24566644 6679999988755
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=91.56 Aligned_cols=101 Identities=9% Similarity=-0.084 Sum_probs=78.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc-CCCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG-ELKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~-~L~~fDf 116 (223)
.+..+|||||||+|. .++.++.. ..++++.+|+++++++.|++++... |.. ++++.+|+.+.-- .-+.||+
T Consensus 63 ~~~~~vLDiGcG~G~--~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~ 136 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGG--DLLKYERA---GIGEYYGVDIAEVSINDARVRARNM-KRRFKVFFRAQDSYGRHMDLGKEFDV 136 (298)
T ss_dssp CTTCEEEEETCTTTT--THHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTS-CCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCCeEEEECCCCCH--HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHhc-CCCccEEEEECCccccccCCCCCcCE
Confidence 577899999999997 55566543 2459999999999999999999998 874 9999999987421 1247999
Q ss_pred EEEeCCC-------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 117 LVVDCTS-------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 117 VFIDa~K-------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
|+....- .+...++..+ +.|+|||.++..-
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9998643 3345666644 6779999988653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=90.61 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=71.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH---hcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV---MGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev---L~~L~~fDfV 117 (223)
...+|||||||+|+ .+..+|... + +|+|+.+|+++++++.+++.-++. ..++++.+|+.+. .+-.+.||+|
T Consensus 57 ~g~~VLDlGcGtG~--~~~~la~~~-~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 57 GDERVLYLGAASGT--TVSHLADIV-D-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp SSCEEEEETCTTSH--HHHHHHHHT-T-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCEEEEECCcCCH--HHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEE
Confidence 45699999999998 777777543 3 689999999999877666544332 1388899999764 2212589999
Q ss_pred EEeCCCc-ccHHHHHH-hccCCCceEEEEe
Q 027409 118 VVDCTSK-DFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K~-~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
|.|.... +...++.. .+.|+|||.+++.
T Consensus 131 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 131 YQDIAQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9996533 23334654 4678999999887
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-09 Score=86.05 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
...+...+.|..++.. ...++|||+|||+|+ .+++++.. ..++++.+|+++++++.|++++. . ++++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~--~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~-~----~~~~ 100 (200)
T 1ne2_A 31 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGI--LACGSYLL---GAESVTAFDIDPDAIETAKRNCG-G----VNFM 100 (200)
T ss_dssp CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCH--HHHHHHHT---TBSEEEEEESCHHHHHHHHHHCT-T----SEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccH--HHHHHHHc---CCCEEEEEECCHHHHHHHHHhcC-C----CEEE
Confidence 4556666666665553 367899999999998 67777643 23589999999999999999887 3 6999
Q ss_pred ecchHHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.||+.+ ++ +.||+|+.|.- +.....+++.+ +.+ |+++++.|.
T Consensus 101 ~~d~~~-~~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~ 148 (200)
T 1ne2_A 101 VADVSE-IS--GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA 148 (200)
T ss_dssp ECCGGG-CC--CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEG
T ss_pred ECcHHH-CC--CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC
Confidence 999988 44 58999999964 33445677643 555 777776653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.8e-10 Score=90.87 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
....++..+....++.+|||||||+|. .+..++. .+.+++.+|+++++++.|++.+.. .++++.+|+.+.
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~ 98 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGD--FTSRLQE----HFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA 98 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSH--HHHHHTT----TCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCH--HHHHHHH----hCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence 445566666667788999999999998 6666643 245899999999999999988654 389999999886
Q ss_pred hcCCCCccEEEEeCCCc---ccHHHHHH-h-ccCCCceEEEEeC
Q 027409 108 MGELKGVDFLVVDCTSK---DFARVLRF-A-RFSNKGAVLAFKN 146 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~---~Y~~~f~~-~-~~l~~GgvIV~DN 146 (223)
.+ -+.||+|+.-..-+ +...++.. . +.|+|||.++...
T Consensus 99 ~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 99 QL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred Cc-CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 32 24799999876433 33567764 4 5679999887754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=95.51 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=82.1
Q ss_pred CCcHHH-HHHHHHHHHhcC--CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEE
Q 027409 24 IKESGV-AELLSAMAAGWN--AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEV 99 (223)
Q Consensus 24 ii~p~~-g~fL~~L~~~~~--ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~l 99 (223)
++.+.+ ..++..++.... .++|||+|||+|. .+++||.. .++|+.+|.+++.++.|++|.+.. |+. +++
T Consensus 193 Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~--~~l~la~~----~~~V~gvd~~~~ai~~a~~n~~~n-g~~~v~~ 265 (369)
T 3bt7_A 193 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGN--FSLALARN----FDRVLATEIAKPSVAAAQYNIAAN-HIDNVQI 265 (369)
T ss_dssp CSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSH--HHHHHGGG----SSEEEEECCCHHHHHHHHHHHHHT-TCCSEEE
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCH--HHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHc-CCCceEE
Confidence 344444 344444444432 4789999999998 77777642 368999999999999999999998 987 999
Q ss_pred EecchHHHhcCC----------------CCccEEEEeCCCcc-cHHHHHHhccCCCceEEEEe
Q 027409 100 IVRQAEEVMGEL----------------KGVDFLVVDCTSKD-FARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 100 i~GdA~evL~~L----------------~~fDfVFIDa~K~~-Y~~~f~~~~~l~~GgvIV~D 145 (223)
+.|||.+.++.+ ..||+||+|.-... ..+.++.+. ++|.+|.+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~--~~g~ivyvs 326 (369)
T 3bt7_A 266 IRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYIS 326 (369)
T ss_dssp ECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHT--TSSEEEEEE
T ss_pred EECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHHh--CCCEEEEEE
Confidence 999999987542 16999999986543 344555544 455555543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=97.20 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
.+-+.++....+.++||++|||+|+ .++. |. ..++++.+|.|++.++.|++|++.. |+. ++++.||+.+.
T Consensus 184 ~er~~i~~~~~~~~~VLDlg~G~G~--~~l~-a~----~~~~V~~vD~s~~ai~~a~~n~~~n-~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 184 GERARIMKKVSLNDVVVDMFAGVGP--FSIA-CK----NAKKIYAIDINPHAIELLKKNIKLN-KLEHKIIPILSDVREV 255 (336)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTSH--HHHH-TT----TSSEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCEEEEccCccCH--HHHh-cc----CCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECChHHh
Confidence 3334333334577899999999997 6666 53 2679999999999999999999998 984 99999999997
Q ss_pred hcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 108 MGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+ ..||+||+|.- ....++++.+ +.+++||++++-
T Consensus 256 ~---~~fD~Vi~dpP-~~~~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 256 D---VKGNRVIMNLP-KFAHKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp C---CCEEEEEECCT-TTGGGGHHHHHHHEEEEEEEEEE
T ss_pred c---CCCcEEEECCc-HhHHHHHHHHHHHcCCCCEEEEE
Confidence 7 68999999953 2234677644 667889976663
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=91.90 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=74.3
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCcc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fD 115 (223)
...+.++|||||||+|+ .+.+++.. +.+++.+|+++++++.|+++ ++++.+|+.+.+..+ +.||
T Consensus 38 ~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGE--FLELCKEE----GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp GTTTCSCEEEETCTTTH--HHHHHHHH----TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBS
T ss_pred hhcCCCeEEEEeCCCCH--HHHHHHhC----CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCee
Confidence 34566999999999998 66677643 56899999999999988876 488999999987554 4799
Q ss_pred EEEEeCCCc-----ccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTSK-----DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~-----~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+.-..-+ ++..++..+ +.|+|||.+++..
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999875432 556788755 6789999988754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-09 Score=91.71 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc-Cce-EEEEecc
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV-GWV-SEVIVRQ 103 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~-G~~-I~li~Gd 103 (223)
.++..++|..+.. .+.++|||||||+|. .++.|+... +++.+++.+|+++++++.|+++++... +.. ++++.+|
T Consensus 22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 97 (299)
T 3g5t_A 22 PSDFYKMIDEYHD-GERKLLVDVGCGPGT--ATLQMAQEL-KPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97 (299)
T ss_dssp CHHHHHHHHHHCC-SCCSEEEEETCTTTH--HHHHHHHHS-SCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCEEEEECCCCCH--HHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcC
Confidence 3444444433322 478899999999998 777776432 347899999999999999999998741 233 9999999
Q ss_pred hHHHh-cC---C--CCccEEEEeCCCc--ccHHHHHHh-ccCCCceEEEE
Q 027409 104 AEEVM-GE---L--KGVDFLVVDCTSK--DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 104 A~evL-~~---L--~~fDfVFIDa~K~--~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+.- +. + +.||+|+....-. +...+++.+ +.|+|||.++.
T Consensus 98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 98 SDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 98732 22 1 4799999875322 456677654 66799999987
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-09 Score=85.43 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=76.7
Q ss_pred HHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC---
Q 027409 34 SAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE--- 110 (223)
Q Consensus 34 ~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~--- 110 (223)
...+...++.+|||||||+|. .+.+++.. +.+++.+|+++++++.|+++ . . ++++.+|+.+....
T Consensus 45 ~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~---~-~--~~~~~~~~~~~~~~~~~ 112 (227)
T 3e8s_A 45 LLAILGRQPERVLDLGCGEGW--LLRALADR----GIEAVGVDGDRTLVDAARAA---G-A--GEVHLASYAQLAEAKVP 112 (227)
T ss_dssp HHHHHHTCCSEEEEETCTTCH--HHHHHHTT----TCEEEEEESCHHHHHHHHHT---C-S--SCEEECCHHHHHTTCSC
T ss_pred HHHhhcCCCCEEEEeCCCCCH--HHHHHHHC----CCEEEEEcCCHHHHHHHHHh---c-c--cccchhhHHhhcccccc
Confidence 333445667999999999998 66666532 67999999999999999987 2 1 57888999886332
Q ss_pred CC-CccEEEEeCC--CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 111 LK-GVDFLVVDCT--SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 111 L~-~fDfVFIDa~--K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.+ .||+|+.... ..+...+++.+ +.|+|||.+++...
T Consensus 113 ~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 113 VGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 23 5999998754 45667788755 67799999988654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-09 Score=84.57 Aligned_cols=104 Identities=13% Similarity=-0.047 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
..+|..+ ..+..+|||||||.|. .+++++.. +.+++.+|++++.++.|++++.+ ++++.+|+.+.-.
T Consensus 37 ~~~l~~~--~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~~-----~~~~~~d~~~~~~ 103 (195)
T 3cgg_A 37 ARLIDAM--APRGAKILDAGCGQGR--IGGYLSKQ----GHDVLGTDLDPILIDYAKQDFPE-----ARWVVGDLSVDQI 103 (195)
T ss_dssp HHHHHHH--SCTTCEEEEETCTTTH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHCTT-----SEEEECCTTTSCC
T ss_pred HHHHHHh--ccCCCeEEEECCCCCH--HHHHHHHC----CCcEEEEcCCHHHHHHHHHhCCC-----CcEEEcccccCCC
Confidence 4566665 4578899999999998 66677643 56999999999999999987743 5889999887311
Q ss_pred CCCCccEEEEeCCC------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 110 ELKGVDFLVVDCTS------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 110 ~L~~fDfVFIDa~K------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.-+.||+|+....- ++...+++.+ +.++|||.++...
T Consensus 104 ~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 104 SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 12479999997432 2335667654 5679999888754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=96.16 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=77.2
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~f 114 (223)
...+.++|||||||+|. .++.+|.+ ..++|+.+|.++ +++.|++++++. |+. |+++.||+.+. .+ ++|
T Consensus 47 ~~~~~~~VLDiGcGtG~--ls~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~-~l~~~v~~~~~d~~~~--~~~~~~ 117 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGI--LSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSN-NLTDRIVVIPGKVEEV--SLPEQV 117 (348)
T ss_dssp GGTTTCEEEEETCTTSH--HHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHT-TCTTTEEEEESCTTTC--CCSSCE
T ss_pred ccCCcCEEEEcCCCccH--HHHHHHhC---CCCEEEEECCHH-HHHHHHHHHHHc-CCCCcEEEEEcchhhC--CCCCce
Confidence 34578899999999998 67676643 246999999996 889999999998 885 99999999874 12 479
Q ss_pred cEEEEeCC-----CcccHHHHHHh-ccCCCceEEEE
Q 027409 115 DFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|+|+...- .+.+.+.+..+ +.|+|||+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999853 35566777654 56799999984
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.3e-10 Score=96.65 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=76.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-------------------------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG------------------------- 94 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G------------------------- 94 (223)
...++|||||||+|+ .++.||... ++.+|+.||+++++++.|+++++.. +
T Consensus 45 ~~~~~VLDiGCG~G~--~~~~la~~~--~~~~v~gvDis~~~i~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T 3g07_A 45 FRGRDVLDLGCNVGH--LTLSIACKW--GPSRMVGLDIDSRLIHSARQNIRHY-LSEELRLPPQTLEGDPGAEGEEGTTT 119 (292)
T ss_dssp TTTSEEEEESCTTCH--HHHHHHHHT--CCSEEEEEESCHHHHHHHHHTC------------------------------
T ss_pred cCCCcEEEeCCCCCH--HHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHhh-hhhhcccccccccccccccccccccc
Confidence 367899999999998 777777543 2469999999999999999998765 4
Q ss_pred ----------------------------------ceEEEEecchHHH---h-cC-CCCccEEEEeCCC---------ccc
Q 027409 95 ----------------------------------WVSEVIVRQAEEV---M-GE-LKGVDFLVVDCTS---------KDF 126 (223)
Q Consensus 95 ----------------------------------~~I~li~GdA~ev---L-~~-L~~fDfVFIDa~K---------~~Y 126 (223)
..|+++.||..+. + +. -+.||+|+.-.-- +..
T Consensus 120 ~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~ 199 (292)
T 3g07_A 120 VRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGL 199 (292)
T ss_dssp ----------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHH
T ss_pred ccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHH
Confidence 1299999998732 2 22 2489999987642 245
Q ss_pred HHHHHHh-ccCCCceEEEEeCC
Q 027409 127 ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 127 ~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.++|+.+ +.|+|||++|...-
T Consensus 200 ~~~l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 200 KRMFRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHHhCCCcEEEEecC
Confidence 5677654 67799999998654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=92.93 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc--Cc--e-------
Q 027409 31 ELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV--GW--V------- 96 (223)
Q Consensus 31 ~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~--G~--~------- 96 (223)
+++..++... ++.+|||+|||+|. .++.++.....++.+|+.+|+++++++.|++++.... |+ .
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~--~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGY--LLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSH--HHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCH--HHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 5555555543 56799999999998 6767765421235789999999999999999876530 22 1
Q ss_pred ------------------EE-------------EEecchHHHhcC----C-CCccEEEEeC-----CC-------cccHH
Q 027409 97 ------------------SE-------------VIVRQAEEVMGE----L-KGVDFLVVDC-----TS-------KDFAR 128 (223)
Q Consensus 97 ------------------I~-------------li~GdA~evL~~----L-~~fDfVFIDa-----~K-------~~Y~~ 128 (223)
|+ ++.+|+.+.++. . ..||+||.+- .. +.|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 45 999999886531 2 3799999873 11 44667
Q ss_pred HHHHh-ccCCCceEEEE
Q 027409 129 VLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 129 ~f~~~-~~l~~GgvIV~ 144 (223)
+++.+ +.|+|||+++.
T Consensus 196 ~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAV 212 (250)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 77754 67889998775
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-10 Score=91.31 Aligned_cols=110 Identities=6% Similarity=-0.078 Sum_probs=76.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------------
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------------ 92 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------------ 92 (223)
+.|...+++..+ ......+|||+|||+|+ .+.+||.. +.+|+.||+++++++.|++..+..
T Consensus 7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~--~~~~la~~----g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 79 (203)
T 1pjz_A 7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQ--DMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79 (203)
T ss_dssp STHHHHHHHHHH-CCCTTCEEEETTTCCSH--HHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred CCHHHHHHHHhc-ccCCCCEEEEeCCCCcH--hHHHHHHC----CCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence 445555555443 23467899999999998 78888753 569999999999999999876531
Q ss_pred cCceEEEEecchHHHhcC-CCCccEEEEeCCC-----cccHHHHHH-hccCCCceE
Q 027409 93 VGWVSEVIVRQAEEVMGE-LKGVDFLVVDCTS-----KDFARVLRF-ARFSNKGAV 141 (223)
Q Consensus 93 ~G~~I~li~GdA~evL~~-L~~fDfVFIDa~K-----~~Y~~~f~~-~~~l~~Ggv 141 (223)
.+..|+++.||+.+.-.. .+.||+|+.-+.- +.-..++.. .+.|+|||.
T Consensus 80 ~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred cCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 012289999998774222 1479999853321 223446664 477899996
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=90.14 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC
Q 027409 32 LLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL 111 (223)
Q Consensus 32 fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L 111 (223)
+|..++.....++|||||||+|. .+..++.. . .++++.+|+++++++.|++++... .++++.+|+.+....-
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~d~~~~~~~~ 105 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGW--FCRWAHEH--G-ASYVLGLDLSEKMLARARAAGPDT---GITYERADLDKLHLPQ 105 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCH--HHHHHHHT--T-CSEEEEEESCHHHHHHHHHTSCSS---SEEEEECCGGGCCCCT
T ss_pred HHHHhccccCCCEEEEEcCcCCH--HHHHHHHC--C-CCeEEEEcCCHHHHHHHHHhcccC---CceEEEcChhhccCCC
Confidence 44555555678899999999998 66666643 1 239999999999999999876543 2789999998732112
Q ss_pred CCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeC
Q 027409 112 KGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 ~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.||+|+....-. +...+++.+ +.++|||.+++..
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 4799999876433 346667654 6679999888753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=97.87 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.+...++..++....-.+||++|||.|+ .|+.+|... .+.|+|+++|+++++++.+++|+++. |+. |+++.+
T Consensus 85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~--kt~~la~~~-~~~g~V~a~D~~~~~l~~~~~n~~r~-g~~~v~~~~~ 160 (309)
T 2b9e_A 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGN--KTSHLAALL-KNQGKIFAFDLDAKRLASMATLLARA-GVSCCELAEE 160 (309)
T ss_dssp EECCTGGGHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEEC
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCChhH--HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 3455566666667776777899999999998 777887543 45689999999999999999999999 998 999999
Q ss_pred chHHHhcCC---CCccEEEEeCC
Q 027409 103 QAEEVMGEL---KGVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L---~~fDfVFIDa~ 122 (223)
|+.+..... ..||.||+|+-
T Consensus 161 D~~~~~~~~~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 161 DFLAVSPSDPRYHEVHYILLDPS 183 (309)
T ss_dssp CGGGSCTTCGGGTTEEEEEECCC
T ss_pred ChHhcCccccccCCCCEEEEcCC
Confidence 999865543 47999999953
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=89.98 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHH------hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE
Q 027409 26 ESGVAELLSAMAA------GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV 99 (223)
Q Consensus 26 ~p~~g~fL~~L~~------~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l 99 (223)
.|...+.+..++. .....+|||+|||+|+ .+++|+... .++++++.+|+++++++.+.++.++. ..+++
T Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~--~~~~la~~~-g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~ 130 (233)
T 2ipx_A 56 NPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGT--TVSHVSDIV-GPDGLVYAVEFSHRSGRDLINLAKKR--TNIIP 130 (233)
T ss_dssp CTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSH--HHHHHHHHH-CTTCEEEEECCCHHHHHHHHHHHHHC--TTEEE
T ss_pred cccchhHHHHHHhHHheecCCCCCEEEEEcccCCH--HHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHhhcc--CCeEE
Confidence 3444455544443 2345799999999998 777787543 23589999999998877777766553 12899
Q ss_pred EecchHHH--hcCC-CCccEEEEeCC-CcccHHHHH-HhccCCCceEEEEe
Q 027409 100 IVRQAEEV--MGEL-KGVDFLVVDCT-SKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 100 i~GdA~ev--L~~L-~~fDfVFIDa~-K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+.||+.+. ++.. +.||+|+.|.. .++...++. ..+.|+|||.+++.
T Consensus 131 ~~~d~~~~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 131 VIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp ECSCTTCGGGGGGGCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccCChhhhcccCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence 99999873 3433 47999999975 333345565 55778999999984
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=93.88 Aligned_cols=99 Identities=20% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh--cCC-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM--GEL-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL--~~L-~~fDfV 117 (223)
.-.+||++|||+|+ .+..+|... .++|+|+++|.++++++.++++.++. +- |+.+.+|+.+.. +.+ +.+|+|
T Consensus 77 pG~~VldlG~G~G~--~~~~la~~V-G~~G~V~avD~s~~~~~~l~~~a~~~-~n-i~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 77 EGDRILYLGIASGT--TASHMSDII-GPRGRIYGVEFAPRVMRDLLTVVRDR-RN-IFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp TTCEEEEETCTTSH--HHHHHHHHH-CTTCEEEEEECCHHHHHHHHHHSTTC-TT-EEEEESCTTCGGGGTTTCCCEEEE
T ss_pred CCCEEEEecCcCCH--HHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhHhh-cC-eeEEEEeccCccccccccceEEEE
Confidence 34689999999999 777888765 45799999999999999999887765 32 788889987532 333 479999
Q ss_pred EEeCC-CcccHHHHHHh-ccCCCceEEEE
Q 027409 118 VVDCT-SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~-K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|.|-. .++...++..+ +.|+|||.++.
T Consensus 152 f~d~~~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 152 YADVAQPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp EECCCCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCChhHHHHHHHHHHhccCCCEEEE
Confidence 99965 44455666544 67888888765
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=90.02 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhc-----CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEE
Q 027409 27 SGVAELLSAMAAGW-----NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEV 99 (223)
Q Consensus 27 p~~g~fL~~L~~~~-----~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~l 99 (223)
|++..++..++... +..+|||+|||+|. .++.+|... ++++++.+|+++++++.|+++++.. |+. |++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~--~~~~la~~~--~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~ 120 (254)
T 2h00_A 46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASC--IYPLLGATL--NGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKV 120 (254)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTT--HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEE
T ss_pred HHHHHHHHHHHhhccccCCCCCEEEEeCCChhH--HHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHc-CCCccEEE
Confidence 67777887777654 35699999999998 666666432 3579999999999999999999998 886 999
Q ss_pred EecchHH-HhcCC-----CCccEEEEe
Q 027409 100 IVRQAEE-VMGEL-----KGVDFLVVD 120 (223)
Q Consensus 100 i~GdA~e-vL~~L-----~~fDfVFID 120 (223)
+.||+.+ .+..+ +.||+|+.+
T Consensus 121 ~~~d~~~~~~~~~~~~~~~~fD~i~~n 147 (254)
T 2h00_A 121 VKVPQKTLLMDALKEESEIIYDFCMCN 147 (254)
T ss_dssp EECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred EEcchhhhhhhhhhcccCCcccEEEEC
Confidence 9999877 33333 269999998
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-09 Score=87.81 Aligned_cols=105 Identities=10% Similarity=-0.117 Sum_probs=75.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch------HHHHHHHHHHhhcCce--EEEEecc-hHH-Hh
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER------SRLAYVKAMYDVVGWV--SEVIVRQ-AEE-VM 108 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e------~~~~Ar~~~~~a~G~~--I~li~Gd-A~e-vL 108 (223)
....++|||||||.|+ .++.++... .++++++.+|++++ +++.|+++++.. |+. |+++.+| ... .+
T Consensus 41 ~~~~~~vLDiGcG~G~--~~~~l~~~~-g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~ 116 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGD--LSAVLADQV-GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-PLGDRLTVHFNTNLSDDLG 116 (275)
T ss_dssp CCTTCEEEEESCTTSH--HHHHHHHHH-CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-TTGGGEEEECSCCTTTCCG
T ss_pred CCCCCEEEEeCCCCCH--HHHHHHHHh-CCCCEEEEEECCccccccHHHHHHHHHHHHhc-CCCCceEEEECChhhhccC
Confidence 3466799999999998 777776543 23589999999997 999999999998 875 9999999 211 12
Q ss_pred c-CCCCccEEEEeCCCc---ccHHHHHHhcc-CCCceEEEEeCC
Q 027409 109 G-ELKGVDFLVVDCTSK---DFARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 109 ~-~L~~fDfVFIDa~K~---~Y~~~f~~~~~-l~~GgvIV~DNv 147 (223)
+ .-+.||+|+....-. +...+++.++. +++||.++....
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2 114799999875432 22445566654 477888777553
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=95.30 Aligned_cols=102 Identities=7% Similarity=-0.019 Sum_probs=79.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH---hcCCCCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV---MGELKGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev---L~~L~~f 114 (223)
.++++|||||||+|. .++.++.+. ++.+++.+|. |+.++.|++++++. |+. |+++.||+.+. ++ +.|
T Consensus 178 ~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~p--~~~ 249 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGK--WATQCVQYN--KEVEVTIVDL-PQQLEMMRKQTAGL-SGSERIHGHGANLLDRDVPFP--TGF 249 (363)
T ss_dssp GCCSEEEEESCTTCH--HHHHHHHHS--TTCEEEEEEC-HHHHHHHHHHHTTC-TTGGGEEEEECCCCSSSCCCC--CCC
T ss_pred cCCCEEEEeCCCcCH--HHHHHHHhC--CCCEEEEEeC-HHHHHHHHHHHHhc-CcccceEEEEccccccCCCCC--CCc
Confidence 588999999999998 777777543 4679999999 99999999999998 875 99999999874 34 589
Q ss_pred cEEEEeC-----CCcccHHHHHHh-ccCCCceEE-EEeCCCC
Q 027409 115 DFLVVDC-----TSKDFARVLRFA-RFSNKGAVL-AFKNAFQ 149 (223)
Q Consensus 115 DfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvI-V~DNvl~ 149 (223)
|+|++-. ..++...++..+ +.++|||.+ |.|.++.
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 9999843 333445677655 567888866 5555553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=89.33 Aligned_cols=117 Identities=7% Similarity=-0.081 Sum_probs=85.9
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.+.|..-+.+..+++.. ...+|||||||+|. .++.++... +++++.+|+++++++.|++++... ..|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~ 107 (266)
T 3ujc_A 35 YISSGGLEATKKILSDIELNENSKVLDIGSGLGG--GCMYINEKY---GAHTHGIDICSNIVNMANERVSGN--NKIIFE 107 (266)
T ss_dssp CCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSH--HHHHHHHHH---CCEEEEEESCHHHHHHHHHTCCSC--TTEEEE
T ss_pred ccccchHHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEE
Confidence 45555555555555544 55699999999998 677777543 579999999999999999887664 228999
Q ss_pred ecchHHHhcC-CCCccEEEEeCCC-----cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 101 VRQAEEVMGE-LKGVDFLVVDCTS-----KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ~GdA~evL~~-L~~fDfVFIDa~K-----~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+|+.+. +- -+.||+|+....- .+...+++.+ +.|+|||.++.-...
T Consensus 108 ~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 108 ANDILTK-EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp ECCTTTC-CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ECccccC-CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999874 32 2489999997643 3445666644 667999998887643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=89.51 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=72.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHH----HHHHHHhhcCce-EEEEecchHHHhcCCCC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLA----YVKAMYDVVGWV-SEVIVRQAEEVMGELKG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~----Ar~~~~~a~G~~-I~li~GdA~evL~~L~~ 113 (223)
.....+|||||||+|+ .++.|+.. .++++++.+|+++++++. |+++..+. ++. ++++.+|+.+ ++....
T Consensus 25 ~~~~~~vLDiGcG~G~--~~~~la~~--~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~-~~~~v~~~~~d~~~-l~~~~~ 98 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGK--HPYKVARQ--NPSRLVVALDADKSRMEKISAKAAAKPAKG-GLPNLLYLWATAER-LPPLSG 98 (218)
T ss_dssp TTSSEEEEEESCTTCH--HHHHHHHH--CTTEEEEEEESCGGGGHHHHHHHTSCGGGT-CCTTEEEEECCSTT-CCSCCC
T ss_pred ccCCCEEEEecCCCCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHhhhhc-CCCceEEEecchhh-CCCCCC
Confidence 5577899999999998 77777653 347899999999997775 34444456 776 9999999988 453322
Q ss_pred ccEEEEeCC-C-------cccHHHHHHh-ccCCCceEEEEe
Q 027409 114 VDFLVVDCT-S-------KDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~-K-------~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.|.|++.-. . .+...+++.+ +.|+|||.+++.
T Consensus 99 ~d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 99 VGELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EEEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred CCEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 277775542 1 1226677655 677999998874
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-09 Score=91.26 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|.+.+.+-..+......+|||||||+|+ .+.+|+.. +++++.||+|+++++.|+++++.. |.. ++++.
T Consensus 11 l~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~--lt~~L~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~ 83 (285)
T 1zq9_A 11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGN--MTVKLLEK----AKKVVACELDPRLVAELHKRVQGT-PVASKLQVLV 83 (285)
T ss_dssp ECCHHHHHHHHHHTCCCTTCEEEEECCTTST--THHHHHHH----SSEEEEEESCHHHHHHHHHHHTTS-TTGGGEEEEE
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCcccH--HHHHHHhh----CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEE
Confidence 4577776666666666677899999999998 77777754 469999999999999999999887 773 99999
Q ss_pred cchHHHhcCCCCccEEEEeCC
Q 027409 102 RQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~ 122 (223)
||+.+. .+..||.|+.+.-
T Consensus 84 ~D~~~~--~~~~fD~vv~nlp 102 (285)
T 1zq9_A 84 GDVLKT--DLPFFDTCVANLP 102 (285)
T ss_dssp SCTTTS--CCCCCSEEEEECC
T ss_pred cceecc--cchhhcEEEEecC
Confidence 999874 3447999999764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-09 Score=93.51 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=79.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
..-++||++|||+|+ .+|.+|.. ..++|+++|+||+.++.+++|++.. |++ |+++.|||.+.+++ ..||.|
T Consensus 124 ~~g~~VlD~~aG~G~--~~i~~a~~---g~~~V~avD~np~a~~~~~~N~~~N-~v~~~v~~~~~D~~~~~~~-~~~D~V 196 (278)
T 3k6r_A 124 KPDELVVDMFAGIGH--LSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLN-KVEDRMSAYNMDNRDFPGE-NIADRI 196 (278)
T ss_dssp CTTCEEEETTCTTTT--TTHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHT-TCTTTEEEECSCTTTCCCC-SCEEEE
T ss_pred CCCCEEEEecCcCcH--HHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEeCcHHHhccc-cCCCEE
Confidence 356889999999998 77776643 2368999999999999999999999 987 99999999987653 479999
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
++|--. .-.++++ +++.+++||+|.+-
T Consensus 197 i~~~p~-~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 197 LMGYVV-RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp EECCCS-SGGGGHHHHHHHEEEEEEEEEE
T ss_pred EECCCC-cHHHHHHHHHHHcCCCCEEEEE
Confidence 999643 3346776 45677999998653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.5e-09 Score=103.65 Aligned_cols=114 Identities=9% Similarity=-0.087 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-----cCce-EEEEec
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-----VGWV-SEVIVR 102 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-----~G~~-I~li~G 102 (223)
.-+++..++...++++|||||||+|+ .+++||.. .++.++|+.||+++++++.|++.++.. .|+. |+++.|
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~--lai~LAr~-g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG 785 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGS--LLDSLLDY-PTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSH--HHHHHTSS-CCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCH--HHHHHHHh-CCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence 35555556666789999999999998 77677532 123479999999999999999987642 1555 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccH-----HHHHH-hccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFA-----RVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~-----~~f~~-~~~l~~GgvIV~D 145 (223)
|+.+.-...+.||+|+.-..-++.. .+++. .+.|+||.+||.+
T Consensus 786 Da~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIIST 834 (950)
T 3htx_A 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834 (950)
T ss_dssp CTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred chHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEe
Confidence 9988433346899999987766654 35554 4778999666654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.4e-10 Score=93.22 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC-chHHHHH---HHHHHhhcCce-EEE
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD-ERSRLAY---VKAMYDVVGWV-SEV 99 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d-~e~~~~A---r~~~~~a~G~~-I~l 99 (223)
++-...+++..+. ....+|||||||+|. .++.||. ..++++++.||++ +.+++.| +++.++. |+. |++
T Consensus 10 ~~~~~~~~~~~~~--~~~~~vLDiGCG~G~--~~~~la~--~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-~~~~v~~ 82 (225)
T 3p2e_A 10 VDLSKDELTEIIG--QFDRVHIDLGTGDGR--NIYKLAI--NDQNTFYIGIDPVKENLFDISKKIIKKPSKG-GLSNVVF 82 (225)
T ss_dssp ECCCHHHHHHHHT--TCSEEEEEETCTTSH--HHHHHHH--TCTTEEEEEECSCCGGGHHHHHHHTSCGGGT-CCSSEEE
T ss_pred ccCCHHHHHHHhC--CCCCEEEEEeccCcH--HHHHHHH--hCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc-CCCCeEE
Confidence 3333455555443 466799999999997 6767764 3457899999999 5555555 8888888 988 999
Q ss_pred EecchHHHhcC-C-CCccEEEEeCC--------CcccHHHHHHh-ccCCCceEEEE
Q 027409 100 IVRQAEEVMGE-L-KGVDFLVVDCT--------SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 100 i~GdA~evL~~-L-~~fDfVFIDa~--------K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+|+.+. +. . +.+|.|++.-. ...+..+|..+ +.|+|||.++.
T Consensus 83 ~~~d~~~l-~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 83 VIAAAESL-PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ECCBTTBC-CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEcCHHHh-hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 99999875 43 2 46777776531 12356677655 67799999988
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-09 Score=94.34 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=77.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+..+|||||||+|. .++.++... ++.+++.+|+ ++.++.|++++.+. |+. |+++.||+.+.++ ..||+|
T Consensus 181 ~~~~~vlDvG~G~G~--~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~--~~~D~v 252 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGG--MLAAIALRA--PHLRGTLVEL-AGPAERARRRFADA-GLADRVTVAEGDFFKPLP--VTADVV 252 (374)
T ss_dssp TTCCEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHT-TCTTTEEEEECCTTSCCS--CCEEEE
T ss_pred CCCCEEEEECCCcCH--HHHHHHHHC--CCCEEEEEeC-HHHHHHHHHHHHhc-CCCCceEEEeCCCCCcCC--CCCCEE
Confidence 467899999999998 677777543 4679999999 99999999999998 886 9999999987444 259999
Q ss_pred EEeCCCc-----ccHHHHHHh-ccCCCce-EEEEeC--CCC
Q 027409 118 VVDCTSK-----DFARVLRFA-RFSNKGA-VLAFKN--AFQ 149 (223)
Q Consensus 118 FIDa~K~-----~Y~~~f~~~-~~l~~Gg-vIV~DN--vl~ 149 (223)
++..--. ....++..+ +.++||| +++.|. ++.
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEG 293 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcC
Confidence 9965433 234667655 5678999 555666 553
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=8.9e-09 Score=92.69 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=79.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+..+|||||||+|. .++.++.. .++.+++.+|+ ++.++.|++++.+. |+. |+++.||..+-++. .||+|
T Consensus 201 ~~~~~vlDvG~G~G~--~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~p~--~~D~v 272 (369)
T 3gwz_A 201 SGAATAVDIGGGRGS--LMAAVLDA--FPGLRGTLLER-PPVAEEARELLTGR-GLADRCEILPGDFFETIPD--GADVY 272 (369)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHHH--CTTCEEEEEEC-HHHHHHHHHHHHHT-TCTTTEEEEECCTTTCCCS--SCSEE
T ss_pred ccCcEEEEeCCCccH--HHHHHHHH--CCCCeEEEEcC-HHHHHHHHHhhhhc-CcCCceEEeccCCCCCCCC--CceEE
Confidence 467899999999998 77777765 34679999999 99999999999998 876 99999999854443 79999
Q ss_pred EEeC-----CCcccHHHHHHh-ccCCCceEEEEeC-CCC
Q 027409 118 VVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN-AFQ 149 (223)
Q Consensus 118 FIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN-vl~ 149 (223)
|+-. ..+...++++.+ +.++|||.++.-+ ++.
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 9844 334445678765 5678888776544 443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.9e-09 Score=85.96 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=73.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
.+..+|||||||+|. .+..|+... ..+++.+|+++++++.|++++... ..++++.+|+.+. +- -+.||+|+
T Consensus 92 ~~~~~vLDiG~G~G~--~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-~~~~~~fD~v~ 163 (254)
T 1xtp_A 92 HGTSRALDCGAGIGR--ITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA-TLPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTH--HHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred cCCCEEEEECCCcCH--HHHHHHHhh---cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC-CCCCCCeEEEE
Confidence 357899999999998 666666543 458999999999999999988764 2389999999773 32 24799999
Q ss_pred EeCCCcc-----cHHHHHHh-ccCCCceEEEEeC
Q 027409 119 VDCTSKD-----FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 119 IDa~K~~-----Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.-..-.. ...++..+ +.|+|||.++.-.
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 8765333 34566544 5678888766543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-09 Score=90.25 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=79.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDf 116 (223)
.+..+|||||||+|. .++.++... ++.+++.+|++ +.++.|++++.+. |+. |+++.||+.+. .+ +.||+
T Consensus 164 ~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~--~~~~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGL--FGIAVAQHN--PNAEIFGVDWA-SVLEVAKENARIQ-GVASRYHTIAGSAFEV--DYGNDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCH--HHHHHHHHC--TTCEEEEEECH-HHHHHHHHHHHHH-TCGGGEEEEESCTTTS--CCCSCEEE
T ss_pred CCCCEEEEECCCcCH--HHHHHHHHC--CCCeEEEEecH-HHHHHHHHHHHhc-CCCcceEEEecccccC--CCCCCCcE
Confidence 567899999999998 666776543 46799999999 9999999999998 886 99999999763 23 35999
Q ss_pred EEEeC-----CCcccHHHHHHh-ccCCCce-EEEEeCCCC
Q 027409 117 LVVDC-----TSKDFARVLRFA-RFSNKGA-VLAFKNAFQ 149 (223)
Q Consensus 117 VFIDa-----~K~~Y~~~f~~~-~~l~~Gg-vIV~DNvl~ 149 (223)
|++-. ..++..++++.+ +.++||| +++.|.+..
T Consensus 236 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred EEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 99933 334456777655 5678999 666666553
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=89.44 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHH-----HhhcCc--
Q 027409 27 SGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAM-----YDVVGW-- 95 (223)
Q Consensus 27 p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~-----~~a~G~-- 95 (223)
|++-.+...+... ...++|||||||+|+ .+++++.. . .++|+.+|+ +++.++.|++|. +.. |+
T Consensus 62 ~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~--~~~~~a~~--~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~-~~~~ 135 (281)
T 3bzb_A 62 SGARALADTLCWQPELIAGKTVCELGAGAGL--VSIVAFLA--G-ADQVVATDYPDPEILNSLESNIREHTANSC-SSET 135 (281)
T ss_dssp CHHHHHHHHHHHCGGGTTTCEEEETTCTTSH--HHHHHHHT--T-CSEEEEEECSCHHHHHHHHHHHHTTCC--------
T ss_pred cHHHHHHHHHHhcchhcCCCeEEEecccccH--HHHHHHHc--C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhc-cccc
Confidence 4444445555443 467899999999998 77777642 1 359999999 999999999999 655 65
Q ss_pred ----eEEEE---ecchHHHhc---CCCCccEEEE-eC--CCcccHHHHHHh-ccCC---C--ceEEE
Q 027409 96 ----VSEVI---VRQAEEVMG---ELKGVDFLVV-DC--TSKDFARVLRFA-RFSN---K--GAVLA 143 (223)
Q Consensus 96 ----~I~li---~GdA~evL~---~L~~fDfVFI-Da--~K~~Y~~~f~~~-~~l~---~--GgvIV 143 (223)
.|+++ .|++.+-+. .-+.||+|+. |. ...++..+++.+ +.++ | ||.++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 27777 455443332 1257999987 75 245567788765 5567 8 99543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=86.73 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=75.4
Q ss_pred HHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 32 LLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
.+..++ ......+|||||||.|. .+..++.. +.+++.+|+++++++.|++++ . ++++.+|+.+. +.
T Consensus 33 ~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~--~----~~~~~~d~~~~-~~ 99 (211)
T 3e23_A 33 TLTKFLGELPAGAKILELGCGAGY--QAEAMLAA----GFDVDATDGSPELAAEASRRL--G----RPVRTMLFHQL-DA 99 (211)
T ss_dssp HHHHHHTTSCTTCEEEESSCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHH--T----SCCEECCGGGC-CC
T ss_pred HHHHHHHhcCCCCcEEEECCCCCH--HHHHHHHc----CCeEEEECCCHHHHHHHHHhc--C----CceEEeeeccC-CC
Confidence 344443 34457899999999998 67677643 579999999999999999887 2 46778998764 33
Q ss_pred CCCccEEEEeCCCc-----ccHHHHHHh-ccCCCceEEEEeC
Q 027409 111 LKGVDFLVVDCTSK-----DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 111 L~~fDfVFIDa~K~-----~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
-+.||+|+....-. +...++..+ +.|+|||.++...
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 141 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141 (211)
T ss_dssp CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 35899999976433 344677654 6679999998863
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-09 Score=92.08 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
++.+|||||||+|. .++.++... ++.+++.+|+ |+.++.|++++.+. |+. |+++.||..+-++. +||+||
T Consensus 169 ~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~p~--~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGGSGG--LLSALLTAH--EDLSGTVLDL-QGPASAAHRRFLDT-GLSGRAQVVVGSFFDPLPA--GAGGYV 240 (332)
T ss_dssp GGSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHT-TCTTTEEEEECCTTSCCCC--SCSEEE
T ss_pred CCCEEEEeCCChhH--HHHHHHHHC--CCCeEEEecC-HHHHHHHHHhhhhc-CcCcCeEEecCCCCCCCCC--CCcEEE
Confidence 46899999999998 777777543 4678999999 99999999999998 885 99999999854443 799999
Q ss_pred Ee-----CCCcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 119 VD-----CTSKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 119 ID-----a~K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
+= -..+...+++..+ +.++|||.++. |.+..
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 84 3334456677755 56688887755 44443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=90.16 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=73.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
..++|||||||+|. .+..++.. . ..+++.+|+++++++.|++++.. ..++++.+|+.+ ++.. +.||+|+.
T Consensus 44 ~~~~vLD~GcG~G~--~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~-~~~~~~~fD~v~~ 114 (253)
T 3g5l_A 44 NQKTVLDLGCGFGW--HCIYAAEH--G-AKKVLGIDLSERMLTEAKRKTTS---PVVCYEQKAIED-IAIEPDAYNVVLS 114 (253)
T ss_dssp TTCEEEEETCTTCH--HHHHHHHT--T-CSEEEEEESCHHHHHHHHHHCCC---TTEEEEECCGGG-CCCCTTCEEEEEE
T ss_pred CCCEEEEECCCCCH--HHHHHHHc--C-CCEEEEEECCHHHHHHHHHhhcc---CCeEEEEcchhh-CCCCCCCeEEEEE
Confidence 67899999999997 67677643 1 23999999999999999988761 128999999976 3422 48999999
Q ss_pred eCCC---cccHHHHHHh-ccCCCceEEEEe
Q 027409 120 DCTS---KDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 120 Da~K---~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
...- .+...+++.+ +.|+|||.+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 115 SLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 7643 3446677654 667999999986
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=97.01 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
.+..++..+ ......+|||+|||+|+ .+++++.. .++++++.+|.++++++.|+++++.. |+.++++.+|+.+.
T Consensus 184 ~~~~ll~~l-~~~~~~~VLDlGcG~G~--~~~~la~~--~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~~d~~~~ 257 (343)
T 2pjd_A 184 GSQLLLSTL-TPHTKGKVLDVGCGAGV--LSVAFARH--SPKIRLTLCDVSAPAVEASRATLAAN-GVEGEVFASNVFSE 257 (343)
T ss_dssp HHHHHHHHS-CTTCCSBCCBTTCTTSH--HHHHHHHH--CTTCBCEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTT
T ss_pred HHHHHHHhc-CcCCCCeEEEecCccCH--HHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHh-CCCCEEEEcccccc
Confidence 344444433 23356799999999998 77777654 24569999999999999999999998 88888899999774
Q ss_pred hcCCCCccEEEEeCCC--------cccHHHHHHh-ccCCCceEEEE
Q 027409 108 MGELKGVDFLVVDCTS--------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K--------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.+ +.||+|+.+.-- .....++..+ +.|+|||.+++
T Consensus 258 ~~--~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 258 VK--GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp CC--SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cc--CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 42 479999997532 2345667654 66788887665
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=97.66 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=80.0
Q ss_pred HHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc
Q 027409 29 VAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 29 ~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
+..+...++.. .+.++|||||||+|. .++.+|.. ...+|+.+|+++ +++.|++++++. |+. |+++.||
T Consensus 143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~--la~~la~~---~~~~V~gvD~s~-~l~~A~~~~~~~-gl~~~v~~~~~d 215 (480)
T 3b3j_A 143 TGTYQRAILQNHTDFKDKIVLDVGCGSGI--LSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSN-NLTDRIVVIPGK 215 (480)
T ss_dssp HHHHHHHHHHTGGGTTTCEEEEESCSTTH--HHHHHHHT---TCSEEEEEECHH-HHHHHHHHHHHT-TCTTTEEEEESC
T ss_pred HHHHHHHHHHhhhhcCCCEEEEecCcccH--HHHHHHHc---CCCEEEEEEcHH-HHHHHHHHHHHc-CCCCcEEEEECc
Confidence 44445555443 367899999999997 66666542 346999999998 999999999999 985 9999999
Q ss_pred hHHHhcCC-CCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEE
Q 027409 104 AEEVMGEL-KGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+. .+ ++||+|+.+.- .+.+.+.+..+ +.|+|||+++.
T Consensus 216 ~~~~--~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 216 VEEV--SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp TTTC--CCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred hhhC--ccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 9873 22 47999998653 23445555544 56799999983
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.1e-09 Score=92.02 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=77.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+..+|||||||+|. .++.++... ++.+++.+|+ ++.++.|++++++. |+. |+++.||+.+.++ ..||+|
T Consensus 182 ~~~~~vLDvG~G~G~--~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~--~~~D~v 253 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGG--FAAAIARRA--PHVSATVLEM-AGTVDTARSYLKDE-GLSDRVDVVEGDFFEPLP--RKADAI 253 (360)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-TTHHHHHHHHHHHT-TCTTTEEEEECCTTSCCS--SCEEEE
T ss_pred ccCcEEEEeCCcCcH--HHHHHHHhC--CCCEEEEecC-HHHHHHHHHHHHhc-CCCCceEEEeCCCCCCCC--CCccEE
Confidence 457899999999998 666776543 4678999999 99999999999998 886 9999999986444 259999
Q ss_pred EEeCCCcc-----cHHHHHHh-ccCCCceEE-EEeCC
Q 027409 118 VVDCTSKD-----FARVLRFA-RFSNKGAVL-AFKNA 147 (223)
Q Consensus 118 FIDa~K~~-----Y~~~f~~~-~~l~~GgvI-V~DNv 147 (223)
++..--.+ ...+++.+ +.++|||.+ +.|.+
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 98654333 24667655 567899955 46666
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=88.00 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=72.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh--cCC-CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM--GEL-KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL--~~L-~~fD 115 (223)
...-.+||++|||+|+ .+..+|... .++|+|+.+|.++.+++...+.-++. -.|+++.|||.+.. ..+ +.||
T Consensus 74 l~~g~~VLDlG~GtG~--~t~~la~~v-~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 74 IRKGTKVLYLGAASGT--TISHVSDII-ELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCTTCEEEEETCTTSH--HHHHHHHHH-TTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCCCEEEEEeecCCH--HHHHHHHHh-CCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceE
Confidence 3456799999999998 676777544 44789999999999865444332221 12899999997632 223 4899
Q ss_pred EEEEeCCCcccHHHH-HHhc-cCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVL-RFAR-FSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f-~~~~-~l~~GgvIV~D 145 (223)
+||.|+....-.+.+ ..+. .|+|||.+++-
T Consensus 149 ~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence 999998765444444 4454 78999998865
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-09 Score=88.99 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=75.2
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCcc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fD 115 (223)
.+......+|||||||+|. .+..++. ++++++.+|+++++++.|++++.. ++++.+|+.+ ++--+.||
T Consensus 52 ~l~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~d~~~-~~~~~~fD 119 (279)
T 3ccf_A 52 LLNPQPGEFILDLGCGTGQ--LTEKIAQ----SGAEVLGTDNAATMIEKARQNYPH-----LHFDVADARN-FRVDKPLD 119 (279)
T ss_dssp HHCCCTTCEEEEETCTTSH--HHHHHHH----TTCEEEEEESCHHHHHHHHHHCTT-----SCEEECCTTT-CCCSSCEE
T ss_pred HhCCCCCCEEEEecCCCCH--HHHHHHh----CCCeEEEEECCHHHHHHHHhhCCC-----CEEEECChhh-CCcCCCcC
Confidence 3445677899999999998 6767764 468999999999999999987622 5889999977 34224799
Q ss_pred EEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+....- .+...++..+ +.|+|||.+++..
T Consensus 120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence 99987653 2345677644 6779999988753
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=89.39 Aligned_cols=102 Identities=9% Similarity=-0.093 Sum_probs=78.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++|||||||+|. .+..++... ++.+++.+|+ ++.++.|++++++. |+. |+++.||+.+. .+..+|+
T Consensus 188 ~~~~~~vLDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~--~~~~~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGD--ISAAMLKHF--PELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKE--SYPEADA 259 (359)
T ss_dssp CTTCCEEEEESCTTCH--HHHHHHHHC--TTCEEEEEEC-GGGHHHHHHHHHHT-TCTTTEEEEECCTTTS--CCCCCSE
T ss_pred CCCCCEEEEECCcccH--HHHHHHHHC--CCCeEEEEec-HHHHHHHHHHHHhc-CCCCCEEEEeCccccC--CCCCCCE
Confidence 3467899999999998 777777543 4679999999 99999999999998 886 99999999874 3345699
Q ss_pred EEEeCCCcc-----cHHHHHHh-ccCCCceEE-EEeCCC
Q 027409 117 LVVDCTSKD-----FARVLRFA-RFSNKGAVL-AFKNAF 148 (223)
Q Consensus 117 VFIDa~K~~-----Y~~~f~~~-~~l~~GgvI-V~DNvl 148 (223)
|++-.--.+ ..++++.+ +.++|||.+ |.|.+.
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 998654333 45567655 567999977 566444
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=87.88 Aligned_cols=97 Identities=13% Similarity=-0.045 Sum_probs=73.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
...+.+|||||||+|. .+..++... ++++++.+|+++++++.|+++.. .++++.+|+.+.. .-+.||+|+
T Consensus 31 ~~~~~~vLdiG~G~G~--~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 31 LERVLNGYDLGCGPGN--STELLTDRY--GVNVITGIDSDDDMLEKAADRLP-----NTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp CSCCSSEEEETCTTTH--HHHHHHHHH--CTTSEEEEESCHHHHHHHHHHST-----TSEEEECCTTTCC-CSSCEEEEE
T ss_pred CCCCCEEEEecCcCCH--HHHHHHHhC--CCCEEEEEECCHHHHHHHHHhCC-----CcEEEECChhhcC-ccCCcCEEE
Confidence 4567899999999998 676776543 36789999999999999998822 2689999998743 224799999
Q ss_pred EeCCCc---ccHHHHHHh-ccCCCceEEEEe
Q 027409 119 VDCTSK---DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~K~---~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
....-. +...++..+ +.|+|||.+++-
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 101 ANAVFQWVPDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp EESCGGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred EeCchhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 976433 446677655 677999988874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=83.68 Aligned_cols=109 Identities=7% Similarity=0.032 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 28 GVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 28 ~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
....++.++... .+..+|||||||+|. .+..++.. +.+++.+|+++++++.|++++.+ ++++.+|+.+
T Consensus 26 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~-----~~~~~~d~~~ 94 (239)
T 3bxo_A 26 EASDIADLVRSRTPEASSLLDVACGTGT--HLEHFTKE----FGDTAGLELSEDMLTHARKRLPD-----ATLHQGDMRD 94 (239)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCTTSH--HHHHHHHH----HSEEEEEESCHHHHHHHHHHCTT-----CEEEECCTTT
T ss_pred HHHHHHHHHHHhcCCCCeEEEecccCCH--HHHHHHHh----CCcEEEEeCCHHHHHHHHHhCCC-----CEEEECCHHH
Confidence 334444555443 467899999999998 66677654 23899999999999999987532 6899999976
Q ss_pred HhcCCCCccEEEEeCC-------CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 107 VMGELKGVDFLVVDCT-------SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~-------K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
. +.-+.||+|+.-.+ .++...+++.+ +.++|||.++++...
T Consensus 95 ~-~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 95 F-RLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp C-CCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred c-ccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 3 22247999995332 23445677655 667999999998643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=85.00 Aligned_cols=105 Identities=9% Similarity=-0.066 Sum_probs=76.1
Q ss_pred HHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 32 LLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
++..+... ....+|||||||+|. .+.+++.. +.+++.+|+++++++.|+++.. ...++++.+|+.+. +-
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~-~~ 112 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGY--GTYKLSRT----GYKAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSL-PF 112 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBC-SS
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCH--HHHHHHHc----CCeEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcC-CC
Confidence 34444443 367799999999998 66677643 6799999999999999988742 22389999999863 32
Q ss_pred -CCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeC
Q 027409 111 -LKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 111 -L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
-+.||+|+.-..-. +...++..+ +.++|||.++.-.
T Consensus 113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 24799999876433 345677654 6679999887754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-09 Score=90.05 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=76.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc------------------------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW------------------------ 95 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~------------------------ 95 (223)
.+.++|||||||+|. .++.++. ... .+++.+|.++++++.|+++++.. +.
T Consensus 55 ~~~~~vLDlGcG~G~--~~~~l~~--~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T 2i62_A 55 VKGELLIDIGSGPTI--YQLLSAC--ESF-TEIIVSDYTDQNLWELQKWLKKE-PGAFDWSPVVTYVCDLEGNRMKGPEK 128 (265)
T ss_dssp CCEEEEEEESCTTCC--GGGTTGG--GTE-EEEEEEESCHHHHHHHHHHHTTC-TTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred cCCCEEEEECCCccH--HHHHHhh--ccc-CeEEEecCCHHHHHHHHHHHhcC-CccccchhhhhhhhcccccccchHHH
Confidence 456799999999998 5655542 111 48999999999999999998765 41
Q ss_pred ----e--E-EEEecchHHHhc--CC--CCccEEEEeCCCc-------ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 96 ----V--S-EVIVRQAEEVMG--EL--KGVDFLVVDCTSK-------DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 96 ----~--I-~li~GdA~evL~--~L--~~fDfVFIDa~K~-------~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
. | +++.+|+.+..+ .. +.||+|+.-..-. ++..++..+ +.|+|||.++....+
T Consensus 129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 1 7 999999987543 22 4799999865433 566777654 677999998886644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-09 Score=84.72 Aligned_cols=107 Identities=10% Similarity=-0.028 Sum_probs=76.5
Q ss_pred HHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 32 LLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 32 fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
+...|.+. ....+|||||||.|. .++.++.. .. .+++.+|+++++++.|+++++.. . .++++.+|+.+. +-
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~--~~~~l~~~--~~-~~v~~~D~s~~~~~~a~~~~~~~-~-~i~~~~~d~~~~-~~ 103 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSA--LSYELFLG--GF-PNVTSVDYSSVVVAAMQACYAHV-P-QLRWETMDVRKL-DF 103 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCS--HHHHHHHT--TC-CCEEEEESCHHHHHHHHHHTTTC-T-TCEEEECCTTSC-CS
T ss_pred HHHHHHHhcCCCCeEEEECCCCcH--HHHHHHHc--CC-CcEEEEeCCHHHHHHHHHhcccC-C-CcEEEEcchhcC-CC
Confidence 55555544 456799999999998 67677643 11 28999999999999999998653 1 289999999774 31
Q ss_pred -CCCccEEEEeCC------------------CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 111 -LKGVDFLVVDCT------------------SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 111 -L~~fDfVFIDa~------------------K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
-+.||+|+.... ..+...+++.+ +.++|||.++.-.
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 147999996532 22446677644 6679999887743
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-09 Score=91.21 Aligned_cols=109 Identities=12% Similarity=-0.086 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+..+.+..++......+|||||||+|. .+++||.. +++|+.||.++++++.|+++++.. .+.+++...+. +.
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~--~a~~La~~----g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~-~~ 103 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRF--LIEKALER----GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITA-EI 103 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTS-CC
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchH--HHHHHHhc----CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeeccc-cc
Confidence 333444444455667899999999998 77788642 579999999999999999998776 44444443332 00
Q ss_pred hcCC-CCccEEEEeCCCcc-----cHHHHHH-hccCCCceEEEEe
Q 027409 108 MGEL-KGVDFLVVDCTSKD-----FARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 108 L~~L-~~fDfVFIDa~K~~-----Y~~~f~~-~~~l~~GgvIV~D 145 (223)
...+ ++||+|+.+..-.+ ....+.. .+.+ |||.++.-
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 1122 47999999975433 3445553 3677 99988764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.1e-09 Score=88.64 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
...+...+.|..++...++++|||||||+|. .++.++. ++++++.+|+++++++.|+++. .++++.+|
T Consensus 17 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d 84 (261)
T 3ege_A 17 VPDIRIVNAIINLLNLPKGSVIADIGAGTGG--YSVALAN----QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGY 84 (261)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEETCTTSH--HHHHHHT----TTCEEEEECSCHHHHHSSCCCT------TEEEECCC
T ss_pred cccHHHHHHHHHHhCCCCCCEEEEEcCcccH--HHHHHHh----CCCEEEEEeCCHHHHHHHHhcc------CCEEEECc
Confidence 3455566666666666788999999999998 7767753 4689999999998877765543 38999999
Q ss_pred hHHHhcCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCce-EEEEeC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGA-VLAFKN 146 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~Gg-vIV~DN 146 (223)
+.+ ++-- +.||+|+.-..- .+...++..+ +.|+ || +++.+-
T Consensus 85 ~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 85 AEN-LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TTS-CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred hhh-CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 976 4422 479999998754 3446677644 6779 99 555553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=91.30 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=80.0
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cC---ce-EEEEecchHHHhcCC-
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VG---WV-SEVIVRQAEEVMGEL- 111 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G---~~-I~li~GdA~evL~~L- 111 (223)
..-+||+||-||-|.|. .+=.++ ..++..+|+.+|+|++.++.||++|... .| .. ++++.+||.+.|.+-
T Consensus 80 ~~p~pk~VLIiGgGdG~--~~revl--k~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~ 155 (294)
T 3o4f_A 80 AHGHAKHVLIIGGGDGA--MLREVT--RHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTS 155 (294)
T ss_dssp HSSCCCEEEEESCTTSH--HHHHHH--TCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSS
T ss_pred hCCCCCeEEEECCCchH--HHHHHH--HcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhcc
Confidence 34689999999999884 222232 1234568999999999999999998642 12 22 999999999999876
Q ss_pred CCccEEEEeCCCc------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 112 KGVDFLVVDCTSK------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 ~~fDfVFIDa~K~------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.||.|++|+--. .| .+||+.+ +.|+|||++++-.
T Consensus 156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 4899999997432 23 6788877 5679999999853
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-09 Score=93.37 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc-------hHHHHHHHHHHhhcCce--EEEE
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE-------RSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~-------e~~~~Ar~~~~~a~G~~--I~li 100 (223)
.++|...+...+..+|||+|||+|. .+++||.. +++|+.+|+++ +.++.|++|.+.. |+. |+++
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~--~a~~lA~~----g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~-~~~~ri~~~ 144 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGR--DSFVLASL----GLTVTAFEQHPAVACLLSDGIRRALLNPETQ-DTAARINLH 144 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCH--HHHHHHHT----TCCEEEEECCHHHHHHHHHHHHHHHHSHHHH-HHHTTEEEE
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCH--HHHHHHHh----CCEEEEEECChhhhHHHHHHHHHHHhHHHhh-CCccCeEEE
Confidence 3444444444455799999999998 78888752 57999999999 9999999999887 774 9999
Q ss_pred ecchHHHhcCC----CCccEEEEeC
Q 027409 101 VRQAEEVMGEL----KGVDFLVVDC 121 (223)
Q Consensus 101 ~GdA~evL~~L----~~fDfVFIDa 121 (223)
.||+.+.++.+ +.||+|++|.
T Consensus 145 ~~d~~~~l~~~~~~~~~fD~V~~dP 169 (258)
T 2r6z_A 145 FGNAAEQMPALVKTQGKPDIVYLDP 169 (258)
T ss_dssp ESCHHHHHHHHHHHHCCCSEEEECC
T ss_pred ECCHHHHHHhhhccCCCccEEEECC
Confidence 99999988755 4799999996
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-09 Score=91.70 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCC--CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC--------c-e-EE
Q 027409 31 ELLSAMAAGWNA--KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG--------W-V-SE 98 (223)
Q Consensus 31 ~fL~~L~~~~~a--k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--------~-~-I~ 98 (223)
+.|...+...+. .+||++|||+|. .++++|.. +++||.+|++++.++.++++++++ . + . |+
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~--dal~lA~~----g~~V~~vE~~~~~~~l~~~~l~~a-~~~~~~~~~l~~~i~ 148 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGR--DAFVLASV----GCRVRMLERNPVVAALLDDGLARG-YADAEIGGWLQERLQ 148 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCH--HHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHH-HHCTTTHHHHHHHEE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCH--HHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHH-HhhHhhhhhhhcCEE
Confidence 334444444455 799999999998 88888753 678999999999999999998765 3 4 3 99
Q ss_pred EEecchHHHhcCC-CCccEEEEeC
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVDC 121 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFIDa 121 (223)
++.||+.+.|+.+ +.||+||+|-
T Consensus 149 ~~~~D~~~~L~~~~~~fDvV~lDP 172 (258)
T 2oyr_A 149 LIHASSLTALTDITPRPQVVYLDP 172 (258)
T ss_dssp EEESCHHHHSTTCSSCCSEEEECC
T ss_pred EEECCHHHHHHhCcccCCEEEEcC
Confidence 9999999999887 4799999997
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=82.02 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=60.4
Q ss_pred CcHHHHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 25 KESGVAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
-.|++..++.. +.. .+.++|||+|||+|+ .+++++.. . +++.+|+++++++. . . .++++.|
T Consensus 6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~--~~~~l~~~----~-~v~gvD~s~~~~~~-------~-~-~~~~~~~ 68 (170)
T 3q87_B 6 PGEDTYTLMDA-LEREGLEMKIVLDLGTSTGV--ITEQLRKR----N-TVVSTDLNIRALES-------H-R-GGNLVRA 68 (170)
T ss_dssp CCHHHHHHHHH-HHHHTCCSCEEEEETCTTCH--HHHHHTTT----S-EEEEEESCHHHHHT-------C-S-SSCEEEC
T ss_pred cCccHHHHHHH-HHhhcCCCCeEEEeccCccH--HHHHHHhc----C-cEEEEECCHHHHhc-------c-c-CCeEEEC
Confidence 35667777777 444 678899999999998 77666432 3 99999999998877 2 1 2789999
Q ss_pred chHHHhcCCCCccEEEEeC
Q 027409 103 QAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa 121 (223)
|+.+.++. +.||+|+.+.
T Consensus 69 d~~~~~~~-~~fD~i~~n~ 86 (170)
T 3q87_B 69 DLLCSINQ-ESVDVVVFNP 86 (170)
T ss_dssp STTTTBCG-GGCSEEEECC
T ss_pred Chhhhccc-CCCCEEEECC
Confidence 99885443 5899999975
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-08 Score=87.18 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=75.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-------c-eEEEEecchHHHh----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG-------W-VSEVIVRQAEEVM---- 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G-------~-~I~li~GdA~evL---- 108 (223)
++.+|||||||+|. .+..++. ...++++.+|+++++++.|++.+... + . .++++.+|+.+..
T Consensus 34 ~~~~VLDlGcG~G~--~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~ 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGG--DLLKWKK---GRINKLVCTDIADVSVKQCQQRYEDM-KNRRDSEYIFSAEFITADSSKELLIDK 107 (313)
T ss_dssp -CCEEEEETCTTTT--THHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHH-HSSSCC-CCCEEEEEECCTTTSCSTTT
T ss_pred CCCEEEEECCCCcH--HHHHHHh---cCCCEEEEEeCCHHHHHHHHHHHHHh-hhcccccccceEEEEEecccccchhhh
Confidence 67899999999998 5656653 23679999999999999999998864 3 1 3999999998752
Q ss_pred -cC-CCCccEEEEeCCC-------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 109 -GE-LKGVDFLVVDCTS-------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 109 -~~-L~~fDfVFIDa~K-------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+. -+.||+|+.-..- .+...+|..+ +.|+|||++++.-
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 108 FRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp CSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 21 1379999987533 2234677655 6679999998764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=88.90 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=76.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEe
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFID 120 (223)
++|||||||+|. .+..++... ++.+++.+|+ ++.++.|++++++. |+. |+++.||..+-++ +.||+||+-
T Consensus 169 ~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~--~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGE--LTKAILQAE--PSARGVMLDR-EGSLGVARDNLSSL-LAGERVSLVGGDMLQEVP--SNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCH--HHHHHHHHC--TTCEEEEEEC-TTCTHHHHHHTHHH-HHTTSEEEEESCTTTCCC--SSCSEEEEE
T ss_pred CEEEEeCCCchH--HHHHHHHHC--CCCEEEEeCc-HHHHHHHHHHHhhc-CCCCcEEEecCCCCCCCC--CCCCEEEEc
Confidence 899999999998 676776543 4679999999 99999999999988 775 9999999987433 479999987
Q ss_pred CCCccc-----HHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 121 CTSKDF-----ARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 121 a~K~~Y-----~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
.--.++ ..++..+ +.++|||.++. |.++.
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 654333 4667655 56788886655 44443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=89.27 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDfVF 118 (223)
+++|||||||+|. .+..++... ++.+++.+|. ++.++.|++++++. ++. |+++.||..+.-+.. ++||+|+
T Consensus 180 ~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGT--YLAQVLRRH--PQLTGQIWDL-PTTRDAARKTIHAH-DLGGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCH--HHHHHHHHC--TTCEEEEEEC-GGGHHHHHHHHHHT-TCGGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCEEEEeCCCcCH--HHHHHHHhC--CCCeEEEEEC-HHHHHHHHHHHHhc-CCCCceEEEeCCcccCcccCCCCccEEE
Confidence 8899999999998 777777543 4689999999 89999999999998 886 999999998753212 4699999
Q ss_pred EeCC-----CcccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 119 VDCT-----SKDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 119 IDa~-----K~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
+-.- .++...++..+ +.++|||.++. |.++.
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 8543 33446677655 56788886655 44543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.81 E-value=8e-09 Score=91.20 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++|...+.+...+......+|||||||+|+ .+..|+. .+++|+.+|+|+++++.|+++++.. |+. ++++.|
T Consensus 25 l~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~--lt~~La~----~~~~v~~vDi~~~~~~~a~~~~~~~-~~~~v~~~~~ 97 (299)
T 2h1r_A 25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGN--LTVKLLP----LAKKVITIDIDSRMISEVKKRCLYE-GYNNLEVYEG 97 (299)
T ss_dssp ECCHHHHHHHHHHHCCCTTCEEEEECCTTST--THHHHTT----TSSEEEEECSCHHHHHHHHHHHHHT-TCCCEEC---
T ss_pred ecCHHHHHHHHHhcCCCCcCEEEEEcCcCcH--HHHHHHh----cCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEEEC
Confidence 5677777777766766778899999999998 7767653 2579999999999999999999988 877 999999
Q ss_pred chHHHhcCCCCccEEEEeCC
Q 027409 103 QAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~ 122 (223)
|+.+.- +..||.|+.|.-
T Consensus 98 D~~~~~--~~~~D~Vv~n~p 115 (299)
T 2h1r_A 98 DAIKTV--FPKFDVCTANIP 115 (299)
T ss_dssp -CCSSC--CCCCSEEEEECC
T ss_pred chhhCC--cccCCEEEEcCC
Confidence 998742 347999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=91.14 Aligned_cols=106 Identities=10% Similarity=0.087 Sum_probs=80.0
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc----C-c--e-EEEEecchHHHhc-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV----G-W--V-SEVIVRQAEEVMG- 109 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~----G-~--~-I~li~GdA~evL~- 109 (223)
.....+|||||||+|. .++.|+... .++++++.+|+++++++.|++++++.. | + . |+++.||+.+...
T Consensus 81 ~~~~~~VLDlGcG~G~--~~~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGR--DVYLASKLV-GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCTTSH--HHHHHHHHH-TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCccCH--HHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 4577899999999998 677776543 246899999999999999999987530 2 2 3 9999999987521
Q ss_pred ---CC--CCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 110 ---EL--KGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 110 ---~L--~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.+ +.||+|+...--. +...++..+ +.|+|||.++.-..
T Consensus 158 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp BSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 22 3799999987432 346777654 67799999888554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=83.49 Aligned_cols=114 Identities=6% Similarity=-0.086 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 27 SGVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
|.--+|....... -.|.+|||+|||+|- .++.++ ...++.+++.+|+|+.+++.|+++++.. |...++...|..
T Consensus 34 p~ld~fY~~~~~~l~~~~~VLDlGCG~Gp--lAl~l~--~~~p~a~~~A~Di~~~~leiar~~~~~~-g~~~~v~~~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIKHVSSILDFGCGFNP--LALYQW--NENEKIIYHAYDIDRAEIAFLSSIIGKL-KTTIKYRFLNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHSCCCSEEEEETCTTHH--HHHHHH--CSSCCCEEEEECSCHHHHHHHHHHHHHS-CCSSEEEEECCH
T ss_pred HhHHHHHHHHHhhcCCCCeEEEecCCCCH--HHHHHH--hcCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCccEEEeccc
Confidence 6666776665554 569999999999996 555554 3455779999999999999999999998 887333336666
Q ss_pred HHhcCCCCccEEEEeCCCc----ccHHHHHHhccCCCceEEEEeC
Q 027409 106 EVMGELKGVDFLVVDCTSK----DFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~----~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
+..+. .+||.|+.=--=. +=...++.+..++|||++|.=.
T Consensus 109 ~~~~~-~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 109 SDVYK-GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHTT-SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred ccCCC-CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 54332 4799998632100 0011224446678899988776
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=85.44 Aligned_cols=109 Identities=6% Similarity=-0.143 Sum_probs=77.1
Q ss_pred HHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 30 AELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
.+.+..+.. .....+|||||||+|+ .+..|+.. +.+++.+|+++++++.|++++.. ..++++.+|+.+.-
T Consensus 44 ~~~~~~~~~~~~~~~~vLD~GcG~G~--~~~~la~~----~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 114 (245)
T 3ggd_A 44 VVDLPRFELLFNPELPLIDFACGNGT--QTKFLSQF----FPRVIGLDVSKSALEIAAKENTA---ANISYRLLDGLVPE 114 (245)
T ss_dssp HHHHHHHTTTSCTTSCEEEETCTTSH--HHHHHHHH----SSCEEEEESCHHHHHHHHHHSCC---TTEEEEECCTTCHH
T ss_pred HHHHHHHhhccCCCCeEEEEcCCCCH--HHHHHHHh----CCCEEEEECCHHHHHHHHHhCcc---cCceEEECcccccc
Confidence 344444433 3455799999999998 77777754 23899999999999999998732 23899999997632
Q ss_pred cC--C---CCccEEEEeCCCc-----ccHHHHHHh-ccCCCceE-EEEeCC
Q 027409 109 GE--L---KGVDFLVVDCTSK-----DFARVLRFA-RFSNKGAV-LAFKNA 147 (223)
Q Consensus 109 ~~--L---~~fDfVFIDa~K~-----~Y~~~f~~~-~~l~~Ggv-IV~DNv 147 (223)
.. + ..||+|+...--. +...++..+ +.|+|||. +++|..
T Consensus 115 ~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 21 2 1499999986433 445777755 56799996 666654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=86.38 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=69.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFI 119 (223)
.+.+|||||||+|. .+..++.. +.+++.+|+++++++.|+++.. . .++.+|+.+ ++- -+.||+|+.
T Consensus 54 ~~~~vLDiGcG~G~--~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~-~-----~~~~~d~~~-~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGK--WSLFLQER----GFEVVLVDPSKEMLEVAREKGV-K-----NVVEAKAED-LPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCH--HHHHHHTT----TCEEEEEESCHHHHHHHHHHTC-S-----CEEECCTTS-CCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCH--HHHHHHHc----CCeEEEEeCCHHHHHHHHhhcC-C-----CEEECcHHH-CCCCCCCEEEEEE
Confidence 67899999999998 66666532 5799999999999999998754 2 278899876 332 247999998
Q ss_pred eCCCc----ccHHHHHHh-ccCCCceEEEEe
Q 027409 120 DCTSK----DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 120 Da~K~----~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
...-. +...+++.+ +.|+|||.+++.
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 121 LGDVLSYVENKDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhccccHHHHHHHHHHHcCCCeEEEEE
Confidence 65322 346667654 677999998864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=84.79 Aligned_cols=108 Identities=10% Similarity=-0.032 Sum_probs=75.9
Q ss_pred CCcHHHHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe
Q 027409 24 IKESGVAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~ 101 (223)
...|-...+...+... ....+|||||||.|+ .+..++... ++++++.+|+++++++.|+++..+ ++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~ 136 (269)
T 1p91_A 66 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY--YTHAFADAL--PEITTFGLDVSKVAIKAAAKRYPQ-----VTFCV 136 (269)
T ss_dssp TTHHHHHHHHHHHHHHSCTTCCEEEEETCTTST--THHHHHHTC--TTSEEEEEESCHHHHHHHHHHCTT-----SEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEECCCCCH--HHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhCCC-----cEEEE
Confidence 3445455555555554 467899999999998 666776542 467999999999999999886532 58899
Q ss_pred cchHHHhcC-CCCccEEEEeCCCcccHHHHHH-hccCCCceEEEEe
Q 027409 102 RQAEEVMGE-LKGVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 102 GdA~evL~~-L~~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
+|+.+ ++- -+.||+|+.-... ..++. .+.|+|||.++.-
T Consensus 137 ~d~~~-~~~~~~~fD~v~~~~~~----~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 137 ASSHR-LPFSDTSMDAIIRIYAP----CKAEELARVVKPGGWVITA 177 (269)
T ss_dssp CCTTS-CSBCTTCEEEEEEESCC----CCHHHHHHHEEEEEEEEEE
T ss_pred cchhh-CCCCCCceeEEEEeCCh----hhHHHHHHhcCCCcEEEEE
Confidence 99875 332 1479999975443 24543 4667888877653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=85.74 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh----------------cCc---------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV----------------VGW--------- 95 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a----------------~G~--------- 95 (223)
+..+|||||||+|. .++.++ ...+.+|+.+|+++++++.|++++++. .|.
T Consensus 71 ~~~~vLDiGcG~G~--~~~l~~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTV--YQLLSA---CSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCC--GGGTTG---GGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcCh--HHHHhh---ccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 67899999999997 443332 223569999999999999999866531 020
Q ss_pred -----eEEEEecchHHHhc----CC--CCccEEEEeCCC-------cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 96 -----VSEVIVRQAEEVMG----EL--KGVDFLVVDCTS-------KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 96 -----~I~li~GdA~evL~----~L--~~fDfVFIDa~K-------~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.++++.+|+.+.++ .+ +.||+|+.=..- .++..+|..+ +.|+|||.+++...+
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 15778889877443 23 259999987542 2456667644 677999999886533
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-08 Score=90.30 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=76.5
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-------hhcCc--e-EEEEecchHH
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-------DVVGW--V-SEVIVRQAEE 106 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-------~a~G~--~-I~li~GdA~e 106 (223)
+....-.+||+||||+|. .++.+|.. ....+++.||+++++++.|+++.+ .. |+ . |+|+.||+.+
T Consensus 169 l~l~~gd~VLDLGCGtG~--l~l~lA~~--~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~-Gl~~~rVefi~GD~~~ 243 (438)
T 3uwp_A 169 IKMTDDDLFVDLGSGVGQ--VVLQVAAA--TNCKHHYGVEKADIPAKYAETMDREFRKWMKWY-GKKHAEYTLERGDFLS 243 (438)
T ss_dssp HCCCTTCEEEEESCTTSH--HHHHHHHH--CCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-TBCCCEEEEEECCTTS
T ss_pred cCCCCCCEEEEeCCCCCH--HHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-CCCCCCeEEEECcccC
Confidence 344566799999999997 66666643 223479999999999999998753 45 76 3 9999999977
Q ss_pred Hh-cC-CCCccEEEEeCC--CcccHHHH-HHhccCCCceEEEEeCCCC
Q 027409 107 VM-GE-LKGVDFLVVDCT--SKDFARVL-RFARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 107 vL-~~-L~~fDfVFIDa~--K~~Y~~~f-~~~~~l~~GgvIV~DNvl~ 149 (223)
.- +. +..||+||+-.- ..+-...| +.++.|+|||.||+-..+.
T Consensus 244 lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 244 EEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp HHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred CccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 32 11 247999998542 12223334 3457789999999987653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=87.76 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 31 ELLSAMAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
+++..|..... ..+|||||||+|. .+..|+. .+.+|+.+|+++++++.|+++ . .|+++.|||.+. +
T Consensus 28 ~l~~~l~~~~~~~~~vLDvGcGtG~--~~~~l~~----~~~~v~gvD~s~~ml~~a~~~---~---~v~~~~~~~e~~-~ 94 (257)
T 4hg2_A 28 ALFRWLGEVAPARGDALDCGCGSGQ--ASLGLAE----FFERVHAVDPGEAQIRQALRH---P---RVTYAVAPAEDT-G 94 (257)
T ss_dssp HHHHHHHHHSSCSSEEEEESCTTTT--THHHHHT----TCSEEEEEESCHHHHHTCCCC---T---TEEEEECCTTCC-C
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCH--HHHHHHH----hCCEEEEEeCcHHhhhhhhhc---C---Cceeehhhhhhh-c
Confidence 34555555543 4689999999998 6767753 357999999999998776531 1 289999999653 3
Q ss_pred C-CCCccEEEEeCCCccc---HHHHHHh-ccCCCceEEEE
Q 027409 110 E-LKGVDFLVVDCTSKDF---ARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 110 ~-L~~fDfVFIDa~K~~Y---~~~f~~~-~~l~~GgvIV~ 144 (223)
- -+.||+|+.-..- ++ .+++..+ +.|+|||++++
T Consensus 95 ~~~~sfD~v~~~~~~-h~~~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 95 LPPASVDVAIAAQAM-HWFDLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp CCSSCEEEEEECSCC-TTCCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCcccEEEEeeeh-hHhhHHHHHHHHHHHcCCCCEEEE
Confidence 1 1479999985332 33 5566544 77899998754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=94.86 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=63.0
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce-EEEEecchHHHhcCC--CCccEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV-SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~-I~li~GdA~evL~~L--~~fDfV 117 (223)
-++||++|||+|+ .+++||.. +++|+.+|+|+++++.|++|++.. .|+. |+++.||+.+.|+.+ +.||+|
T Consensus 94 g~~VLDLgcG~G~--~al~LA~~----g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 94 GTKVVDLTGGLGI--DFIALMSK----ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp TCEEEESSCSSSH--HHHHHHTT----CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred CCEEEEeCCCchH--HHHHHHhc----CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEE
Confidence 5899999999998 77777632 579999999999999999999874 1555 999999999987764 489999
Q ss_pred EEeC
Q 027409 118 VVDC 121 (223)
Q Consensus 118 FIDa 121 (223)
|+|-
T Consensus 168 ~lDP 171 (410)
T 3ll7_A 168 YVDP 171 (410)
T ss_dssp EECC
T ss_pred EECC
Confidence 9994
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=86.13 Aligned_cols=89 Identities=15% Similarity=0.018 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.++|.+.+.+-..+......+|||||||+|+ .|..|+.. +++|++||+|+++++.|+++++.. + .++++.||
T Consensus 33 L~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~--lT~~La~~----~~~V~aVEid~~li~~a~~~~~~~-~-~v~vi~gD 104 (295)
T 3gru_A 33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGI--LTEELAKN----AKKVYVIEIDKSLEPYANKLKELY-N-NIEIIWGD 104 (295)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEEESCGGGHHHHHHHHHHC-S-SEEEEESC
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEECCCchH--HHHHHHhc----CCEEEEEECCHHHHHHHHHHhccC-C-CeEEEECc
Confidence 6788777777666666777899999999998 78788754 479999999999999999999843 2 39999999
Q ss_pred hHHH-hcCCCCccEEEEeC
Q 027409 104 AEEV-MGELKGVDFLVVDC 121 (223)
Q Consensus 104 A~ev-L~~L~~fDfVFIDa 121 (223)
+++. ++. .+||.|+...
T Consensus 105 ~l~~~~~~-~~fD~Iv~Nl 122 (295)
T 3gru_A 105 ALKVDLNK-LDFNKVVANL 122 (295)
T ss_dssp TTTSCGGG-SCCSEEEEEC
T ss_pred hhhCCccc-CCccEEEEeC
Confidence 9874 232 2699999664
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=83.08 Aligned_cols=92 Identities=18% Similarity=0.091 Sum_probs=69.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVF 118 (223)
...+|||||||+|. .+..+ +. +++.+|+++++++.|++++ .. ++++.+|+.+ ++-- +.||+|+
T Consensus 36 ~~~~vLdiG~G~G~--~~~~l-------~~~~v~~vD~s~~~~~~a~~~~-~~----~~~~~~d~~~-~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGY--WLRRL-------PYPQKVGVEPSEAMLAVGRRRA-PE----ATWVRAWGEA-LPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCH--HHHHC-------CCSEEEEECCCHHHHHHHHHHC-TT----SEEECCCTTS-CCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCH--hHHhC-------CCCeEEEEeCCHHHHHHHHHhC-CC----cEEEEccccc-CCCCCCcEEEEE
Confidence 67899999999997 44443 34 8999999999999999887 21 6889999876 3321 4799999
Q ss_pred EeCCCc---ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 119 VDCTSK---DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 119 IDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
....-+ +...++..+ +.++|||.++....
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 101 LFTTLEFVEDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp EESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcChhhhcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 886533 346677654 66799998887643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=77.08 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=72.1
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDf 116 (223)
...+..+|||||||.|. .+.+++.. .++++.+|.+++.++.|+++ . . .|+++.+| ++-- +.||+
T Consensus 14 ~~~~~~~vLDiG~G~G~--~~~~l~~~----~~~v~~vD~s~~~~~~a~~~---~-~-~v~~~~~d----~~~~~~~~D~ 78 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGF--YCKYLLEF----ATKLYCIDINVIALKEVKEK---F-D-SVITLSDP----KEIPDNSVDF 78 (170)
T ss_dssp HSSCCEEEEEETCTTCT--THHHHHTT----EEEEEEECSCHHHHHHHHHH---C-T-TSEEESSG----GGSCTTCEEE
T ss_pred CcCCCCeEEEECCCCCH--HHHHHHhh----cCeEEEEeCCHHHHHHHHHh---C-C-CcEEEeCC----CCCCCCceEE
Confidence 45667799999999998 66677643 24999999999999999998 2 1 27999999 3322 47999
Q ss_pred EEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 117 LVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 117 VFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+....-. +...+++.+ +.++|||.++.-+..
T Consensus 79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 99886544 346677654 667999988876543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-08 Score=85.91 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=69.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+.+.+-..+......+|||||||+|+ .|..|+.. +++|++||+|+++++.++++++.. + .++++.||
T Consensus 12 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~La~~----~~~V~avEid~~~~~~~~~~~~~~-~-~v~~i~~D 83 (255)
T 3tqs_A 12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGA--LTDYLLTE----CDNLALVEIDRDLVAFLQKKYNQQ-K-NITIYQND 83 (255)
T ss_dssp ECCHHHHHHHHHHHCCCTTCEEEEECCTTTT--THHHHTTT----SSEEEEEECCHHHHHHHHHHHTTC-T-TEEEEESC
T ss_pred ccCHHHHHHHHHhcCCCCcCEEEEEcccccH--HHHHHHHh----CCEEEEEECCHHHHHHHHHHHhhC-C-CcEEEEcc
Confidence 5678888877777777788899999999998 77777532 479999999999999999998753 2 28999999
Q ss_pred hHHH-hcCC---CCccEEEE
Q 027409 104 AEEV-MGEL---KGVDFLVV 119 (223)
Q Consensus 104 A~ev-L~~L---~~fDfVFI 119 (223)
+++. ++++ ++|| |+-
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~ 102 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVG 102 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEE
T ss_pred hHhCCHHHhccCCCeE-EEe
Confidence 9985 5555 3688 443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.2e-08 Score=89.11 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=78.5
Q ss_pred HHHHHHHH---HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch
Q 027409 30 AELLSAMA---AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~L~---~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA 104 (223)
..|-.++. ...+-|.||+||||+|. .+++.|.|. -.+|+.||.++ +++.|+++++.. |++ |+++.||+
T Consensus 69 ~aY~~Ai~~~~~~~~~k~VLDvG~GtGi--Ls~~Aa~aG---A~~V~ave~s~-~~~~a~~~~~~n-~~~~~i~~i~~~~ 141 (376)
T 4hc4_A 69 DAYRLGILRNWAALRGKTVLDVGAGTGI--LSIFCAQAG---ARRVYAVEASA-IWQQAREVVRFN-GLEDRVHVLPGPV 141 (376)
T ss_dssp HHHHHHHHTTHHHHTTCEEEEETCTTSH--HHHHHHHTT---CSEEEEEECST-THHHHHHHHHHT-TCTTTEEEEESCT
T ss_pred HHHHHHHHhCHHhcCCCEEEEeCCCccH--HHHHHHHhC---CCEEEEEeChH-HHHHHHHHHHHc-CCCceEEEEeeee
Confidence 44444443 34567899999999997 776655441 14899999985 899999999998 987 99999999
Q ss_pred HHHhcCC-CCccEEEEe---CC---CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 105 EEVMGEL-KGVDFLVVD---CT---SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 105 ~evL~~L-~~fDfVFID---a~---K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.++ .+ ++||+|+-. .. -.....++.+. +.|+|||+++-+-
T Consensus 142 ~~~--~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 142 ETV--ELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp TTC--CCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred eee--cCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence 874 23 489999863 21 12334455555 5779999998654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=83.87 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=69.3
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-------EEEEecch----H-HHhc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-------SEVIVRQA----E-EVMG 109 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-------I~li~GdA----~-evL~ 109 (223)
..+||+||||+|. .+..++. ...++|+.||+++++++.|++...+. +.. ++++.+|+ . +.|+
T Consensus 49 ~~~VLDlGCG~G~--~l~~~~~---~~~~~v~GiD~S~~~l~~A~~~~~~~-~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 49 KRKVLAIDFGNGA--DLEKYFY---GEIALLVATDPDADAIARGNERYNKL-NSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp CCEEEETTCTTTT--THHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHH-CC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCeEEEEecCCcH--hHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhc-cccccccccccchhhhhcccchhhhhhh
Confidence 5799999999995 2323332 22469999999999999999998887 642 56766665 2 2343
Q ss_pred C-C--CCccEEEEeCC------CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 110 E-L--KGVDFLVVDCT------SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 110 ~-L--~~fDfVFIDa~------K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. + +.||+|+.-.. .++...++..+ +.|+|||++++.-
T Consensus 123 ~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 123 EVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp TTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 3 47999985421 12446777755 6789999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-08 Score=75.79 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=66.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH-----hcC-C-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV-----MGE-L- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev-----L~~-L- 111 (223)
.....+|||+|||+|. .+++++... .++++++.+|.++ +.+. . .++++.+|+.+. ++. +
T Consensus 20 ~~~~~~vLd~G~G~G~--~~~~l~~~~-~~~~~v~~~D~~~-~~~~-------~---~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGG--WSQYVVTQI-GGKGRIIACDLLP-MDPI-------V---GVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCH--HHHHHHHHH-CTTCEEEEEESSC-CCCC-------T---TEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCH--HHHHHHHHh-CCCCeEEEEECcc-cccc-------C---cEEEEEcccccchhhhhhhccCC
Confidence 4567799999999998 676776543 3458999999999 6422 1 179999999764 211 2
Q ss_pred -CCccEEEEeCCCc---cc-----------HHHHHHh-ccCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSK---DF-----------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~---~Y-----------~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.||+|+.|..-. .. ..+++.+ +.++|||.+++-.
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4799999986432 11 4666644 6679999998743
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=79.18 Aligned_cols=114 Identities=10% Similarity=-0.056 Sum_probs=79.2
Q ss_pred HHHHHHHHH----hcCCCeEEEEccCc---chHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 30 AELLSAMAA----GWNAKLIVEAWTHG---GPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 30 g~fL~~L~~----~~~ak~ILEIGT~~---Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
..|+..+++ ..+.++||+||||+ |. .+..++. ..++++|+.+|.+|++++.|++.+... + .++++.|
T Consensus 62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~--~~~~~~~--~~p~~~v~~vD~sp~~l~~Ar~~~~~~-~-~v~~~~~ 135 (274)
T 2qe6_A 62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQN--THEVAQS--VNPDARVVYVDIDPMVLTHGRALLAKD-P-NTAVFTA 135 (274)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSC--HHHHHHH--HCTTCEEEEEESSHHHHHHHHHHHTTC-T-TEEEEEC
T ss_pred hHHHHHHHHHHhhccCCCEEEEECCCCCCCCh--HHHHHHH--hCCCCEEEEEECChHHHHHHHHhcCCC-C-CeEEEEe
Confidence 345544433 33568999999999 97 4433332 234689999999999999999998543 2 2899999
Q ss_pred chHHH--h-------cCC--CCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 103 QAEEV--M-------GEL--KGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~ev--L-------~~L--~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
|+.+. + ..+ +.||+|++-.- .+.....|..+ +.|+|||.++......
T Consensus 136 D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 136 DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 98642 1 123 47999987642 22356677654 6789999988877544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.64 E-value=8.1e-08 Score=79.30 Aligned_cols=100 Identities=25% Similarity=0.179 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
....+..+.+....++|||||||+|. .+..++. . +.+|.++++++.|+++ . ++++.+|+.+ +
T Consensus 35 ~~~~~~~l~~~~~~~~vLDiG~G~G~--~~~~l~~--~------~~vD~s~~~~~~a~~~---~----~~~~~~d~~~-~ 96 (219)
T 1vlm_A 35 YLSELQAVKCLLPEGRGVEIGVGTGR--FAVPLKI--K------IGVEPSERMAEIARKR---G----VFVLKGTAEN-L 96 (219)
T ss_dssp HHHHHHHHHHHCCSSCEEEETCTTST--THHHHTC--C------EEEESCHHHHHHHHHT---T----CEEEECBTTB-C
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCCCH--HHHHHHH--H------hccCCCHHHHHHHHhc---C----CEEEEccccc-C
Confidence 34455666777778999999999998 5555531 1 9999999999999887 3 6889999865 3
Q ss_pred cCC-CCccEEEEeCCC---cccHHHHHHh-ccCCCceEEEEeC
Q 027409 109 GEL-KGVDFLVVDCTS---KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+.- +.||+|+....- .+...+++.+ +.++|||.++...
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 97 PLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp CSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 322 479999988643 2346677655 5679999988764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-08 Score=90.47 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=75.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh----cCc---e-EEEEecchHHHhcC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV----VGW---V-SEVIVRQAEEVMGE 110 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a----~G~---~-I~li~GdA~evL~~ 110 (223)
..+||+||-||-|.|. ++.-+ .+.+..+|+.+|+||+.++.||++|... +.. . ++++.+||.+.|.+
T Consensus 203 ~~~pkrVLIIGgGdG~---~~rev--lkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~ 277 (381)
T 3c6k_A 203 DYTGKDVLILGGGDGG---ILCEI--VKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR 277 (381)
T ss_dssp CCTTCEEEEEECTTCH---HHHHH--HTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHH
T ss_pred cCCCCeEEEECCCcHH---HHHHH--HhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHh
Confidence 3478999999999885 32222 2333479999999999999999997532 111 1 89999999999975
Q ss_pred C----CCccEEEEeCCC------------cc-cHHHHHHh-ccCCCceEEEEe
Q 027409 111 L----KGVDFLVVDCTS------------KD-FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 111 L----~~fDfVFIDa~K------------~~-Y~~~f~~~-~~l~~GgvIV~D 145 (223)
. +.||.|++|+.- .. +.++|+.+ +.|++||+++.-
T Consensus 278 ~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 278 YAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3 379999999631 11 25677776 467999999963
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=81.78 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+.+-+-..+..... +|||||||+|+ .|..|+.. +++|+.+|+|+++++.+++++... .++++.||
T Consensus 30 L~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~--lt~~L~~~----~~~V~avEid~~~~~~l~~~~~~~---~v~vi~~D 99 (271)
T 3fut_A 30 LVSEAHLRRIVEAARPFTG-PVFEVGPGLGA--LTRALLEA----GAEVTAIEKDLRLRPVLEETLSGL---PVRLVFQD 99 (271)
T ss_dssp ECCHHHHHHHHHHHCCCCS-CEEEECCTTSH--HHHHHHHT----TCCEEEEESCGGGHHHHHHHTTTS---SEEEEESC
T ss_pred cCCHHHHHHHHHhcCCCCC-eEEEEeCchHH--HHHHHHHc----CCEEEEEECCHHHHHHHHHhcCCC---CEEEEECC
Confidence 6788877777666666655 99999999998 77777753 478999999999999999987632 38999999
Q ss_pred hHHH-hcCCCCccEEEEeC
Q 027409 104 AEEV-MGELKGVDFLVVDC 121 (223)
Q Consensus 104 A~ev-L~~L~~fDfVFIDa 121 (223)
+++. ++++..+|.|+-.-
T Consensus 100 ~l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 100 ALLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp GGGSCGGGSCTTEEEEEEE
T ss_pred hhhCChhhccCccEEEecC
Confidence 9985 44444688877654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.4e-08 Score=77.81 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=69.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfV 117 (223)
.+..+|||||||.|. .+.+++. . +.+++.+|++++.++.|++++ .+++.+|+.+....+ +.||+|
T Consensus 31 ~~~~~vLdiG~G~G~--~~~~l~~--~--~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGA--LGAAIKE--N--GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHT--T--TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred cCCCcEEEeCCCCCH--HHHHHHh--c--CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEE
Confidence 478899999999998 6666653 2 479999999999988887643 367889987643333 479999
Q ss_pred EEeCCCcc---cHHHHHHh-ccCCCceEEEEeC
Q 027409 118 VVDCTSKD---FARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~~---Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+....-.+ ...+++.+ +.++|||.+++..
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 98 IFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp EEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred EECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 98754333 35666655 5679999988753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=80.97 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=70.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHH--hcCCCCcEE--EEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhc----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAI--AARHTCARH--VCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMG---- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~--A~~~~~g~i--~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~---- 109 (223)
...+|||||||+|. .++.++. +...++.++ +.+|+++++++.|++.+++..|+. +++..+++.+...
T Consensus 52 ~~~~VLDiG~GtG~--~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 52 SEIKILSIGGGAGE--IDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp SEEEEEEETCTTSH--HHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCH--HHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 45699999999996 4432221 222245655 999999999999999987631443 5667888876542
Q ss_pred CC--CCccEEEEeCCCcc---cHHHHHHh-ccCCCceEEEEe
Q 027409 110 EL--KGVDFLVVDCTSKD---FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 110 ~L--~~fDfVFIDa~K~~---Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+ +.||+|+.=..-.. -...+..+ +.|+|||.+++-
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence 12 47999998754333 35566544 677999988864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-08 Score=84.77 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=71.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcC-------------------------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVG------------------------- 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G------------------------- 94 (223)
+.++|||||||+|. .+++++ . .+ .+|+.+|.++.+++.|++++++. .
T Consensus 55 ~g~~vLDiGCG~G~--~~~~~~--~--~~~~~v~g~D~s~~~l~~a~~~~~~~-~~~~d~s~~~~~~~~~~~~~~~~~~~ 127 (263)
T 2a14_A 55 QGDTLIDIGSGPTI--YQVLAA--C--DSFQDITLSDFTDRNREELEKWLKKE-PGAYDWTPAVKFACELEGNSGRWEEK 127 (263)
T ss_dssp CEEEEEESSCTTCC--GGGTTG--G--GTEEEEEEEESCHHHHHHHHHHHHTC-TTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCceEEEeCCCccH--HHHHHH--H--hhhcceeeccccHHHHHHHHHHHhcC-CCcccchHHHHHHHhcCCCCcchhhH
Confidence 55789999999995 443332 1 23 37999999999999999987542 1
Q ss_pred ---ce--EE-EEecchHHHhc--C--CCCccEEEEeC-------CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 95 ---WV--SE-VIVRQAEEVMG--E--LKGVDFLVVDC-------TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 95 ---~~--I~-li~GdA~evL~--~--L~~fDfVFIDa-------~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
+. |+ ++.+|..+..+ . .++||+|+.=- +.+++...+..+ +.|+|||.++....+
T Consensus 128 ~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 128 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 11 44 89999887433 2 24799999852 234566777644 677999999987654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=82.06 Aligned_cols=93 Identities=5% Similarity=-0.082 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHH----hcCCCeEEEEccCcchHHHHHHHHHhcCC---CCcEEEEEeCCchHHHHHHHHHHhhcCceEE
Q 027409 26 ESGVAELLSAMAA----GWNAKLIVEAWTHGGPITTSIGLAIAARH---TCARHVCIVPDERSRLAYVKAMYDVVGWVSE 98 (223)
Q Consensus 26 ~p~~g~fL~~L~~----~~~ak~ILEIGT~~Gys~Stl~la~A~~~---~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~ 98 (223)
++.+..++..++. .....+|||+|||+|. .++.++..... .+.+++.+|+|++.++.|+.++... |+.++
T Consensus 111 P~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~--~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-g~~~~ 187 (344)
T 2f8l_A 111 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTAN--LLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMT 187 (344)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSH--HHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCE
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccH--HHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-CCCce
Confidence 4455666555553 2245799999999997 55566544321 1278999999999999999999988 88899
Q ss_pred EEecchHHHhcCCCCccEEEEeCC
Q 027409 99 VIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 99 li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
++.||+++... ...||+|+.+.-
T Consensus 188 i~~~D~l~~~~-~~~fD~Ii~NPP 210 (344)
T 2f8l_A 188 LLHQDGLANLL-VDPVDVVISDLP 210 (344)
T ss_dssp EEESCTTSCCC-CCCEEEEEEECC
T ss_pred EEECCCCCccc-cCCccEEEECCC
Confidence 99999987432 247999999843
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=83.69 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=65.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH---hcCC--CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV---MGEL--KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev---L~~L--~~ 113 (223)
.....+||++|||+|. .+++++... + +++|+.+|+|+++++.|+++++.. |..++++.||+.+. ++.+ ..
T Consensus 24 ~~~g~~vLD~g~G~G~--~s~~la~~~-~-~~~VigvD~d~~al~~A~~~~~~~-g~~v~~v~~d~~~l~~~l~~~g~~~ 98 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGG--HSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF-SDRVSLFKVSYREADFLLKTLGIEK 98 (301)
T ss_dssp CCTTCEEEETTCTTSH--HHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG-TTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCCCEEEEEeCCcCH--HHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEECCHHHHHHHHHhcCCCC
Confidence 3455799999999997 777887643 2 689999999999999999999998 83399999998764 3433 47
Q ss_pred ccEEEEeCCC
Q 027409 114 VDFLVVDCTS 123 (223)
Q Consensus 114 fDfVFIDa~K 123 (223)
||.|++|...
T Consensus 99 ~D~Vl~D~gv 108 (301)
T 1m6y_A 99 VDGILMDLGV 108 (301)
T ss_dssp EEEEEEECSC
T ss_pred CCEEEEcCcc
Confidence 9999999853
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=73.71 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=63.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh----------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM---------- 108 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL---------- 108 (223)
....+|||||||+|. .++.++....+.+++|+.+|+++. + ... ++++.||+.+.-
T Consensus 21 ~~~~~vLDlGcG~G~--~~~~l~~~~~~~~~~v~gvD~s~~-----------~-~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 21 KKNKIILDIGCYPGS--WCQVILERTKNYKNKIIGIDKKIM-----------D-PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp CTTEEEEEESCTTCH--HHHHHHHHTTTSCEEEEEEESSCC-----------C-CCTTCEEEECCTTTTSSCCC------
T ss_pred CCCCEEEEeCCCCCH--HHHHHHHHcCCCCceEEEEeCCcc-----------C-CCCCceEEEccccchhhhhhcccccc
Confidence 355799999999998 677776543212689999999984 2 233 789999987642
Q ss_pred -------------cCC--CCccEEEEeCCCcc--------cH------HHHH-HhccCCCceEEEEe
Q 027409 109 -------------GEL--KGVDFLVVDCTSKD--------FA------RVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 109 -------------~~L--~~fDfVFIDa~K~~--------Y~------~~f~-~~~~l~~GgvIV~D 145 (223)
..+ ..||+|+.|..... +. ..+. ..+.|+|||.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 002 37999999975322 11 2444 33677999999984
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.3e-07 Score=85.53 Aligned_cols=75 Identities=19% Similarity=0.012 Sum_probs=64.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHHHhcCC--CCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~evL~~L--~~fD 115 (223)
+.+|-+||+||||.|. .+.+||. .|+.||.||.+++.++.||.+.++. |. .|+++.+++.+..... +.||
T Consensus 64 ~~~~~~vLDvGCG~G~--~~~~la~----~ga~V~giD~~~~~i~~a~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD 136 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGF--FSLSLAS----KGATIVGIDFQQENINVCRALAEEN-PDFAAEFRVGRIEEVIAALEEGEFD 136 (569)
T ss_dssp HTSCCEEEEETCTTSH--HHHHHHH----TTCEEEEEESCHHHHHHHHHHHHTS-TTSEEEEEECCHHHHHHHCCTTSCS
T ss_pred cCCCCeEEEECCCCcH--HHHHHHh----CCCEEEEECCCHHHHHHHHHHHHhc-CCCceEEEECCHHHHhhhccCCCcc
Confidence 4578899999999998 7778874 2789999999999999999999988 85 5999999999987654 4799
Q ss_pred EEEEe
Q 027409 116 FLVVD 120 (223)
Q Consensus 116 fVFID 120 (223)
.|+.=
T Consensus 137 ~v~~~ 141 (569)
T 4azs_A 137 LAIGL 141 (569)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-07 Score=80.28 Aligned_cols=78 Identities=12% Similarity=-0.030 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+.+.+-..+......+|||||||+|+ .|..|+......+++|+.||+|+++++.|++++ . -.++++.||
T Consensus 25 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~--~~v~~i~~D 98 (279)
T 3uzu_A 25 LVDHGVIDAIVAAIRPERGERMVEIGPGLGA--LTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G--ELLELHAGD 98 (279)
T ss_dssp ECCHHHHHHHHHHHCCCTTCEEEEECCTTST--THHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G--GGEEEEESC
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEEccccHH--HHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C--CCcEEEECC
Confidence 6788887777777777778899999999998 777887654322467999999999999999994 2 138999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+++.
T Consensus 99 ~~~~ 102 (279)
T 3uzu_A 99 ALTF 102 (279)
T ss_dssp GGGC
T ss_pred hhcC
Confidence 9984
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=76.49 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=61.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH---------hc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV---------MG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev---------L~ 109 (223)
.+..+|||+|||+|. .++.+|. . +++|+.||+++.. ... ++++.||+.+. ++
T Consensus 24 ~~g~~VLDlG~G~G~--~s~~la~--~--~~~V~gvD~~~~~------------~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 24 RKGDAVIEIGSSPGG--WTQVLNS--L--ARKIISIDLQEME------------EIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp CTTCEEEEESCTTCH--HHHHHTT--T--CSEEEEEESSCCC------------CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCH--HHHHHHH--c--CCcEEEEeccccc------------cCCCeEEEEccccCHHHHHHHHHHhh
Confidence 356899999999997 6666542 2 7899999999862 233 89999998652 11
Q ss_pred --CCCCccEEEEeCCCcc--------------cHHHHHH-hccCCCceEEEEe
Q 027409 110 --ELKGVDFLVVDCTSKD--------------FARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 110 --~L~~fDfVFIDa~K~~--------------Y~~~f~~-~~~l~~GgvIV~D 145 (223)
..++||+|+.|+...- ....++. .+.|+|||.+|+-
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k 138 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK 138 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 0037999999985421 1223332 3677999999964
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=82.62 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=69.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+..+|||||||+|. .+..++... ++.+++.+|. ++... +++.++. ++. |+++.||+.+-++ .||+|
T Consensus 183 ~~~~~vLDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~--~~~~~~~-~~~~~v~~~~~d~~~~~p---~~D~v 251 (348)
T 3lst_A 183 PATGTVADVGGGRGG--FLLTVLREH--PGLQGVLLDR-AEVVA--RHRLDAP-DVAGRWKVVEGDFLREVP---HADVH 251 (348)
T ss_dssp CSSEEEEEETCTTSH--HHHHHHHHC--TTEEEEEEEC-HHHHT--TCCCCCG-GGTTSEEEEECCTTTCCC---CCSEE
T ss_pred cCCceEEEECCccCH--HHHHHHHHC--CCCEEEEecC-HHHhh--ccccccc-CCCCCeEEEecCCCCCCC---CCcEE
Confidence 457899999999998 777777543 4678899999 45444 5555555 665 9999999985555 89999
Q ss_pred EEeCCC-----cccHHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 118 VVDCTS-----KDFARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 118 FIDa~K-----~~Y~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
++-.-- .+...++..+ +.++|||.++. |.++.
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 985432 2335677655 66788887755 44443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=81.69 Aligned_cols=110 Identities=9% Similarity=-0.013 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 26 ESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
+...-.+..+|-+.. ..++||+||||+|+ .|.+|+.. ..++|+.+|+++++++.|.++-.+. +.+-..
T Consensus 67 srg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~--~t~~L~~~---ga~~V~aVDvs~~mL~~a~r~~~rv----~~~~~~ 137 (291)
T 3hp7_A 67 SRGGLKLEKALAVFNLSVEDMITIDIGASTGG--FTDVMLQN---GAKLVYAVDVGTNQLVWKLRQDDRV----RSMEQY 137 (291)
T ss_dssp STTHHHHHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHT---TCSEEEEECSSSSCSCHHHHTCTTE----EEECSC
T ss_pred cchHHHHHHHHHhcCCCccccEEEecCCCccH--HHHHHHhC---CCCEEEEEECCHHHHHHHHHhCccc----ceeccc
Confidence 444445555554442 35799999999998 77777642 2369999999999988764432221 222223
Q ss_pred chHHHhc-CCC--CccEEEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 103 QAEEVMG-ELK--GVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 103 dA~evL~-~L~--~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
++...-. .+. .||+|++|..-......|..+ +.|+|||.+|+
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred CceecchhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEE
Confidence 3322111 232 499999999877778888754 78899998877
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-07 Score=77.81 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=70.3
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
-+++..-.+..+|.... ..++|||||||+|+ .+.+|+.. ...+|+.||+++++++.|+++..+. . ..
T Consensus 17 yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~--~t~~la~~---g~~~V~gvDis~~ml~~a~~~~~~~-~----~~ 86 (232)
T 3opn_A 17 YVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGG--FTDVMLQN---GAKLVYALDVGTNQLAWKIRSDERV-V----VM 86 (232)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHT---TCSEEEEECSSCCCCCHHHHTCTTE-E----EE
T ss_pred ccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCH--HHHHHHhc---CCCEEEEEcCCHHHHHHHHHhCccc-c----cc
Confidence 44544444444444433 34699999999998 77777642 1249999999999999988765543 1 11
Q ss_pred ec-chHHHh-cCCC--CccEEEEeCCCcccHHHHHHh-ccCCCceEEEE
Q 027409 101 VR-QAEEVM-GELK--GVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 101 ~G-dA~evL-~~L~--~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.. +....- ..+. .||++.+|..-.....+|..+ +.|+|||.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 87 EQFNFRNAVLADFEQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CSCCGGGCCGGGCCSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred ccceEEEeCHhHcCcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEE
Confidence 11 111111 1222 266666676655667788755 67899998887
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=78.49 Aligned_cols=103 Identities=7% Similarity=-0.049 Sum_probs=74.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVF 118 (223)
.+.++||+||||.|. .++.++.+. ++.+++-.|. |+.++.|+++++.. +.. |+++.||..+- ....+|+++
T Consensus 178 ~~~~~v~DvGgG~G~--~~~~l~~~~--p~~~~~~~dl-p~v~~~a~~~~~~~-~~~rv~~~~gD~~~~--~~~~~D~~~ 249 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGA--LAKECMSLY--PGCKITVFDI-PEVVWTAKQHFSFQ-EEEQIDFQEGDFFKD--PLPEADLYI 249 (353)
T ss_dssp GGCSEEEEETCTTSH--HHHHHHHHC--SSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--CCCCCSEEE
T ss_pred ccCCeEEeeCCCCCH--HHHHHHHhC--CCceeEeccC-HHHHHHHHHhhhhc-ccCceeeecCccccC--CCCCceEEE
Confidence 467899999999998 777777653 4667777776 89999999999877 766 99999998752 235689999
Q ss_pred EeCCC-----cccHHHHHHh-ccCCCce-EEEEeCCCCC
Q 027409 119 VDCTS-----KDFARVLRFA-RFSNKGA-VLAFKNAFQR 150 (223)
Q Consensus 119 IDa~K-----~~Y~~~f~~~-~~l~~Gg-vIV~DNvl~~ 150 (223)
+=.-- ++-.+.|..+ +.++||| ++|.|.++..
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred eeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 85432 3335667655 4567777 6777777753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.5e-07 Score=74.16 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
...++..+.......+|||||||+|. .+..+ ..+++.+|.+++ . ++++.+|+.+ +
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~--~~~~l-------~~~v~~~D~s~~-----------~----~~~~~~d~~~-~ 109 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCR--LASSI-------RNPVHCFDLASL-----------D----PRVTVCDMAQ-V 109 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCH--HHHHC-------CSCEEEEESSCS-----------S----TTEEESCTTS-C
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCH--HHHHh-------hccEEEEeCCCC-----------C----ceEEEecccc-C
Confidence 44567777666677899999999997 55443 158999999998 2 4778899877 3
Q ss_pred cCC-CCccEEEEeCCC--cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 109 GEL-KGVDFLVVDCTS--KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 109 ~~L-~~fDfVFIDa~K--~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+-- +.||+|+....- .+...+++.+ +.++|||.+++-..
T Consensus 110 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 110 PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp SCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence 322 479999987542 3456677654 66799998887543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=6.9e-07 Score=76.32 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++...+.+-..+......+|||||||+|+ .|..|+.. +++++.+|+|+++++.|+++++.. + .++++.||
T Consensus 13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~--lt~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~-~v~~~~~D 84 (244)
T 1qam_A 13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGH--FTLELVQR----CNFVTAIEIDHKLCKTTENKLVDH-D-NFQVLNKD 84 (244)
T ss_dssp CCCHHHHHHHHTTCCCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTC-C-SEEEECCC
T ss_pred cCCHHHHHHHHHhCCCCCCCEEEEEeCCchH--HHHHHHHc----CCeEEEEECCHHHHHHHHHhhccC-C-CeEEEECh
Confidence 5566666555554555567899999999998 77777754 379999999999999999998754 2 38999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+.+.
T Consensus 85 ~~~~ 88 (244)
T 1qam_A 85 ILQF 88 (244)
T ss_dssp GGGC
T ss_pred HHhC
Confidence 9885
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=83.65 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=75.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhc--------CCCCcEEEEEeCCchHHHHHHHHHHh-------------hc-----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAA--------RHTCARHVCIVPDERSRLAYVKAMYD-------------VV----- 93 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~--------~~~~g~i~TIE~d~e~~~~Ar~~~~~-------------a~----- 93 (223)
.++-+|+|+|.|+||...++|-+... ....-+++|+|.+|-..+..++.++. .+
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 35679999999999965555543210 11124699999977666555543321 11
Q ss_pred C----------ceEEEEecchHHHhcCC-----CCccEEEEeCCCccc------HHHHHHh-ccCCCceEEEEeCC
Q 027409 94 G----------WVSEVIVRQAEEVMGEL-----KGVDFLVVDCTSKDF------ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 94 G----------~~I~li~GdA~evL~~L-----~~fDfVFIDa~K~~Y------~~~f~~~-~~l~~GgvIV~DNv 147 (223)
| +.++++.|||.+.|+++ ..+|.+|+|+-+..+ .++|..+ +++++||.+.....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 212 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA 212 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 1 23889999999999987 369999999988887 8888765 56699999887654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=76.94 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=79.3
Q ss_pred HHHHHH----HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch
Q 027409 30 AELLSA----MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA 104 (223)
Q Consensus 30 g~fL~~----L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA 104 (223)
-.||.- |+.-.+.++||+||||++..+.+..+|... .++++|+-+|.+|.+++.||+.+... +.. ++++.+|.
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~-~P~arVv~VD~sp~mLa~Ar~~l~~~-~~~~~~~v~aD~ 140 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSV-APESRVVYVDNDPIVLTLSQGLLAST-PEGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHH-CTTCEEEEEECCHHHHHTTHHHHCCC-SSSEEEEEECCT
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHhccC-CCCcEEEEEecc
Confidence 455554 443457899999999973211344555333 34789999999999999999999876 544 99999999
Q ss_pred HHH---hcCC---CCcc-----EEEEeCCCccc------HHHHHH-hccCCCceEEEEeCCCC
Q 027409 105 EEV---MGEL---KGVD-----FLVVDCTSKDF------ARVLRF-ARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 105 ~ev---L~~L---~~fD-----fVFIDa~K~~Y------~~~f~~-~~~l~~GgvIV~DNvl~ 149 (223)
.+. |..- ..|| .|++-+--..- ..++.. ...|+|||.++......
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 763 3321 2355 36665532211 346654 46789999999887654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-06 Score=78.60 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=72.4
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--CC---------------------------------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--HT--------------------------------- 68 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~~--------------------------------- 68 (223)
.+.+..++.|-.++...+...||+.+||+|. ..|..|+.+. ++
T Consensus 184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt--~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 261 (393)
T 3k0b_A 184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGT--IPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYD 261 (393)
T ss_dssp SCCHHHHHHHHHHSCCCTTSCEEETTCTTSH--HHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCH--HHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhccc
Confidence 4566666666666666667899999999997 4444443222 11
Q ss_pred -CcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC
Q 027409 69 -CARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 69 -~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
..+|+.+|+|+++++.|++|.+.+ |+. |+++.+|+.+.... ..||+|+.|-
T Consensus 262 ~~~~V~GvDid~~al~~Ar~Na~~~-gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NP 315 (393)
T 3k0b_A 262 QPLNIIGGDIDARLIEIAKQNAVEA-GLGDLITFRQLQVADFQTE-DEYGVVVANP 315 (393)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHT-TCTTCSEEEECCGGGCCCC-CCSCEEEECC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChHhCCCC-CCCCEEEECC
Confidence 257999999999999999999999 987 99999999985432 4799999994
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=76.74 Aligned_cols=106 Identities=14% Similarity=-0.008 Sum_probs=70.8
Q ss_pred CCCeEEEEccCcchHHHHHHH--HHhcCC-C-CcEEEEEeCCchHHHHHHHHHH--------------hhc--------C
Q 027409 41 NAKLIVEAWTHGGPITTSIGL--AIAARH-T-CARHVCIVPDERSRLAYVKAMY--------------DVV--------G 94 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~l--a~A~~~-~-~g~i~TIE~d~e~~~~Ar~~~~--------------~a~--------G 94 (223)
++.+|+++|||+|--+++|++ +..... . +.+|+.+|+|+++++.|+++.. +++ |
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 457999999999964445554 433221 1 3589999999999999998741 100 1
Q ss_pred -c--------eEEEEecchHHH-hcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeC
Q 027409 95 -W--------VSEVIVRQAEEV-MGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 95 -~--------~I~li~GdA~ev-L~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+ .|+|..+|..+. ++..++||+||.=.- ++...+.+..+ +.|+|||+++.-.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1 189999999872 221257999998421 12224556544 5679999998743
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=69.61 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=63.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCC-------CCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE-ecchHHHh--
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARH-------TCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI-VRQAEEVM-- 108 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~-------~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li-~GdA~evL-- 108 (223)
....+|||||||+|+ .++.++..... ++++|+.+|+++.. ... ++++ .+|+.+.-
T Consensus 21 ~~~~~vLDlGcG~G~--~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGA--WSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PLEGATFLCPADVTDPRTS 86 (196)
T ss_dssp CTTCEEEEETCCSCH--HHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CCTTCEEECSCCTTSHHHH
T ss_pred CCCCEEEEeCCCCCH--HHHHHHHHhccccccccCCCceEEEEechhcc------------cCCCCeEEEeccCCCHHHH
Confidence 356799999999998 77777765321 12899999999842 233 7888 89865421
Q ss_pred ----cCC--CCccEEEEeCCCcc---c-----------HHHHHH-hccCCCceEEEEeC
Q 027409 109 ----GEL--KGVDFLVVDCTSKD---F-----------ARVLRF-ARFSNKGAVLAFKN 146 (223)
Q Consensus 109 ----~~L--~~fDfVFIDa~K~~---Y-----------~~~f~~-~~~l~~GgvIV~DN 146 (223)
..+ ..||+|+.|..... . ...++. .+.|+|||.+++-.
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 112 37999999864221 1 355653 46779999998753
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=78.92 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
.+...+++..++...+..+|||+|||+|. .+++++... ..+.+|+.+|+|++.++.| . .++++.||+.
T Consensus 24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~--~~~~~~~~~-~~~~~i~gvDi~~~~~~~a-----~----~~~~~~~D~~ 91 (421)
T 2ih2_A 24 PPEVVDFMVSLAEAPRGGRVLEPACAHGP--FLRAFREAH-GTAYRFVGVEIDPKALDLP-----P----WAEGILADFL 91 (421)
T ss_dssp CHHHHHHHHHHCCCCTTCEEEEETCTTCH--HHHHHHHHH-CSCSEEEEEESCTTTCCCC-----T----TEEEEESCGG
T ss_pred CHHHHHHHHHhhccCCCCEEEECCCCChH--HHHHHHHHh-CCCCeEEEEECCHHHHHhC-----C----CCcEEeCChh
Confidence 45566666665554456799999999997 666665432 2357999999999998777 2 2799999998
Q ss_pred HHhcCCCCccEEEEe
Q 027409 106 EVMGELKGVDFLVVD 120 (223)
Q Consensus 106 evL~~L~~fDfVFID 120 (223)
+..+. +.||+|+.+
T Consensus 92 ~~~~~-~~fD~Ii~N 105 (421)
T 2ih2_A 92 LWEPG-EAFDLILGN 105 (421)
T ss_dssp GCCCS-SCEEEEEEC
T ss_pred hcCcc-CCCCEEEEC
Confidence 75432 479999994
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.3e-06 Score=75.87 Aligned_cols=95 Identities=16% Similarity=0.047 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--C----------------------------------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--H---------------------------------- 67 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~---------------------------------- 67 (223)
.+.+..++.|-.++...+-..||+.+||+|. ..+..|+.+. +
T Consensus 178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt--~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGT--ILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCHHHHHHHHHTSCCCTTSCEEETTCTTCH--HHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCH--HHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 3455555555445444556789999999997 5554443321 1
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeCC
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
...+|+.+|+|+++++.|++|.+.+ |+. |++..+|+.+.... ..||+|+.|--
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~-gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP 310 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIA-GVDEYIEFNVGDATQFKSE-DEFGFIITNPP 310 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCGGGCCCS-CBSCEEEECCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChhhcCcC-CCCcEEEECCC
Confidence 2268999999999999999999999 986 99999999985432 47999999864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-06 Score=73.43 Aligned_cols=107 Identities=7% Similarity=-0.053 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
.|-..+...-.|.+||+||||+|- .++.+ + ++.+++.+|+|+.+.+.+++++... |...++..+|.....+.
T Consensus 95 ~fY~~i~~~~~p~~VLDlGCG~gp--Lal~~----~-~~~~y~a~DId~~~i~~ar~~~~~~-g~~~~~~v~D~~~~~~~ 166 (253)
T 3frh_A 95 TLYDFIFSAETPRRVLDIACGLNP--LALYE----R-GIASVWGCDIHQGLGDVITPFAREK-DWDFTFALQDVLCAPPA 166 (253)
T ss_dssp HHHHHHTSSCCCSEEEEETCTTTH--HHHHH----T-TCSEEEEEESBHHHHHHHHHHHHHT-TCEEEEEECCTTTSCCC
T ss_pred HHHHHHhcCCCCCeEEEecCCccH--HHHHh----c-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCceEEEeecccCCCC
Confidence 344444444679999999999986 44433 2 5789999999999999999999998 97799999998764432
Q ss_pred CCCccEEEEe-C----CCcccHHHHHHhccCCCceEEEEeC
Q 027409 111 LKGVDFLVVD-C----TSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 111 L~~fDfVFID-a----~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
++||.|++= . +..+=...|+.+.-+++++++|+=.
T Consensus 167 -~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 167 -EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp -CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred -CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 389999653 1 0111112335555666777777655
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=74.75 Aligned_cols=89 Identities=16% Similarity=-0.004 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++...+-+...+......+|||||||+|. .|..|+. . ..++++.||+|+++++.++++ . ...++++.||
T Consensus 14 l~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~--lt~~L~~--~-~~~~v~avEid~~~~~~~~~~---~-~~~v~~i~~D 84 (249)
T 3ftd_A 14 LVSEGVLKKIAEELNIEEGNTVVEVGGGTGN--LTKVLLQ--H-PLKKLYVIELDREMVENLKSI---G-DERLEVINED 84 (249)
T ss_dssp EECHHHHHHHHHHTTCCTTCEEEEEESCHHH--HHHHHTT--S-CCSEEEEECCCHHHHHHHTTS---C-CTTEEEECSC
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEEcCchHH--HHHHHHH--c-CCCeEEEEECCHHHHHHHHhc---c-CCCeEEEEcc
Confidence 4566666666555556667899999999997 7777753 2 247999999999999999988 3 3348999999
Q ss_pred hHHH-hcCCCCccEEEEeC
Q 027409 104 AEEV-MGELKGVDFLVVDC 121 (223)
Q Consensus 104 A~ev-L~~L~~fDfVFIDa 121 (223)
+++. ++++.....|+-+-
T Consensus 85 ~~~~~~~~~~~~~~vv~Nl 103 (249)
T 3ftd_A 85 ASKFPFCSLGKELKVVGNL 103 (249)
T ss_dssp TTTCCGGGSCSSEEEEEEC
T ss_pred hhhCChhHccCCcEEEEEC
Confidence 9885 45442222444443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=75.80 Aligned_cols=75 Identities=8% Similarity=-0.087 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
++|...+.+-..+....-.+|||||||+|+ .|. ++.+ ..++|+.+|+|+++++.|+++++.. + .++++.||+
T Consensus 5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~--lt~-l~~~---~~~~v~avEid~~~~~~a~~~~~~~-~-~v~~i~~D~ 76 (252)
T 1qyr_A 5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAA--LTE-PVGE---RLDQLTVIELDRDLAARLQTHPFLG-P-KLTIYQQDA 76 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCTTTT--THH-HHHT---TCSCEEEECCCHHHHHHHHTCTTTG-G-GEEEECSCG
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEECCCCcH--HHH-hhhC---CCCeEEEEECCHHHHHHHHHHhccC-C-ceEEEECch
Confidence 456665555555555566789999999998 666 5421 1234999999999999999988653 2 389999999
Q ss_pred HHH
Q 027409 105 EEV 107 (223)
Q Consensus 105 ~ev 107 (223)
++.
T Consensus 77 ~~~ 79 (252)
T 1qyr_A 77 MTF 79 (252)
T ss_dssp GGC
T ss_pred hhC
Confidence 884
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=7e-07 Score=80.90 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=70.9
Q ss_pred HHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EE-EEecc
Q 027409 30 AELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SE-VIVRQ 103 (223)
Q Consensus 30 g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~-li~Gd 103 (223)
.++...++... ...+|||||||.|+ .+..|+.. +.+++.+|+++++++.|++. |+. .. +..++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~--~~~~l~~~----g~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 161 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGI--MLRTIQEA----GVRHLGFEPSSGVAAKAREK-----GIRVRTDFFEKAT 161 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTT--THHHHHHT----TCEEEEECCCHHHHHHHHTT-----TCCEECSCCSHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCH--HHHHHHHc----CCcEEEECCCHHHHHHHHHc-----CCCcceeeechhh
Confidence 34444444444 45699999999998 66666542 56999999999999998875 333 22 23344
Q ss_pred hHHHhcC-CCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEe
Q 027409 104 AEEVMGE-LKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 104 A~evL~~-L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+ +.++. -+.||+|+.-..-+ +...+|..+ +.|+|||+++..
T Consensus 162 ~-~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 162 A-DDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp H-HHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-hhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 4 33432 15899999886543 345667654 677999999986
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=73.90 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--C----------------------------------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--H---------------------------------- 67 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~---------------------------------- 67 (223)
.+.+..++.|-.++.-.+-..+|+.+||+|. ..|..|+.+. +
T Consensus 177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt--~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGT--FCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp CCCHHHHHHHHHHTTCCTTSCEEETTCTTSH--HHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCH--HHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 4555666666556555666899999999997 4444433222 1
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEe
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFID 120 (223)
...+|+.+|+|+++++.|++|.+.+ |+. |+++.+|+.+.... ..||+|+.|
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~-gl~~~I~~~~~D~~~l~~~-~~fD~Iv~N 307 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREV-GLEDVVKLKQMRLQDFKTN-KINGVLISN 307 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCGGGCCCC-CCSCEEEEC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChHHCCcc-CCcCEEEEC
Confidence 1257999999999999999999999 987 99999999985432 479999999
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-06 Score=74.04 Aligned_cols=118 Identities=8% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 28 GVAELLSAMAAG-WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 28 ~~g~fL~~L~~~-~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
.--.|...+... -.|.+||+||||.|- .++.++ ...+..+++.+|+|+.+.+.+++|+... |+..++...|-..
T Consensus 118 ~lD~fY~~i~~~i~~p~~VLDLGCG~Gp--LAl~~~--~~~p~a~y~a~DId~~~le~a~~~l~~~-g~~~~~~v~D~~~ 192 (281)
T 3lcv_B 118 HLDEFYRELFRHLPRPNTLRDLACGLNP--LAAPWM--GLPAETVYIASDIDARLVGFVDEALTRL-NVPHRTNVADLLE 192 (281)
T ss_dssp GHHHHHHHHGGGSCCCSEEEETTCTTGG--GCCTTT--TCCTTCEEEEEESBHHHHHHHHHHHHHT-TCCEEEEECCTTT
T ss_pred hHHHHHHHHHhccCCCceeeeeccCccH--HHHHHH--hhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEeeecc
Confidence 344555555544 459999999999997 554443 2346789999999999999999999999 9998888888765
Q ss_pred HhcCCCCccEEEEeCC-----CcccHHHHHHhccCCCceEEEEeCC--CCCC
Q 027409 107 VMGELKGVDFLVVDCT-----SKDFARVLRFARFSNKGAVLAFKNA--FQRS 151 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~-----K~~Y~~~f~~~~~l~~GgvIV~DNv--l~~g 151 (223)
..+. .+||++++==- .++=..-|+++.-+++||++|.=.. +.+.
T Consensus 193 ~~p~-~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Gr 243 (281)
T 3lcv_B 193 DRLD-EPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQR 243 (281)
T ss_dssp SCCC-SCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-----
T ss_pred cCCC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCC
Confidence 4332 47999976311 1111233456666788888887666 5443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=75.40 Aligned_cols=96 Identities=8% Similarity=-0.022 Sum_probs=68.0
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..+..+|||||||+|. .+..++... ++.+++.+|+ +++++.|+++ . + |+++.||+.+-++ .||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~---~-~--v~~~~~d~~~~~p---~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGT--TAKIICETF--PKLKCIVFDR-PQVVENLSGS---N-N--LTYVGGDMFTSIP---NADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHTTCCCB---T-T--EEEEECCTTTCCC---CCSEEE
T ss_pred cccCceEEEeCCCccH--HHHHHHHHC--CCCeEEEeeC-HHHHhhcccC---C-C--cEEEeccccCCCC---CccEEE
Confidence 3467899999999998 677776543 4679999999 9888777651 2 2 8999999977433 499999
Q ss_pred EeCCCc-----ccHHHHHHh-ccCCC---ceEE-EEeCCC
Q 027409 119 VDCTSK-----DFARVLRFA-RFSNK---GAVL-AFKNAF 148 (223)
Q Consensus 119 IDa~K~-----~Y~~~f~~~-~~l~~---GgvI-V~DNvl 148 (223)
+-.--. ....++..+ +.++| ||.+ |.|.++
T Consensus 252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 854322 233667655 55677 8855 555554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.1e-07 Score=78.33 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=63.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-HH--hhcCceEEEE--ecchHHHhcCCCCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-MY--DVVGWVSEVI--VRQAEEVMGELKGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~~--~a~G~~I~li--~GdA~evL~~L~~fD 115 (223)
.-++||++|||+|. .+..+|. . ++|+.||+++ +...|++. .. .. |..|+++ .||+.+ |+ -++||
T Consensus 82 ~g~~VLDlGcGtG~--~s~~la~--~---~~V~gVD~s~-m~~~a~~~~~~~~~~-~~~v~~~~~~~D~~~-l~-~~~fD 150 (276)
T 2wa2_A 82 LKGTVVDLGCGRGS--WSYYAAS--Q---PNVREVKAYT-LGTSGHEKPRLVETF-GWNLITFKSKVDVTK-ME-PFQAD 150 (276)
T ss_dssp CCEEEEEESCTTCH--HHHHHHT--S---TTEEEEEEEC-CCCTTSCCCCCCCCT-TGGGEEEECSCCGGG-CC-CCCCS
T ss_pred CCCEEEEeccCCCH--HHHHHHH--c---CCEEEEECch-hhhhhhhchhhhhhc-CCCeEEEeccCcHhh-CC-CCCcC
Confidence 34689999999997 6666652 2 7899999998 43333322 11 12 3348899 999887 44 24799
Q ss_pred EEEEeCCCcc--------c--HHHHHHh-ccCCCce--EEEEeC
Q 027409 116 FLVVDCTSKD--------F--ARVLRFA-RFSNKGA--VLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~--------Y--~~~f~~~-~~l~~Gg--vIV~DN 146 (223)
+|+.|.. .. + ...++.+ +.|+||| .++++.
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 9999976 11 1 1245544 6679999 877753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.5e-07 Score=77.31 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCcHHHHHHHHHHHH--hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH-H--HhhcCceEE
Q 027409 24 IKESGVAELLSAMAA--GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA-M--YDVVGWVSE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~--~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~-~--~~a~G~~I~ 98 (223)
-++...-.+..++-+ ....++||++|||+|. .+..+|. . ++|+.||+++ +...|++. . +.. |..|+
T Consensus 55 ~~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~--~s~~la~--~---~~V~gvD~s~-m~~~a~~~~~~~~~~-~~~v~ 125 (265)
T 2oxt_A 55 SVSRGTAKLAWMEERGYVELTGRVVDLGCGRGG--WSYYAAS--R---PHVMDVRAYT-LGVGGHEVPRITESY-GWNIV 125 (265)
T ss_dssp CSSTHHHHHHHHHHHTSCCCCEEEEEESCTTSH--HHHHHHT--S---TTEEEEEEEC-CCCSSCCCCCCCCBT-TGGGE
T ss_pred ccchHHHHHHHHHHcCCCCCCCEEEEeCcCCCH--HHHHHHH--c---CcEEEEECch-hhhhhhhhhhhhhcc-CCCeE
Confidence 345544444444443 2234689999999996 6656542 2 7899999998 43333221 1 122 33478
Q ss_pred EE--ecchHHHhcCCCCccEEEEeCCCcc---c----H---HHHHHh-ccCCCce--EEEEeC
Q 027409 99 VI--VRQAEEVMGELKGVDFLVVDCTSKD---F----A---RVLRFA-RFSNKGA--VLAFKN 146 (223)
Q Consensus 99 li--~GdA~evL~~L~~fDfVFIDa~K~~---Y----~---~~f~~~-~~l~~Gg--vIV~DN 146 (223)
++ .||+.+ |+ -+.||+|+.|.. .. + . ..++.+ +.|+||| .++++-
T Consensus 126 ~~~~~~D~~~-l~-~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 126 KFKSRVDIHT-LP-VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EEECSCCTTT-SC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEecccCHhH-CC-CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 99 999887 34 247999999976 21 1 1 255544 6679999 888754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.4e-06 Score=73.12 Aligned_cols=91 Identities=13% Similarity=0.015 Sum_probs=60.6
Q ss_pred cCCCeEEEEccCcch---HHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE-EecchHHHhcCCCCcc
Q 027409 40 WNAKLIVEAWTHGGP---ITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV-IVRQAEEVMGELKGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gy---s~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l-i~GdA~evL~~L~~fD 115 (223)
....+|||+|||.|+ .++ ..++. ..+++++|+.+|++++ + . + +++ +.||+.+. +--+.||
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~-~~~~~~~V~gvDis~~--------v--~-~--v~~~i~gD~~~~-~~~~~fD 125 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT-AVLRQ-WLPTGTLLVDSDLNDF--------V--S-D--ADSTLIGDCATV-HTANKWD 125 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH-HHHHH-HSCTTCEEEEEESSCC--------B--C-S--SSEEEESCGGGC-CCSSCEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH-HHHHH-HcCCCCEEEEEECCCC--------C--C-C--CEEEEECccccC-CccCccc
Confidence 345699999995521 123 23332 2445789999999998 1 2 2 577 99999873 2115799
Q ss_pred EEEEeCCCc--------------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTSK--------------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~--------------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+.|.... .+.+.++.+ +.|+|||.+++.-
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999986532 133566644 6789999999864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.7e-06 Score=74.11 Aligned_cols=95 Identities=6% Similarity=-0.035 Sum_probs=67.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+..+|||||||+|. .+..++... ++.+++.+|+ +++++.|+++ . + |+++.||+.+-++ .||+|++
T Consensus 208 ~~~~~vLDvG~G~G~--~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~---~-~--v~~~~~d~~~~~~---~~D~v~~ 273 (372)
T 1fp1_D 208 EGISTLVDVGGGSGR--NLELIISKY--PLIKGINFDL-PQVIENAPPL---S-G--IEHVGGDMFASVP---QGDAMIL 273 (372)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC---T-T--EEEEECCTTTCCC---CEEEEEE
T ss_pred CCCCEEEEeCCCCcH--HHHHHHHHC--CCCeEEEeCh-HHHHHhhhhc---C-C--CEEEeCCcccCCC---CCCEEEE
Confidence 357899999999998 677777543 4678999999 8888776641 1 1 8999999987333 4999998
Q ss_pred eCCCccc-----HHHHHHh-ccCCCceEEEE-eCCC
Q 027409 120 DCTSKDF-----ARVLRFA-RFSNKGAVLAF-KNAF 148 (223)
Q Consensus 120 Da~K~~Y-----~~~f~~~-~~l~~GgvIV~-DNvl 148 (223)
-.--.+. ..++..+ +.++|||.++. |.++
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 6543322 3666654 56788886654 4443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=4e-05 Score=68.89 Aligned_cols=106 Identities=11% Similarity=-0.013 Sum_probs=68.4
Q ss_pred cCCCeEEEEccCcchHHHHHHH-HHhcCCCCcE--EEEEeCCch---------HHHHHHHHHHhh---cC--ceEEEEec
Q 027409 40 WNAKLIVEAWTHGGPITTSIGL-AIAARHTCAR--HVCIVPDER---------SRLAYVKAMYDV---VG--WVSEVIVR 102 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~l-a~A~~~~~g~--i~TIE~d~e---------~~~~Ar~~~~~a---~G--~~I~li~G 102 (223)
...=+|||+|-|+|+...+.|. +... .+..+ .+++|.++- ..+.+...+... -+ +..++..|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~-~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEV-NPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHH-CTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHh-CCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 3445799999999996443332 2222 33455 577886431 233344444432 01 12788999
Q ss_pred chHHHhcCCC--CccEEEEeCC-C----ccc-HHHHHHh-ccCCCceEEEEeC
Q 027409 103 QAEEVMGELK--GVDFLVVDCT-S----KDF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 103 dA~evL~~L~--~fDfVFIDa~-K----~~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
||.+.|+++. .||.+|.|+- + +.+ .++|..+ +.++|||++++--
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt 226 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS 226 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe
Confidence 9999999984 6999999983 2 233 5677655 5679999998743
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.8e-06 Score=75.43 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHHH-hcCC-CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC----CchHHHHHHHHHHhhcCce-E
Q 027409 25 KESGVAELLSAMAA-GWNA-KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP----DERSRLAYVKAMYDVVGWV-S 97 (223)
Q Consensus 25 i~p~~g~fL~~L~~-~~~a-k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~----d~e~~~~Ar~~~~~a~G~~-I 97 (223)
.+...-.++.++-+ ..+| ++||++|||.|. .|..+|. . |+|+.+|. .+.+.+.+ ..+.. |.. |
T Consensus 64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~--~s~~la~--~---~~V~gvD~~~~~~~~~~~~~--~~~~~-~~~~v 133 (305)
T 2p41_A 64 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGG--WSYYCGG--L---KNVREVKGLTKGGPGHEEPI--PMSTY-GWNLV 133 (305)
T ss_dssp SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSH--HHHHHHT--S---TTEEEEEEECCCSTTSCCCC--CCCST-TGGGE
T ss_pred cccHHHHHHHHHHcCCCCCCCEEEEEcCCCCH--HHHHHHh--c---CCEEEEeccccCchhHHHHH--Hhhhc-CCCCe
Confidence 44444455544443 2243 799999999997 6666653 2 68999998 44332111 11233 445 9
Q ss_pred EEEec-chHHHhcCCCCccEEEEeCCCc--cc----H---HHHHHh-ccCCCceEEEEe
Q 027409 98 EVIVR-QAEEVMGELKGVDFLVVDCTSK--DF----A---RVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~G-dA~evL~~L~~fDfVFIDa~K~--~Y----~---~~f~~~-~~l~~GgvIV~D 145 (223)
+++.| |+.+. + ..+||+|+.|+.-. ++ . ..|..+ +.|+|||.++++
T Consensus 134 ~~~~~~D~~~l-~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 134 RLQSGVDVFFI-P-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp EEECSCCTTTS-C-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEeccccccC-C-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999 88763 2 24799999998642 21 1 345444 678999999985
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6.6e-06 Score=73.21 Aligned_cols=96 Identities=6% Similarity=-0.003 Sum_probs=67.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+..+|||||||+|. .+..++... ++.+++.+|. ++.++.|++. . + |+++.||..+- +..||+|++
T Consensus 192 ~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~---~-~--v~~~~~d~~~~---~~~~D~v~~ 257 (358)
T 1zg3_A 192 EGLESLVDVGGGTGG--VTKLIHEIF--PHLKCTVFDQ-PQVVGNLTGN---E-N--LNFVGGDMFKS---IPSADAVLL 257 (358)
T ss_dssp HTCSEEEEETCTTSH--HHHHHHHHC--TTSEEEEEEC-HHHHSSCCCC---S-S--EEEEECCTTTC---CCCCSEEEE
T ss_pred cCCCEEEEECCCcCH--HHHHHHHHC--CCCeEEEecc-HHHHhhcccC---C-C--cEEEeCccCCC---CCCceEEEE
Confidence 467899999999998 677776543 4678999999 7777666541 2 2 89999999873 335999998
Q ss_pred eCCCcc-----cHHHHHHh-ccCCC---ce-EEEEeCCCC
Q 027409 120 DCTSKD-----FARVLRFA-RFSNK---GA-VLAFKNAFQ 149 (223)
Q Consensus 120 Da~K~~-----Y~~~f~~~-~~l~~---Gg-vIV~DNvl~ 149 (223)
-.--.+ ...++..+ +.++| || ++|.|.++.
T Consensus 258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 643322 34666655 56787 88 555565543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=72.86 Aligned_cols=96 Identities=8% Similarity=-0.039 Sum_probs=67.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+.++|||||||+|. .++.++... ++.+++.+|+ |+.++.|+++ -.|+++.||..+-++ +. |+|++
T Consensus 202 ~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~p--~~-D~v~~ 267 (368)
T 3reo_A 202 EGLTTIVDVGGGTGA--VASMIVAKY--PSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFDGVP--KG-DAIFI 267 (368)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTCCC--CC-SEEEE
T ss_pred cCCCEEEEeCCCcCH--HHHHHHHhC--CCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCCCCC--CC-CEEEE
Confidence 346899999999998 777777543 4678999999 8877666532 128999999987444 24 99998
Q ss_pred eCCCc-----ccHHHHHHh-ccCCCceEE-EEeCCCC
Q 027409 120 DCTSK-----DFARVLRFA-RFSNKGAVL-AFKNAFQ 149 (223)
Q Consensus 120 Da~K~-----~Y~~~f~~~-~~l~~GgvI-V~DNvl~ 149 (223)
-.--. +..+++..+ +.|+|||.+ |.|.++.
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 65433 334667655 567888855 5555554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.97 E-value=9.8e-06 Score=74.88 Aligned_cols=123 Identities=9% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCC-----------CCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARH-----------TCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~-----------~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
.++++.++|.-++......+||+.|||+|. ..+.++..... ....++.+|+|+..++.|+.|+...
T Consensus 155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~--fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~- 231 (445)
T 2okc_A 155 TPRPLIQAMVDCINPQMGETVCDPACGTGG--FLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH- 231 (445)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTCH--HHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT-
T ss_pred CcHHHHHHHHHHhCCCCCCEEeccCCCcch--HHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh-
Confidence 345567776666655555699999999996 55555433211 2357999999999999999999887
Q ss_pred Cc---eEEEEecchHHHhcCCCCccEEEEeCC------------Ccc--------cHHHHHH-hccCCCceEE---EEeC
Q 027409 94 GW---VSEVIVRQAEEVMGELKGVDFLVVDCT------------SKD--------FARVLRF-ARFSNKGAVL---AFKN 146 (223)
Q Consensus 94 G~---~I~li~GdA~evL~~L~~fDfVFIDa~------------K~~--------Y~~~f~~-~~~l~~GgvI---V~DN 146 (223)
|+ .++++.||++..... ..||+|+.+-- +.. +..+++. ++.|++||.+ +.++
T Consensus 232 g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 232 GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 87 488999999874322 47999998621 111 1356664 4667888754 4566
Q ss_pred CCCCC
Q 027409 147 AFQRS 151 (223)
Q Consensus 147 vl~~g 151 (223)
+++++
T Consensus 311 ~L~~~ 315 (445)
T 2okc_A 311 VLFEA 315 (445)
T ss_dssp HHHCS
T ss_pred ccccC
Confidence 77655
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=77.43 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcC--C----------------------------------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAAR--H---------------------------------- 67 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~--~---------------------------------- 67 (223)
.+.+..++.|-.++.-.....||+.+||+|. ..|..|+.+. +
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt--~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~ 250 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGT--LLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK 250 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSH--HHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcH--HHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhh
Confidence 4556666666555555566799999999997 4444433221 1
Q ss_pred ----CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C-CccEEEEe
Q 027409 68 ----TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K-GVDFLVVD 120 (223)
Q Consensus 68 ----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~-~fDfVFID 120 (223)
+..+|+.+|+|+++++.|+.|.+.+ |+. |+|..||+.+..+.. . .||+|+.+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~a-gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 251 GLAEYSSHFYGSDSDARVIQRARTNARLA-GIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp HHHHCCCCEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred ccccCCccEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 2368999999999999999999999 998 999999999954433 2 79999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=71.53 Aligned_cols=96 Identities=9% Similarity=-0.047 Sum_probs=67.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+..+|||||||+|. .+..++.+. ++.+++-+|. |+.++.|+++ -.|+++.||..+-++ +. |+|++
T Consensus 200 ~~~~~vlDvG~G~G~--~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~~-D~v~~ 265 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGA--TVAAIAAHY--PTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFKEVP--SG-DTILM 265 (364)
T ss_dssp TTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTCCC--CC-SEEEE
T ss_pred cCCCEEEEeCCCCCH--HHHHHHHHC--CCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCCCCC--CC-CEEEe
Confidence 357899999999998 677777543 4678999999 8776665531 128999999987444 24 99998
Q ss_pred eCCC-----cccHHHHHHh-ccCCCceEE-EEeCCCC
Q 027409 120 DCTS-----KDFARVLRFA-RFSNKGAVL-AFKNAFQ 149 (223)
Q Consensus 120 Da~K-----~~Y~~~f~~~-~~l~~GgvI-V~DNvl~ 149 (223)
-.-- ++...++..+ +.++|||.+ |.|.++.
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 6543 3345667655 567888855 5555554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-06 Score=74.18 Aligned_cols=88 Identities=11% Similarity=-0.042 Sum_probs=62.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++...+.+...+......+|||||||+|. .++.++.. +++++.||+|+++++.|+++++ . ...++++.||
T Consensus 12 l~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~--~~~~l~~~----~~~v~~id~~~~~~~~a~~~~~-~-~~~v~~~~~D 83 (245)
T 1yub_A 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGH--LTTKLAKI----SKQVTSIELDSHLFNLSSEKLK-L-NTRVTLIHQD 83 (245)
T ss_dssp CCCTTTHHHHHHHCCCCSSEEEEECSCCCSS--CSHHHHHH----SSEEEESSSSCSSSSSSSCTTT-T-CSEEEECCSC
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEEeCCCCH--HHHHHHHh----CCeEEEEECCHHHHHHHHHHhc-c-CCceEEEECC
Confidence 4455555555444555566799999999998 77777653 3799999999999999998876 2 2239999999
Q ss_pred hHHHhcCC-CCccEEEEe
Q 027409 104 AEEVMGEL-KGVDFLVVD 120 (223)
Q Consensus 104 A~evL~~L-~~fDfVFID 120 (223)
+.+.-... ++| .|+.+
T Consensus 84 ~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 84 ILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp CTTTTCCCSSEE-EEEEE
T ss_pred hhhcCcccCCCc-EEEEe
Confidence 98752111 357 55554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=8.2e-05 Score=72.74 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCC--CcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHT--CARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~--~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fD 115 (223)
+.+.||.||||.|- -+..++. |+... .-+|+.||.|| ++..|++..++- |+. |+++.||..++ ++ +++|
T Consensus 357 ~~~vVldVGaGrGp-Lv~~al~-A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-~~~dkVtVI~gd~eev--~LPEKVD 430 (637)
T 4gqb_A 357 NVQVLMVLGAGRGP-LVNASLR-AAKQADRRIKLYAVEKNP-NAVVTLENWQFE-EWGSQVTVVSSDMREW--VAPEKAD 430 (637)
T ss_dssp CEEEEEEESCTTSH-HHHHHHH-HHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-TTGGGEEEEESCTTTC--CCSSCEE
T ss_pred CCcEEEEECCCCcH-HHHHHHH-HHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-cCCCeEEEEeCcceec--cCCcccC
Confidence 44679999999995 3333333 33222 23789999997 688999999988 877 99999999885 33 4899
Q ss_pred EEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|.-.- .-|.-++++.+. +.|+|||+++=+.
T Consensus 431 IIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs~ 467 (637)
T 4gqb_A 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGE 467 (637)
T ss_dssp EEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESCE
T ss_pred EEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcccc
Confidence 997541 122335555554 5679999987443
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=69.28 Aligned_cols=123 Identities=6% Similarity=-0.033 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC----------------CcEEEEEeCCchHHHHHHHHH
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT----------------CARHVCIVPDERSRLAYVKAM 89 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~----------------~g~i~TIE~d~e~~~~Ar~~~ 89 (223)
++.+.++|.-++....-.+||+.+||+|. ..+.++...... ...++.+|+|+..++.|+.|+
T Consensus 154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~--fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl 231 (541)
T 2ar0_A 154 PRPLIKTIIHLLKPQPREVVQDPAAGTAG--FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 231 (541)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTH--HHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCeEecCCcccch--HHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHH
Confidence 34466666555544444699999999995 444444332211 137999999999999999999
Q ss_pred HhhcCce------EEEEecchHHHhc-CCCCccEEEEeCC-----------------CcccHHHHHH-hccCCCceE---
Q 027409 90 YDVVGWV------SEVIVRQAEEVMG-ELKGVDFLVVDCT-----------------SKDFARVLRF-ARFSNKGAV--- 141 (223)
Q Consensus 90 ~~a~G~~------I~li~GdA~evL~-~L~~fDfVFIDa~-----------------K~~Y~~~f~~-~~~l~~Ggv--- 141 (223)
.-. |+. ++++.||++..-. ....||+|+.+-- ...+..+++. ++.|++||.
T Consensus 232 ~l~-gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 232 LLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp HTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHh-CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 877 765 6899999987532 3458999998731 1112356664 466777763
Q ss_pred EEEeCCCCCC
Q 027409 142 LAFKNAFQRS 151 (223)
Q Consensus 142 IV~DNvl~~g 151 (223)
|+.+.+|+++
T Consensus 311 V~p~~~L~~~ 320 (541)
T 2ar0_A 311 VVPDNVLFEG 320 (541)
T ss_dssp EEEHHHHHCC
T ss_pred EecCcceecC
Confidence 4455567655
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=69.13 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=69.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhc----CC--CC--cEEEEEeC---CchHHHHHHH-----------HHHhh----cC--
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAA----RH--TC--ARHVCIVP---DERSRLAYVK-----------AMYDV----VG-- 94 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~----~~--~~--g~i~TIE~---d~e~~~~Ar~-----------~~~~a----~G-- 94 (223)
=+|||+|-|+||...+.|.+... .+ +. =+++++|. +++.+..|-. ..+.. -|
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 48999999999976665554211 11 12 35899999 5554443332 22111 01
Q ss_pred --------ceEEEEecchHHHhcCC-----CCccEEEEeCC-----Cccc-HHHHHHh-ccCCCceEEEEeCC
Q 027409 95 --------WVSEVIVRQAEEVMGEL-----KGVDFLVVDCT-----SKDF-ARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 95 --------~~I~li~GdA~evL~~L-----~~fDfVFIDa~-----K~~Y-~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.+++..|||.+.|+++ ..||.+|+|+- .+.+ .++|..+ +.+++||.+..-..
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 220 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS 220 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 23789999999999987 36999999983 3444 5666654 56699999987764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=65.16 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-------EEEEec
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-------SEVIVR 102 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-------I~li~G 102 (223)
..+-..++....-.+||++-+|-|= =|+.||. ...+|.|+++|+++.++...++|+++. |.. |++...
T Consensus 137 S~l~~~~L~~~pg~~VLD~CAaPGG--KT~~la~--~~~~~~l~A~D~~~~R~~~l~~~l~r~-~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 137 SLLPVLALGLQPGDIVLDLCAAPGG--KTLALLQ--TGCCRNLAANDLSPSRIARLQKILHSY-VPEEIRDGNQVRVTSW 211 (359)
T ss_dssp GHHHHHHHCCCTTEEEEESSCTTCH--HHHHHHH--TTCEEEEEEECSCHHHHHHHHHHHHHH-SCTTTTTSSSEEEECC
T ss_pred HHHHHHHhCCCCCCEEEEecCCccH--HHHHHHH--hcCCCcEEEEcCCHHHHHHHHHHHHHh-hhhhhccCCceEEEeC
Confidence 3333333333344589999777773 6667764 334689999999999999999999998 752 899999
Q ss_pred chHHHhcCC-CCccEEEEeCC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~ 122 (223)
||...-+.. +.||-|++||-
T Consensus 212 D~~~~~~~~~~~fD~VLlDaP 232 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVP 232 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECC
T ss_pred chhhcchhccccCCEEEECCc
Confidence 998754433 47999999975
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=65.56 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
..+....+++++-. .++..+|++=.|+| +++..+.+.+.+++-+|.+++..+.-++|++.. -+++++.+|+
T Consensus 76 ~p~~l~~yf~~l~~-~n~~~~LDlfaGSG------aLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~ 146 (283)
T 2oo3_A 76 LPSLFLEYISVIKQ-INLNSTLSYYPGSP------YFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDG 146 (283)
T ss_dssp SCGGGHHHHHHHHH-HSSSSSCCEEECHH------HHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCH
T ss_pred CcHHHHHHHHHHHH-hcCCCceeEeCCcH------HHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcH
Confidence 34445678887777 46777877744433 233333344579999999999999999999763 2389999999
Q ss_pred HHHhcCC----CCccEEEEeC--C-CcccHHHHHHhc---cCCCceEEE-EeCCCCC
Q 027409 105 EEVMGEL----KGVDFLVVDC--T-SKDFARVLRFAR---FSNKGAVLA-FKNAFQR 150 (223)
Q Consensus 105 ~evL~~L----~~fDfVFIDa--~-K~~Y~~~f~~~~---~l~~GgvIV-~DNvl~~ 150 (223)
.+.|..+ .+||+||||- . |..|.+.++.+. .+.++|+++ =--++.+
T Consensus 147 ~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 147 VSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp HHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred HHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 9988754 2699999997 3 578888888662 345555554 4444433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=70.27 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCC-----------CCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARH-----------TCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV- 107 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~-----------~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev- 107 (223)
.+.||+||||+|. -|..++. |+.. ...+|+.||.|+......+...+ - |+. |+++.||..++
T Consensus 410 ~~VVldVGaGtGp-Ls~~al~-A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-N-g~~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGP-IGTKILK-SEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-R-TWKRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCH-HHHHHHH-HHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-H-TTTTCSEEEESCGGGHH
T ss_pred CcEEEEECCCCCH-HHHHHHH-HHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-c-CCCCeEEEEeCchhhcc
Confidence 5689999999996 3322222 2211 23599999999865544444433 4 555 99999999986
Q ss_pred hc----CCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 108 MG----ELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 108 L~----~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
++ ..++.|+|.--- +-+.++++++.+ +.|+|||+++=+.
T Consensus 486 lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~ 534 (745)
T 3ua3_A 486 GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQK 534 (745)
T ss_dssp HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCE
T ss_pred cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCc
Confidence 42 125799997542 345667888866 5679999987443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=62.26 Aligned_cols=94 Identities=11% Similarity=-0.059 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHh----cCCCeEEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHHHHHHHhhcCc--e
Q 027409 24 IKESGVAELLSAMAAG----WNAKLIVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAYVKAMYDVVGW--V 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----~~ak~ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~ 96 (223)
--++++.++|.-++.. ....+|++.+||+|- ..+.++.... .....++.+|+|+..+..|+.|+.-. |+ .
T Consensus 200 yTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~--fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-gi~~~ 276 (542)
T 3lkd_A 200 YTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGS--LLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH-GVPIE 276 (542)
T ss_dssp CCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTST--TGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT-TCCGG
T ss_pred cccHHHHHHHHHHHhcccCCCCCCEEeecccchhH--HHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc-CCCcC
Confidence 3466688888888873 355699999999995 4444443332 23568999999999999999999888 88 4
Q ss_pred -EEEEecchHHHh-cC--CCCccEEEEe
Q 027409 97 -SEVIVRQAEEVM-GE--LKGVDFLVVD 120 (223)
Q Consensus 97 -I~li~GdA~evL-~~--L~~fDfVFID 120 (223)
++++.||+++.- +. ...||+|+-.
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaN 304 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMN 304 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEEC
T ss_pred ccceEecceecccccccccccccEEEec
Confidence 899999998751 22 2479999954
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=58.21 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=60.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc---CCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG---ELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~---~L~~fDfV 117 (223)
.-.+||+|||+. +++|.++++++.|++.+... ++++.+|+.+.-. .-+.||+|
T Consensus 12 ~g~~vL~~~~g~--------------------v~vD~s~~ml~~a~~~~~~~----~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 12 AGQFVAVVWDKS--------------------SPVEALKGLVDKLQALTGNE----GRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTSEEEEEECTT--------------------SCHHHHHHHHHHHHHHTTTT----SEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCEEEEecCCc--------------------eeeeCCHHHHHHHHHhcccC----cEEEEechhcCccccCCCCCEeEE
Confidence 447899998862 23899999999999876443 7999999987533 22479999
Q ss_pred EEeCCC----cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 118 VVDCTS----KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K----~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
+.-..- .+...+|..+ +.|+|||.+++.+-
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 973221 3457778655 67899999998553
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00091 Score=59.51 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=61.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH---hcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV---MGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev---L~~L--~~f 114 (223)
.....+|+.+||.|- -|..++.. +|+|+.+|.||+.++.|++ ++. -.++++.++..++ |.++ +++
T Consensus 21 ~~gg~~VD~T~G~GG--HS~~il~~----~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 21 RPGGVYVDATLGGAG--HARGILER----GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp CTTCEEEETTCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCEEEEeCCCCcH--HHHHHHHC----CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCc
Confidence 445789999999985 66677653 7899999999999999999 644 1389999999775 6554 479
Q ss_pred cEEEEeCCCcccH
Q 027409 115 DFLVVDCTSKDFA 127 (223)
Q Consensus 115 DfVFIDa~K~~Y~ 127 (223)
|.|+.|-.-+.+.
T Consensus 91 DgIL~DLGvSS~Q 103 (285)
T 1wg8_A 91 DGILADLGVSSFH 103 (285)
T ss_dssp EEEEEECSCCHHH
T ss_pred CEEEeCCcccccc
Confidence 9999997655554
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=51.99 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=57.8
Q ss_pred HHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CC
Q 027409 36 MAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 36 L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~ 113 (223)
+.+-.+ +.+|||||||.|+ .-+.+||. ..+-.|+.+|++|...+ ++.+|..+-..++ ++
T Consensus 29 I~~~~~~~~rVlEVG~G~g~-~vA~~La~---~~g~~V~atDInp~Av~---------------~v~dDiF~P~~~~Y~~ 89 (153)
T 2k4m_A 29 IIRCSGPGTRVVEVGAGRFL-YVSDYIRK---HSKVDLVLTDIKPSHGG---------------IVRDDITSPRMEIYRG 89 (153)
T ss_dssp HHHHSCSSSEEEEETCTTCC-HHHHHHHH---HSCCEEEEECSSCSSTT---------------EECCCSSSCCHHHHTT
T ss_pred HHhcCCCCCcEEEEccCCCh-HHHHHHHH---hCCCeEEEEECCccccc---------------eEEccCCCCcccccCC
Confidence 344444 5699999999994 14556653 13567999999998544 5667776622222 58
Q ss_pred ccEE-EEeCCCcccHHHHHHhccC
Q 027409 114 VDFL-VVDCTSKDFARVLRFARFS 136 (223)
Q Consensus 114 fDfV-FIDa~K~~Y~~~f~~~~~l 136 (223)
||+| -|-.-.+..+..+++.+..
T Consensus 90 ~DLIYsirPP~El~~~i~~lA~~v 113 (153)
T 2k4m_A 90 AALIYSIRPPAEIHSSLMRVADAV 113 (153)
T ss_dssp EEEEEEESCCTTTHHHHHHHHHHH
T ss_pred cCEEEEcCCCHHHHHHHHHHHHHc
Confidence 9999 8888888888888877554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0058 Score=61.54 Aligned_cols=95 Identities=6% Similarity=-0.034 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHHHHhc------CCCeEEEEccCcchHHHHHHHHHhcC-CCCcEEEEEeCCchHHHHH--HHHHHhh--
Q 027409 24 IKESGVAELLSAMAAGW------NAKLIVEAWTHGGPITTSIGLAIAAR-HTCARHVCIVPDERSRLAY--VKAMYDV-- 92 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~------~ak~ILEIGT~~Gys~Stl~la~A~~-~~~g~i~TIE~d~e~~~~A--r~~~~~a-- 92 (223)
-.++++++++..++... ...+|||.|||+|- ..++++.... ....+++.+|+|+..++.| +.|+...
T Consensus 298 YTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~--FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L 375 (878)
T 3s1s_A 298 PTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGN--LLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL 375 (878)
T ss_dssp SCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSH--HHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT
T ss_pred cCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccH--HHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 45677888888884321 35699999999996 4545554332 1236799999999999999 7776542
Q ss_pred -cCce-EEEEecchHHHhc-CCCCccEEEEe
Q 027409 93 -VGWV-SEVIVRQAEEVMG-ELKGVDFLVVD 120 (223)
Q Consensus 93 -~G~~-I~li~GdA~evL~-~L~~fDfVFID 120 (223)
.|.. +.+..+|.++.-. ....||+|+-+
T Consensus 376 lhGi~~~~I~~dD~L~~~~~~~~kFDVVIgN 406 (878)
T 3s1s_A 376 VSSNNAPTITGEDVCSLNPEDFANVSVVVMN 406 (878)
T ss_dssp CBTTBCCEEECCCGGGCCGGGGTTEEEEEEC
T ss_pred hcCCCcceEEecchhcccccccCCCCEEEEC
Confidence 1444 4667677665211 22579999875
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0053 Score=55.86 Aligned_cols=77 Identities=5% Similarity=-0.116 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHHHhcC------CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceE
Q 027409 24 IKESGVAELLSAMAAGWN------AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVS 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~------ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I 97 (223)
++++.+.+=+--.+...+ -..|||||.|.|. .|-.|+.... ..+|+.||+|+.....-++.+ .. + .+
T Consensus 35 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~--LT~~Ll~~~~--~~~vvavE~D~~l~~~L~~~~-~~-~-~l 107 (353)
T 1i4w_A 35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGI--QSAIFYNKYC--PRQYSLLEKRSSLYKFLNAKF-EG-S-PL 107 (353)
T ss_dssp BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCH--HHHHHHHHHC--CSEEEEECCCHHHHHHHHHHT-TT-S-SC
T ss_pred cCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCH--HHHHHHhhCC--CCEEEEEecCHHHHHHHHHhc-cC-C-CE
Confidence 677776655555554432 3679999999997 7777775322 358999999999887776665 22 2 38
Q ss_pred EEEecchHHH
Q 027409 98 EVIVRQAEEV 107 (223)
Q Consensus 98 ~li~GdA~ev 107 (223)
+++.|||+++
T Consensus 108 ~ii~~D~l~~ 117 (353)
T 1i4w_A 108 QILKRDPYDW 117 (353)
T ss_dssp EEECSCTTCH
T ss_pred EEEECCccch
Confidence 9999999754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=62.08 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=65.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCC-------------CCcEEEEEeCCchHHHHHHHHHH
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARH-------------TCARHVCIVPDERSRLAYVKAMY 90 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~-------------~~g~i~TIE~d~e~~~~Ar~~~~ 90 (223)
--++++.++|.-++... +.+||+.+||+|- ..+..+..... ....++.+|+|+..+..|+.|+.
T Consensus 228 yTP~~Vv~lmv~ll~p~-~~~VlDPaCGSG~--fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~ 304 (544)
T 3khk_A 228 YTPKSIVTLIVEMLEPY-KGRVYDPAMGSGG--FFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV 304 (544)
T ss_dssp CCCHHHHHHHHHHHCCC-SEEEEESSCTTCH--HHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHhcC-CCeEeCcccCcCc--HHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH
Confidence 34566777777776543 3489999999994 33332211110 03579999999999999999999
Q ss_pred hhcCce--EEEEecchHHHhcCC-CCccEEEEe
Q 027409 91 DVVGWV--SEVIVRQAEEVMGEL-KGVDFLVVD 120 (223)
Q Consensus 91 ~a~G~~--I~li~GdA~evL~~L-~~fDfVFID 120 (223)
-. |+. |.++.||++..-... ..||+|+..
T Consensus 305 l~-gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~N 336 (544)
T 3khk_A 305 IR-GIDFNFGKKNADSFLDDQHPDLRADFVMTN 336 (544)
T ss_dssp HT-TCCCBCCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred Hh-CCCcccceeccchhcCcccccccccEEEEC
Confidence 88 887 555999988642221 479999975
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.019 Score=49.92 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=37.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
..-..||+.+||+|. .+++.+ ..+.+++.||+++++++.|+++++++
T Consensus 234 ~~~~~vlD~f~GsGt--~~~~a~----~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGT--TLIAAA----RWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTH--HHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCH--HHHHHH----HcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 345689999999985 443432 13568999999999999999999987
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.014 Score=53.51 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=42.7
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
...+...+++||+.+|+ ++++++....++.++|+++|++|+.++..++|++.
T Consensus 223 ~l~~~~~viDvGAn~G~--~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGE--SLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCCSSCEEEEETCTTSH--HHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEECCCCcCH--HHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 34577899999999998 77777633334448999999999999999999987
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.016 Score=46.45 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC-C--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE-L--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~-L--~~f 114 (223)
..-++||.+|.+.|.+..++.++.+ .+.+|+.+++++++.+.+++ . |.. ++....+..+.+.+ . ..+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~---~G~~V~~~~~~~~~~~~~~~----~-g~~~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKM---IGARIYTTAGSDAKREMLSR----L-GVEYVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHT----T-CCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCCEEeeCCcHHHHHHHHHHhCCCCC
Confidence 3457899999665643344444432 36799999999887766543 4 654 33333444444433 2 269
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|.|| |+.- ...++ .++.+++||.+|.
T Consensus 109 D~vi-~~~g---~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 109 DVVL-NSLA---GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp EEEE-ECCC---THHHHHHHHTEEEEEEEEE
T ss_pred eEEE-ECCc---hHHHHHHHHHhccCCEEEE
Confidence 9988 4442 24555 4466788998875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.059 Score=47.99 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=66.9
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE--- 110 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~--- 110 (223)
++...-++||=+|+| |.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. +.....|..+.+.+
T Consensus 178 ~~~~~g~~VlV~GaG-~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~i~~~~~ 248 (370)
T 4ej6_A 178 SGIKAGSTVAILGGG-VIGLLTVQLARLA---GATTVILSTRQATKRRLAEE----V-GATATVDPSAGDVVEAIAGPVG 248 (370)
T ss_dssp HTCCTTCEEEEECCS-HHHHHHHHHHHHT---TCSEEEEECSCHHHHHHHHH----H-TCSEEECTTSSCHHHHHHSTTS
T ss_pred cCCCCCCEEEEECCC-HHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----c-CCCEEECCCCcCHHHHHHhhhh
Confidence 344456789999974 6655666776643 55 89999999998887765 4 655 44445666676665
Q ss_pred C--CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCC
Q 027409 111 L--KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 111 L--~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~ 149 (223)
+ +.+|+|| |+.- ....++ .+..+++||.+|.=....
T Consensus 249 ~~~gg~Dvvi-d~~G--~~~~~~~~~~~l~~~G~vv~~G~~~ 287 (370)
T 4ej6_A 249 LVPGGVDVVI-ECAG--VAETVKQSTRLAKAGGTVVILGVLP 287 (370)
T ss_dssp SSTTCEEEEE-ECSC--CHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred ccCCCCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEEeccC
Confidence 4 3799886 5542 234454 446678889888754443
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.14 Score=45.41 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=59.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVF 118 (223)
.-++||=+|.+.|.+..++.+|.+. +.+|+.++ ++++.+.++ +. |.. +.....+..+.+.+...+|+||
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~---Ga~Vi~~~-~~~~~~~~~----~l-Ga~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAW---DAHVTAVC-SQDASELVR----KL-GADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEE-CGGGHHHHH----HT-TCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEe-ChHHHHHHH----Hc-CCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 3468999996556654666666542 57888888 567665553 45 655 3333345555555556799875
Q ss_pred EeCCCcccHHHHHHhccCCCceEEEE
Q 027409 119 VDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
|+.-..+..+-..+..+++||.+|.
T Consensus 254 -d~~g~~~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 254 -DNVGGSTETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp -ESSCTTHHHHGGGGBCSSSCCEEEE
T ss_pred -ECCCChhhhhHHHHHhhcCCcEEEE
Confidence 6654443322235577788998875
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.064 Score=46.81 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=62.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDf 116 (223)
..-++||-+|++ |.+..++.+|++. +.+|+.++.++++.+.+++ . |.. +.....|..+.+.+. +.+|.
T Consensus 165 ~~g~~VlV~GaG-~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~~~~~~~~~~g~~d~ 235 (340)
T 3s2e_A 165 RPGQWVVISGIG-GLGHVAVQYARAM---GLRVAAVDIDDAKLNLARR----L-GAEVAVNARDTDPAAWLQKEIGGAHG 235 (340)
T ss_dssp CTTSEEEEECCS-TTHHHHHHHHHHT---TCEEEEEESCHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHH----c-CCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence 345789999974 5544676777643 6799999999998887754 4 655 433344555544432 47999
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
||..+.. ...++ .+..+++||.++.=-.
T Consensus 236 vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 236 VLVTAVS---PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence 9766542 34454 4456688888876443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.029 Score=49.12 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=63.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
..-++||-+|++.|.+..++.+|.+. +++|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~----l-ga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL---NFRLIAVTRNNKHTEELLR----L-GAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHh----C-CCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 34579999998866544666666543 6799999999999888876 3 544 333334555545443 269
Q ss_pred cEEEEeCCCcccHHHHHHhccCCCceEEEEeCC
Q 027409 115 DFLVVDCTSKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
|+|| |+.-.. ...+.+..+++||.+|.=-.
T Consensus 215 Dvvi-d~~g~~--~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 215 DAAI-DSIGGP--DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEEE-ESSCHH--HHHHHHHTEEEEEEEEECCC
T ss_pred cEEE-ECCCCh--hHHHHHHHhcCCCEEEEEee
Confidence 9876 554332 23445566788998887544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.047 Score=49.01 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=60.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch-HHHhcCC--C-C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA-EEVMGEL--K-G 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA-~evL~~L--~-~ 113 (223)
..-++||-+|+ .|.+..++.+|++. +. +|+.++.++++.+.|+ +. |.. |.....|. .+.+.++ + .
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~----~l-Ga~~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 184 KPGSHVYIAGA-GPVGRCAAAGARLL---GAACVIVGDQNPERLKLLS----DA-GFETIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHH---TCSEEEEEESCHHHHHHHH----TT-TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHH----Hc-CCcEEcCCCcchHHHHHHHHhCCCC
Confidence 34478999997 45544666777653 55 8999999999887765 34 664 33333443 4545443 2 6
Q ss_pred ccEEEEeCCCccc------------HHHHH-HhccCCCceEEEE
Q 027409 114 VDFLVVDCTSKDF------------ARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y------------~~~f~-~~~~l~~GgvIV~ 144 (223)
||+|| |+.-..+ ...++ .++.+++||.++.
T Consensus 255 ~Dvvi-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 255 VDCGV-DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp EEEEE-ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred CCEEE-ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 99986 6544332 23454 4566788888774
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.079 Score=46.60 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=59.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe---cchHHHhcCC-----C
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV---RQAEEVMGEL-----K 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~---GdA~evL~~L-----~ 112 (223)
++||=+|.+.|.+..++.+|++. +.+++++..+++..+..++..++. |.. +.... .|..+.+.++ .
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~i~~~t~~~~~ 244 (364)
T 1gu7_A 169 DWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKEL-GATQVITEDQNNSREFGPTIKEWIKQSGG 244 (364)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHHH-TCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred cEEEECCCCcHHHHHHHHHHHHC---CCEEEEEecCccccHHHHHHHHhc-CCeEEEecCccchHHHHHHHHHHhhccCC
Confidence 78999998667655777777653 678777776665433333444566 765 32221 3334444432 2
Q ss_pred CccEEEEeCCCcccHHHHHHhccCCCceEEEEeCC
Q 027409 113 GVDFLVVDCTSKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
.+|+|| |+.-.. .....+..+++||.+|.=..
T Consensus 245 g~Dvvi-d~~G~~--~~~~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 245 EAKLAL-NCVGGK--SSTGIARKLNNNGLMLTYGG 276 (364)
T ss_dssp CEEEEE-ESSCHH--HHHHHHHTSCTTCEEEECCC
T ss_pred CceEEE-ECCCch--hHHHHHHHhccCCEEEEecC
Confidence 699886 665332 23456677888998876443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.17 Score=43.61 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=59.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa 121 (223)
+||=+|.+.|.+..++.+|++. +.+|+.++.++++.+.+++ . |.. .++.-+..+.+..+ ..+|.| +|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~---Ga~Vi~~~~~~~~~~~~~~----l-Ga~-~vi~~~~~~~~~~~~~~~~d~v-~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL---GYQVAAVSGRESTHGYLKS----L-GAN-RILSRDEFAESRPLEKQLWAGA-IDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCGGGHHHHHH----H-TCS-EEEEGGGSSCCCSSCCCCEEEE-EES
T ss_pred eEEEECCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHh----c-CCC-EEEecCCHHHHHhhcCCCccEE-EEC
Confidence 5999998666655777777643 6789999999999888875 4 654 12222211124444 379976 577
Q ss_pred CCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 122 TSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 122 ~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
.-.. .++ .+..+++||.+|.=..
T Consensus 219 ~g~~---~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 219 VGDK---VLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp SCHH---HHHHHHHTEEEEEEEEECCC
T ss_pred CCcH---HHHHHHHHHhcCCEEEEEec
Confidence 5432 555 5567788998886443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.036 Score=48.77 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=62.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K-- 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~-- 112 (223)
...-.+||-+|+| |.+..++.+|++ .+. +|+.++.++++.+.|++ . |.. +.....|..+.+.++ +
T Consensus 164 ~~~g~~VlV~GaG-~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 164 IKLGDTVCVIGIG-PVGLMSVAGANH---LGAGRIFAVGSRKHCCDIALE----Y-GATDIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CCTTCCEEEECCS-HHHHHHHHHHHT---TTCSSEEEECCCHHHHHHHHH----H-TCCEEECGGGSCHHHHHHHHTTTC
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHH----h-CCceEEcCCCcCHHHHHHHHcCCC
Confidence 3456789999964 554466666654 255 79999999998887765 3 554 333345556655544 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.+|+|| |+.-. ...++ .++.+++||.++.=...
T Consensus 235 g~D~v~-d~~g~--~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 235 GVDKVV-IAGGD--VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp CEEEEE-ECSSC--TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCEEE-ECCCC--hHHHHHHHHHHhcCCEEEEeccc
Confidence 699987 65432 23343 44566788888765543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.20 E-value=0.087 Score=45.17 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch-HHHhcCCCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA-EEVMGELKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA-~evL~~L~~fDfVFI 119 (223)
.-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. .++.-+. .+....+..+|.||-
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----~-ga~-~~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARA---MGLRVLAAASRPEKLALPLA----L-GAE-EAATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---TTCEEEEEESSGGGSHHHHH----T-TCS-EEEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHh----c-CCC-EEEECCcchhHHHHhcCceEEEE
Confidence 457899999866654466666654 26799999999998887754 4 654 1222111 222223367999987
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEE
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
+... .++ .+..+++||.++.
T Consensus 196 -~g~~----~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 196 -VRGK----EVEESLGLLAHGGRLVY 216 (302)
T ss_dssp -CSCT----THHHHHTTEEEEEEEEE
T ss_pred -CCHH----HHHHHHHhhccCCEEEE
Confidence 6542 344 4466678888775
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.056 Score=49.25 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=56.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH---hcCC--C-CccE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV---MGEL--K-GVDF 116 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev---L~~L--~-~fDf 116 (223)
..+|+..+|.|- -|.+++.. ..++|+|+.+|+||+.++.|+ .+ . +-.++++.|+-.++ |+.+ . ++|.
T Consensus 59 giyVD~TlG~GG--HS~~iL~~-lg~~GrVig~D~Dp~Al~~A~-rL--~-~~Rv~lv~~nF~~l~~~L~~~g~~~~vDg 131 (347)
T 3tka_A 59 GIYIDGTFGRGG--HSRLILSQ-LGEEGRLLAIDRDPQAIAVAK-TI--D-DPRFSIIHGPFSALGEYVAERDLIGKIDG 131 (347)
T ss_dssp CEEEESCCTTSH--HHHHHHTT-CCTTCEEEEEESCHHHHHHHT-TC--C-CTTEEEEESCGGGHHHHHHHTTCTTCEEE
T ss_pred CEEEEeCcCCCH--HHHHHHHh-CCCCCEEEEEECCHHHHHHHH-hh--c-CCcEEEEeCCHHHHHHHHHhcCCCCcccE
Confidence 578998888774 67677654 356799999999999999885 33 2 32399999987664 4443 2 5999
Q ss_pred EEEeCCCccc
Q 027409 117 LVVDCTSKDF 126 (223)
Q Consensus 117 VFIDa~K~~Y 126 (223)
|+.|-.-+.+
T Consensus 132 ILfDLGVSS~ 141 (347)
T 3tka_A 132 ILLDLGVSSP 141 (347)
T ss_dssp EEEECSCCHH
T ss_pred EEECCccCHH
Confidence 9999875544
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.12 Score=45.94 Aligned_cols=96 Identities=19% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEE--ecchHHHhcCC--CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVI--VRQAEEVMGEL--KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li--~GdA~evL~~L--~~ 113 (223)
.-.+||=+|++ |.+..++.+|++. +. +|+.++.++++.+.|+ +. |.. |... ..+..+.+.++ +.
T Consensus 193 ~g~~VlV~GaG-~vG~~a~q~a~~~---Ga~~Vi~~~~~~~~~~~a~----~l-Ga~~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 193 PGSNVAIFGLG-TVGLAVAEGAKTA---GASRIIGIDIDSKKYETAK----KF-GVNEFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TTCCEEEECCS-HHHHHHHHHHHHH---TCSCEEEECSCTTHHHHHH----TT-TCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHH----Hc-CCcEEEccccCchhHHHHHHHhcCCC
Confidence 45789999973 5555666776653 44 7999999999988775 44 665 3322 23445555544 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeCCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKNAF 148 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DNvl 148 (223)
+|.|| |+.- ....++ .++.+++| |.++.=.+.
T Consensus 264 ~D~vi-d~~g--~~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 264 VDYSF-ECIG--NVSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp BSEEE-ECSC--CHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCEEE-ECCC--CHHHHHHHHHHhhccCCEEEEEccc
Confidence 99986 5542 344565 55777885 887764443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.053 Score=47.21 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=60.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----~-ga~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKM---KGAHTIAVASTDEKLKIAKE----Y-GAEYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH----c-CCcEEEeCCCchHHHHHHHHhCCCCc
Confidence 3457899999665654455566544 36799999999998877755 4 544 333334555555443 269
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|+|| |+.-. ..++ .+..+++||.+|.=.
T Consensus 219 D~vi-d~~g~---~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASF-DSVGK---DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEE-ECCGG---GGHHHHHHHEEEEEEEEECC
T ss_pred eEEE-ECCCh---HHHHHHHHHhccCCEEEEEc
Confidence 9876 44433 3444 445668888888643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.098 Score=46.67 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CC--CccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LK--GVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~--~fDfVF 118 (223)
+.++||+-||+|- .++.+..+... --.+..+|+|+...+..+.|+... .++.||..++... +. .+|+++
T Consensus 2 ~~~v~dLFaG~Gg--~~~g~~~~G~~-~~~v~~~E~d~~a~~~~~~N~~~~-----~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 2 PLRVLELYSGVGG--MHHALRESCIP-AQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCH--HHHHHHHHTCS-EEEEEEECCCHHHHHHHHHHCTTS-----CEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCeEEEeCcCccH--HHHHHHHCCCC-ceEEEEEeCCHHHHHHHHHhcccc-----ccccCCHHHccHhHcCcCCcCEEE
Confidence 4579999999995 66666654210 026899999999999999998765 4678888876532 32 699999
Q ss_pred EeCC----------C-------cccHHHHHHhccCC--CceEEEEeCC
Q 027409 119 VDCT----------S-------KDFARVLRFARFSN--KGAVLAFKNA 147 (223)
Q Consensus 119 IDa~----------K-------~~Y~~~f~~~~~l~--~GgvIV~DNv 147 (223)
.+-- + ..+.++++.+..++ |--+ +..||
T Consensus 74 ~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~-~~ENV 120 (343)
T 1g55_A 74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYI-LLENV 120 (343)
T ss_dssp ECCC------------------CHHHHHHHHGGGCSSCCSEE-EEEEE
T ss_pred EcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEE-EEeCC
Confidence 9843 1 23455666666555 7654 55666
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.38 Score=42.27 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=59.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEE---ecchHHHhcCC-
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVI---VRQAEEVMGEL- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li---~GdA~evL~~L- 111 (223)
...-.+||-+|+| |.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. +... ..+..+.+.++
T Consensus 169 ~~~g~~VlV~GaG-~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 169 VTLGHKVLVCGAG-PIGMVTLLVAKAM---GAAQVVVTDLSATRLSKAKE----I-GADLVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHH----T-TCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----h-CCCEEEcCcccccchHHHHHHHHh
Confidence 3445789999964 5544666776542 55 89999999998887754 4 654 3322 12223333322
Q ss_pred -CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
..+|+|| |+.- ....++ .++.+++||.++.=.
T Consensus 240 ~~g~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTI-ECTG--AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEE-ECSC--CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEE-ECCC--ChHHHHHHHHHhcCCCEEEEEe
Confidence 4799986 5542 233444 456778899887643
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.11 Score=44.87 Aligned_cols=92 Identities=11% Similarity=-0.036 Sum_probs=55.5
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVF 118 (223)
.+||-+|.+.|.+..++.+|.+. +.+|+.++.++++.+.+++ . |.. +.....+ .+.+..+ ..+|+||
T Consensus 151 ~~VlV~Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~-~~~~~~~~~~~~d~vi 221 (328)
T 1xa0_A 151 GPVLVTGATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRV----L-GAKEVLAREDVM-AERIRPLDKQRWAAAV 221 (328)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHH----T-TCSEEEECC----------CCSCCEEEEE
T ss_pred ceEEEecCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH----c-CCcEEEecCCcH-HHHHHHhcCCcccEEE
Confidence 37999998667655666776543 5789999999998887764 4 654 3322221 2334444 3699875
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
|+.-.. .++ .+..+++||.++.=..
T Consensus 222 -d~~g~~---~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 222 -DPVGGR---TLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp -ECSTTT---THHHHHHTEEEEEEEEECSC
T ss_pred -ECCcHH---HHHHHHHhhccCCEEEEEee
Confidence 665432 343 5566788898876443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.15 Score=45.42 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=60.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc-hHHHhcCC---CC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ-AEEVMGEL---KG 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd-A~evL~~L---~~ 113 (223)
..-++||-+|+ .|.+..++.+|++. ++ +|+.++.++++.+.|++ . |.. |.....+ ..+.+.++ ..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlAk~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 184 GPGSTVYVAGA-GPVGLAAAASARLL---GAAVVIVGDLNPARLAHAKA----Q-GFEIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHH----T-TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHC---CCCeEEEEcCCHHHHHHHHH----c-CCcEEccCCcchHHHHHHHHhCCCC
Confidence 34578999996 46555666777653 55 79999999998888764 4 765 3322223 34444443 26
Q ss_pred ccEEEEeCCCccc-------------HHHHH-HhccCCCceEEEEeC
Q 027409 114 VDFLVVDCTSKDF-------------ARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~Y-------------~~~f~-~~~~l~~GgvIV~DN 146 (223)
+|+|| |+.-... ...++ .++.+++||.++.=-
T Consensus 255 ~Dvvi-d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 255 VDCAV-DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEE-ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCEEE-ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 99886 6543321 23454 456678889887643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.15 Score=45.77 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
.-.+||=+|+ .|.+..++.+|++. +. +|+.++.++++.+.|++ . |.. +.....|..+.+.++ ..+
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHA---GASKVILSEPSEVRRNLAKE----L-GADHVIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT---TCSEEEEECSCHHHHHHHHH----H-TCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----c-CCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4468999997 46655666776543 55 89999999999888865 3 544 333334555555554 269
Q ss_pred cEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 115 DFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 115 DfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|+|| |+.-. .+...++.+ +.+++||.++.=-..
T Consensus 284 D~vi-d~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 284 KLFL-EATGVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp SEEE-ECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CEEE-ECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 9887 55433 233444444 455888988875443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.32 Score=44.62 Aligned_cols=86 Identities=9% Similarity=-0.024 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHHHHHh----------cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 24 IKESGVAELLSAMAAG----------WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~----------~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
..+..+=.+..++... ..=.++|++|++.|- .|-.++. .+|+|+.||+.+-. . .+.
T Consensus 184 ~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGG--WT~~l~~----rg~~V~aVD~~~l~-~----~l~--- 249 (375)
T 4auk_A 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGG--WTYQLVK----RNMWVYSVDNGPMA-Q----SLM--- 249 (375)
T ss_dssp SSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCH--HHHHHHH----TTCEEEEECSSCCC-H----HHH---
T ss_pred CCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCH--HHHHHHH----CCCEEEEEEhhhcC-h----hhc---
Confidence 5566665655555442 345689999999995 5534432 37899999986421 1 111
Q ss_pred Cce-EEEEecchHHHhcCCCCccEEEEeCCC
Q 027409 94 GWV-SEVIVRQAEEVMGELKGVDFLVVDCTS 123 (223)
Q Consensus 94 G~~-I~li~GdA~evL~~L~~fDfVFIDa~K 123 (223)
... |+++.+||.+..+.-.+||.|+.|-.-
T Consensus 250 ~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 250 DTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp TTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred cCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 223 899999999876654589999999864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.099 Score=45.38 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=61.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-++||=+|.+.|.+..++.+|.+. +.+|+.++.++++.+.+++ . |.. ++....+..+.+.++ ..+|
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~----~-Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKAL---GAKLIGTVSSPEKAAHAKA----L-GAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH----c-CCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 4578999995556544555665542 6799999999998887764 4 544 333344555555443 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
+|| |+.-. ..++ .+..+++||.+|.=..
T Consensus 212 vvi-d~~g~---~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 212 VVY-DGVGQ---DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEE-ESSCG---GGHHHHHTTEEEEEEEEECCC
T ss_pred EEE-ECCCh---HHHHHHHHHhcCCCEEEEEec
Confidence 876 55433 3444 5567788898887543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.13 Score=45.48 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=60.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGV 114 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~f 114 (223)
...-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~----~-Ga~~~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKK---AKCHVIGTCSSDEKSAFLKS----L-GCDRPINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHH----c-CCcEEEecCChhHHHHHHHhcCCCC
Confidence 34557999999555654466666654 26799999999988887765 4 654 322233444444433 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|+|| |+.-. ..++ .++.+++||.+|.=
T Consensus 233 D~vi-d~~g~---~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 233 DVVY-ESVGG---AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EEEE-ECSCT---HHHHHHHHHEEEEEEEEEC
T ss_pred CEEE-ECCCH---HHHHHHHHHHhcCCEEEEE
Confidence 9986 55433 3554 45666788887753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.16 Score=44.95 Aligned_cols=96 Identities=15% Similarity=0.019 Sum_probs=61.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
.-++||-+|++ |.+..++.+|++. ++ +|+.++.++++.+.|++ . |.. +.....|..+.+.++ +.+|
T Consensus 190 ~g~~VlV~GaG-~vG~~a~qlak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~~~~~gg~D 260 (371)
T 1f8f_A 190 PASSFVTWGAG-AVGLSALLAAKVC---GASIIIAVDIVESRLELAKQ----L-GATHVINSKTQDPVAAIKEITDGGVN 260 (371)
T ss_dssp TTCEEEEESCS-HHHHHHHHHHHHH---TCSEEEEEESCHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCCEEecCCccCHHHHHHHhcCCCCc
Confidence 34789999964 5444666776653 55 79999999998888764 3 544 333334555555443 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
+|| |+.- ....++ .++.+++||.++.=...
T Consensus 261 ~vi-d~~g--~~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 261 FAL-ESTG--SPEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EEE-ECSC--CHHHHHHHHHTEEEEEEEEECCCC
T ss_pred EEE-ECCC--CHHHHHHHHHHHhcCCEEEEeCCC
Confidence 886 5542 234554 45677888988864443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.48 Score=41.07 Aligned_cols=96 Identities=10% Similarity=-0.064 Sum_probs=63.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--Ccc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--GVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~fD 115 (223)
.-.+||=+|++.+ ...++.+|.. ..+.+|+.++.++++.+.+++ . |.. |.....|..+.+.++ + .+|
T Consensus 163 ~g~~VlV~GaG~~-g~~a~~~a~~--~~g~~Vi~~~~~~~r~~~~~~----~-Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 163 PGDWQVIFGAGGL-GNLAIQYAKN--VFGAKVIAVDINQDKLNLAKK----I-GADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp TTCEEEEECCSHH-HHHHHHHHHH--TSCCEEEEEESCHHHHHHHHH----T-TCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred CCCEEEEEcCCCc-cHHHHHHHHH--hCCCEEEEEECcHHHhhhhhh----c-CCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 3468999998643 3444444433 236799999999998776664 3 544 666777877766654 2 688
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
.+|.++.- ...++ .+..+++||.++.=-+
T Consensus 235 ~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 235 SAIVCAVA---RIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEEeccC---cchhheeheeecCCceEEEEec
Confidence 88888753 33444 4567788888876543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.026 Score=48.13 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=34.1
Q ss_pred EEEEecchHHHhcCCC--CccEEEEeCC--Cc-----------ccHHHH----HHh-ccCCCceEEEEe
Q 027409 97 SEVIVRQAEEVMGELK--GVDFLVVDCT--SK-----------DFARVL----RFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 I~li~GdA~evL~~L~--~fDfVFIDa~--K~-----------~Y~~~f----~~~-~~l~~GgvIV~D 145 (223)
.+++.||+++.|+.+. .||+||+|-- .. .|..++ +.+ +.|++||+|++-
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4689999999998873 7999999962 11 222233 322 567899988765
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.094 Score=45.60 Aligned_cols=94 Identities=20% Similarity=0.134 Sum_probs=58.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~---~G~~Vi~~~~~~~~~~~~~~----~-g~~~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARH---LGATVIGTVSTEEKAETARK----L-GCHHTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH----c-CCCEEEECCCHHHHHHHHHHhCCCCC
Confidence 3457899999655653355555543 36799999999988887765 3 443 333334444444432 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|.|| |+.-. ..++ .+..+++||.+|.=
T Consensus 216 d~vi-~~~g~---~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 216 DVVY-DSIGK---DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEE-ECSCT---TTHHHHHHTEEEEEEEEEC
T ss_pred eEEE-ECCcH---HHHHHHHHhhccCCEEEEE
Confidence 9887 55433 3444 44666788887753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.2 Score=38.23 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=57.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~L--~~fDfVF 118 (223)
.+|+=+|+ |..+..++- .....+-.++-+|.|++..+.+++ . |. .++.||+. ++|.+. ...|.|+
T Consensus 8 ~~viIiG~--G~~G~~la~--~L~~~g~~v~vid~~~~~~~~~~~----~-g~--~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGE--KLLASDIPLVVIETSRTRVDELRE----R-GV--RAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp SCEEEECC--SHHHHHHHH--HHHHTTCCEEEEESCHHHHHHHHH----T-TC--EEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCEEEECc--CHHHHHHHH--HHHHCCCCEEEEECCHHHHHHHHH----c-CC--CEEECCCCCHHHHHhcCcccCCEEE
Confidence 57888887 554455443 333345689999999998776653 4 54 67889985 466654 5799998
Q ss_pred EeCCCcccHH-HHHHhccCCCceEEEE
Q 027409 119 VDCTSKDFAR-VLRFARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~Y~~-~f~~~~~l~~GgvIV~ 144 (223)
+-.....-.. ....++.+.++.-||+
T Consensus 77 ~~~~~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 77 LTIPNGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EECCChHHHHHHHHHHHHHCCCCeEEE
Confidence 8765443322 2234455555555554
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.49 Score=43.79 Aligned_cols=82 Identities=18% Similarity=0.070 Sum_probs=52.4
Q ss_pred hcCCCeEEEEccCcchH-HHHHHHHHhcCCCCcEEEEE--eCCch----------HHHHHHHHHHhhcCceEEEEecchH
Q 027409 39 GWNAKLIVEAWTHGGPI-TTSIGLAIAARHTCARHVCI--VPDER----------SRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys-~Stl~la~A~~~~~g~i~TI--E~d~e----------~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
..+||++|=+|.+.||+ ++++++|.+ .++.++-+ +..+. ......+.++++ |.....+.+|+.
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~---~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~-G~~a~~i~~Dv~ 122 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFG---YGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE-GLYSVTIDGDAF 122 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHH---HCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH-TCCEEEEESCTT
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhh---CCCCEEEEecCCcccccccccccchhHHHHHHHHHHc-CCCceeEeCCCC
Confidence 35899999999999985 233444422 14554444 43322 234556677888 888888899985
Q ss_pred H----------HhcCCCCccEEEEeCCCc
Q 027409 106 E----------VMGELKGVDFLVVDCTSK 124 (223)
Q Consensus 106 e----------vL~~L~~fDfVFIDa~K~ 124 (223)
+ +..+++++|++.--++..
T Consensus 123 d~e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 123 SDEIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 2 223446789888777643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.28 Score=43.64 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=57.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVF 118 (223)
..-.+||-+|++ |.+..++.+|.+. +.+|+.++.++++.+.|++ . |.. .++.-...+.+.++ ..+|+||
T Consensus 193 ~~g~~VlV~GaG-~vG~~aiqlak~~---Ga~Vi~~~~~~~~~~~a~~----l-Ga~-~vi~~~~~~~~~~~~~g~Dvvi 262 (369)
T 1uuf_A 193 GPGKKVGVVGIG-GLGHMGIKLAHAM---GAHVVAFTTSEAKREAAKA----L-GAD-EVVNSRNADEMAAHLKSFDFIL 262 (369)
T ss_dssp CTTCEEEEECCS-HHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHH----H-TCS-EEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH----c-CCc-EEeccccHHHHHHhhcCCCEEE
Confidence 344789999974 5544666676542 6789999999999888875 4 654 22222222333443 5799886
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+.-.. ..++ .++.+++||.+|.
T Consensus 263 -d~~g~~--~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 263 -NTVAAP--HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp -ECCSSC--CCHHHHHTTEEEEEEEEE
T ss_pred -ECCCCH--HHHHHHHHHhccCCEEEE
Confidence 554322 1233 4466678888775
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.45 Score=41.19 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=67.8
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-- 111 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-- 111 (223)
.+....-++||=+|+| |.+..++.+|++.. ..++++++.++++.+.|++ . |.. +.....|..+.+..+
T Consensus 155 ~~~~~~g~~VlV~GaG-~vG~~aiq~ak~~G--~~~vi~~~~~~~k~~~a~~----l-Ga~~~i~~~~~~~~~~~~~~~~ 226 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAG-TIGLLAIQCAVALG--AKSVTAIDISSEKLALAKS----F-GAMQTFNSSEMSAPQMQSVLRE 226 (346)
T ss_dssp HTTCCTTSEEEEECCS-HHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHGG
T ss_pred HhccCCCCEEEEECCC-CcchHHHHHHHHcC--CcEEEEEechHHHHHHHHH----c-CCeEEEeCCCCCHHHHHHhhcc
Confidence 3444566889999975 55556666665531 2468999999998887764 4 665 555556666655544
Q ss_pred -CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 112 -KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 112 -~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
..+|.||--.. ....++ .+..+++||.++.--....+
T Consensus 227 ~~g~d~v~d~~G---~~~~~~~~~~~l~~~G~~v~~g~~~~~ 265 (346)
T 4a2c_A 227 LRFNQLILETAG---VPQTVELAVEIAGPHAQLALVGTLHQD 265 (346)
T ss_dssp GCSSEEEEECSC---SHHHHHHHHHHCCTTCEEEECCCCSSC
T ss_pred cCCccccccccc---ccchhhhhhheecCCeEEEEEeccCCC
Confidence 46887664443 334555 44677889998876665443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.13 Score=44.68 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=61.3
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CC
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KG 113 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~ 113 (223)
+...-++||-+|++.|.+..++.+|.+ .+.+|+.++.++++.+.+. ++. |.. +.....+..+.+.++ ..
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~---~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARL---KGCRVVGIAGGAEKCRFLV---EEL-GFDGAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHH---HTT-CCSEEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHH---HHc-CCCEEEECCCHHHHHHHHHhcCCC
Confidence 344567899999876654455555543 3679999999998877662 234 554 333334555545443 36
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|+|| |+.-. ..++ .+..+++||.+|.=
T Consensus 219 ~d~vi-~~~g~---~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 219 IDVFF-DNVGG---EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEE-ESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred ceEEE-ECCCc---chHHHHHHHHhhCCEEEEE
Confidence 99876 44432 3555 45677888988863
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.25 Score=43.66 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--CCc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--KGV 114 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~~f 114 (223)
-++||-+|+ .|.+..++.+|++. +. +|+.++.++++.+.|++ . |.. ++... .+..+.+.++ +.+
T Consensus 196 g~~VlV~Ga-G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 196 GSTCAVFGL-GCVGLSAIIGCKIA---GASRIIAIDINGEKFPKAKA----L-GATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHH----T-TCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH----h-CCcEEEccccccchHHHHHHHHhCCCc
Confidence 468999996 36555666776543 55 89999999999887764 4 654 22221 2344545443 379
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeC
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DN 146 (223)
|+|| |+.- ....++ .++.+++| |.+|.=.
T Consensus 267 Dvvi-d~~G--~~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 267 DYSL-DCAG--TAQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SEEE-ESSC--CHHHHHHHHHTBCTTTCEEEECC
T ss_pred cEEE-ECCC--CHHHHHHHHHHhhcCCCEEEEEC
Confidence 9886 6542 234554 45777888 8877533
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.18 Score=44.37 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=57.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec-chHHHhcCCCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR-QAEEVMGELKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G-dA~evL~~L~~fDf 116 (223)
..-++||-+|+ .|.+..++.+|++. +.+|+.++.++++.+.|++ . |.. +..... +..+.+. ..+|+
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~---Ga~Vi~~~~~~~~~~~~~~----l-Ga~~v~~~~~~~~~~~~~~--~~~D~ 246 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAM---GAETYVISRSSRKREDAMK----M-GADHYIATLEEGDWGEKYF--DTFDL 246 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHH----H-TCSEEEEGGGTSCHHHHSC--SCEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHH----c-CCCEEEcCcCchHHHHHhh--cCCCE
Confidence 34579999998 46544666776553 6789999999999888775 4 544 222222 3344333 47999
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|| |+.-......++ .+..+++||.++.
T Consensus 247 vi-d~~g~~~~~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 247 IV-VCASSLTDIDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EE-ECCSCSTTCCTTTGGGGEEEEEEEEE
T ss_pred EE-ECCCCCcHHHHHHHHHHhcCCCEEEE
Confidence 86 554320012233 3455677888775
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.21 Score=43.23 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=57.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L--~~f 114 (223)
..-++||-.|++.|.+..++.++.+ .+.+|+.+++++++.+.++ +. |.. ++... .+..+.+.++ +.+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~---~G~~V~~~~~~~~~~~~~~----~~-g~~~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKIAYLK----QI-GFDAAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHH----HT-TCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHH----hc-CCcEEEecCCHHHHHHHHHHHhCCCC
Confidence 3457899999866653344444432 3679999999988877663 33 543 33222 3444444432 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|.+|--+. . ..++ .+..+++||.++.=
T Consensus 216 d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 216 DCYFDNVG-G---EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEEESSC-H---HHHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCC-h---HHHHHHHHHHhcCCEEEEE
Confidence 98865444 2 2354 45667888988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.14 Score=44.98 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=59.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--Cc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--GV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~f 114 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +... .+..+.+.++ + .+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----~-ga~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKG---MGAKVIAVVNRTAATEFVKS----V-GADIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHH----H-TCSEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHh----c-CCcEEecCc-hhHHHHHHHHhCCCCc
Confidence 3457899999866654466666654 36799999999999887776 3 544 3333 4445555443 2 69
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|+||--+... .++ .+..+++||.+|.=
T Consensus 229 Dvvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 229 DMVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 9886444332 343 45666788887753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.25 Score=43.60 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=60.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~~ 113 (223)
.-++||-+|++ |.+..++.+|++. ++ +|+.++.++++.+.|++ . |.. ++... .+..+.+.++ +.
T Consensus 191 ~g~~VlV~GaG-~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 191 PGSTCAVFGLG-GVGFSAIVGCKAA---GASRIIGVGTHKDKFPKAIE----L-GATECLNPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHHH----T-TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH----c-CCcEEEecccccchHHHHHHHHhCCC
Confidence 34789999963 6555666777653 55 89999999999888764 4 654 22221 2344545443 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DNv 147 (223)
+|+|| |+.- ....++ .+..+++| |.+|.=..
T Consensus 262 ~Dvvi-d~~g--~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 262 VDYAV-ECAG--RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp BSEEE-ECSC--CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCEEE-ECCC--CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 99886 5542 234454 45777888 88875443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.26 Score=44.07 Aligned_cols=99 Identities=11% Similarity=-0.017 Sum_probs=56.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.++++||=+|+| |.+..++.++ ..-+.+|+-+++++++.+.+++.+... +..+.-+..+.-..+..+|+| |
T Consensus 165 l~~~~VlViGaG-gvG~~aa~~a---~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvV-I 235 (361)
T 1pjc_A 165 VKPGKVVILGGG-VVGTEAAKMA---VGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLL-I 235 (361)
T ss_dssp BCCCEEEEECCS-HHHHHHHHHH---HHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEE-E
T ss_pred CCCCEEEEECCC-HHHHHHHHHH---HhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEE-E
Confidence 567999999984 5422222332 223569999999999988888776543 333332222221222369988 5
Q ss_pred eCCCcc---cHHH-H-HHhccCCCceEEEEeCCC
Q 027409 120 DCTSKD---FARV-L-RFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 120 Da~K~~---Y~~~-f-~~~~~l~~GgvIV~DNvl 148 (223)
++.... .+.+ . +.+..+++||+|+ |=..
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~iv-dv~~ 268 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIV-DVAV 268 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEE-ETTC
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEE-EEec
Confidence 564221 1121 2 2445668888665 4433
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.16 Score=44.72 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=59.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+|
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----l-Ga~~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARA---FGAEVYATAGSTGKCEACER----L-GAKRGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHh----c-CCCEEEeCCchHHHHHHHHHhCCCce
Confidence 3457899996555654455556543 36799999999998888765 4 544 333344555555443 3799
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+|| |+.-.. .++ .+..+++||.++.=.
T Consensus 238 vvi-d~~g~~---~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 238 IIL-DMIGAA---YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEE-ESCCGG---GHHHHHHTEEEEEEEEECC
T ss_pred EEE-ECCCHH---HHHHHHHHhccCCEEEEEE
Confidence 776 554332 343 456667788877543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.12 Score=44.68 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=57.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+|
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~---~G~~V~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKA---LGAKLIGTVGTAQKAQSALK----A-GAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCCEEEECCCccHHHHHHHHhCCCCce
Confidence 457899999665654355555543 36799999999988887765 3 443 332233444444332 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
.||--+. ...++ .+..+++||.+|.=
T Consensus 212 ~vi~~~g----~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 212 VVYDSVG----RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEECSC----GGGHHHHHHTEEEEEEEEEC
T ss_pred EEEECCc----hHHHHHHHHHhcCCCEEEEE
Confidence 9875554 33454 44566788887753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.92 Score=40.05 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCC--CccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELK--GVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~--~fDfVF 118 (223)
++||=+|.+.|.+..++.+|++. .+.+|+.++.++++.+.+++ . |.. +.. ..|..+.+.++. .+|.||
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~--~g~~Vi~~~~~~~~~~~~~~----l-Gad~vi~~-~~~~~~~v~~~~~~g~Dvvi 244 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQR--TDLTVIATASRPETQEWVKS----L-GAHHVIDH-SKPLAAEVAALGLGAPAFVF 244 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHH----T-TCSEEECT-TSCHHHHHHTTCSCCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHH----c-CCCEEEeC-CCCHHHHHHHhcCCCceEEE
Confidence 47999995546555666776542 25799999999998888764 4 655 222 234555566653 799775
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|+.- -...++ .+..+++||.+|.
T Consensus 245 -d~~g--~~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 245 -STTH--TDKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp -ECSC--HHHHHHHHHHHSCTTCEEEE
T ss_pred -ECCC--chhhHHHHHHHhcCCCEEEE
Confidence 5532 223454 4466778888775
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.17 Score=43.80 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=57.4
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch--HHHhcCC--CCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA--EEVMGEL--KGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA--~evL~~L--~~fDfVFI 119 (223)
+||=+|.+.|.+..++.+|.+. +.+++.++.++++.+.+++ . |.. .++.-+- .+.+..+ ..+|+||
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~~~~~~~~~~----l-Ga~-~v~~~~~~~~~~~~~~~~~~~d~vi- 222 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKR---GYDVVASTGNREAADYLKQ----L-GAS-EVISREDVYDGTLKALSKQQWQGAV- 222 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHH---TCCEEEEESSSSTHHHHHH----H-TCS-EEEEHHHHCSSCCCSSCCCCEEEEE-
T ss_pred eEEEECCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH----c-CCc-EEEECCCchHHHHHHhhcCCccEEE-
Confidence 8999998667655666776553 5689999999998887764 4 554 1221111 1223333 2699875
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
|+.-. . .++ .++.+++||.++.=..
T Consensus 223 d~~g~--~-~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 223 DPVGG--K-QLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp ESCCT--H-HHHHHHTTEEEEEEEEECCC
T ss_pred ECCcH--H-HHHHHHHhhcCCCEEEEEec
Confidence 66543 2 444 5577788998876443
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.65 Score=33.95 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=49.8
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC--CccEEEEeCCCcc----cHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK--GVDFLVVDCTSKD----FARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~--~fDfVFIDa~K~~----Y~~~f~~~~ 134 (223)
..+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+. ++|+||+|..-.. -.++++.++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL-DVTIQ-CFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS-SSEEE-EESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-CcEEE-EeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHH
Confidence 358999999999999999999998 99855 6778888888773 7999999987544 234444444
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.88 Score=39.73 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=59.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC----
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL---- 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L---- 111 (223)
...-++||-+|+ .|.+..++.+|.+. +.+|+.++.++++.+.+++ . |.. +.... .+..+.+.++
T Consensus 166 ~~~g~~VlV~Ga-G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~----l-Ga~~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 166 VQLGTTVLVIGA-GPIGLVSVLAAKAY---GAFVVCTARSPRRLEVAKN----C-GADVTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHH----T-TCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH----h-CCCEEEcCcccccHHHHHHHHhccc
Confidence 345578999996 35544666666542 6789999999998887763 4 655 33331 3333333321
Q ss_pred --CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 112 --KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 112 --~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
..+|+|| |+.-. ...++ .++.+++||.+|.=.
T Consensus 237 ~g~g~D~vi-d~~g~--~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 237 IGDLPNVTI-DCSGN--EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSSCCSEEE-ECSCC--HHHHHHHHHHSCTTCEEEECS
T ss_pred cCCCCCEEE-ECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence 3699986 55422 33444 456678888887643
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.21 Score=45.14 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=57.5
Q ss_pred CeEEEEcc------CcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccE
Q 027409 43 KLIVEAWT------HGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 43 k~ILEIGT------~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDf 116 (223)
.+||++|. +-| | |.+.-..+.+|.|+.+|++|-.. .+ + .++.||..++.. -.+||+
T Consensus 111 mrVLDLGA~s~kg~APG---S--~VLr~~~p~g~~VVavDL~~~~s--------da-~---~~IqGD~~~~~~-~~k~DL 172 (344)
T 3r24_A 111 MRVIHFGAGSDKGVAPG---T--AVLRQWLPTGTLLVDSDLNDFVS--------DA-D---STLIGDCATVHT-ANKWDL 172 (344)
T ss_dssp CEEEEESCCCTTSBCHH---H--HHHHHHSCTTCEEEEEESSCCBC--------SS-S---EEEESCGGGEEE-SSCEEE
T ss_pred CEEEeCCCCCCCCCCCc---H--HHHHHhCCCCcEEEEeeCccccc--------CC-C---eEEEcccccccc-CCCCCE
Confidence 58999995 655 4 22222245567999999987531 22 2 349999766333 258999
Q ss_pred EEEeCCCccc----------HHHHHH----h-ccCCCceEEEEeCCCCCC
Q 027409 117 LVVDCTSKDF----------ARVLRF----A-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 117 VFIDa~K~~Y----------~~~f~~----~-~~l~~GgvIV~DNvl~~g 151 (223)
|+-|.++.-- ..++++ + ..|++||-+++- +|.++
T Consensus 173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK-VFQGs 221 (344)
T 3r24_A 173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK-ITEHS 221 (344)
T ss_dssp EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE-ECSSS
T ss_pred EEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE-EecCC
Confidence 9999654321 224443 3 457999999998 44443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.33 Score=42.45 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=57.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE-ecchHHHhcCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI-VRQAEEVMGEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li-~GdA~evL~~L--~~fD 115 (223)
.-++||-+|++.|.+..++.+|.+ .+.+|+.+++++++.+.+++ . |.. +++. ..+..+.+.++ ..+|
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~---~Ga~V~~~~~~~~~~~~~~~----~-g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKA---MGYRVLGIDGGEGKEELFRS----I-GGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEECSTTHHHHHHH----T-TCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---CCCcEEEEcCCHHHHHHHHH----c-CCceEEecCccHhHHHHHHHHhCCCCC
Confidence 347899999865543344455433 36799999999988776654 4 554 3322 23334444432 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.||.-+. ....++ .++.+++||.||.=.
T Consensus 241 ~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 241 GVINVSV---SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEECSS---CHHHHHHHTTSEEEEEEEEECC
T ss_pred EEEECCC---cHHHHHHHHHHHhcCCEEEEEe
Confidence 8875443 234555 446668888887543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.39 Score=43.49 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=64.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC--------CCCc
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE--------LKGV 114 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~--------L~~f 114 (223)
++|++=||+|- .++.+..| |.+ +..+|+|+...+..+.|+... .++.||..++..+ ...+
T Consensus 4 ~vidLFsG~GG--lslG~~~a----G~~~v~avE~d~~a~~t~~~N~~~~-----~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 4 NVIDLFSGVGG--LSLGAARA----GFDVKMAVEIDQHAINTHAINFPRS-----LHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp EEEEETCTTSH--HHHHHHHH----TCEEEEEECSCHHHHHHHHHHCTTS-----EEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred eEEEEccCcCH--HHHHHHHC----CCcEEEEEeCCHHHHHHHHHhCCCC-----ceEecChhhcCHHHHHhhcccCCCe
Confidence 78999999885 66666554 344 679999999888888887655 6778888765321 1479
Q ss_pred cEEEEeCC----------------CcccHHHHHHhccCCCceEEEEeCC
Q 027409 115 DFLVVDCT----------------SKDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 115 DfVFIDa~----------------K~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
|+|+.+.- ...+.+|++.+..++|- ++|..||
T Consensus 73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~-~~v~ENV 120 (376)
T 3g7u_A 73 DGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL-FFLAENV 120 (376)
T ss_dssp CEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS-EEEEEEC
T ss_pred eEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC-EEEEecc
Confidence 99999853 12455666666555664 6677776
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.4 Score=41.90 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=58.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fDfV 117 (223)
+.||=.|-+.|.+..++.+|.+. +.+|+.++.++++.+.+++ . |.. +.....|..+.+.++ ..+|+|
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~----~-Ga~~~~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE---GFRPIVTVRRDEQIALLKD----I-GAAHVLNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESCGGGHHHHHH----H-TCSEEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH----c-CCCEEEECCcHHHHHHHHHHhcCCCCcEE
Confidence 56665544445544555666543 6799999999999888864 4 554 443344555555554 269987
Q ss_pred EEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 118 VVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
| |+.-... .-..+..+++||.+|.=.
T Consensus 238 i-d~~g~~~--~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 238 L-DAVTGPL--ASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp E-ESSCHHH--HHHHHHHSCTTCEEEECC
T ss_pred E-ECCCChh--HHHHHhhhcCCCEEEEEe
Confidence 5 6553322 223556778888887643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.88 Score=40.25 Aligned_cols=95 Identities=6% Similarity=-0.007 Sum_probs=59.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fD 115 (223)
..-++||=+|.+.|.+..++.+|.+. +.+++.+- ++++.+.|++ . |.. +.....|..+.+.++ +.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~---Ga~Vi~~~-~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS---GYIPIATC-SPHNFDLAKS----R-GAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEE-CGGGHHHHHH----T-TCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC---CCEEEEEe-CHHHHHHHHH----c-CCcEEEECCCchHHHHHHHHccCCcc
Confidence 34578999998656555677777653 56887774 7887776653 4 665 444455666666554 3699
Q ss_pred EEEEeCCCcccHHHHH-HhccC-CCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFS-NKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l-~~GgvIV~DN 146 (223)
+|| |+--. ...++ .+..+ ++||.+|.=.
T Consensus 234 ~v~-d~~g~--~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YAL-DCITN--VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEE-ESSCS--HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEE-ECCCc--hHHHHHHHHHhhcCCCEEEEEe
Confidence 986 55422 23444 34556 6888887644
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.26 E-value=0.11 Score=45.86 Aligned_cols=48 Identities=2% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEEecchHHHhcCCC--CccEEEEeCC--Cc-----------cc----HHHHHHh-ccCCCceEEEE
Q 027409 97 SEVIVRQAEEVMGELK--GVDFLVVDCT--SK-----------DF----ARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 97 I~li~GdA~evL~~L~--~fDfVFIDa~--K~-----------~Y----~~~f~~~-~~l~~GgvIV~ 144 (223)
.+++.||+++.|+.+. .||+||+|-- .. .| .+.+..+ ++|++||.|++
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i 82 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV 82 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEE
Confidence 8999999999998873 7999999942 11 12 2333333 56789998776
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.66 Score=40.67 Aligned_cols=98 Identities=14% Similarity=-0.038 Sum_probs=62.4
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCceEEEEe-----cchHHHhcCC
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWVSEVIV-----RQAEEVMGEL 111 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~-----GdA~evL~~L 111 (223)
+...-++||=+|+ .|.+..++.+|++. +.+ |+.++.++++.+.|++. ... -+.... .|..+.+.++
T Consensus 176 ~~~~g~~VlV~Ga-G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 176 GVRLGDPVLICGA-GPIGLITMLCAKAA---GACPLVITDIDEGRLKFAKEI-CPE---VVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp TCCTTCCEEEECC-SHHHHHHHHHHHHT---TCCSEEEEESCHHHHHHHHHH-CTT---CEEEECCSCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-chh---cccccccccchHHHHHHHHHH
Confidence 3445578999997 46655677777653 555 99999999999999987 422 133331 3334444433
Q ss_pred ---CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 112 ---KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 112 ---~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
..+|+|| |+.- -...++ .++.+++||.++.=-
T Consensus 248 t~g~g~Dvvi-d~~g--~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 248 FGGIEPAVAL-ECTG--VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp TSSCCCSEEE-ECSC--CHHHHHHHHHHSCTTCEEEECC
T ss_pred hCCCCCCEEE-ECCC--ChHHHHHHHHHhcCCCEEEEEc
Confidence 2699887 5432 223444 456778889888643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.56 Score=41.35 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=59.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~~ 113 (223)
.-++||-+|+ .|.+..++.+|++. +. +|+.++.++++.+.|++ . |.. +.... .+..+.+.++ +.
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~---Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSA---GAKRIIAVDLNPDKFEKAKV----F-GATDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHH----T-TCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHH----h-CCceEEeccccchhHHHHHHHHhCCC
Confidence 3468999996 46545666776542 55 89999999999888764 4 654 22211 2344444433 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DNv 147 (223)
+|+|| |+.- ....++ .++.+++| |.+|.=..
T Consensus 263 ~D~vi-d~~g--~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSL-ECVG--NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEE-ECSC--CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEE-ECCC--CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 99886 5542 234454 45777888 88876443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.35 Score=42.19 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. ++....+..+.+.++ ..+|
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~---~G~~Vi~~~~~~~~~~~~~~----~-ga~~~~d~~~~~~~~~~~~~~~~~~~d 237 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKL---FGARVIATAGSEDKLRRAKA----L-GADETVNYTHPDWPKEVRRLTGGKGAD 237 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----H-TCSEEEETTSTTHHHHHHHHTTTTCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHh----c-CCCEEEcCCcccHHHHHHHHhCCCCce
Confidence 447899999865654455566543 36799999999998888764 4 544 333233444444432 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
.||--+. .. .++ .+..+++||.+|.
T Consensus 238 ~vi~~~g-~~---~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 238 KVVDHTG-AL---YFEGVIKATANGGRIAI 263 (343)
T ss_dssp EEEESSC-SS---SHHHHHHHEEEEEEEEE
T ss_pred EEEECCC-HH---HHHHHHHhhccCCEEEE
Confidence 9875555 32 333 3455577887775
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.054 Score=47.90 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=64.0
Q ss_pred CCcHHHHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
-.+...-.++.+.-+. ....+||++|||.|- .+-..+ ....-+.++.+++..+....++. .... |.. +.+
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGG--WSQvAa--~~~~~~~v~g~dVGvDl~~~pi~-~~~~-g~~ii~~- 127 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGG--WCYYAA--AQKEVSGVKGFTLGRDGHEKPMN-VQSL-GWNIITF- 127 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTCH--HHHHHH--TSTTEEEEEEECCCCTTCCCCCC-CCBT-TGGGEEE-
T ss_pred ccccHHHHHHHHHHhCCCCCCCEEEEecCCCCH--HHHHHH--HhcCCCcceeEEEeccCcccccc-cCcC-CCCeEEE-
Confidence 4566677777766662 245689999999993 332221 12222456666665332110111 1222 445 444
Q ss_pred ecchHHHhcCC--CCccEEEEeCCCc-------ccH--HHHHHh-ccCCCc-eEEEEeCCCC
Q 027409 101 VRQAEEVMGEL--KGVDFLVVDCTSK-------DFA--RVLRFA-RFSNKG-AVLAFKNAFQ 149 (223)
Q Consensus 101 ~GdA~evL~~L--~~fDfVFIDa~K~-------~Y~--~~f~~~-~~l~~G-gvIV~DNvl~ 149 (223)
.+++ ++. .+ .+||+|+.|.... ++. .+++.+ +.|+|| |..|+ -+|.
T Consensus 128 ~~~~-dv~-~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 128 KDKT-DIH-RLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp ECSC-CTT-TSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred eccc-eeh-hcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 4554 322 23 3799999998554 211 223333 567999 99999 5666
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.41 Score=41.91 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=57.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC---CCcc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L---~~fD 115 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.+ .++++.+.+++ . |.. |. ...+..+.+.++ ..+|
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~---~Ga~Vi~~-~~~~~~~~~~~----l-Ga~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALA---RGARVFAT-ARGSDLEYVRD----L-GATPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEE-ECHHHHHHHHH----H-TSEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHH---CCCEEEEE-eCHHHHHHHHH----c-CCCEec-cCCCHHHHHHHHhcCCCce
Confidence 3457899999655654466666654 36789988 88887766654 4 655 44 334445555443 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
.|| |+.-. +.++ .+..+++||.+|.
T Consensus 219 ~vi-d~~g~---~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 219 LVY-DTLGG---PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp EEE-ESSCT---HHHHHHHHHEEEEEEEEE
T ss_pred EEE-ECCCc---HHHHHHHHHHhcCCeEEE
Confidence 775 55433 3444 4566777888775
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.78 Score=32.94 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=47.3
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~ 135 (223)
+.+|.-+|.|+...+.-++.+++. |+.+. ...++.+.+..+ .++|+|++|..-. .-.++++.++.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSL-GATTV-LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRN 75 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 468999999999999999999998 99844 356776666654 3799999998633 33455555543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.15 Score=45.18 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEE-ecchHHHhcCCC--CccEEEEeCC----------CcccHHHH----HH-hccCCCceEEEEe
Q 027409 97 SEVI-VRQAEEVMGELK--GVDFLVVDCT----------SKDFARVL----RF-ARFSNKGAVLAFK 145 (223)
Q Consensus 97 I~li-~GdA~evL~~L~--~fDfVFIDa~----------K~~Y~~~f----~~-~~~l~~GgvIV~D 145 (223)
.+++ .||+++.|+.|. .||+||+|-- .+.|..++ .. .++|++||+|++-
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7888 999999999884 7999999962 13354333 32 2567899988764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.67 E-value=0.26 Score=43.87 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce--EEEE---ecchHHHhcCC--C-
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI---VRQAEEVMGEL--K- 112 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li---~GdA~evL~~L--~- 112 (223)
-++||-+| +.|.+..++.+|.+. + .+|+.++.++++.+.+++ . |.. +... ..|..+.+.++ +
T Consensus 196 g~~VlV~G-aG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 196 GKTVVIQG-AGPLGLFGVVIARSL---GAENVIVIAGSPNRLKLAEE----I-GADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHT---TBSEEEEEESCHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHc---CCceEEEEcCCHHHHHHHHH----c-CCcEEEeccccCcchHHHHHHHHhCCC
Confidence 36899999 556655666776542 5 499999999998887763 4 654 2222 22333444433 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.+|+|| |+.- ....++ .++.+++||.+|.=.
T Consensus 267 g~Dvvi-d~~g--~~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFIL-EATG--DSRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEEE-ECSS--CTTHHHHHHHHEEEEEEEEECC
T ss_pred CCcEEE-ECCC--CHHHHHHHHHHHhcCCEEEEEe
Confidence 699986 5542 122343 445567888887543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.91 Score=38.37 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=57.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc---
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG--- 109 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~--- 109 (223)
+...|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+.+.+.++.. |..+.++..|..+ .+.
T Consensus 21 m~~~k~~lVTGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 21 MSRPQTAFVTGVSSG-IGLAVARTLAA--RGIAVYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp ----CEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 346789999999877 45666555443 4789999999999999988888887 7778888888632 122
Q ss_pred -CCCCccEEEEeCC
Q 027409 110 -ELKGVDFLVVDCT 122 (223)
Q Consensus 110 -~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 97 ~~~g~id~lv~nAg 110 (279)
T 3sju_A 97 ERFGPIGILVNSAG 110 (279)
T ss_dssp HHHCSCCEEEECCC
T ss_pred HHcCCCcEEEECCC
Confidence 2247999998775
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} | Back alignment and structure |
|---|
Probab=91.59 E-value=1.2 Score=31.93 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=48.8
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ .++|+|++|..-.. -.++++.++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 74 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRD-HWQVE-IAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQ 74 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHC-CcEEE-EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 458999999999999999999998 99854 566777766655 47999999986433 3455555543
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.7 Score=33.75 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeC
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDC 121 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa 121 (223)
.-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+||+|.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKD-GFNVI-WAKNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGG-TCEEE-EESSHHHHHHHHTTSCCSEEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhccCCCEEEEeC
Confidence 358999999999999999999998 99855 556666665544 3799999998
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.78 Score=34.23 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
...+|.-+|.|+...+.-+..+++. |+.|. ...++.+.+..+ ..||+||+|..-.. -.++++.++
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 81 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPL-PYTLH-FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIH 81 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTS-SCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhccc-CcEEE-EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHH
Confidence 3468999999999999999999998 98754 556777666655 37999999986433 345555554
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.33 Score=41.74 Aligned_cols=87 Identities=7% Similarity=-0.085 Sum_probs=53.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEe
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFID 120 (223)
.-++||=+|. .|.+..++.+|++. +.+|+.++ ++++.+.+++ . |.. .++. | .+.+ -..+|+|| |
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~---Ga~Vi~~~-~~~~~~~~~~----l-Ga~-~v~~-d-~~~v--~~g~Dvv~-d 205 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNA---GYVVDLVS-ASLSQALAAK----R-GVR-HLYR-E-PSQV--TQKYFAIF-D 205 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHH---TCEEEEEC-SSCCHHHHHH----H-TEE-EEES-S-GGGC--CSCEEEEE-C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCEEEEEE-ChhhHHHHHH----c-CCC-EEEc-C-HHHh--CCCccEEE-E
Confidence 4578999999 56655777777653 67999999 8888888765 4 665 2222 5 3333 14799876 6
Q ss_pred CCCcccHHHHHHhccCCCceEEEEe
Q 027409 121 CTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 121 a~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+.-... .-..+..+++||.+|.=
T Consensus 206 ~~g~~~--~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 206 AVNSQN--AAALVPSLKANGHIICI 228 (315)
T ss_dssp C---------TTGGGEEEEEEEEEE
T ss_pred CCCchh--HHHHHHHhcCCCEEEEE
Confidence 644332 22345667888877653
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.23 Score=38.48 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred HhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 63 IAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 63 ~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.+.+..+-||.-+|-|+...+..+..+++. |+.+.....|+.+.+..+ .+||+|++|-.=..- .++.+.++
T Consensus 6 e~~m~k~~rILiVDD~~~~r~~l~~~L~~~-G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir 80 (134)
T 3to5_A 6 EAILNKNMKILIVDDFSTMRRIVKNLLRDL-GFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIR 80 (134)
T ss_dssp ---CCTTCCEEEECSCHHHHHHHHHHHHHT-TCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-CCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 445655678999999999999999999999 997333456777766655 379999999863332 44555554
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.25 Score=43.48 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=55.4
Q ss_pred CeEEEEccCcchHHHH-HHHH-HhcCCCCcE-EEEEeCCch---HHHHHHHHHHhhcCce-EEEEecchHHHhcCC-CCc
Q 027409 43 KLIVEAWTHGGPITTS-IGLA-IAARHTCAR-HVCIVPDER---SRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 43 k~ILEIGT~~Gys~St-l~la-~A~~~~~g~-i~TIE~d~e---~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-~~f 114 (223)
++||=+|. .|.+..+ +.+| ++ .+.+ |+.++.+++ +.+.+++ . |.. +.....|..+ +.++ +.+
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~---~Ga~~Vi~~~~~~~~~~~~~~~~~----l-Ga~~v~~~~~~~~~-i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDD---KGYENLYCLGRRDRPDPTIDIIEE----L-DATYVDSRQTPVED-VPDVYEQM 243 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCT---TCCCEEEEEECCCSSCHHHHHHHH----T-TCEEEETTTSCGGG-HHHHSCCE
T ss_pred CEEEEECC-CHHHHHHHHHHHHHH---cCCcEEEEEeCCcccHHHHHHHHH----c-CCcccCCCccCHHH-HHHhCCCC
Confidence 89999997 4554445 5554 33 3565 999999998 8777753 4 665 4111223333 3322 269
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
|+|| |+.-. ...++ .++.+++||.+|.=..
T Consensus 244 Dvvi-d~~g~--~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIY-EATGF--PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEE-ECSCC--HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEE-ECCCC--hHHHHHHHHHHhcCCEEEEEeC
Confidence 9986 66432 23444 4566688888876433
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.18 E-value=1.3 Score=32.00 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=47.4
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEEEeCCCc--ccHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTSK--DFARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K~--~Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-++.+++. |+.+.. ..++.+.+..+ .++|+||+|..-. .-.++++.++.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~-~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 76 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSR-GIDAVG-ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRA 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT-TCCEEE-ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHc-CceEEE-eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHh
Confidence 468999999999999999999998 998443 45555555444 3499999998633 33555665543
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.57 Score=33.78 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=46.2
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS 136 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l 136 (223)
+|.-+|.|+...+.-+..+++. |+.+.....++.+.+..+ ..+|+|++|..-. +-.++++.++..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 71 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR 71 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHT-TEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHhhC-CcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhc
Confidence 6888999999999999999998 977543445555544444 3799999998643 335556655433
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.86 Score=40.10 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=47.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh--cCceEEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV--VGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
++.+|.=||+ |+.++++++..+....-+.|+-+|+|+++++.-..-+.+. +...+++..+| .+ .+..-|+|+
T Consensus 6 ~~~KI~IiGa--G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~---a~~~aDvVi 79 (318)
T 1y6j_A 6 SRSKVAIIGA--GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-YS---DVKDCDVIV 79 (318)
T ss_dssp -CCCEEEECC--SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-GG---GGTTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC-HH---HhCCCCEEE
Confidence 4678999997 7778888777666544468999999988766423334443 12126666554 22 345799999
Q ss_pred EeCCCc
Q 027409 119 VDCTSK 124 (223)
Q Consensus 119 IDa~K~ 124 (223)
+=+...
T Consensus 80 i~~g~p 85 (318)
T 1y6j_A 80 VTAGAN 85 (318)
T ss_dssp ECCCC-
T ss_pred EcCCCC
Confidence 987543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=91.07 E-value=0.72 Score=40.67 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=58.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~~ 113 (223)
.-++||-+|+ .|.+..++.+|.+. +. +|+.++.++++.+.|++ . |.. ++... .+..+.+.++ +.
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~---Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAA---GAARIIGVDINKDKFAKAKE----V-GATECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT---TCSEEEEECSCGGGHHHHHH----T-TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH----h-CCceEecccccchhHHHHHHHHhCCC
Confidence 3478999996 46544666666542 55 89999999999887753 4 654 22221 2344445443 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DN 146 (223)
+|+|| |+.-. ...++ .++.+++| |.+|.=.
T Consensus 262 ~D~vi-d~~g~--~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 262 VDFSF-EVIGR--LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp BSEEE-ECSCC--HHHHHHHHHHBCTTTCEEEECS
T ss_pred CcEEE-ECCCC--HHHHHHHHHHhhcCCcEEEEec
Confidence 99886 65422 33454 45667888 8877543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.02 E-value=0.82 Score=35.01 Aligned_cols=96 Identities=7% Similarity=0.001 Sum_probs=56.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc-hHHHHHHHHHHhhcCceEEEEecchH--HHhcC--CCCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE-RSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE--LKGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~-e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~--L~~fD 115 (223)
..++|+=+|+ |..++.++-. ....+-.++-||.++ ++.+..++.+.. | ++++.||+. +.|.+ ++..|
T Consensus 2 ~~~~vlI~G~--G~vG~~la~~--L~~~g~~V~vid~~~~~~~~~~~~~~~~--~--~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 2 RKDHFIVCGH--SILAINTILQ--LNQRGQNVTVISNLPEDDIKQLEQRLGD--N--ADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CCSCEEEECC--SHHHHHHHHH--HHHTTCCEEEEECCCHHHHHHHHHHHCT--T--CEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCCcEEEECC--CHHHHHHHHH--HHHCCCCEEEEECCChHHHHHHHHhhcC--C--CeEEEcCCCCHHHHHHcChhhCC
Confidence 3467888886 6655655433 323355799999984 555444443322 3 578899986 45653 56899
Q ss_pred EEEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
.|++-.....--... ..++.+.+..-|++
T Consensus 74 ~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 74 AILALSDNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred EEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence 999877544322222 23444434334443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.98 E-value=0.35 Score=42.61 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=57.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
..-++||-+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.++ +. |.. ++....+..+.+.++ ..+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~----~~-ga~~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARA---YGLKILGTAGTEEGQKIVL----QN-GAHEVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHH----HT-TCSEEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCChhHHHHHH----Hc-CCCEEEeCCCchHHHHHHHHcCCCCc
Confidence 3457899999876654455555543 3679999999998877664 34 544 333333444444432 269
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|.|| |+.-. ..++ .+..+++||.+|.
T Consensus 241 D~vi-~~~G~---~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 241 DIII-EMLAN---VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp EEEE-ESCHH---HHHHHHHHHEEEEEEEEE
T ss_pred EEEE-ECCCh---HHHHHHHHhccCCCEEEE
Confidence 9886 55432 2343 4566778887775
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.33 Score=42.73 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=57.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-++||-+|.+.|.+..++.+|.+ .+.+|+.+++++++.+.+++ . |.. +.....+..+.+.++ ..+|
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRM---AGAIPLVTAGSQKKLQMAEK----L-GAAAGFNYKKEDFSEATLKFTKGAGVN 233 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----c-CCcEEEecCChHHHHHHHHHhcCCCce
Confidence 447899999665654345455543 36799999999998877743 3 443 333333444444432 2699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.||-=+... .++ .+..+++||.+|.=.
T Consensus 234 ~vi~~~G~~----~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 234 LILDCIGGS----YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp EEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence 886444332 333 445667888887643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.92 E-value=0.6 Score=40.68 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=57.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDf 116 (223)
..-++||-+|.+ |.+..++.+|.+ .+.+|+.+++++++.+.+++ . |.. ++....|..+.+.++ ..+|+
T Consensus 163 ~~g~~VlV~GaG-~vG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~----l-Ga~~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 163 KPGEWVAIYGIG-GLGHVAVQYAKA---MGLNVVAVDIGDEKLELAKE----L-GADLVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp CTTCEEEEECCS-TTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----T-TCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH----C-CCCEEecCCCccHHHHHHHHhCCCCE
Confidence 345789999984 554456666654 36799999999998887764 4 654 222223433433332 47998
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|| |+.- ....++ .+..+++||.++.=
T Consensus 234 vi-d~~g--~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 234 AV-VTAV--SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EE-ESSC--CHHHHHHHHHHEEEEEEEEEC
T ss_pred EE-ECCC--CHHHHHHHHHHhhcCCEEEEe
Confidence 86 4432 223454 44566778877753
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.66 Score=33.77 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=48.8
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcC-ceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVG-WVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G-~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
..+|.-+|.|+...+.-+..+++. | +.+. ...++.+.+..+ .++|+|++|..-.. -.++++.++
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~-g~~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 82 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDAL-AIYDVR-VSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEAR 82 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHT-SSEEEE-EECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhc-CCeEEE-EeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHH
Confidence 458999999999999999999998 9 8755 667788888776 37999999975332 233444443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.33 Score=36.54 Aligned_cols=69 Identities=6% Similarity=0.090 Sum_probs=47.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~L--~~fDfVF 118 (223)
++|+=+|+ |+.++.++.... ..+-.++-+|.|++..+.+++ . | ++++.||+.+ .|.++ ..+|+|+
T Consensus 7 ~~v~I~G~--G~iG~~la~~L~--~~g~~V~~id~~~~~~~~~~~----~-~--~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 7 YEYIVIGS--EAAGVGLVRELT--AAGKKVLAVDKSKEKIELLED----E-G--FDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CSEEEECC--SHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH----T-T--CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CEEEEECC--CHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH----C-C--CcEEECCCCCHHHHHhCCcccCCEEE
Confidence 57898987 565666554433 335679999999987766553 3 4 4678899853 56543 5799998
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
+=..
T Consensus 76 ~~~~ 79 (141)
T 3llv_A 76 ITGS 79 (141)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8665
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.17 Score=40.08 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH---HHhcCC-CCccEEEEeCCCcccH
Q 027409 52 GGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE---EVMGEL-KGVDFLVVDCTSKDFA 127 (223)
Q Consensus 52 ~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~---evL~~L-~~fDfVFIDa~K~~Y~ 127 (223)
.|=++.++.||.+....+-++.-||.|++... ...+... ...+.++..+.. +.|..+ +.||+|+||+......
T Consensus 13 ~GKTt~a~~la~~la~~g~~vlliD~D~~~~~--~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~~~~~~~ 89 (206)
T 4dzz_A 13 SGKTTAVINIATALSRSGYNIAVVDTDPQMSL--TNWSKAG-KAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSV 89 (206)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH--HHHHTTS-CCSSEEEECCSHHHHHTHHHHTTTSSEEEEECCSSSSH
T ss_pred ccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH--HHHHhcC-CCCCcEEecCcHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 34333344444444444568999999987432 2333322 212556555432 233333 3799999999877754
Q ss_pred HHHHHhccCCCceEEEEeC
Q 027409 128 RVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 128 ~~f~~~~~l~~GgvIV~DN 146 (223)
.....+.. ...-+++++.
T Consensus 90 ~~~~~l~~-ad~viiv~~~ 107 (206)
T 4dzz_A 90 ITSAAVMV-SDLVIIPVTP 107 (206)
T ss_dssp HHHHHHHH-CSEEEEEECS
T ss_pred HHHHHHHH-CCEEEEEecC
Confidence 33333322 3334555544
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.83 Score=40.17 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--CC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--KG 113 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~~ 113 (223)
.-++||-+|+ .|.+..++.+|++. +. +|+.++.++++.+.|++ . |.. +.... .+..+.+.++ +.
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~---Ga~~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVA---GASRIIGVDINKDKFARAKE----F-GATECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHHH----H-TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH----c-CCceEeccccccccHHHHHHHHhCCC
Confidence 3468999996 46555666776653 55 89999999999888764 4 554 22211 2344445443 37
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCc-eEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKG-AVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~DNv 147 (223)
+|+|| |+.- -...++ .++.+++| |.+|.=..
T Consensus 261 ~D~vi-d~~g--~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSF-ECIG--NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEE-ECSC--CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEE-ECCC--cHHHHHHHHHhhccCCcEEEEEec
Confidence 99886 6542 233454 45777888 88875443
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.6 Score=31.66 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
...+|.-+|.|+...+.-+..+++. |+.|. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 74 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDA-GFHII-SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAIL 74 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHC-CeEEE-EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3568999999999999999999998 98854 456666655544 36999999987443 345555554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.41 Score=41.51 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=57.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC--CCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL--KGV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L--~~f 114 (223)
..-++||-+|++.|.+..++.+|.+ .+.+|+.++.++++.+.+++ +. |.. ++... .+..+.+.++ ..+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~---~G~~V~~~~~~~~~~~~~~~---~~-g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKM---MGCYVVGSAGSKEKVDLLKT---KF-GFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH---TS-CCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH---Hc-CCceEEecCCHHHHHHHHHHHhCCCC
Confidence 3457899999865654345455543 36799999999988777653 34 554 32222 1333444332 369
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|.|| |+.-. ..++ .+..+++||.+|.
T Consensus 227 d~vi-~~~g~---~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 227 DIYF-ENVGG---KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp EEEE-ESSCH---HHHHHHHTTEEEEEEEEE
T ss_pred cEEE-ECCCH---HHHHHHHHHHhcCCEEEE
Confidence 9886 44432 2454 4567788898875
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.46 Score=41.55 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=56.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
++||=.|.+.|.+..++.+|.+ .+. +|+.++.++++.+.+++. . |.. +.....+..+.+.++ +.+|.|
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~---~Ga~~Vi~~~~~~~~~~~~~~~---~-g~~~~~d~~~~~~~~~~~~~~~~~~d~v 234 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHF---LGCSRVVGICGTHEKCILLTSE---L-GFDAAINYKKDNVAEQLRESCPAGVDVY 234 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHT---S-CCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHH---CCCCeEEEEeCCHHHHHHHHHH---c-CCceEEecCchHHHHHHHHhcCCCCCEE
Confidence 7999999876754444455433 366 999999998877766542 3 544 333233444444332 269988
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|--+. . ..++ .+..+++||.+|.=
T Consensus 235 i~~~G-~---~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 235 FDNVG-G---NISDTVISQMNENSHIILC 259 (357)
T ss_dssp EESCC-H---HHHHHHHHTEEEEEEEEEC
T ss_pred EECCC-H---HHHHHHHHHhccCcEEEEE
Confidence 64443 2 4555 45677888988753
|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=90.68 E-value=2.4 Score=30.68 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=49.1
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEEEeCCCcc--cHHHHHHhccC
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTSKD--FARVLRFARFS 136 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K~~--Y~~~f~~~~~l 136 (223)
+..+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++..
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~ 85 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQL-GAEVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ 85 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999998 98754 456666666554 36999999986543 34555555433
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=90.67 E-value=1.2 Score=33.08 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=48.2
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.+++..++.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRL-GCNII-TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAK 75 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT-TCEEE-EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHc-CCeEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 458999999999999999999998 98855 556666666544 36999999986443 3455555543
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=90.58 E-value=1.5 Score=32.51 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=48.6
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~ 70 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELA-GFTVS-SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKIL 70 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc-CcEEE-EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 57899999999999999999998 99855 567778877776 37999999986443 344555554
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=90.58 E-value=1.1 Score=31.88 Aligned_cols=63 Identities=10% Similarity=0.208 Sum_probs=47.2
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
-+|.-+|.|+...+.-++.+++. |+.+. ...++.+.+..+ ..+|+||+|..-. +-.++++.++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~ 70 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEML-GFQAD-YVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLR 70 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHT-TEEEE-EESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHc-CCCEE-EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 47899999999999999999998 99744 346676666655 4799999998633 3345566554
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.47 E-value=1.1 Score=39.46 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=58.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCC---CCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGEL---KGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L---~~f 114 (223)
.-++||-+|+ .|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +. .. .|..+.+.++ ..+
T Consensus 189 ~g~~VlV~G~-G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~----l-Ga~~vi~-~~~~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 189 AGDRVVVQGT-GGVALFGLQIAKA---TGAEVIVTSSSREKLDRAFA----L-GADHGIN-RLEEDWVERVYALTGDRGA 258 (363)
T ss_dssp TTCEEEEESS-BHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHH----H-TCSEEEE-TTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHH---cCCEEEEEecCchhHHHHHH----c-CCCEEEc-CCcccHHHHHHHHhCCCCc
Confidence 4479999994 4665566666654 36799999999998887755 4 554 33 11 3444545443 279
Q ss_pred cEEEEeCCCcccHHHHHHhccCCCceEEEEeCCC
Q 027409 115 DFLVVDCTSKDFARVLRFARFSNKGAVLAFKNAF 148 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DNvl 148 (223)
|+||-=+....+. ..+..+++||.++.=...
T Consensus 259 D~vid~~g~~~~~---~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAGGAGLG---QSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEEEEETTSSCHH---HHHHHEEEEEEEEEECCC
T ss_pred eEEEECCChHHHH---HHHHHhhcCCEEEEEecC
Confidence 9887544432222 244556778887754443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.4 Score=41.90 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=57.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDf 116 (223)
.-++||=+|.+.|.+..++.+|.+ .+.+|+.++.++++.+.+++ . |.. +.. ..+..+.+.++ ..+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~-~~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKA---YGLRVITTASRNETIEWTKK----M-GADIVLNH-KESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH---TTCEEEEECCSHHHHHHHHH----H-TCSEEECT-TSCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHh----c-CCcEEEEC-CccHHHHHHHhCCCCccE
Confidence 457899996554654456566653 36799999999998888876 4 544 222 12444444443 36997
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
|| |+.- -...++ .+..+++||.+|.
T Consensus 221 v~-d~~g--~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 221 VF-CTFN--TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EE-ESSC--HHHHHHHHHHHEEEEEEEEE
T ss_pred EE-ECCC--chHHHHHHHHHhccCCEEEE
Confidence 76 5542 234454 4466688898874
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.52 Score=35.45 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=47.7
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
..+|.-+|.|+...+.-++.+++. |+.|. ...++.+.+..+ .+||+||+|..-. +-.++++.++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEET-GYQTE-HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC-CCEEE-EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999998 98853 446666665544 3799999998633 3345555553
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.46 Score=41.49 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=58.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
...-++||-+|.+.|.+..++.+|.+. .+.+|+.++.++++.+.+++ . |.. +.....+..+.+.++ +.
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~--~Ga~Vi~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKR----A-GADYVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----h-CCCEEecCCCccHHHHHHHHhcCCC
Confidence 334578999999856543555555432 15789999999998887754 3 544 332223333333322 36
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|.||--+.. ...++ .+..+++||.+|.=
T Consensus 241 ~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 241 VDAVIDLNNS---EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EEEEEESCCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred ceEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 9988744432 33555 45667888988763
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.7 Score=33.49 Aligned_cols=63 Identities=6% Similarity=-0.077 Sum_probs=46.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc-------ccHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK-------DFARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~-------~Y~~~f~~~~ 134 (223)
-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+|++|..-. .-.++++.++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~ 75 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNH-FSKVI-TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIK 75 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SSEEE-EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhC-CcEEE-EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHH
Confidence 47899999999999999999998 98854 456666666554 3799999998643 3345555554
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=90.37 E-value=1.8 Score=31.40 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=49.1
Q ss_pred CcEEEEEeCCchHHHHHHHHHHh-hcCceEEEEecchHHHhcCC---CCccEEEEeCCCc---ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYD-VVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTSK---DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K~---~Y~~~f~~~~ 134 (223)
..+|.-+|.|+...+.-+..+++ . |+.+. ...++.+.+..+ ..+|+|++|..-. +-.++++.++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~-~~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIG-EYDFI-EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHC-CCEEE-EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcc-CccEE-EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 45899999999999999999999 7 88855 677888877765 3699999998754 2344455443
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.77 Score=33.25 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc---ccHHHHHHhc
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK---DFARVLRFAR 134 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~---~Y~~~f~~~~ 134 (223)
..-+|.-+|.|+...+.-+..+++. |+.+.....++.+.+..+ ..+|+||+|..-. .-.++++.++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~ 78 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESL-GYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLA 78 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHC-CCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHH
Confidence 3468999999999999999999998 998655567777766655 3799999997642 3445555553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=90.29 E-value=1 Score=39.89 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=65.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
+..++|++-||+|- .++.+..+ |. .+..+|+|+...+..+.|+... . .||..++..+ +..+|+|+
T Consensus 10 ~~~~~~dLFaG~Gg--~~~g~~~a----G~~~v~~~e~d~~a~~t~~~N~~~~-~------~~Di~~~~~~~~~~~D~l~ 76 (327)
T 2c7p_A 10 TGLRFIDLFAGLGG--FRLALESC----GAECVYSNEWDKYAQEVYEMNFGEK-P------EGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTH--HHHHHHHT----TCEEEEEECCCHHHHHHHHHHHSCC-C------BSCGGGSCGGGSCCCSEEE
T ss_pred CCCcEEEECCCcCH--HHHHHHHC----CCeEEEEEeCCHHHHHHHHHHcCCC-C------cCCHHHcCHhhCCCCCEEE
Confidence 34689999999984 66666543 33 4778999999999999998766 2 5888886653 45799999
Q ss_pred Ee--------C-------CC--cccHHHHHHhccCCCceEEEEeCC
Q 027409 119 VD--------C-------TS--KDFARVLRFARFSNKGAVLAFKNA 147 (223)
Q Consensus 119 ID--------a-------~K--~~Y~~~f~~~~~l~~GgvIV~DNv 147 (223)
.+ | +. ..+.+|++.+..++|- +++..||
T Consensus 77 ~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV 121 (327)
T 2c7p_A 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENV 121 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEE
T ss_pred ECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc-EEEEeCc
Confidence 87 1 11 1345566666555664 6777887
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.22 E-value=2.2 Score=36.99 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=55.5
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc--CceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV--GWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~--G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|.=||+ |+.+++++...+.....+.|+-+|+|+++.+.....+.+.. ...+++..+|. + .+..-|+|++=+
T Consensus 2 kI~VIGa--G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~---a~~~aDvVIi~~ 75 (304)
T 2v6b_A 2 KVGVVGT--GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-S---ELADAQVVILTA 75 (304)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-G---GGTTCSEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-H---HhCCCCEEEEcC
Confidence 5777887 56678877766654333489999999887664333343330 11244444442 3 345789999987
Q ss_pred CCccc----------------HHHHHHhccCCCceEEE-EeC
Q 027409 122 TSKDF----------------ARVLRFARFSNKGAVLA-FKN 146 (223)
Q Consensus 122 ~K~~Y----------------~~~f~~~~~l~~GgvIV-~DN 146 (223)
...+. .++++.+....|+++|+ +-|
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 43221 44445444445777654 444
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=90.17 E-value=1.7 Score=31.50 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=48.2
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
.-+|.-+|.|+...+.-+..+++. |+.+ ....++.+.+..+ .+||+|++|..-. +-.++++.++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~-g~~v-~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKG-GFDS-DMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALR 73 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT-TCEE-EEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHC-CCeE-EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999998 9985 3456777766655 4799999998633 3345555554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.33 Score=42.39 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~f 114 (223)
.-++||-+|. .|.+..++.+|.+. +. +|+.++.++++.+.+++ . |.. +.....+..+.+.++ ..+
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~---Ga~~Vi~~~~~~~~~~~~~~----~-Ga~~~~~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKAS---GAYPVIVSEPSDFRRELAKK----V-GADYVINPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHT---TCCSEEEECSCHHHHHHHHH----H-TCSEEECTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHH----h-CCCEEECCCCcCHHHHHHHHcCCCCC
Confidence 3478999998 46555666666542 55 89999999998887764 4 544 222233445555443 269
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|+|| |+.- ....++ .++.+++||.+|.=
T Consensus 238 D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 238 DVFL-EFSG--APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEE-ECSC--CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEE-ECCC--CHHHHHHHHHHHhcCCEEEEE
Confidence 9986 5542 234454 44566788887753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.08 E-value=2.5 Score=35.16 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=58.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----c
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----G 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~ 109 (223)
..-|.+|=.|.+.|. +.+++...+. .+.+|+.++++++..+...+.+... |..+.++.+|..+ .+ .
T Consensus 9 l~~k~vlVTGas~gI-G~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 9 LTDKVVVISGVGPAL-GTTLARRCAE--QGADLVLAARTVERLEDVAKQVTDT-GRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTCEEEEESCCTTH-HHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHH-HHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999998774 5666655543 4779999999999999998888887 7778888887532 12 2
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 85 ~~g~id~lv~nAg 97 (264)
T 3ucx_A 85 AYGRVDVVINNAF 97 (264)
T ss_dssp HTSCCSEEEECCC
T ss_pred HcCCCcEEEECCC
Confidence 2357999998873
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.72 Score=34.75 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=47.6
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--C--CccEEEEeCCCc--ccHHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--K--GVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~--~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
+|.-+|.|+...+.-+..+++. |+.+.....++.+.+..+ . .+|+||+|..-. +-.++++.++
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr 106 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSE-GFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIM 106 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHH
Confidence 7999999999999999999998 998543667777666654 2 699999998633 3345555554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.65 Score=36.52 Aligned_cols=91 Identities=15% Similarity=0.048 Sum_probs=55.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCC-CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcC---CCCccE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHT-CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE---LKGVDF 116 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~-~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~---L~~fDf 116 (223)
.+|+=+|+ |..+..++ ...... +-.|+-+|.|++..+.++ +. |. +++.||+. +.|.+ +..+|+
T Consensus 40 ~~v~IiG~--G~~G~~~a--~~L~~~~g~~V~vid~~~~~~~~~~----~~-g~--~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 40 AQVLILGM--GRIGTGAY--DELRARYGKISLGIEIREEAAQQHR----SE-GR--NVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp CSEEEECC--SHHHHHHH--HHHHHHHCSCEEEEESCHHHHHHHH----HT-TC--CEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CcEEEECC--CHHHHHHH--HHHHhccCCeEEEEECCHHHHHHHH----HC-CC--CEEEcCCCCHHHHHhccCCCCCCE
Confidence 47998986 55445443 333333 457999999998766544 34 54 56778874 45654 457999
Q ss_pred EEEeCCCcc-cHHHHHHhccCCCceEEEE
Q 027409 117 LVVDCTSKD-FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~-Y~~~f~~~~~l~~GgvIV~ 144 (223)
|++=..... .......++.+.+...|++
T Consensus 109 vi~~~~~~~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 109 VLLAMPHHQGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 998543222 2233345566665666665
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.96 E-value=1.5 Score=37.43 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~ 110 (223)
+=|.+|=-|.+.|. +.+++.+.|. .+++|+.++++++..+...+.++.. |.++..+..|..+ ++.+
T Consensus 6 ~gKvalVTGas~GI-G~aiA~~la~--~Ga~Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 6 KNKVVIVTGAGSGI-GRAIAKKFAL--NDSIVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45778888888884 5666665553 4789999999999999999999988 8777777777531 2223
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 82 ~G~iDiLVNNAG 93 (254)
T 4fn4_A 82 YSRIDVLCNNAG 93 (254)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCc
Confidence 357999887764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.96 E-value=0.36 Score=44.06 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=59.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch-------------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA------------- 104 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA------------- 104 (223)
..-++||=+|.+.|.+..++.+|.+. +.+++.++.++++.+.+++ . |.. |.....|.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~---Ga~vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAG---GANPICVVSSPQKAEICRA----M-GAEAIIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHH----H-TCCEEEETTTTTCCSEEETTEECHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc---CCeEEEEECCHHHHHHHHh----h-CCcEEEecCcCcccccccccccchHH
Confidence 34568999998667655666776542 6788888899988887754 4 554 22211111
Q ss_pred ----HHHhcCC---CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 105 ----EEVMGEL---KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 105 ----~evL~~L---~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.+.+.++ ..+|+|| |+.-. ..++ .+..+++||.+|.=-
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvi-d~~G~---~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVF-EHPGR---ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEE-ECSCH---HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EcCCc---hhHHHHHHHhhCCcEEEEEe
Confidence 1334333 3799775 66533 3454 456678889888643
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=89.89 E-value=2.5 Score=30.07 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=46.5
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ .++|+|++|..-... .++++.++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr 69 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKE-GYEVH-CAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVR 69 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhC-CEEEE-EeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 47899999999999999999998 99854 356777766654 379999999874443 33444443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.78 E-value=3.8 Score=35.18 Aligned_cols=94 Identities=7% Similarity=0.017 Sum_probs=59.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceE---------E--EEecchHHHhc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVS---------E--VIVRQAEEVMG 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I---------~--li~GdA~evL~ 109 (223)
+..+|.=||+| ..++.++...+. .+-.|+-++++++..+..++.. |+.+ . ....|..+.+
T Consensus 3 ~~mki~iiG~G--~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (359)
T 1bg6_A 3 ESKTYAVLGLG--NGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRG----AIIAEGPGLAGTAHPDLLTSDIGLAV- 73 (359)
T ss_dssp -CCEEEEECCS--HHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHT----SEEEESSSCCEEECCSEEESCHHHHH-
T ss_pred CcCeEEEECCC--HHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcC----CeEEeccccccccccceecCCHHHHH-
Confidence 34689999984 555665544332 2457999999988776655432 2111 1 1234444444
Q ss_pred CCCCccEEEEeCCCcccHHHHHHhcc-CCCceEEEEe
Q 027409 110 ELKGVDFLVVDCTSKDFARVLRFARF-SNKGAVLAFK 145 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV~D 145 (223)
..+|+||+=....+..+.++.+.+ +++|.+||..
T Consensus 74 --~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 74 --KDADVILIVVPAIHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp --TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred --hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence 369999997766666777776654 5888888776
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.75 E-value=1.5 Score=32.50 Aligned_cols=69 Identities=19% Similarity=0.013 Sum_probs=49.8
Q ss_pred CCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC
Q 027409 67 HTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS 136 (223)
Q Consensus 67 ~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l 136 (223)
.+..+|.-+|.|+...+.-+..+++. |.. +-....++.+.+..+ ..+|+||+|..-. +-.++++.++..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLS-GSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHH-SSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhC-CCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999998 854 333567777766655 3799999997633 335556655433
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.67 E-value=1.1 Score=39.25 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=54.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcE-EEEEeCCchHHHHHHHHHHhhcCceEEEEecch--HHHhcCC----C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCAR-HVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA--EEVMGEL----K 112 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~-i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA--~evL~~L----~ 112 (223)
..-++||=+|.+.|.+..++.+|++. +++ |++++.+++. +.-++..++. |.. .++..+. .+.+.++ .
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~~~~-~~~~~~~~~l-Ga~-~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAAL---GLRTINVVRDRPDI-QKLSDRLKSL-GAE-HVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEECCCSCH-HHHHHHHHHT-TCS-EEEEHHHHHSGGGGGTTSSSC
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHc---CCEEEEEecCccch-HHHHHHHHhc-CCc-EEEecCcchHHHHHHHHhCCC
Confidence 34478999998666655777777653 454 5666665542 2222334455 765 2222211 1222222 2
Q ss_pred CccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 113 GVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
.+|+|| |+.-.. .....+..+++||.+|.=
T Consensus 240 ~~Dvvi-d~~g~~--~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 240 QPRLAL-NCVGGK--SSTELLRQLARGGTMVTY 269 (357)
T ss_dssp CCSEEE-ESSCHH--HHHHHHTTSCTTCEEEEC
T ss_pred CceEEE-ECCCcH--HHHHHHHhhCCCCEEEEE
Confidence 499775 775432 234566778889988764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.62 E-value=3.5 Score=35.28 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~evL~~L~~fDfVF 118 (223)
++.+|.=||+ |..+++++...+.....+.|+-+|+++++.+.....+.+...+ .+++...+-.+. +...|+||
T Consensus 6 ~~mkI~IiGa--G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~aD~Vi 80 (319)
T 1lld_A 6 KPTKLAVIGA--GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI---CRDADMVV 80 (319)
T ss_dssp -CCEEEEECC--SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG---GTTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHH---hCCCCEEE
Confidence 4568999998 5556776665544322238999999987765222222221011 234444411232 35799999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
+=..
T Consensus 81 i~v~ 84 (319)
T 1lld_A 81 ITAG 84 (319)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9774
|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=1.3 Score=30.96 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=45.9
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
+|.-+|.++...+.-+..+++. |+.+. ...++.+.+..+ ..+|+||+|..-.. -.++++.++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 68 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEE-GYEID-TAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIR 68 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-CCEEE-EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 6788999999999999999998 98855 566776666554 37999999986443 234455554
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=89.39 E-value=0.71 Score=33.22 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=46.6
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+|++|..-.. =.++++.++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~-g~~v~-~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~ 69 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKE-GYEVI-EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQ 69 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHC-CcEEE-EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHH
Confidence 37889999999999999999998 99854 557777766654 37999999986333 234555443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.83 Score=35.13 Aligned_cols=96 Identities=16% Similarity=0.073 Sum_probs=55.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcC--CCCc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE--LKGV 114 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~--L~~f 114 (223)
....++|+=+|+ |..++.++.. ....+.+|+-+|++++..+.+++ +. |. .++.||+. +.|.. +..+
T Consensus 16 ~~~~~~v~IiG~--G~iG~~la~~--L~~~g~~V~vid~~~~~~~~~~~---~~-g~--~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 16 KQKSKYIVIFGC--GRLGSLIANL--ASSSGHSVVVVDKNEYAFHRLNS---EF-SG--FTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp -CCCCEEEEECC--SHHHHHHHHH--HHHTTCEEEEEESCGGGGGGSCT---TC-CS--EEEESCTTSHHHHHTTTGGGC
T ss_pred ccCCCcEEEECC--CHHHHHHHHH--HHhCCCeEEEEECCHHHHHHHHh---cC-CC--cEEEecCCCHHHHHHcCcccC
Confidence 345678999996 5645554433 33345689999999987654331 33 44 46668763 45554 3579
Q ss_pred cEEEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 115 DFLVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
|+||+=.......... ..++.+.+...|++
T Consensus 86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 86 DMVFAFTNDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 9998866543333332 23444444444544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=2.4 Score=37.06 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=58.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH-HhcCCCCccEEEEeC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE-VMGELKGVDFLVVDC 121 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e-vL~~L~~fDfVFIDa 121 (223)
++|.=||+ |..+.+++.+........+|+-+|++++..+.++ +. |.. .-...+..+ .+ ...|+||+=.
T Consensus 34 ~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~-G~~-~~~~~~~~~~~~---~~aDvVilav 102 (314)
T 3ggo_A 34 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DL-GII-DEGTTSIAKVED---FSPDFVMLSS 102 (314)
T ss_dssp SEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HT-TSC-SEEESCTTGGGG---GCCSEEEECS
T ss_pred CEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HC-CCc-chhcCCHHHHhh---ccCCEEEEeC
Confidence 78999997 4566776655443322238999999998877664 34 552 112234333 33 3689999976
Q ss_pred CCcccHHHHHHhcc-CCCceEEEEeC
Q 027409 122 TSKDFARVLRFARF-SNKGAVLAFKN 146 (223)
Q Consensus 122 ~K~~Y~~~f~~~~~-l~~GgvIV~DN 146 (223)
-.....++++.+.+ +++|.+| +|.
T Consensus 103 p~~~~~~vl~~l~~~l~~~~iv-~d~ 127 (314)
T 3ggo_A 103 PVRTFREIAKKLSYILSEDATV-TDQ 127 (314)
T ss_dssp CGGGHHHHHHHHHHHSCTTCEE-EEC
T ss_pred CHHHHHHHHHHHhhccCCCcEE-EEC
Confidence 66666777776644 5777755 565
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=0.88 Score=39.53 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=61.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--G 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~ 113 (223)
...-.+||=+|+ .|.+..++.+|++. .+.+|+.++.++++.+.|++ . |.. +.. ..+..+.+.++ + .
T Consensus 169 ~~~g~~vlv~Ga-G~vG~~a~qla~~~--g~~~Vi~~~~~~~~~~~~~~----l-Ga~~~i~~-~~~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 169 LGPGSTAVVIGV-GGLGHVGIQILRAV--SAARVIAVDLDDDRLALARE----V-GADAAVKS-GAGAADAIRELTGGQG 239 (345)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHH--CCCEEEEEESCHHHHHHHHH----T-TCSEEEEC-STTHHHHHHHHHGGGC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH----c-CCCEEEcC-CCcHHHHHHHHhCCCC
Confidence 345578999997 46555677777654 24689999999998887764 4 655 332 22445555544 2 7
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
+|+|| |+.-. ...++ .+..+++||.++.=..
T Consensus 240 ~d~v~-d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 240 ATAVF-DFVGA--QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEEEE-ESSCC--HHHHHHHHHHEEEEEEEEECSC
T ss_pred CeEEE-ECCCC--HHHHHHHHHHHhcCCEEEEECC
Confidence 99876 54322 33454 4456677888876443
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=89.24 E-value=1.1 Score=32.87 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=49.1
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
..+|.-+|.|+...+.-+..+++. |+.|. ...++.+.+..+ ..+|+||+|..-. .-.++++.++
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 75 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQE-GFDII-QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLK 75 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHH-TEEEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHc-CCeEE-EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 468999999999999999999998 99855 567777766655 3799999998643 3345555554
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.18 E-value=3.3 Score=37.07 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=49.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhcCCCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~~L~~fDfV 117 (223)
+.++|.=||++ |+.+++++.+.+.......|+.+|+++++.+.-...+.+. ... +++ .+|-.+.+. .-|+|
T Consensus 7 ~~~KV~ViGaa-G~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~~~~~~i~~-t~d~~~al~---dADvV 80 (343)
T 3fi9_A 7 TEEKLTIVGAA-GMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-GFEGLNLTF-TSDIKEALT---DAKYI 80 (343)
T ss_dssp CSSEEEEETTT-SHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-CCTTCCCEE-ESCHHHHHT---TEEEE
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-cCCCCceEE-cCCHHHHhC---CCCEE
Confidence 45689999985 4456777655554433347999999998776555556665 322 443 345445454 68999
Q ss_pred EEeCC
Q 027409 118 VVDCT 122 (223)
Q Consensus 118 FIDa~ 122 (223)
|+=|.
T Consensus 81 vitaG 85 (343)
T 3fi9_A 81 VSSGG 85 (343)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99875
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=3.6 Score=36.48 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=51.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC---ceEEEEecchHHHhcCCCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG---WVSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G---~~I~li~GdA~evL~~L~~fDf 116 (223)
.++.+|.=||+ |+.+++++.+.+..+--+.|+.+|+++++.+.-...+.+.+. ..+++..+|. + .+..-|+
T Consensus 3 ~~~~kI~ViGa--G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~-~---a~~~aDv 76 (326)
T 3pqe_A 3 KHVNKVALIGA--GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY-E---DCKDADI 76 (326)
T ss_dssp CSCCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG-G---GGTTCSE
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH-H---HhCCCCE
Confidence 35678999995 677888877666543335899999999877654444554311 2266666664 2 2457899
Q ss_pred EEEeCC
Q 027409 117 LVVDCT 122 (223)
Q Consensus 117 VFIDa~ 122 (223)
|||=+.
T Consensus 77 Vvi~ag 82 (326)
T 3pqe_A 77 VCICAG 82 (326)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999874
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=89.14 E-value=1.4 Score=31.82 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=47.1
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFE-GYEVE-IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAH 70 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHC-CceEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHH
Confidence 47899999999999999999998 98855 567777766654 37999999976432 344555554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.12 E-value=2.2 Score=37.08 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=59.0
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
+...-++||-+|++ |.+..++.+|++. +.+|+.++.++++.+.|++ . |.. .++ .+. +.+.+ .+|+|
T Consensus 173 ~~~~g~~VlV~GaG-~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~----l-Ga~-~v~-~~~-~~~~~--~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFG-GLGSMAVKYAVAM---GAEVSVFARNEHKKQDALS----M-GVK-HFY-TDP-KQCKE--ELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCS-HHHHHHHHHHHHT---TCEEEEECSSSTTHHHHHH----T-TCS-EEE-SSG-GGCCS--CEEEE
T ss_pred CCCCCCEEEEECCc-HHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHh----c-CCC-eec-CCH-HHHhc--CCCEE
Confidence 34456789999974 5544666676543 6799999999999887764 4 665 222 343 23333 79988
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
| |+.-.. ..++ .+..+++||.++.=..
T Consensus 239 i-d~~g~~--~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 239 I-STIPTH--YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp E-ECCCSC--CCHHHHHTTEEEEEEEEECCC
T ss_pred E-ECCCcH--HHHHHHHHHHhcCCEEEEECC
Confidence 7 554332 1233 4466688888886433
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.07 E-value=1 Score=38.06 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=35.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW 95 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~ 95 (223)
..-..||+..||.|. .+++ | ...+-+.+.+|++++..+.|+++++.. ++
T Consensus 211 ~~~~~vlD~f~GsGt--t~~~-a---~~~gr~~ig~e~~~~~~~~~~~r~~~~-~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGT--TAIV-A---KKLGRNFIGCDMNAEYVNQANFVLNQL-EI 259 (260)
T ss_dssp CTTCEEEESSCTTCH--HHHH-H---HHTTCEEEEEESCHHHHHHHHHHHHC----
T ss_pred CCCCEEEECCCCCCH--HHHH-H---HHcCCeEEEEeCCHHHHHHHHHHHHhc-cC
Confidence 345689999999884 3322 2 123568999999999999999999987 54
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=89.06 E-value=1.8 Score=31.56 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=48.5
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..+++. |.. .-....++.+.+..+ .++|+||+|..-.. -.++++.++.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRK-DIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRK 75 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHT-TCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999998 887 334556666666554 37999999986433 3455555543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=4.1 Score=35.54 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=50.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHHhcCCCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~evL~~L~~fDf 116 (223)
.++++|.=||+ |..+++++++.+.....+.|+-+|+|+++.+.-..-+.++ .+..+++..++. + .+..-|+
T Consensus 4 ~~~~kI~IIGa--G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~-~---al~~aDv 77 (316)
T 1ldn_A 4 NGGARVVVIGA--GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-D---DCRDADL 77 (316)
T ss_dssp TTSCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-G---GTTTCSE
T ss_pred CCCCEEEEECc--CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH-H---HhCCCCE
Confidence 35678999997 5567888777655443468999999998655422334433 111355555442 2 3557999
Q ss_pred EEEeCCCcc
Q 027409 117 LVVDCTSKD 125 (223)
Q Consensus 117 VFIDa~K~~ 125 (223)
|++=+...+
T Consensus 78 Viia~~~~~ 86 (316)
T 1ldn_A 78 VVICAGANQ 86 (316)
T ss_dssp EEECCSCCC
T ss_pred EEEcCCCCC
Confidence 999865443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.89 Score=42.97 Aligned_cols=93 Identities=8% Similarity=0.004 Sum_probs=66.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC-----------CcEEEEEeCCchHHHHHHHHHHhhc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT-----------CARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~-----------~g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
-++++.+|+.-++.-..-.+|++-.||+|- .-+..+...... ...++.+|+|+..+..|+-|+.-.
T Consensus 201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGg--fL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh- 277 (530)
T 3ufb_A 201 TPRPVVRFMVEVMDPQLGESVLDPACGTGG--FLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH- 277 (530)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTTH--HHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHhhccCCCCEEEeCCCCcch--HHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc-
Confidence 355688888887776666799999999984 222222111111 246999999999999999998877
Q ss_pred Cce-EEEEecchHHH-hcCC---CCccEEEEe
Q 027409 94 GWV-SEVIVRQAEEV-MGEL---KGVDFLVVD 120 (223)
Q Consensus 94 G~~-I~li~GdA~ev-L~~L---~~fDfVFID 120 (223)
|.. -.+..||++.. +... ..||+|+-.
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~N 309 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTN 309 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred CCccccccccccccCchhhhcccccceEEEec
Confidence 877 78889998752 2222 369999975
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.59 Score=42.05 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=52.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
...++|+=||+| -.+..++. .+..-+.+|+.+|+++++.+.+++.+ |..+.....+..+ +.+ +...|+|+
T Consensus 166 l~g~~V~ViG~G--~iG~~~a~--~a~~~Ga~V~~~d~~~~~l~~~~~~~----g~~~~~~~~~~~~-l~~~l~~aDvVi 236 (377)
T 2vhw_A 166 VEPADVVVIGAG--TAGYNAAR--IANGMGATVTVLDINIDKLRQLDAEF----CGRIHTRYSSAYE-LEGAVKRADLVI 236 (377)
T ss_dssp BCCCEEEEECCS--HHHHHHHH--HHHHTTCEEEEEESCHHHHHHHHHHT----TTSSEEEECCHHH-HHHHHHHCSEEE
T ss_pred CCCCEEEEECCC--HHHHHHHH--HHHhCCCEEEEEeCCHHHHHHHHHhc----CCeeEeccCCHHH-HHHHHcCCCEEE
Confidence 568999999984 33444332 22234679999999998877766433 3332222222211 222 24689988
Q ss_pred EeCC-Cc-ccHHH-H-HHhccCCCceEEE
Q 027409 119 VDCT-SK-DFARV-L-RFARFSNKGAVLA 143 (223)
Q Consensus 119 IDa~-K~-~Y~~~-f-~~~~~l~~GgvIV 143 (223)
.=+- .. ..+.+ . +.+..+++||+||
T Consensus 237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV 265 (377)
T 2vhw_A 237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLV 265 (377)
T ss_dssp ECCCCTTSCCCCCBCHHHHTTSCTTCEEE
T ss_pred ECCCcCCCCCcceecHHHHhcCCCCcEEE
Confidence 7321 11 12222 2 2445668888876
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.78 E-value=1.3 Score=31.44 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=43.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcC-CCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE-LKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~-L~~fDfVF 118 (223)
++|+=+|+ |+.++.++..... .+ -+|+.++++++..+..+ .. |. +++.+|.. +.+.+ +..+|.||
T Consensus 6 ~~v~I~G~--G~iG~~~~~~l~~--~g~~~v~~~~r~~~~~~~~~----~~-~~--~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 6 WNICVVGA--GKIGQMIAALLKT--SSNYSVTVADHDLAALAVLN----RM-GV--ATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp EEEEEECC--SHHHHHHHHHHHH--CSSEEEEEEESCHHHHHHHH----TT-TC--EEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CeEEEECC--CHHHHHHHHHHHh--CCCceEEEEeCCHHHHHHHH----hC-CC--cEEEecCCCHHHHHHHHcCCCEEE
Confidence 58999998 6666665544332 34 57999999998766554 34 44 44555543 23332 46799988
Q ss_pred EeC
Q 027409 119 VDC 121 (223)
Q Consensus 119 IDa 121 (223)
.=+
T Consensus 75 ~~~ 77 (118)
T 3ic5_A 75 SAA 77 (118)
T ss_dssp ECS
T ss_pred ECC
Confidence 655
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.68 E-value=0.86 Score=39.67 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=58.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe----cchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV----RQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~----GdA~evL~~L~~fDf 116 (223)
.-++||-+|. .|.+..++.+|++.. ++.+|+.++.++++.+.+++ . |.. .++. .|..+.+..-..+|+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~-~Ga~Vi~~~~~~~~~~~~~~----l-Ga~-~vi~~~~~~~~~~~~~~g~g~D~ 241 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALM-KNITIVGISRSKKHRDFALE----L-GAD-YVSEMKDAESLINKLTDGLGASI 241 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHC-TTCEEEEECSCHHHHHHHHH----H-TCS-EEECHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHH----h-CCC-EEeccccchHHHHHhhcCCCccE
Confidence 5589999998 466556667776531 25789999999998887765 4 543 2222 222223332127998
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|| |+.-. ...++ .+..+++||.+|.=
T Consensus 242 vi-d~~g~--~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 242 AI-DLVGT--EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EE-ESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred EE-ECCCC--hHHHHHHHHHhhcCCEEEEe
Confidence 86 55422 33444 44666788888763
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.68 E-value=3.2 Score=30.22 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=53.6
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcC--CCCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE--LKGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~--L~~fDfVF 118 (223)
.+|+=+|+ |..++.++.... ..+-.|+-+|++++..+..++ +. | ++++.||+. +.+.. +..+|+||
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~--~~g~~v~~~d~~~~~~~~~~~---~~-~--~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EI-D--ALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HC-S--SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECC--CHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---hc-C--cEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 47888886 665555544332 335689999999886654432 23 4 356778763 34432 46799999
Q ss_pred EeCCCcccHHHH-HHhccCCCceEEE
Q 027409 119 VDCTSKDFARVL-RFARFSNKGAVLA 143 (223)
Q Consensus 119 IDa~K~~Y~~~f-~~~~~l~~GgvIV 143 (223)
+=.........+ ..++.++++-+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ii~ 100 (140)
T 1lss_A 75 AVTGKEEVNLMSSLLAKSYGINKTIA 100 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred EeeCCchHHHHHHHHHHHcCCCEEEE
Confidence 876443332222 3444455555554
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=2.1 Score=36.01 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=56.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------Hhc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMG 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~ 109 (223)
.+-|.||=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ +..
T Consensus 20 l~~k~vlVTGas~g-IG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 20 QDSEVALVTGATSG-IGLEIARRLGK--EGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp TTSCEEEEETCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 34588999998866 45666555443 4678999999999888877778776 7667788887532 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.++++|.++.-|.
T Consensus 96 ~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 96 RYGPVDVLVNNAG 108 (277)
T ss_dssp HTCSCSEEEECCC
T ss_pred HhCCCCEEEECCC
Confidence 2357999988775
|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A | Back alignment and structure |
|---|
Probab=88.58 E-value=1.3 Score=31.09 Aligned_cols=73 Identities=7% Similarity=0.088 Sum_probs=51.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc---ccHHHHHHhccC---CCceE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK---DFARVLRFARFS---NKGAV 141 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~---~Y~~~f~~~~~l---~~Ggv 141 (223)
-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+|++|..-. .-.++++.++.. +.--+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGR-GFTVD-ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH-TCEEE-EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CceEE-EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 47999999999999999999998 99854 556666666554 3799999998644 334556655422 33345
Q ss_pred EEE
Q 027409 142 LAF 144 (223)
Q Consensus 142 IV~ 144 (223)
|+.
T Consensus 84 i~~ 86 (127)
T 2gkg_A 84 VII 86 (127)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=88.50 E-value=0.96 Score=36.73 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=41.0
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCCc
Q 027409 51 HGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTSK 124 (223)
Q Consensus 51 ~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K~ 124 (223)
|.|=++.++.||.+....+ ++.-||.|++. -+...+... .+..+++.++.++.+. +.||+|+||+...
T Consensus 11 GvGKTT~a~~LA~~la~~g-~VlliD~D~q~--~~~~~~~~~-~l~~~vi~~~~l~~l~--~~yD~viiD~p~~ 78 (209)
T 3cwq_A 11 GVGKTTTAVHLSAYLALQG-ETLLIDGDPNR--SATGWGKRG-SLPFKVVDERQAAKYA--PKYQNIVIDTQAR 78 (209)
T ss_dssp TSSHHHHHHHHHHHHHTTS-CEEEEEECTTC--HHHHHHHHS-CCSSEEEEGGGHHHHG--GGCSEEEEEEECC
T ss_pred CCcHHHHHHHHHHHHHhcC-CEEEEECCCCC--CHHHHhcCC-CCCcceeCHHHHHHhh--hcCCEEEEeCCCC
Confidence 3444444555555444556 99999999874 222333322 2223566666555543 4799999999776
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=88.25 E-value=3.1 Score=29.89 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=47.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHh-hcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYD-VVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..+++ . |+.+-....++.+.+..+ ..+|+||+|..-. .-.++++.++.
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLF-PYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHC-TTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhcc-CccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHh
Confidence 46899999999999999999998 7 888333456666666554 3799999998643 33455665543
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
Probab=88.19 E-value=2.2 Score=31.16 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=47.1
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEEEeCCC---cccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTS---KDFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K---~~Y~~~f~~~~ 134 (223)
+-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+||+|..- ..-.++++.++
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKY-GYTVE-IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQ 74 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHc-CCEEE-EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHH
Confidence 358999999999999999999998 99854 455666555543 379999999864 34455665554
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=88.19 E-value=1.5 Score=30.76 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=46.6
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.++...+.-+..++.. |+.+.....++.+.+..+ ..+|+||+|..-.. -.++++.++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~-g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~ 70 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKA-GYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIM 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhc-CcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 47888999999999999999988 987444566776666554 37999999986432 234555543
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=3.2 Score=29.49 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=50.5
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC-CCceEEE
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS-NKGAVLA 143 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l-~~GgvIV 143 (223)
+.+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-. .-.++++.++.. +.--+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMN-GFAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC-CcEEE-EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 357999999999999999999998 98854 456666666544 3699999998643 234455555433 2223444
Q ss_pred E
Q 027409 144 F 144 (223)
Q Consensus 144 ~ 144 (223)
.
T Consensus 81 ~ 81 (126)
T 1dbw_A 81 I 81 (126)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.89 Score=40.55 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=52.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVF 118 (223)
.++++|+=+|+| + .+..++. .+...+.+|+.+|+++++.+.+++. . |..+.....+..+ +.+ +..+|+|+
T Consensus 164 l~~~~V~ViGaG-~-iG~~~a~--~l~~~Ga~V~~~d~~~~~~~~~~~~---~-g~~~~~~~~~~~~-l~~~~~~~DvVi 234 (369)
T 2eez_A 164 VAPASVVILGGG-T-VGTNAAK--IALGMGAQVTILDVNHKRLQYLDDV---F-GGRVITLTATEAN-IKKSVQHADLLI 234 (369)
T ss_dssp BCCCEEEEECCS-H-HHHHHHH--HHHHTTCEEEEEESCHHHHHHHHHH---T-TTSEEEEECCHHH-HHHHHHHCSEEE
T ss_pred CCCCEEEEECCC-H-HHHHHHH--HHHhCCCEEEEEECCHHHHHHHHHh---c-CceEEEecCCHHH-HHHHHhCCCEEE
Confidence 567999999983 4 3443332 2233467999999999877766543 3 4333333333222 222 24689995
Q ss_pred EeCCCcc---cHHH-H-HHhccCCCceEEEE
Q 027409 119 VDCTSKD---FARV-L-RFARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~---Y~~~-f-~~~~~l~~GgvIV~ 144 (223)
. +.... -+.+ . +.+..+++||+||.
T Consensus 235 ~-~~g~~~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 235 G-AVLVPGAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp E-CCC-------CCSCHHHHTTSCTTCEEEE
T ss_pred E-CCCCCccccchhHHHHHHHhhcCCCEEEE
Confidence 5 54321 1111 2 24455688888764
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=87.93 E-value=0.93 Score=31.21 Aligned_cols=63 Identities=6% Similarity=0.113 Sum_probs=46.5
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-. .-.++++.++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~ 68 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAA-GFKVI-WLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLR 68 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhC-CcEEE-EecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 47888999999999999999998 99854 356666666555 3799999998643 3345555553
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.92 E-value=2.7 Score=34.19 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=57.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H----h----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V----M----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v----L----~~ 110 (223)
+-|.+|=.|.+.| .+++++...+. .+.+|+.++++++..+...+.+++. |..++++..|..+ . + ..
T Consensus 4 ~~k~vlITGas~g-IG~~~a~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 4 NEKVALVTGASRG-IGFEVAHALAS--KGATVVGTATSQASAEKFENSMKEK-GFKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578898898866 45666555443 4789999999999999888888887 7778888888642 1 1 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
.+++|.++.-|.
T Consensus 80 ~~~id~li~~Ag 91 (247)
T 3lyl_A 80 NLAIDILVNNAG 91 (247)
T ss_dssp TCCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 347899998875
|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=87.90 E-value=2.2 Score=31.10 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=51.2
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhccCCCceEEEE
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~l~~GgvIV~ 144 (223)
..+|.-+|.++...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++....--+|+.
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEK-GISID-LAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 458999999999999999999988 98854 567777766554 37999999986432 3445555543322334444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.84 E-value=0.57 Score=40.43 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEecchHHHhcCCC--CccEEEEeC
Q 027409 97 SEVIVRQAEEVMGELK--GVDFLVVDC 121 (223)
Q Consensus 97 I~li~GdA~evL~~L~--~fDfVFIDa 121 (223)
++++.||++++|+.+. .||+||.|-
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdP 48 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSP 48 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECC
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECC
Confidence 7999999999999883 799999994
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=87.77 E-value=1.4 Score=32.61 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=47.5
Q ss_pred CcEEEEEeCCchHHHHHHHHHHh-hcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYD-VVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
.-+|.-+|.|+...+.-+..+++ . |+.+.....++.+.+..+ ..+|+|++|..-. .-.++++.++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~-~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~ 74 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRP-GYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIR 74 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTST-TEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCC-CcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 35799999999999999999988 6 877544567776666544 3699999998644 3345555554
|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E | Back alignment and structure |
|---|
Probab=87.72 E-value=1.8 Score=30.67 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=46.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKE-GYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHC-CcEEE-EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 47899999999999999999998 98854 566766666654 37999999986443 244555554
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.64 E-value=2 Score=35.59 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
+-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |-.+.++.+|..+ .+.+
T Consensus 11 ~~k~vlVTGas~g-IG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 11 NDAVAIVTGAAAG-IGRAIAGTFAK--AGASVVVTDLKSEGAEAVAAAIRQA-GGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TTCEEEECSCSSH-HHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999998877 45666555443 3778999999999999988888887 7668888887642 1222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 87 ~g~id~lv~nAg 98 (256)
T 3gaf_A 87 FGKITVLVNNAG 98 (256)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 247999998775
|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A | Back alignment and structure |
|---|
Probab=87.58 E-value=2.2 Score=30.16 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=47.2
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC--CccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK--GVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~--~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.++...+.-+..++.. |+.+. ...++.+.+..+. .+|+|++|..-.. -.+++..++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~-g~~v~-~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 69 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQN-GFQPV-EAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLR 69 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHC-CceEE-EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 36888999999999999999998 98854 4677777777663 6999999985432 244555554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.18 Score=44.68 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCC-CCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 25 KESGVAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARH-TCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 25 i~p~~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~-~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
.+...-.++.+.-+- ....+||++|||.|- |.-.|+.. .-..++.+++.......+.. ++.. |.. +.+.
T Consensus 72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGG-----WsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~-g~~ii~~~ 144 (282)
T 3gcz_A 72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGRGG-----WSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTL-GWNLIRFK 144 (282)
T ss_dssp SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCH-----HHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBT-TGGGEEEE
T ss_pred ecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCH-----HHHHHHHhcCCCeeeeEEeccCccccccc-cccC-CCceEEee
Confidence 556666666655543 355699999999994 33323322 23467888886543332321 1223 555 6666
Q ss_pred ec-chHHHhcCCCCccEEEEeCCCc-------ccH--HHHHHh-ccCCCc--eEEEEeCCCC
Q 027409 101 VR-QAEEVMGELKGVDFLVVDCTSK-------DFA--RVLRFA-RFSNKG--AVLAFKNAFQ 149 (223)
Q Consensus 101 ~G-dA~evL~~L~~fDfVFIDa~K~-------~Y~--~~f~~~-~~l~~G--gvIV~DNvl~ 149 (223)
.+ |..+ ++. .++|+|+-|.+.. +|. .+++.+ ..|+|| |..|+ -+|.
T Consensus 145 ~~~dv~~-l~~-~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~-KvF~ 203 (282)
T 3gcz_A 145 DKTDVFN-MEV-IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI-KVLC 203 (282)
T ss_dssp CSCCGGG-SCC-CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE-EESC
T ss_pred CCcchhh-cCC-CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE-EEec
Confidence 55 3221 211 4899999998755 222 234433 456888 99888 4555
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=87.49 E-value=4.1 Score=29.48 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=50.0
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccCCCce-EEE
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFSNKGA-VLA 143 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l~~Gg-vIV 143 (223)
.-+|.-+|.|+...+.-+..+++..|+.+--...++.+.+..+ ..+|+|++|..-. .-.++++.++...+.. +|+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 3589999999999999999998752555333456776666554 3799999998643 3345556565443443 443
Q ss_pred E
Q 027409 144 F 144 (223)
Q Consensus 144 ~ 144 (223)
.
T Consensus 89 ~ 89 (143)
T 2qv0_A 89 I 89 (143)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.46 E-value=2.6 Score=36.15 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=54.7
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCcc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fD 115 (223)
+...-++||=+|-+.|.+..++.+|.+. +.+++.+.. +++.+.+ ++. |.. +.....| .....+..+|
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~---Ga~vi~~~~-~~~~~~~----~~l-Ga~~~i~~~~~~--~~~~~~~g~D 217 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK---GTTVITTAS-KRNHAFL----KAL-GAEQCINYHEED--FLLAISTPVD 217 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEEC-HHHHHHH----HHH-TCSEEEETTTSC--HHHHCCSCEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc---CCEEEEEec-cchHHHH----HHc-CCCEEEeCCCcc--hhhhhccCCC
Confidence 3445578998874446555666776543 678888874 4444444 445 765 3322223 1333346799
Q ss_pred EEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+|| |+--.. ..-..++.+++||.++.=
T Consensus 218 ~v~-d~~g~~--~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVI-DLVGGD--VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEE-ESSCHH--HHHHHGGGEEEEEEEEEC
T ss_pred EEE-ECCCcH--HHHHHHHhccCCCEEEEe
Confidence 776 554332 223355777889988853
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=87.15 E-value=2.4 Score=35.75 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=57.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
++..+|.=||+ |..+++++...+....+-.|+..|++++..+.+++ . |.... ...+..+.+ ...|+||+
T Consensus 4 M~~~~I~iIG~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~-g~~~~-~~~~~~~~~---~~aDvVil 72 (290)
T 3b1f_A 4 MEEKTIYIAGL--GLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----R-GIVDE-ATADFKVFA---ALADVIIL 72 (290)
T ss_dssp GCCCEEEEECC--SHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----T-TSCSE-EESCTTTTG---GGCSEEEE
T ss_pred cccceEEEEee--CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----c-CCccc-ccCCHHHhh---cCCCEEEE
Confidence 34578999997 45566665554432224579999999887765543 4 55211 122322222 46899999
Q ss_pred eCCCcccHHHHHHhc-c-CCCceEEE
Q 027409 120 DCTSKDFARVLRFAR-F-SNKGAVLA 143 (223)
Q Consensus 120 Da~K~~Y~~~f~~~~-~-l~~GgvIV 143 (223)
=.-.....++++.+. . +++|.+|+
T Consensus 73 avp~~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 73 AVPIKKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp CSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 876666677777654 4 67777666
|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} | Back alignment and structure |
|---|
Probab=87.12 E-value=2.2 Score=30.34 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=46.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--C-CccEEEEeCCCc---ccHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--K-GVDFLVVDCTSK---DFARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~-~fDfVFIDa~K~---~Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..++.. |+.+.. ..++.+.+..+ . .+|+|++|..-. .-.++++.++.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~-~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDA-GFLVTA-VSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVARE 75 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHT-TCEEEE-ESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHc-CCEEEE-ECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHh
Confidence 357999999999999999999988 998543 56666655443 3 799999998643 33455665543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=87.11 E-value=1.4 Score=39.76 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=57.7
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecch-------------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQA------------- 104 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA------------- 104 (223)
..-++||=+|.+.|.+..++.+|.+ .+.+++.++.++++.+.+++ . |.. +.....|.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~---~Ga~vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKN---GGGIPVAVVSSAQKEAAVRA----L-GCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----T-TCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHh----c-CCCEEEecccccccccccccccccch
Confidence 3457899999866665466666654 36788888899988887753 4 654 22211110
Q ss_pred -----HHHhcCC--CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 105 -----EEVMGEL--KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 105 -----~evL~~L--~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
.+.+.++ ..+|+|| |+.-. ..++ .+..+++||.||.=.
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvi-d~~G~---~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVF-EHTGR---VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEE-ECSCH---HHHHHHHHHSCTTCEEEESC
T ss_pred hhhHHHHHHHHHhCCCceEEE-ECCCc---hHHHHHHHHHhcCCEEEEEe
Confidence 2223322 3699886 55433 3454 456678888887643
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=86.96 E-value=3 Score=34.44 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=54.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecch----H----HHhc--
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQA----E----EVMG-- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA----~----evL~-- 109 (223)
+-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+.+.+.+... +- .+.++..|. . +.+.
T Consensus 11 ~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 11 NDRIILVTGASDG-IGREAAMTYAR--YGATVILLGRNEEKLRQVASHINEE-TGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHH-HSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhh-cCCCceEEEEecccCCHHHHHHHHHHH
Confidence 4578999998876 45666555443 4789999999999988888888766 44 367777776 1 1222
Q ss_pred --CCCCccEEEEeCC
Q 027409 110 --ELKGVDFLVVDCT 122 (223)
Q Consensus 110 --~L~~fDfVFIDa~ 122 (223)
.+++.|.++.-|.
T Consensus 87 ~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHCSCCSEEEECCC
T ss_pred HHhCCCCCEEEECCc
Confidence 2347999998775
|
| >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A | Back alignment and structure |
|---|
Probab=86.95 E-value=2 Score=36.79 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=45.9
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK 124 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~ 124 (223)
...+|.-+|.|+......+..+++. |+.|.-...|+.+.|..+ .+||+|++|..-.
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~-g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MP 216 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVREL-GHDVTDIAATRGEALEAVTRRTPGLVLADIQLA 216 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHCCCSEEEEESCCT
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhcc-CceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCC
Confidence 3568999999999999999999999 998654567777777665 3799999998643
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.90 E-value=3.1 Score=34.70 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=56.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG---- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~---- 109 (223)
..-|+||=.|.+.| .+..++...+. .+.+|+.++++++..+...+.++.. |-.++++.+|..+ .+.
T Consensus 29 l~~k~vlITGasgg-IG~~la~~L~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 29 VTGEIVLITGAGHG-IGRLTAYEFAK--LKSKLVLWDINKHGLEETAAKCKGL-GAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHH--CCCEEEEEEcCHHHHHHHHHHHHhc-CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 34588999998866 45665554443 4678999999998888877778776 6668888888542 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
.++++|.|+.-|.
T Consensus 105 ~~g~iD~li~~Ag 117 (272)
T 1yb1_A 105 EIGDVSILVNNAG 117 (272)
T ss_dssp HTCCCSEEEECCC
T ss_pred HCCCCcEEEECCC
Confidence 2347999998775
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=86.90 E-value=2.2 Score=31.04 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=44.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC----CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL----KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L----~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+||+|..-.. -.++++.++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~-g~~v~-~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~ 72 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEID-GNEVL-TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIK 72 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 47899999999999999999998 98743 444554444332 37999999986433 345555554
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=86.83 E-value=3.2 Score=30.61 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=45.7
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS 136 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l 136 (223)
-+|.-+|.|+...+.-+..+++. |.. .-....++.+.+..+ ..+|+||+|..-. .-.++++.++..
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 91 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQ-PDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSE 91 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 37999999999999999999987 633 233456666665544 3799999998643 334555555433
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=86.82 E-value=2.8 Score=35.38 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=57.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H----hcC---
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V----MGE--- 110 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v----L~~--- 110 (223)
..-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ . +.+
T Consensus 30 l~gk~~lVTGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 30 LSGKRALITGASTG-IGKKVALAYAE--AGAQVAVAARHSDALQVVADEIAGV-GGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CTTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35589999998877 45666555443 4789999999999999888888887 7667777777632 2 222
Q ss_pred -CCCccEEEEeCC
Q 027409 111 -LKGVDFLVVDCT 122 (223)
Q Consensus 111 -L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 106 ~~g~iD~lvnnAg 118 (276)
T 3r1i_A 106 ELGGIDIAVCNAG 118 (276)
T ss_dssp HHSCCSEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 247999998775
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.76 E-value=3.7 Score=34.13 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=56.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC------------chHHHHHHHHHHhhcCceEEEEecchHH-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD------------ERSRLAYVKAMYDVVGWVSEVIVRQAEE- 106 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d------------~e~~~~Ar~~~~~a~G~~I~li~GdA~e- 106 (223)
..-|.+|=.|.+.| ++.+++...+ ..+.+|+.++++ ++..+...+.++.. |..+.++.+|..+
T Consensus 11 l~gk~vlVTGas~g-IG~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~ 86 (278)
T 3sx2_A 11 LTGKVAFITGAARG-QGRAHAVRLA--ADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-GSRIVARQADVRDR 86 (278)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHH--HTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-TCCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHH--HCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-CCeEEEEeCCCCCH
Confidence 34588999998877 4566655544 347899999987 67777777777777 7668888888532
Q ss_pred -----Hhc----CCCCccEEEEeCCC
Q 027409 107 -----VMG----ELKGVDFLVVDCTS 123 (223)
Q Consensus 107 -----vL~----~L~~fDfVFIDa~K 123 (223)
.+. +++..|.++.-|.-
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 222 22479999988753
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=7 Score=34.67 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfVF 118 (223)
+.++|.=||+ |..+++++.+.+..+--+.|+-+|+++++.+--..-+.+...+ . +++..+|.. .+..-|+|+
T Consensus 8 ~~~kV~ViGa--G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~----a~~~aDiVv 81 (326)
T 3vku_A 8 DHQKVILVGD--GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYS----DAKDADLVV 81 (326)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGG----GGTTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHH----HhcCCCEEE
Confidence 5578999995 6677888777665444458999999988776555556654122 2 666666532 245789999
Q ss_pred EeCCC
Q 027409 119 VDCTS 123 (223)
Q Consensus 119 IDa~K 123 (223)
+=|..
T Consensus 82 i~ag~ 86 (326)
T 3vku_A 82 ITAGA 86 (326)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 97653
|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A | Back alignment and structure |
|---|
Probab=86.70 E-value=3.4 Score=32.27 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=48.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~ 135 (223)
..+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-. +-.++++.++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~ 72 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSA-GFEVE-TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTA 72 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC-CceEE-EcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 458999999999999999999998 98855 457777777655 3799999998643 33455555543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=3.6 Score=33.86 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~----~ 110 (223)
.-|.||=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ .+. .
T Consensus 13 ~~k~vlVTGas~g-IG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 13 ENKVALVTASTDG-IGLAIARRLAQ--DGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578998888766 46666655443 4679999999998888777778776 7667777777431 122 2
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 89 ~g~iD~lv~~Ag 100 (260)
T 2zat_A 89 HGGVDILVSNAA 100 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 247999998775
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=0.29 Score=42.72 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=58.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfV 117 (223)
.-++||-+|. .|.+..++.+|++. +. +|+.++.++++.+.+++. + ..-+.....+..+.+.++ ..+|+|
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~---Ga~~Vi~~~~~~~~~~~~~~l---a-~~v~~~~~~~~~~~~~~~~~~g~D~v 235 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRAS---GAGPILVSDPNPYRLAFARPY---A-DRLVNPLEEDLLEVVRRVTGSGVEVL 235 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHT---TCCSEEEECSCHHHHGGGTTT---C-SEEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh---H-HhccCcCccCHHHHHHHhcCCCCCEE
Confidence 4578999998 56655666666542 55 899999999998888775 3 111222223434444432 369988
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
| |+.- ....++ .++.+++||.+|.=
T Consensus 236 i-d~~g--~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 236 L-EFSG--NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp E-ECSC--CHHHHHHHHHHEEEEEEEEEC
T ss_pred E-ECCC--CHHHHHHHHHHHhcCCEEEEE
Confidence 6 5542 233454 44566788877753
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.75 Score=39.83 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCCeEEEEccCcchHHHH--HHHHHhcCCCCcEEEEEeCCchH
Q 027409 41 NAKLIVEAWTHGGPITTS--IGLAIAARHTCARHVCIVPDERS 81 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~St--l~la~A~~~~~g~i~TIE~d~e~ 81 (223)
+++.|+=.++..|.+-|+ ..||.+....+-++.-||.|+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 456666666544433344 34444444456689999999874
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
Probab=86.51 E-value=1.1 Score=33.02 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcC-ceEEEEecchHHHhcCC----CCccEEEEeCCCcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVG-WVSEVIVRQAEEVMGEL----KGVDFLVVDCTSKD 125 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G-~~I~li~GdA~evL~~L----~~fDfVFIDa~K~~ 125 (223)
..+|.-+|.|+...+.-+..+++. | +.+.. ..++.+.+..+ ..+|+||+|..-..
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~-g~~~v~~-~~~~~~~~~~~~~~~~~~dlvi~D~~l~~ 79 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDA-GRYRVTR-TVGRAAQIVQRTDGLDAFDILMIDGAALD 79 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHH-CSCEEEE-ECCCHHHHTTCHHHHTTCSEEEEECTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhC-CCeEEEE-eCCHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 468999999999999999999998 8 87443 44555555444 47999999986443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=86.45 E-value=8.2 Score=33.63 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=49.2
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh--cCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV--VGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|.=||+ |+.++++++..+..+.-+.|+-+|+++++++.-..-+.+. +...+++..++ .+. +..-|+|++=+
T Consensus 2 KI~IiGa--G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~-~~a---~~~aD~Vii~a 75 (310)
T 2xxj_A 2 KVGIVGS--GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS-YGD---LEGARAVVLAA 75 (310)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC-GGG---GTTEEEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC-HHH---hCCCCEEEECC
Confidence 5677886 6677887777666554579999999998877533334443 12225666555 333 45799999977
Q ss_pred CCc
Q 027409 122 TSK 124 (223)
Q Consensus 122 ~K~ 124 (223)
...
T Consensus 76 g~~ 78 (310)
T 2xxj_A 76 GVA 78 (310)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.39 E-value=6.7 Score=32.75 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=55.3
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEE---------EecchHHHhcCCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEV---------IVRQAEEVMGELKG 113 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l---------i~GdA~evL~~L~~ 113 (223)
.+|.=||+ |..+++++...+. .+-.|+-++++++..+..+ +. |+.+.- ..-+..+....+..
T Consensus 4 m~i~iiG~--G~~G~~~a~~l~~--~g~~V~~~~r~~~~~~~~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGA--GAMGSRLGIMLHQ--GGNDVTLIDQWPAHIEAIR----KN-GLIADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HH-CEEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECc--CHHHHHHHHHHHh--CCCcEEEEECCHHHHHHHH----hC-CEEEEeCCCeeEecceeecchhhcccCCC
Confidence 47888998 4555666554433 2447999999988766543 33 443211 00022222222347
Q ss_pred ccEEEEeCCCcccHHHHHHhcc-CCCceEEEE
Q 027409 114 VDFLVVDCTSKDFARVLRFARF-SNKGAVLAF 144 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~~~~-l~~GgvIV~ 144 (223)
.|+||+=....+..+.++.+.+ ++++.+||.
T Consensus 75 ~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 75 VDLIIALTKAQQLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence 9999997765556667766654 477877665
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.36 E-value=2 Score=35.09 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcC--------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGE-------- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~-------- 110 (223)
.-|.+|=.|.+.| .+.+++...+ ..+.+|+.++++++..+...+.++.. +-.+.++.+|..+ .+.+
T Consensus 8 ~~k~vlITGas~g-iG~~~a~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 8 ENKVGIVTGSGGG-IGQAYAEALA--REGAAVVVADINAEAAEAVAKQIVAD-GGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHH--HCCCEEEEEcCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999998877 3566555444 34679999999999999888888887 7668888888643 2222
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
++++|.++.-|.-
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2479999988753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.29 E-value=2.9 Score=34.06 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=56.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcC--CCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGE--LKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~--L~~fDf 116 (223)
..++|+=+|+ |..+. .+|......+- ++-+|.|++..+.++ . | ++++.||+. +.|.+ +...|.
T Consensus 8 ~~~~viI~G~--G~~G~--~la~~L~~~g~-v~vid~~~~~~~~~~-----~-~--~~~i~gd~~~~~~l~~a~i~~ad~ 74 (234)
T 2aef_A 8 KSRHVVICGW--SESTL--ECLRELRGSEV-FVLAEDENVRKKVLR-----S-G--ANFVHGDPTRVSDLEKANVRGARA 74 (234)
T ss_dssp --CEEEEESC--CHHHH--HHHHHSTTSEE-EEEESCGGGHHHHHH-----T-T--CEEEESCTTCHHHHHHTTCTTCSE
T ss_pred CCCEEEEECC--ChHHH--HHHHHHHhCCe-EEEEECCHHHHHHHh-----c-C--CeEEEcCCCCHHHHHhcCcchhcE
Confidence 3468998987 55344 45555544444 888999998766554 3 4 478899996 56653 568999
Q ss_pred EEEeCCCcccHHHH-HHhccCCCceEEEE
Q 027409 117 LVVDCTSKDFARVL-RFARFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f-~~~~~l~~GgvIV~ 144 (223)
|++=......-... ..++.+.+..-||+
T Consensus 75 vi~~~~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 75 VIVDLESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EEEcCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 99866543222222 34455566645554
|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} | Back alignment and structure |
|---|
Probab=86.22 E-value=1.5 Score=32.07 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=46.5
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
-+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERG-GYRPI-TAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIK 70 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHc-CceEE-EeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 37889999999999999999998 98844 456666666544 36999999986543 244555553
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.20 E-value=4.7 Score=33.47 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC------------chHHHHHHHHHHhhcCceEEEEecchHH--
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD------------ERSRLAYVKAMYDVVGWVSEVIVRQAEE-- 106 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d------------~e~~~~Ar~~~~~a~G~~I~li~GdA~e-- 106 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+.++++ .+..+.+...++.. |..+.++..|..+
T Consensus 9 ~gk~vlVTGas~g-IG~~ia~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 9 QDKVVLVTGGARG-QGRSHAVKLAE--EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-GRKAYTAEVDVRDRA 84 (287)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-TSCEEEEECCTTCHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH--CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-CCceEEEEccCCCHH
Confidence 4588999999877 45666655543 47799999987 67777777778777 7668888887542
Q ss_pred H----hcC----CCCccEEEEeCC
Q 027409 107 V----MGE----LKGVDFLVVDCT 122 (223)
Q Consensus 107 v----L~~----L~~fDfVFIDa~ 122 (223)
. +.+ ++++|.++.-|.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 222 247999998775
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.15 E-value=5.2 Score=33.50 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hhc--------C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMG--------E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~--------~ 110 (223)
.-|.||=.|.+.| .+..++.. ....+.+|+.+.++++..+...+.++.. |..+.++.+|..+ .+. .
T Consensus 43 ~~k~vlITGasgg-IG~~la~~--L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 43 ENKVALVTGAGRG-IGREIAKM--LAKSVSHVICISRTQKSCDSVVDEIKSF-GYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp SSCEEEEESTTSH-HHHHHHHH--HTTTSSEEEEEESSHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHH--HHHcCCEEEEEcCCHHHHHHHHHHHHhc-CCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 3478999998866 45655544 4445778988999988888777778776 6667888887532 121 2
Q ss_pred CCCccEEEEeCCC
Q 027409 111 LKGVDFLVVDCTS 123 (223)
Q Consensus 111 L~~fDfVFIDa~K 123 (223)
++++|.|+.-|.-
T Consensus 119 ~~~id~li~~Ag~ 131 (285)
T 2c07_A 119 HKNVDILVNNAGI 131 (285)
T ss_dssp CSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2478999987753
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.90 E-value=3.9 Score=34.58 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------HhcC----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE---- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~---- 110 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+-++++++..+...+.+... |-.+.++.+|..+ .+.+
T Consensus 27 ~~k~~lVTGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 27 PSPVALITGAGSG-IGRATALALAA--DGVTVGALGRTRTEVEEVADEIVGA-GGQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp CCCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4588999998877 45666655443 4789999999999988888888877 7667888887642 1222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 103 ~g~iD~lVnnAg 114 (283)
T 3v8b_A 103 FGHLDIVVANAG 114 (283)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEEEECCC
Confidence 247999998775
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=85.90 E-value=4.1 Score=33.68 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=25.2
Q ss_pred cCCCeEEEEccCcchHHHHH--HHHHhcCCCCcEEEEEeCCchH
Q 027409 40 WNAKLIVEAWTHGGPITTSI--GLAIAARHTCARHVCIVPDERS 81 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl--~la~A~~~~~g~i~TIE~d~e~ 81 (223)
.+++.|.=.++-.|.+-||+ .||.+.. .+-++.-||.|+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 34555555565555443444 4554445 56789999999875
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.89 E-value=2.5 Score=36.13 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH----------HHhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE----------EVMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~----------evL~~ 110 (223)
+=|.+|=-|.+.| ++.+++.+.+. .|++|+-.+++++..+.+.+.+.+. |.++..+..|.. ++..+
T Consensus 8 ~gKvalVTGas~G-IG~aia~~la~--~Ga~Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 8 TGKTALVTGSARG-LGFAYAEGLAA--AGARVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 3467777788877 35666665553 4789999999999999999999988 877777777742 23334
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 84 ~G~iDiLVNNAG 95 (255)
T 4g81_D 84 GIHVDILINNAG 95 (255)
T ss_dssp TCCCCEEEECCC
T ss_pred CCCCcEEEECCC
Confidence 467999987664
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=85.84 E-value=3.2 Score=34.90 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG---- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~---- 109 (223)
.+-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++..|..+ .+.
T Consensus 26 l~~k~~lVTGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 26 LDKQVAIVTGASRG-IGRAIALELAR--RGAMVIGTATTEAGAEGIGAAFKQA-GLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp TTTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 45688998898877 45666655543 4779999999999999888889888 7777777777532 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 102 ~~g~iD~lvnnAg 114 (270)
T 3ftp_A 102 EFGALNVLVNNAG 114 (270)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 2247999998775
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=85.81 E-value=1.6 Score=31.98 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=47.1
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..+|+||+|..-.. -.++++.++
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr 71 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGA-GYEVR-RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVR 71 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC-CCEEE-EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 57999999999999999999998 99854 456777766655 47999999986432 344555553
|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.80 E-value=1.8 Score=31.65 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=47.4
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccC
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFS 136 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l 136 (223)
.+|.-+|.|+...+.-+..++.. |+.|. ...++.+.+..+ ..+|+||+|..-. .-.++++.++..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDE-PYDIF-HVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTS-SSEEE-EESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhc-CceEE-EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999888 88754 556776666655 3799999998643 234555555433
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=85.75 E-value=4.3 Score=33.91 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=57.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---eEEEEecchHH------HhcC-
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---VSEVIVRQAEE------VMGE- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---~I~li~GdA~e------vL~~- 110 (223)
.-|.+|=.|.+.| ++++++...+. .+.+|+-++++++..+.+.+.+++. |- .+.++.+|..+ .+.+
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 10 QDRTYLVTGGGSG-IGKGVAAGLVA--AGASVMIVGRNPDKLAGAVQELEAL-GANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTT-CCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999998877 46666655543 4779999999999999988888887 65 48888888642 1222
Q ss_pred ---CCCccEEEEeCCC
Q 027409 111 ---LKGVDFLVVDCTS 123 (223)
Q Consensus 111 ---L~~fDfVFIDa~K 123 (223)
+++.|.++.-|.-
T Consensus 86 ~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 2478999987763
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.53 E-value=2.1 Score=37.46 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=57.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--C-Cc
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--K-GV 114 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~-~f 114 (223)
..-++||=+|.+ |.+..++.+|++. .+.+|+.++.++++.+.|++ . |.. ++.... ..+.+.++ + .+
T Consensus 185 ~~g~~VlV~GaG-~vG~~avqlak~~--~Ga~Vi~~~~~~~~~~~~~~----l-Ga~~vi~~~~~-~~~~v~~~~~g~g~ 255 (359)
T 1h2b_A 185 YPGAYVAIVGVG-GLGHIAVQLLKVM--TPATVIALDVKEEKLKLAER----L-GADHVVDARRD-PVKQVMELTRGRGV 255 (359)
T ss_dssp CTTCEEEEECCS-HHHHHHHHHHHHH--CCCEEEEEESSHHHHHHHHH----T-TCSEEEETTSC-HHHHHHHHTTTCCE
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----h-CCCEEEeccch-HHHHHHHHhCCCCC
Confidence 345789999984 7655666776543 15689999999998887764 4 654 332222 22334333 2 69
Q ss_pred cEEEEeCCCcccHHHHHHhccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKDFARVLRFARFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~DN 146 (223)
|+|| |+.-......++....+ +||.++.=.
T Consensus 256 Dvvi-d~~G~~~~~~~~~~~~~-~~G~~v~~g 285 (359)
T 1h2b_A 256 NVAM-DFVGSQATVDYTPYLLG-RMGRLIIVG 285 (359)
T ss_dssp EEEE-ESSCCHHHHHHGGGGEE-EEEEEEECC
T ss_pred cEEE-ECCCCchHHHHHHHhhc-CCCEEEEEe
Confidence 9886 66432211155543223 788877643
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.51 E-value=8 Score=33.89 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=50.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh--cCceEEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV--VGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
+..+|.=||+ |+.++++++..+..+--..|+-+|+++++++.-..-+.+. +...+++..++ .+. +..-|+|+
T Consensus 4 ~~~KI~IiGa--G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~-~~a---~~~aDvVi 77 (318)
T 1ez4_A 4 NHQKVVLVGD--GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSD---CKDADLVV 77 (318)
T ss_dssp TBCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGG---GTTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECC-HHH---hCCCCEEE
Confidence 3468999997 6667777776655433458999999998877534444443 13226666544 232 45789999
Q ss_pred EeCCCcc
Q 027409 119 VDCTSKD 125 (223)
Q Consensus 119 IDa~K~~ 125 (223)
+=+...+
T Consensus 78 i~ag~~~ 84 (318)
T 1ez4_A 78 ITAGAPQ 84 (318)
T ss_dssp ECCCC--
T ss_pred ECCCCCC
Confidence 9886443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.49 E-value=7.6 Score=33.74 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=46.1
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh--cCceEEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV--VGWVSEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a--~G~~I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|.=||+ |..+++++...+.......|+-+|+++++.+.....+.+. +....++...| .+. +...|+||+=+
T Consensus 2 kI~VIGa--G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~---~~~aDvViiav 75 (319)
T 1a5z_A 2 KIGIVGL--GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YAD---LKGSDVVIVAA 75 (319)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGG---GTTCSEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHH---hCCCCEEEEcc
Confidence 5777887 5566777665544322348999999998877655544432 01113444445 233 35799999977
Q ss_pred CCcc
Q 027409 122 TSKD 125 (223)
Q Consensus 122 ~K~~ 125 (223)
...+
T Consensus 76 ~~~~ 79 (319)
T 1a5z_A 76 GVPQ 79 (319)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5433
|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=85.45 E-value=6.1 Score=27.58 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=48.9
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhccCCCceEEEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+|.-+|.++...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++.+.++..++-.+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQE-GYTVS-VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHC-CCeEE-EecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 37888999999999999999988 98754 445665655443 36999999986433 2344554543333344443
|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=3 Score=29.02 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=48.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhccCCCceEEEE
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~l~~GgvIV~ 144 (223)
+|.-+|.++...+.-+..++.. |+.+. ...++.+.+..+ ..+|+||+|..-.. -.++++.++..++--+|+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKE-GYEVV-TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhc-CcEEE-EecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 6788999999888889999998 98854 456666666554 37999999986433 2344554432233334443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.42 E-value=5.2 Score=33.42 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=54.5
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
++|.=||+ |..+++++...+......+|+.+|++++..+.++ +. |.... ...|..+.+.. ..|+||+=.-
T Consensus 2 ~~I~iIG~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~-g~~~~-~~~~~~~~~~~--~aDvVilavp 71 (281)
T 2g5c_A 2 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DL-GIIDE-GTTSIAKVEDF--SPDFVMLSSP 71 (281)
T ss_dssp CEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HT-TSCSE-EESCGGGGGGT--CCSEEEECSC
T ss_pred cEEEEEec--CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HC-CCccc-ccCCHHHHhcC--CCCEEEEcCC
Confidence 46788886 4556666555443221237999999998776554 45 65311 12343343331 6899998775
Q ss_pred CcccHHHHHHhc-cCCCceEEE
Q 027409 123 SKDFARVLRFAR-FSNKGAVLA 143 (223)
Q Consensus 123 K~~Y~~~f~~~~-~l~~GgvIV 143 (223)
.....+.++.+. .+++|.+|+
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~ 93 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVT 93 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEE
Confidence 555566666554 357777554
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} | Back alignment and structure |
|---|
Probab=85.24 E-value=3.7 Score=30.26 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=43.7
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEEEeCCCcc--cHHHHHHhcc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTSKD--FARVLRFARF 135 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K~~--Y~~~f~~~~~ 135 (223)
.-+|.-+|.|+...+.-+..++ . |+.+. ...++.+.+..+ .+||+||+|..-.. -.++++.++.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~-~~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-F-DFEVT-TCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-T-TSEEE-EESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-c-CceEE-EeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3589999999998888888885 4 77644 445665555544 46999999986433 3455555543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=6.5 Score=32.33 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~ 110 (223)
.-|+||=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ .+ ..
T Consensus 8 ~~k~vlVTGas~g-iG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 8 EGCTALVTGGSRG-IGYGIVEELAS--LGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578998998766 46666555443 4679999999999888777778776 7667888887532 11 22
Q ss_pred C-CCccEEEEeCC
Q 027409 111 L-KGVDFLVVDCT 122 (223)
Q Consensus 111 L-~~fDfVFIDa~ 122 (223)
+ +++|.++.-|.
T Consensus 84 ~~g~id~lv~~Ag 96 (260)
T 2ae2_A 84 FHGKLNILVNNAG 96 (260)
T ss_dssp TTTCCCEEEECCC
T ss_pred cCCCCCEEEECCC
Confidence 3 47899998775
|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=85.23 E-value=3.1 Score=29.79 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=46.7
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.+++..++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~ 70 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERS-GYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLR 70 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CcEEE-EecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 57889999999999999999998 98854 466777766655 37999999986543 244555554
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=85.20 E-value=1.4 Score=34.32 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=47.8
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~ 134 (223)
.-+|.-+|.|+...+.-+..+++. |+.| ....++.+.+..+ ..+|+|++|..-. +=.++++.++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~ 74 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERR-GYAV-RQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLC 74 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT-TCEE-EEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-CCEE-EEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHH
Confidence 358999999999999999999998 9985 4566776666554 3799999997532 2345555554
|
| >2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.20 E-value=0.33 Score=37.16 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=41.4
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCC
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCT 122 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~ 122 (223)
.-||.-+|-|+...+.-+..+++. |+++.-...++.|.|..+ .+||+|++|-.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~-G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~ 62 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCEL-GHEVAATASRMQEALDIARKGQFDIAIIDVN 62 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHH-CCCCCBCSCCHHHHHHHHHHCCSSEEEECSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhCCCCEEEEecC
Confidence 357999999999999999999999 998433345555555444 47999999986
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.20 E-value=3 Score=34.52 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H----h----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V----M----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v----L----~~ 110 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ . + ..
T Consensus 6 ~~k~vlVTGas~g-IG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 6 NGKVCLVTGAGGN-IGLATALRLAE--EGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999998866 45665555443 4678999999998888877778776 7667788887532 1 1 12
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 82 ~g~id~lv~nAg 93 (262)
T 1zem_A 82 FGKIDFLFNNAG 93 (262)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEEEECCC
Confidence 247899998764
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=6.9 Score=33.13 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cC--c---------e-EEEEec
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VG--W---------V-SEVIVR 102 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G--~---------~-I~li~G 102 (223)
..++|.=||+| ..+++|+...+.. +-.|+-.|++++..+.+++.+++. .| + . ++. ..
T Consensus 3 ~~~kV~VIGaG--~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~ 77 (283)
T 4e12_A 3 GITNVTVLGTG--VLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SD 77 (283)
T ss_dssp SCCEEEEECCS--HHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ES
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eC
Confidence 45789999885 4667776655433 568999999999999888875432 01 0 0 222 23
Q ss_pred chHHHhcCCCCccEEEEeCCCcc---cHHHHHHhc-cCCCceEEEEeCC
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKD---FARVLRFAR-FSNKGAVLAFKNA 147 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~---Y~~~f~~~~-~l~~GgvIV~DNv 147 (223)
|..+.+ ...|+|++=. +++ -..+|+.+. .++++.+| ++|.
T Consensus 78 ~~~~~~---~~aDlVi~av-~~~~~~~~~v~~~l~~~~~~~~il-~s~t 121 (283)
T 4e12_A 78 DLAQAV---KDADLVIEAV-PESLDLKRDIYTKLGELAPAKTIF-ATNS 121 (283)
T ss_dssp CHHHHT---TTCSEEEECC-CSCHHHHHHHHHHHHHHSCTTCEE-EECC
T ss_pred CHHHHh---ccCCEEEEec-cCcHHHHHHHHHHHHhhCCCCcEE-EECC
Confidence 333333 3689988744 553 456666554 45777765 5554
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.17 E-value=5.1 Score=33.25 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=56.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchH------HHhcCCC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAE------EVMGELK 112 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~------evL~~L~ 112 (223)
+-|.+|=.|.+.| ++.+++...+. .+.+|+-++++++..+...+.+... +. .+..+.+|.. +++.+++
T Consensus 9 ~~k~~lVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAG-IGKAIATSLVA--EGANVLINGRREENVNETIKEIRAQ-YPDAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHH-CTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEecCCCCHHHHHHHHHhcC
Confidence 4578998888866 45666555443 4789999999999988888888766 42 2777777753 2344456
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-|.
T Consensus 85 ~id~lv~nAg 94 (267)
T 3t4x_A 85 KVDILINNLG 94 (267)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999998775
|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.4 Score=32.68 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=44.9
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
.-+|.-+|.|+...+.-+..+++. |+.+. ...++.+.+..+ ..||+||+|..-.. -.++++.++
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKA-GHKVL-CVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC---CEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHc-CCeEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 358999999999999999999998 98854 356666666554 47999999986433 345555553
|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A | Back alignment and structure |
|---|
Probab=85.01 E-value=3.2 Score=32.47 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=52.5
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCc--ccHHHHHHhccCCCceEEEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSK--DFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~--~Y~~~f~~~~~l~~GgvIV~ 144 (223)
.+|.-+|.|+...+.-+..++.. |+.+.....++.+.+..+ ..+|+||+|..-. +-.+++..++...+.-+|+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~l 91 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREE-GYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVL 91 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 58999999999999999999998 998554667777766655 3799999998643 33455555543323344443
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.98 E-value=4.2 Score=33.88 Aligned_cols=78 Identities=24% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh-hcCceEEEEecchHH------Hhc----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD-VVGWVSEVIVRQAEE------VMG---- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~-a~G~~I~li~GdA~e------vL~---- 109 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+-++++++..+.+.+.+.+ . |..+.++..|..+ .+.
T Consensus 19 ~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 19 DGKRALITGATKG-IGADIARAFAA--AGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4588999998877 45666555443 478999999999998888888876 5 6668888887642 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 95 ~~g~id~lv~nAg 107 (266)
T 4egf_A 95 AFGGLDVLVNNAG 107 (266)
T ss_dssp HHTSCSEEEEECC
T ss_pred HcCCCCEEEECCC
Confidence 2247999998775
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=84.94 E-value=4.6 Score=35.24 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
.-.+||-+|+ .|.+..++.+|++. +.+|+.++.++++.+.+++ +. |...-+-..+ .+.+.++ +.+|+||
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~---Ga~Vi~~~~~~~~~~~~~~---~l-Ga~~vi~~~~-~~~~~~~~~g~D~vi- 249 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAM---GHHVTVISSSNKKREEALQ---DL-GADDYVIGSD-QAKMSELADSLDYVI- 249 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH---TCEEEEEESSTTHHHHHHT---TS-CCSCEEETTC-HHHHHHSTTTEEEEE-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHH---Hc-CCceeecccc-HHHHHHhcCCCCEEE-
Confidence 4468999996 46655666776653 5799999999988776652 34 6541111223 2333333 4799886
Q ss_pred eCCCc--ccHHHHHHhccCCCceEEEEe
Q 027409 120 DCTSK--DFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 120 Da~K~--~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.-. .... .++.+++||.++.=
T Consensus 250 d~~g~~~~~~~---~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 250 DTVPVHHALEP---YLSLLKLDGKLILM 274 (357)
T ss_dssp ECCCSCCCSHH---HHTTEEEEEEEEEC
T ss_pred ECCCChHHHHH---HHHHhccCCEEEEe
Confidence 65432 2233 34556788888753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=8 Score=33.89 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=53.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFI 119 (223)
.-++||-+|+ .|.+..++.+|.+ .+.+|+.++.++++.+.+++ +. |....+-..+ .+.+.++ +.+|+||
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~---~l-Ga~~v~~~~~-~~~~~~~~~~~D~vi- 256 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKA---FGSKVTVISTSPSKKEEALK---NF-GADSFLVSRD-QEQMQAAAGTLDGII- 256 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHH---TS-CCSEEEETTC-HHHHHHTTTCEEEEE-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH---hc-CCceEEeccC-HHHHHHhhCCCCEEE-
Confidence 3468999996 4654455566654 36799999999988776652 34 6541121222 2334333 4799886
Q ss_pred eCCC-c-ccHHHHHHhccCCCceEEEE
Q 027409 120 DCTS-K-DFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 120 Da~K-~-~Y~~~f~~~~~l~~GgvIV~ 144 (223)
|+.- . .....+ ..+++||.+|.
T Consensus 257 d~~g~~~~~~~~~---~~l~~~G~iv~ 280 (366)
T 1yqd_A 257 DTVSAVHPLLPLF---GLLKSHGKLIL 280 (366)
T ss_dssp ECCSSCCCSHHHH---HHEEEEEEEEE
T ss_pred ECCCcHHHHHHHH---HHHhcCCEEEE
Confidence 5533 2 344444 34466777765
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.57 E-value=2.3 Score=36.44 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=57.2
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHH--H----h----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEE--V----M---- 108 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~e--v----L---- 108 (223)
..-|.||=.|.+.| ++.+++...+. .+.+|+.++++++..+.+.+.++.. |- .+.++.+|..+ . +
T Consensus 39 l~~k~vlVTGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 39 LSARSVLVTGGTKG-IGRGIATVFAR--AGANVAVAARSPRELSSVTAELGEL-GAGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHTTS-SSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhh-CCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 35688999898866 45666555443 4679999999999998888888877 63 38888888643 1 1
Q ss_pred cCCCCccEEEEeCC
Q 027409 109 GELKGVDFLVVDCT 122 (223)
Q Consensus 109 ~~L~~fDfVFIDa~ 122 (223)
.+++++|.++.-|.
T Consensus 115 ~~~g~iD~lvnnAg 128 (293)
T 3rih_A 115 DAFGALDVVCANAG 128 (293)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 22347899998775
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=84.48 E-value=3.8 Score=33.36 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--HhcC--------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VMGE-------- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL~~-------- 110 (223)
.-|.||=.|.+.| .++.++...+. .+.+|+.++++++..+...+.++.. |..++++.+|..+ .+.+
T Consensus 12 ~~k~vlItGasgg-iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 12 DNRVAIVTGGAQN-IGLACVTALAE--AGARVIIADLDEAMATKAVEDLRME-GHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4588999998866 45665554443 4679999999998887777778776 6668888888642 2222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.|+.-|.
T Consensus 88 ~~~id~vi~~Ag 99 (260)
T 3awd_A 88 EGRVDILVACAG 99 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 136899998775
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=84.45 E-value=2.7 Score=35.39 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh----c----
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM----G---- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL----~---- 109 (223)
..-|.+|=.|.+.| ++.+++...+. .+.+|+-++++++..+...+.++.. |..+.++.+|..+ .+ .
T Consensus 24 l~gk~~lVTGas~g-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 24 LGGRTALVTGSSRG-LGRAMAEGLAV--AGARILINGTDPSRVAQTVQEFRNV-GHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35688999998877 45666655543 4679999999999999988888887 7778888887642 12 2
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
+.++.|.++.-|.
T Consensus 100 ~~g~iD~lv~nAg 112 (271)
T 4ibo_A 100 QGIDVDILVNNAG 112 (271)
T ss_dssp HTCCCCEEEECCC
T ss_pred HCCCCCEEEECCC
Confidence 2247999998775
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=84.42 E-value=11 Score=32.40 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=46.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHHhcCCCCccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~evL~~L~~fDfVFI 119 (223)
.+|.=||+ |..+++++...+...-...|+-+|+++++.+.....+.+. .+..+++..+|. +.+ ...|+||+
T Consensus 2 ~kI~VIGa--G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~---~~aDvVii 75 (309)
T 1hyh_A 2 RKIGIIGL--GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AAL---ADADVVIS 75 (309)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG---TTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh---CCCCEEEE
Confidence 36888885 5556776655443211147999999998877665544432 011245545664 433 57999999
Q ss_pred eCCCcc
Q 027409 120 DCTSKD 125 (223)
Q Consensus 120 Da~K~~ 125 (223)
=....+
T Consensus 76 av~~~~ 81 (309)
T 1hyh_A 76 TLGNIK 81 (309)
T ss_dssp CCSCGG
T ss_pred ecCCcc
Confidence 775433
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=8.4 Score=33.76 Aligned_cols=74 Identities=15% Similarity=0.031 Sum_probs=48.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEe-cchHHHhcCCCCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIV-RQAEEVMGELKGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~-GdA~evL~~L~~fDf 116 (223)
...+|.=||+ |+.+++++...+...- ..|+-+|+|+++++.....+++. .+...++.. +|- +. +..-|+
T Consensus 3 ~~~kI~VIGa--G~vG~~ia~~la~~g~-~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~a---l~~aD~ 75 (322)
T 1t2d_A 3 PKAKIVLVGS--GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DD---LAGADV 75 (322)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GG---GTTCSE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH---hCCCCE
Confidence 3458999997 6777888777665432 24999999999887655555542 022234443 453 43 457899
Q ss_pred EEEeC
Q 027409 117 LVVDC 121 (223)
Q Consensus 117 VFIDa 121 (223)
|++=+
T Consensus 76 Vi~a~ 80 (322)
T 1t2d_A 76 VIVTA 80 (322)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99986
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=84.38 E-value=4.4 Score=34.95 Aligned_cols=79 Identities=6% Similarity=-0.037 Sum_probs=57.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchHH------Hhc---
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAEE------VMG--- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~e------vL~--- 109 (223)
.-|.||=.|.+.| ++.+++...+ ..+.+|+.++++++..+.+.+.++.. |. .+.++..|..+ .+.
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~--~~G~~Vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLL--NQGCKVAIADIRQDSIDKALATLEAE-GSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4578999998877 4566555444 34779999999999999999888877 65 38888888532 122
Q ss_pred -CCCCccEEEEeCCC
Q 027409 110 -ELKGVDFLVVDCTS 123 (223)
Q Consensus 110 -~L~~fDfVFIDa~K 123 (223)
..+++|.++.-|.-
T Consensus 83 ~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 83 ARFGPVSILCNNAGV 97 (319)
T ss_dssp HHTCCEEEEEECCCC
T ss_pred HhCCCCCEEEECCCc
Confidence 23478999998863
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=6.1 Score=36.28 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=54.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchH------------HHHHHHHHHhhcCceEEEEecchHH-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERS------------RLAYVKAMYDVVGWVSEVIVRQAEE- 106 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~------------~~~Ar~~~~~a~G~~I~li~GdA~e- 106 (223)
.+.|.+|=.|.+.|+ +.++++|.+....|.+|+.+.++.+. .+..++..++. |..+..+.+|..+
T Consensus 58 ~~gK~aLVTGassGI-G~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGF-GLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK-GLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHH-HHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT-TCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc-CCcEEEEEeeCCCH
Confidence 568999999999885 45533544545557899888886543 34455556666 7777788888642
Q ss_pred ---------HhcCCCCccEEEEeCCC
Q 027409 107 ---------VMGELKGVDFLVVDCTS 123 (223)
Q Consensus 107 ---------vL~~L~~fDfVFIDa~K 123 (223)
+..+++..|+++.-|.-
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~ 161 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAA 161 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 22234579999887653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.18 E-value=0.49 Score=41.64 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~ 110 (223)
.-..||+-=||.| +|+.-|+ ..+-+-+.+|++++..+.|++.++++ +.+.+.+.+||.+++..
T Consensus 252 ~~~~VlDpF~GsG---tt~~aa~---~~gr~~ig~e~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~i~~~ 314 (323)
T 1boo_A 252 PDDLVVDIFGGSN---TTGLVAE---RESRKWISFEMKPEYVAASAFRFLDN-NISEEKITDIYNRILNG 314 (323)
T ss_dssp TTCEEEETTCTTC---HHHHHHH---HTTCEEEEEESCHHHHHHHHGGGSCS-CSCHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCC---HHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHcC
Confidence 4457899888877 4533222 23568999999999999999999999 88778889999998764
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A | Back alignment and structure |
|---|
Probab=84.15 E-value=4.6 Score=28.14 Aligned_cols=62 Identities=21% Similarity=0.121 Sum_probs=44.3
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
+|.-+|.|+...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~-g~~v~-~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~ 67 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDA-GHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR 67 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhhc-CCEEE-EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Confidence 5778899999999999999988 98754 456665655544 36999999986443 234555554
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.14 E-value=4.1 Score=33.99 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------Hh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------VM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL----~~ 110 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ .+ ..
T Consensus 20 ~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 20 KGTTALVTGGSKG-IGYAIVEELAG--LGARVYTCSRNEKELDECLEIWREK-GLNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcch-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4588999998866 45666555443 4679999999999888877778776 7667888887531 11 22
Q ss_pred C-CCccEEEEeCC
Q 027409 111 L-KGVDFLVVDCT 122 (223)
Q Consensus 111 L-~~fDfVFIDa~ 122 (223)
+ +.+|.++.-|.
T Consensus 96 ~~g~id~lv~nAg 108 (273)
T 1ae1_A 96 FDGKLNILVNNAG 108 (273)
T ss_dssp TTSCCCEEEECCC
T ss_pred cCCCCcEEEECCC
Confidence 3 57899988775
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=5.2 Score=32.74 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEecchHH------Hhc----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMG---- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~---- 109 (223)
.-|++|=.|.+.| ++.+++...+. .+.+|+.++. +++..+...+.++.. |..+.++.+|..+ .+.
T Consensus 3 ~~k~~lVTGas~g-IG~~ia~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 3 MTKSALVTGASRG-IGRSIALQLAE--EGYNVAVNYAGSKEKAEAVVEEIKAK-GVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CSCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHT-TSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHH--CCCEEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578888888866 45666555443 4678877776 567777777788887 7777888887532 122
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 79 ~~g~id~lv~nAg 91 (246)
T 3osu_A 79 QFGSLDVLVNNAG 91 (246)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 2247999988775
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=3.5 Score=33.86 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh----c----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM----G----E 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL----~----~ 110 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+.++++++..+...+.++.. |..+.++.+|..+ .+ . .
T Consensus 6 ~~k~~lVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 6 QGKVALITGASSG-IGEATARALAA--EGAAVAIAARRVEKLRALGDELTAA-GAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999998866 45666555443 4678999999999888888888776 7667788887532 12 2 1
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 82 ~g~id~lv~nAg 93 (247)
T 2jah_A 82 LGGLDILVNNAG 93 (247)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 247999988764
|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A | Back alignment and structure |
|---|
Probab=84.05 E-value=1.5 Score=30.90 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=45.4
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
+|.-+|.++...+.-+..++.. |+.+. ...++.+.+..+ ..+|+|++|..-.. -.++++.++
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 68 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQ-GYETL-QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLK 68 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHc-CcEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 6888999999999999999998 98844 456776766554 37999999986433 234555543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.95 E-value=6.1 Score=33.24 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC-CchHHHHHHHHHHhhcCceEEEEecchHH------HhcC---
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP-DERSRLAYVKAMYDVVGWVSEVIVRQAEE------VMGE--- 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~-d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------vL~~--- 110 (223)
.-|.+|=.|.+.| ++.+++...+. .+.+|+.+++ +++..+...+.+... |..+.++.+|..+ .+.+
T Consensus 28 ~~k~~lVTGas~G-IG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 28 ARPVAIVTGGRRG-IGLGIARALAA--SGFDIAITGIGDAEGVAPVIAELSGL-GARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp CCCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCCHHHHHHHHHHHHHT-TCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHH--CCCeEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4578999998877 45666655543 4678988885 778777777788877 7668888888643 1222
Q ss_pred -CCCccEEEEeCCC
Q 027409 111 -LKGVDFLVVDCTS 123 (223)
Q Consensus 111 -L~~fDfVFIDa~K 123 (223)
+++.|.++.-|.-
T Consensus 104 ~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 104 EFGRIDCLVNNAGI 117 (280)
T ss_dssp HHSCCCEEEEECC-
T ss_pred HcCCCCEEEECCCc
Confidence 2479999988754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.95 E-value=4.9 Score=33.32 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=57.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHH--Hh----c---
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEE--VM----G--- 109 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~e--vL----~--- 109 (223)
..-|++|=.|.+.| ++.+++...+. .+.+|+-++++++..+.+.+.+++. |- .+.++..|..+ .+ .
T Consensus 8 l~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 8 LQGRSVVVTGGTKG-IGRGIATVFAR--AGANVAVAGRSTADIDACVADLDQL-GSGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTT-SSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhh-CCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34588998888866 45666555443 4679999999999999888888887 63 38888888642 12 2
Q ss_pred -CCCCccEEEEeCC
Q 027409 110 -ELKGVDFLVVDCT 122 (223)
Q Consensus 110 -~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 84 ~~~g~id~lvnnAg 97 (262)
T 3pk0_A 84 EEFGGIDVVCANAG 97 (262)
T ss_dssp HHHSCCSEEEECCC
T ss_pred HHhCCCCEEEECCC
Confidence 2247999998775
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=83.90 E-value=6.5 Score=33.33 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=55.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC------------chHHHHHHHHHHhhcCceEEEEecchHH-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD------------ERSRLAYVKAMYDVVGWVSEVIVRQAEE- 106 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d------------~e~~~~Ar~~~~~a~G~~I~li~GdA~e- 106 (223)
..-|.+|=.|.+.|. +.+++...+. .+.+|+.++++ ++..+.+.+.++.. |..+.++..|..+
T Consensus 26 l~gk~~lVTGas~GI-G~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 26 VEGKVAFITGAARGQ-GRSHAITLAR--EGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-GRRIIASQVDVRDF 101 (299)
T ss_dssp TTTCEEEEESTTSHH-HHHHHHHHHH--TTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCH
T ss_pred cCCCEEEEECCCCHH-HHHHHHHHHH--CCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-CCceEEEECCCCCH
Confidence 456889999998774 5666555543 47899999987 67777777777777 7668888887642
Q ss_pred -----Hhc----CCCCccEEEEeCC
Q 027409 107 -----VMG----ELKGVDFLVVDCT 122 (223)
Q Consensus 107 -----vL~----~L~~fDfVFIDa~ 122 (223)
.+. ++++.|.++.-|.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 122 2247999887764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.90 E-value=2.7 Score=34.13 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=56.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecch--------HHHhcC
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQA--------EEVMGE 110 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA--------~evL~~ 110 (223)
.+-|.+|=.|.+.| .+.+++...+ ..+.+|+.++++++..+...+.++.. +.. +.++..|. .+.+..
T Consensus 12 l~~k~vlITGas~g-IG~~ia~~l~--~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 12 LKGRVILVTGAARG-IGAAAARAYA--AHGASVVLLGRTEASLAEVSDQIKSA-GQPQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTTCEEEESSTTSH-HHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCh-HHHHHHHHHH--HCCCEEEEEecCHHHHHHHHHHHHhc-CCCCceEEEeccccCCHHHHHHHHHH
Confidence 34578999998877 4566555544 34679999999999999999989887 644 66666654 112222
Q ss_pred ----CCCccEEEEeCCC
Q 027409 111 ----LKGVDFLVVDCTS 123 (223)
Q Consensus 111 ----L~~fDfVFIDa~K 123 (223)
++++|.++.-|.-
T Consensus 88 ~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHhCCCCCEEEECCcc
Confidence 2479999988763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 100.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 100.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 100.0 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.6 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.58 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.56 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.51 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.51 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.51 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.44 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.43 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.42 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.39 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.38 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.37 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.33 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.33 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.32 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.28 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.26 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.25 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.23 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.22 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.21 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.19 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.18 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.17 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.17 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.15 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.14 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.12 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.11 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.11 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.08 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.07 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.05 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.04 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.03 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.01 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.0 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.99 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.98 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.97 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.95 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.95 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.93 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.92 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.91 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.9 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.9 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.88 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.87 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.87 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.86 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.84 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.83 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.82 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.79 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.77 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.75 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.75 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.74 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.61 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.61 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.49 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.48 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.46 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.43 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.43 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.33 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.29 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.26 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.18 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.02 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.97 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.97 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.96 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.95 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.92 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.89 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.86 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.79 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.69 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.47 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.22 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.21 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.15 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.9 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.76 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.68 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.59 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.28 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.14 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.12 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.11 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.04 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.67 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.54 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.49 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.34 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.32 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.11 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.11 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.07 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.02 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.86 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.7 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.67 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 94.22 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.85 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 93.42 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.27 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.22 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.2 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.1 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 92.85 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 92.73 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.68 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.63 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.31 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.05 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 92.04 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.79 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 91.65 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 91.23 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.1 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 90.98 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.98 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 90.88 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.81 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.74 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 90.67 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.59 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 90.58 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 90.58 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.56 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.51 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.48 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 90.46 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 90.28 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 90.27 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.26 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.06 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 89.88 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.53 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 89.4 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.38 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 89.27 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 89.1 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.02 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.01 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.97 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.87 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.81 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 88.77 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 88.72 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 88.59 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.48 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 88.16 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.64 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 87.52 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.44 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 87.25 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 87.03 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 86.66 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.47 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.29 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 86.16 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 86.09 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 85.85 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.5 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 84.99 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 84.96 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.57 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.53 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 84.45 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.43 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 84.41 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 84.16 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 84.04 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 83.66 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.61 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.55 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.48 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 83.4 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.21 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 83.05 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 83.05 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 82.76 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 82.6 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.54 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.5 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 81.81 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 81.73 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 81.49 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 81.49 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 81.43 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.35 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 81.04 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.82 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 80.6 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.52 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.45 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 80.43 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 80.08 |
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.9e-43 Score=304.14 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=138.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
.++|++|+||++|+++.+||+||||||++|| ||+|||.|. +++|+|+|||.|+++++.|+++|+++ |+. |+++.
T Consensus 42 ~~~~~~g~~L~~L~~~~~~k~iLEiGT~~Gy--Stl~la~al-~~~g~v~tie~~~~~~~~A~~~~~~~-g~~~~i~~~~ 117 (227)
T d1susa1 42 TTSADEGQFLSMLLKLINAKNTMEIGVYTGY--SLLATALAI-PEDGKILAMDINKENYELGLPVIKKA-GVDHKIDFRE 117 (227)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCGGGH--HHHHHHHHS-CTTCEEEEEESCCHHHHHHHHHHHHT-TCGGGEEEEE
T ss_pred ccCHHHHHHHHHHHHhcCCCcEEEecchhhh--hHHHHHhhC-CCCcEEEEEeccchhHHHHHHHHHHh-ccccceeeee
Confidence 6899999999999999999999999999999 999999886 55899999999999999999999999 998 99999
Q ss_pred cchHHHhcCC-------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--cc--ccccc-----c----
Q 027409 102 RQAEEVMGEL-------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SG--LRWQG-----Q---- 160 (223)
Q Consensus 102 GdA~evL~~L-------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~--~~~~~-----r---- 160 (223)
|||.++|+++ ++||||||||+|++|++||+.+ ++++|||+||+||++|+|. +. ...+. +
T Consensus 118 g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~ 197 (227)
T d1susa1 118 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVL 197 (227)
T ss_dssp SCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHH
Confidence 9999999876 2699999999999999999977 4569999999999999874 11 00000 0
Q ss_pred ---cccccCCCceEEEEeecCCceEEEEEc
Q 027409 161 ---GVLDRGTRVVRSVFLPVGQGLDIVHVG 187 (223)
Q Consensus 161 ---~~v~~~~~~~~t~lLPiGDGl~vs~k~ 187 (223)
..++ .+|++++++||+|||++|++|.
T Consensus 198 ~~n~~i~-~d~r~~~~llPigDGl~i~~K~ 226 (227)
T d1susa1 198 ELNKALA-VDPRIEICMLPVGDGITICRRI 226 (227)
T ss_dssp HHHHHHH-HCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHh-cCCCEEEEEeecCCeeEEEEEC
Confidence 0233 3477999999999999999885
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-42 Score=292.30 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=137.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+.|+|++|+||++|+++.+||+||||||++|| ||+|||.|. +.+|+|+|||.|++.++.|+++|+++ |++ |+++
T Consensus 41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~Gy--Stl~~a~al-~~~g~i~tie~~~~~~~~A~~~~~~a-g~~~~i~~~ 116 (219)
T d2avda1 41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGY--SALALALAL-PADGRVVTCEVDAQPPELGRPLWRQA-EAEHKIDLR 116 (219)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSH--HHHHHHTTS-CTTCEEEEEESCSHHHHHHHHHHHHT-TCTTTEEEE
T ss_pred cccCHHHHHHHHHHHHccCCCeEEEEechhhH--HHHHHHHhC-CCCceEEEEeechhHHHHHHHHHHhc-CccceEEEE
Confidence 47999999999999999999999999999999 899999875 55899999999999999999999999 998 9999
Q ss_pred ecchHHHhcCC------CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCCCCc--ccc----------cccccc
Q 027409 101 VRQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQRST--SGL----------RWQGQG 161 (223)
Q Consensus 101 ~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g~--~~~----------~~~~r~ 161 (223)
.|||.+.|+++ .+|||||+|++|++|..||+.+ ++++|||+||+||++|+|. +.. .++.
T Consensus 117 ~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~-- 194 (219)
T d2avda1 117 LKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNE-- 194 (219)
T ss_dssp ESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHH--
T ss_pred EeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHH--
Confidence 99999998764 3799999999999999999976 5669999999999999774 110 1222
Q ss_pred ccccCCCceEEEEeecCCceEEEEE
Q 027409 162 VLDRGTRVVRSVFLPVGQGLDIVHV 186 (223)
Q Consensus 162 ~v~~~~~~~~t~lLPiGDGl~vs~k 186 (223)
.+++ ++++++++||+|||++|++|
T Consensus 195 ~i~~-d~r~~~~llPigdGl~ia~K 218 (219)
T d2avda1 195 RIRR-DVRVYISLLPLGDGLTLAFK 218 (219)
T ss_dssp HHHH-CTTEEEEEECSTTCEEEEEE
T ss_pred HHHh-CCCEEEEEeecCCeeEEEEe
Confidence 3443 46799999999999999997
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.5e-35 Score=248.60 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=132.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+.|.|++|+||+.|++..+|++||||||++|| ||+|||.|. +++|+|+|||.++++++.|+++++++ |++ |+++
T Consensus 38 m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~--Sti~la~al-~~~g~v~sid~~~~~~~~a~~~~~~~-gl~~~i~l~ 113 (214)
T d2cl5a1 38 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGY--SAVRMARLL-QPGARLLTMEMNPDYAAITQQMLNFA-GLQDKVTIL 113 (214)
T ss_dssp CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHTTC-CTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEE
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEEccCchh--HHHHHHHhC-CCccEEEEEeccHHHHHHHHHHHHHc-CCCccceee
Confidence 36999999999999999999999999999999 899999764 56899999999999999999999999 998 9999
Q ss_pred ecchHHHhcCC------CCccEEEEeCCCcccHHHHHHh---ccCCCceEEEEeCCCCCCccccccccccccccCCCceE
Q 027409 101 VRQAEEVMGEL------KGVDFLVVDCTSKDFARVLRFA---RFSNKGAVLAFKNAFQRSTSGLRWQGQGVLDRGTRVVR 171 (223)
Q Consensus 101 ~GdA~evL~~L------~~fDfVFIDa~K~~Y~~~f~~~---~~l~~GgvIV~DNvl~~g~~~~~~~~r~~v~~~~~~~~ 171 (223)
.||+.++|++| ..|||||||++|+.|..++.+. ++++|||+||+||++++|.+++ .. .+|+. +.+.
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~--~~--~vr~~-~~~~ 188 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF--LA--YVRGS-SSFE 188 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHH--HH--HHHHC-TTEE
T ss_pred eccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHH--HH--HHhcc-Ccee
Confidence 99999999876 2699999999999999876643 5669999999999999886332 11 22322 3344
Q ss_pred EE-------EeecCCceEEEEEc
Q 027409 172 SV-------FLPVGQGLDIVHVG 187 (223)
Q Consensus 172 t~-------lLPiGDGl~vs~k~ 187 (223)
+. ++|++|||++++..
T Consensus 189 ~~~~~~~~~~~~~~dgl~~s~~~ 211 (214)
T d2cl5a1 189 CTHYSSYLEYMKVVDGLEKAIYQ 211 (214)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEC
T ss_pred ehhhhhcceecccCCceEEEEec
Confidence 33 38999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=7.4e-17 Score=131.20 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
....++..+|-.++....-.+|||||||+|+ .++++|. ..++|+++|+++++++.|++|+++. |+. |+++.
T Consensus 16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~--~s~~lA~----~~~~V~avD~~~~~l~~a~~n~~~~-gl~~~v~~~~ 88 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGG--VTLELAG----RVRRVYAIDRNPEAISTTEMNLQRH-GLGDNVTLME 88 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSH--HHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHT-TCCTTEEEEE
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEECCeEc--ccccccc----cceEEEEecCCHHHHHHHHHHHHHc-CCCcceEEEE
Confidence 4677888888888899999999999999998 7888763 2579999999999999999999999 996 99999
Q ss_pred cchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 102 RQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
|||.+.+.....||.||++....+..++++.+ +.|+|||.+|+....
T Consensus 89 gda~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 89 GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp SCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CchhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence 99999998888999999999999999999866 567999998887553
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=4.2e-16 Score=130.26 Aligned_cols=115 Identities=8% Similarity=0.003 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
+..|..-..+-.++.+..-.+|||||||+|| +|.+||... .++|+|+++|+++++++.|++++++. ++. +.++.|
T Consensus 58 i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~--~s~~la~~~-~~~g~V~~id~~~~~~~~a~~~~~~~-~~~n~~~~~~ 133 (213)
T d1dl5a1 58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVERL-GIENVIFVCG 133 (213)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEES
T ss_pred eccchhhHHHHHhhhccccceEEEecCccch--hHHHHHHHh-CCCCcEEEeecchhhHHHhhhhHhhh-cccccccccC
Confidence 4567765555566677788899999999999 777887654 34789999999999999999999999 998 999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
|+.+.++.-++||.||+++..+++++- +++.|+|||.+|+
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~p~~--l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 134 DGYYGVPEFSPYDVIFVTVGVDEVPET--WFTQLKEGGRVIV 173 (213)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSCCCHH--HHHHEEEEEEEEE
T ss_pred chHHccccccchhhhhhhccHHHhHHH--HHHhcCCCcEEEE
Confidence 999877765689999999998888653 3455799999887
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.5e-15 Score=128.21 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=92.2
Q ss_pred CCcHHH-HHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-----
Q 027409 24 IKESGV-AELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV----- 96 (223)
Q Consensus 24 ii~p~~-g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~----- 96 (223)
+..|.. +.+|..|. .+..-.+|||||||+|| +|..||... .+.|+|++||++++.++.|++++++. ++.
T Consensus 57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy--~ta~la~l~-~~~g~V~~ie~~~~l~~~a~~~l~~~-~~~~~~~~ 132 (224)
T d1i1na_ 57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGI--LTACFARMV-GCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSG 132 (224)
T ss_dssp ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSH--HHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTS
T ss_pred hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCH--HHHHHHHHh-CCCceEEEEcCCHHHHHHHHHhcccc-Cccccccc
Confidence 556664 55555554 34455799999999999 776777644 45799999999999999999999987 653
Q ss_pred -EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEE
Q 027409 97 -SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAF 144 (223)
Q Consensus 97 -I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~ 144 (223)
++++.||+.+..+...+||.|++++...+.++- +++.|+|||.+|+
T Consensus 133 ~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~~--l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 133 RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA--LIDQLKPGGRLIL 179 (224)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHH--HHHTEEEEEEEEE
T ss_pred ceEEEEeecccccchhhhhhhhhhhcchhhcCHH--HHhhcCCCcEEEE
Confidence 899999999877766689999999998887653 3566799999998
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.59 E-value=9.3e-16 Score=130.92 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhc--CCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAA--RHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~--~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
+..|....++..|+.-.+|++||||||+.|+ |++|+|... ...+|+|++||+++.....+.. -.. |+++
T Consensus 63 ~k~p~d~~~~~eli~~~KPk~ILEIGv~~Gg--S~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i 134 (232)
T d2bm8a1 63 LKDPDTQAVYHDMLWELRPRTIVELGVYNGG--SLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLH 134 (232)
T ss_dssp CSCHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEE
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEECCCCch--HHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeee
Confidence 5679999999999999999999999999998 788887543 4567999999999875433221 122 9999
Q ss_pred ecchH--HHhcCCC--CccEEEEeCCCcccHHHHHH-h-ccCCCceEEEEeCCC
Q 027409 101 VRQAE--EVMGELK--GVDFLVVDCTSKDFARVLRF-A-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ~GdA~--evL~~L~--~fDfVFIDa~K~~Y~~~f~~-~-~~l~~GgvIV~DNvl 148 (223)
.||+. +.+..+. .+||||||++......+.+. + .++++||++|+|+..
T Consensus 135 ~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 135 QGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred ecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence 99974 4555553 69999999996665544443 2 567999999887764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=4.6e-15 Score=128.78 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=103.3
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
..|...+.-.-.||-|.-..++-.++.+..-.+|||+|||.|+ .|++||.+.. ++|+|+|+|+++++++.|++|+++
T Consensus 67 ~~~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~--lt~~La~~vg-p~G~V~~~d~~~~~~~~Ar~n~~~ 143 (264)
T d1i9ga_ 67 VDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGA--LTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSG 143 (264)
T ss_dssp HHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcH--HHHHHHHhhC-CCcEEEEecCCHHHHHHHHHhhhh
Confidence 3466665555569999999999999999999999999999998 8889998764 479999999999999999999998
Q ss_pred h-cCc-e-EEEEecchHHH-hcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 92 V-VGW-V-SEVIVRQAEEV-MGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 92 a-~G~-~-I~li~GdA~ev-L~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+ .+. . ++++.||+.+. +++ ..||.||+|.-.. .++++.+ +.|+|||.+++-
T Consensus 144 ~~~~~~~nv~~~~~d~~~~~~~~-~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 144 CYGQPPDNWRLVVSDLADSELPD-GSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp HHTSCCTTEEEECSCGGGCCCCT-TCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEE
T ss_pred hccCCCceEEEEecccccccccC-CCcceEEEecCCH--HHHHHHHHhccCCCCEEEEE
Confidence 6 122 2 99999999873 221 4799999997422 3566644 677999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=8e-15 Score=126.93 Aligned_cols=128 Identities=18% Similarity=0.108 Sum_probs=105.7
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
..|+..+.-...||-|--..++-.++.+..-.+|||+|||+|+ .|++||.+. .++|+|+++|.++++++.|++|+++
T Consensus 74 ~d~~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~--lt~~lA~~~-~~~G~V~~vD~~~~~~~~A~~~~~~ 150 (266)
T d1o54a_ 74 IDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGA--MCAVLARAV-GSSGKVFAYEKREEFAKLAESNLTK 150 (266)
T ss_dssp HHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHT-TTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCH--HHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 3566666555569999999999999999999999999999998 888998764 4579999999999999999999999
Q ss_pred hcCce--EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 92 VVGWV--SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 92 a~G~~--I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+ |+. +++..+|..+.+.. ..||.||+|.. +..++++.+ +.|+|||.+++--
T Consensus 151 ~-g~~~~v~~~~~d~~~~~~~-~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 151 W-GLIERVTIKVRDISEGFDE-KDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp T-TCGGGEEEECCCGGGCCSC-CSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred h-ccccCcEEEeccccccccc-cceeeeEecCC--CHHHHHHHHHhhcCCCCEEEEEe
Confidence 9 986 99999997554332 47999999974 456677755 6779999999753
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=3.3e-15 Score=128.67 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=84.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
.||-|--..++-+.+.+..-.+|||+|||+|+ .|++||.+.. ++|+|+++|.++++++.|++|+++. +.. |+++
T Consensus 67 qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~--lt~~la~~v~-~~g~V~~vD~~e~~~~~A~~n~~~~-~~~~nv~~~ 142 (250)
T d1yb2a1 67 QIISEIDASYIIMRCGLRPGMDILEVGVGSGN--MSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEF-YDIGNVRTS 142 (250)
T ss_dssp --------------CCCCTTCEEEEECCTTSH--HHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTT-SCCTTEEEE
T ss_pred cccCHHHHHHHHHHcCCCCcCEEEEeeeeCcH--HHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHh-cCCCceEEE
Confidence 36655555566666777777999999999998 8889987754 5799999999999999999999997 544 9999
Q ss_pred ecchHHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.||..+.+++ ..||.||+|.-. -.++++.+ +.|+|||++++-
T Consensus 143 ~~Di~~~~~~-~~fD~V~ld~p~--p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 143 RSDIADFISD-QMYDAVIADIPD--PWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp CSCTTTCCCS-CCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEE
T ss_pred Eeeeeccccc-ceeeeeeecCCc--hHHHHHHHHHhcCCCceEEEE
Confidence 9999887654 479999999743 23567754 677999999984
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.5e-14 Score=119.53 Aligned_cols=113 Identities=16% Similarity=0.025 Sum_probs=89.4
Q ss_pred HHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 31 ELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
.++..|+... ..++|||||||+|+ ++.++|.. ..+++|.||+++++++.|++++++. +..++++.++|.+..
T Consensus 41 ~~~~~la~~~~~~g~~VLdIGcG~G~--~a~~~a~~---~~~~v~~id~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 41 PYMHALAAAASSKGGRVLEVGFGMAI--AASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVA 114 (229)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCTTSH--HHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHG
T ss_pred HHHHHHHHhhccCCCeEEEeeccchH--HHHHHHHc---CCCeEEEeCCCHHHHHHHHHHhhhc-ccccccccccccccc
Confidence 4445554433 45699999999998 77777632 2468999999999999999999988 777999999999988
Q ss_pred cCC--CCccEEEEeCCCccc--------HHHHHHh-ccCCCceEEEEeCCCC
Q 027409 109 GEL--KGVDFLVVDCTSKDF--------ARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 109 ~~L--~~fDfVFIDa~K~~Y--------~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
..+ .+||.||+|+....+ ..+|+.+ +.|+|||++++.|...
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~ 166 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 166 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred cccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 877 389999999876655 3466644 6789999999877643
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.6e-14 Score=127.13 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=98.5
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHh
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYD 91 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~ 91 (223)
..|...+.-.-.||-|.-..++-.++.+..-.+|||+|||.|+ .|++||.+.. ++|+|+|+|+++++++.|++|+++
T Consensus 69 ~d~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~--lt~~LAr~vg-~~G~V~t~E~~~~~~~~A~~n~~~ 145 (324)
T d2b25a1 69 EDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGG--MSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKH 145 (324)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSH--HHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccH--HHHHHHHHhC-CCcEEEEecCCHHHHHHHHHHHHH
Confidence 3566655444457888878888888899999999999999998 8889998764 579999999999999999999997
Q ss_pred hcC----------ce--EEEEecchHHHhcCC--CCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEe
Q 027409 92 VVG----------WV--SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 92 a~G----------~~--I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+ + +. ++++.||..+....+ ..||.||+|--. -.++++.+ +.|+|||.+++-
T Consensus 146 ~-~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~--P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 146 W-RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp H-HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred h-hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcC--HHHHHHHHHHhccCCCEEEEE
Confidence 5 3 12 999999988766665 379999999621 12356644 667999999973
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=1.4e-14 Score=122.38 Aligned_cols=118 Identities=11% Similarity=-0.043 Sum_probs=89.7
Q ss_pred CCcHH-HHHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcC----CCCcEEEEEeCCchHHHHHHHHHHhh----c
Q 027409 24 IKESG-VAELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAAR----HTCARHVCIVPDERSRLAYVKAMYDV----V 93 (223)
Q Consensus 24 ii~p~-~g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~----~~~g~i~TIE~d~e~~~~Ar~~~~~a----~ 93 (223)
+..|. .+.+|..|. .+.+-.+|||||||+|| .|..||.-+. .++++|++||++++.++.|++|+.+. .
T Consensus 61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY--~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~ 138 (223)
T d1r18a_ 61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGY--LTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML 138 (223)
T ss_dssp ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSH--HHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHHHHHHhhccCCCCeEEEecCCCCH--HHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc
Confidence 55666 456666554 45566899999999999 5545554332 23469999999999999999998764 0
Q ss_pred Cce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 94 GWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 94 G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+.. |+++.||+.+..+...+||.||++|.-...++.| +..|++||.+|+-
T Consensus 139 ~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l--~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 139 DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTEL--INQLASGGRLIVP 189 (223)
T ss_dssp HHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHH--HHTEEEEEEEEEE
T ss_pred CccEEEEEecccccccccccceeeEEEEeechhchHHH--HHhcCCCcEEEEE
Confidence 333 9999999998777667899999999988877643 4567999999873
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.51 E-value=1.8e-14 Score=121.34 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=99.6
Q ss_pred HHHHHhhcc---cCCCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHH
Q 027409 12 KAYIDTVKS---CENIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKA 88 (223)
Q Consensus 12 ~ayl~~l~~---~~~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~ 88 (223)
.||.+.-.+ ++.+..|..-..+-.++...+-.+|||||||+|| +|..||.-+ ++++++||++++.++.|+++
T Consensus 46 ~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY--~taila~l~---g~~V~~ie~~~~l~~~a~~~ 120 (215)
T d1jg1a_ 46 YAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGW--NAALISEIV---KTDVYTIERIPELVEFAKRN 120 (215)
T ss_dssp GTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSH--HHHHHHHHH---CSCEEEEESCHHHHHHHHHH
T ss_pred cccccCCcccchhhhhhhhhhHHHHHHhhccCccceEEEecCCCCh--hHHHHHHhh---CceeEEEeccHHHHHHHHHH
Confidence 356554333 2237788876666667788888999999999999 554555322 47899999999999999999
Q ss_pred HHhhcCce-EEEEecchHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 89 MYDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 89 ~~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
+++. |+. ++++.||+.+-.+...+||-|++.|.-...++.| +..|++||.+|+-
T Consensus 121 l~~~-g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~l--~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 121 LERA-GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPL--IEQLKIGGKLIIP 175 (215)
T ss_dssp HHHT-TCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHH--HHTEEEEEEEEEE
T ss_pred HHHc-CCceeEEEECccccCCcccCcceeEEeecccccCCHHH--HHhcCCCCEEEEE
Confidence 9999 998 9999999998777767999999999988776554 3456899999984
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.44 E-value=2e-13 Score=115.60 Aligned_cols=113 Identities=14% Similarity=0.019 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 23 NIKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 23 ~ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.+..|.....+-..+.+.+-.+|||||||+|| .|..||.- .++|++||++++..+.|++++.+. . .++++.|
T Consensus 52 ~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy--~ta~La~l----~~~V~aiE~~~~~~~~A~~~~~~~-~-nv~~~~~ 123 (224)
T d1vbfa_ 52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGY--YTALIAEI----VDKVVSVEINEKMYNYASKLLSYY-N-NIKLILG 123 (224)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTC-S-SEEEEES
T ss_pred ceehhhhHHHHHHHhhhcccceEEEecCCCCH--HHHHHHHH----hcccccccccHHHHHHHHHHHhcc-c-ccccccC
Confidence 36788876666677788999999999999999 66566643 479999999999999999998765 2 3999999
Q ss_pred chHHHhcCCCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 103 QAEEVMGELKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 103 dA~evL~~L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+.+..+.-.+||.|++.+.-+..++.+ +..|++||.+|+-
T Consensus 124 d~~~g~~~~~pfD~Iiv~~a~~~ip~~l--~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 124 DGTLGYEEEKPYDRVVVWATAPTLLCKP--YEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCGGGCCEEEEEESSBBSSCCHHH--HHTEEEEEEEEEE
T ss_pred chhhcchhhhhHHHHHhhcchhhhhHHH--HHhcCCCCEEEEE
Confidence 9988777656899999999877776543 4567999999983
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.3e-13 Score=113.57 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV 101 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~ 101 (223)
..+|+.-+.|..++.+..-++|||||||+|+ .++.||.. .+++|+.||+++++++.|+++.++. |+. |+++.
T Consensus 16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~--~~~~la~~---~~~~v~GvD~s~~~~~~ar~~~~~~-gl~~~v~~~~ 89 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGE--MLCTWARD---HGITGTGIDMSSLFTAQAKRRAEEL-GVSERVHFIH 89 (245)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCH--HHHHHHHH---TCCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEE
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCH--HHHHHHHh---cCCEEEEEecccchhhHHHHHHHHh-hccccchhhh
Confidence 5677777777777777788999999999997 66666542 2579999999999999999999999 987 99999
Q ss_pred cchHHHhcCCCCccEEEEe-C--CCcccHHHHHHh-ccCCCceEEEEeCCCCCC
Q 027409 102 RQAEEVMGELKGVDFLVVD-C--TSKDFARVLRFA-RFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 102 GdA~evL~~L~~fDfVFID-a--~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~g 151 (223)
||+.+..+. ++||+|+.= + .-.++..+|+.+ +.|+|||.++..+..++.
T Consensus 90 ~d~~~~~~~-~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~ 142 (245)
T d1nkva_ 90 NDAAGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ 142 (245)
T ss_dssp SCCTTCCCS-SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred hHHhhcccc-CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence 999886443 579999842 2 234568888866 567999999988765443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.42 E-value=1.8e-13 Score=108.20 Aligned_cols=109 Identities=9% Similarity=0.170 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHh
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVM 108 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL 108 (223)
.+.++|-.-.+-++||++|||+|. .++..+ .+.. .+|+++|.|++.++.+++|++.. |+. ++++.+|+.+.|
T Consensus 4 ~~fn~l~~~~~g~~vlDl~~GtG~--~~iea~--~rga-~~v~~ve~~~~a~~~~~~n~~~~-~~~~~~~ii~~D~~~~l 77 (152)
T d2esra1 4 AIFNMIGPYFNGGRVLDLFAGSGG--LAIEAV--SRGM-SAAVLVEKNRKAQAIIQDNIIMT-KAENRFTLLKMEAERAI 77 (152)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCH--HHHHHH--HTTC-CEEEEECCCHHHHHHHHHHHHTT-TCGGGEEEECSCHHHHH
T ss_pred HHHHHHHhhCCCCeEEEcCCccCH--HHHHHH--HhCc-ceeeeehhchhhhhhhhhhhhhc-ccccchhhhcccccccc
Confidence 345666555678899999999996 665432 2322 48999999999999999999998 887 999999999988
Q ss_pred cCC-CCccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEe
Q 027409 109 GEL-KGVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~L-~~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~D 145 (223)
+.. ++||+||+|. .+..|.+.++.+ +.+++||+|+..
T Consensus 78 ~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 78 DCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp HHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 765 5899999997 467788888866 356999999974
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.39 E-value=4.5e-13 Score=109.43 Aligned_cols=110 Identities=20% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
.+++|.. +.+.+.++|||||||+|. .+++|+. .+++|+.+|+++++++.|++++++. |.. |+++.+|+.+
T Consensus 4 ~~~ll~~-~~l~~~~rVLDiGcG~G~--~~~~l~~----~~~~v~gvD~s~~~i~~A~~~~~~~-~~~~i~~~~~d~~~- 74 (231)
T d1vl5a_ 4 LAKLMQI-AALKGNEEVLDVATGGGH--VANAFAP----FVKKVVAFDLTEDILKVARAFIEGN-GHQQVEYVQGDAEQ- 74 (231)
T ss_dssp HHHHHHH-HTCCSCCEEEEETCTTCH--HHHHHGG----GSSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCC-C-
T ss_pred HHHHHHh-cCCCCcCEEEEecccCcH--HHHHHHH----hCCEEEEEECCHHHHhhhhhccccc-cccccccccccccc-
Confidence 4555555 677778999999999998 7777753 2579999999999999999999999 988 9999999987
Q ss_pred hcC-CCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEE-eCC
Q 027409 108 MGE-LKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAF-KNA 147 (223)
Q Consensus 108 L~~-L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~-DNv 147 (223)
++- -+.||+|+.-..-. +....|..+ +.|+|||.++. |+.
T Consensus 75 l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 75 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 442 24799999876543 345666544 67899995554 443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=1.2e-12 Score=108.04 Aligned_cols=109 Identities=10% Similarity=0.062 Sum_probs=82.7
Q ss_pred HHHHHHHHH---hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 30 AELLSAMAA---GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~---~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
..|+..+.+ ..++++|||||||+|- .++.|+.. +.++|+||+++++++.|++++++. +..|+++.||+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~iLDiGcGtG~--~~~~l~~~----~~~v~gvD~s~~mi~~a~~~~~~~-~~~i~~~~~d~~~ 99 (251)
T d1wzna1 27 IDFVEEIFKEDAKREVRRVLDLACGTGI--PTLELAER----GYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVLE 99 (251)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGGG
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCCc--cchhhccc----ceEEEEEeeccccccccccccccc-cccchheehhhhh
Confidence 446655553 3356789999999997 67777642 568999999999999999999998 8889999999977
Q ss_pred HhcCCCCccEEEEeCCC------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 107 VMGELKGVDFLVVDCTS------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. +--+.||+|++=..- ++...+|..+ +.|+|||+++.|-
T Consensus 100 l-~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 100 I-AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp C-CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 211589999974322 2334666644 6789999999874
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=2.3e-12 Score=110.63 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 26 ESGVAELLSAMAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
.|.+.-.|.+|.+..+ .++||++|||+|+ .+++++. .+++++.+|+|+++++.|++|.++. |++++++.||+
T Consensus 104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~--l~i~aa~----~g~~V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~ 176 (254)
T d2nxca1 104 HETTRLALKALARHLRPGDKVLDLGTGSGV--LAIAAEK----LGGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSL 176 (254)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEETCTTSH--HHHHHHH----TTCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCH
T ss_pred cchhhHHHHHHHhhcCccCEEEEcccchhH--HHHHHHh----cCCEEEEEECChHHHHHHHHHHHHc-CCceeEEeccc
Confidence 4556777888877664 5799999999998 6766653 2579999999999999999999999 99999999999
Q ss_pred HHHhcCCCCccEEEEeCCCcccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 105 EEVMGELKGVDFLVVDCTSKDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~K~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
.+.++. ++||+|+...-.....++++.+ +.|+|||.++.-.++.
T Consensus 177 ~~~~~~-~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~ 221 (254)
T d2nxca1 177 EAALPF-GPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp HHHGGG-CCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred cccccc-cccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecch
Confidence 887654 5899999887666667777655 5679999999765543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.33 E-value=2.7e-12 Score=106.60 Aligned_cols=111 Identities=8% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 27 SGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 27 p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
+...+|+..++... .+++|||||||+|. .++.||.. +.+++.||.++++++.|++.+... |..|+++.||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~--~~~~l~~~----g~~v~GvD~S~~ml~~A~~~~~~~-~~~v~~~~~d~ 93 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGN--LTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTST--THHHHGGG----SSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCcCCH--HHHHHHHh----CCccEeeccchhhhhhcccccccc-Cccceeeccch
Confidence 34566776666554 56899999999998 77777642 568999999999999999999988 88899999999
Q ss_pred HHHhcCCCCccEEEEeCC-------CcccHHHHHHh-ccCCCceEEEEe
Q 027409 105 EEVMGELKGVDFLVVDCT-------SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 105 ~evL~~L~~fDfVFIDa~-------K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.+. +--++||+|++=.. .++-..+|..+ +.|+|||++|+|
T Consensus 94 ~~~-~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 94 SNL-NINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGC-CCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhh-cccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 874 21248999996322 22334567655 677999999976
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=1.8e-12 Score=105.23 Aligned_cols=107 Identities=9% Similarity=0.008 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEE 106 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~e 106 (223)
.++|...+...+.++|||||||+|+ .++++|.. ..+++.+|+|+..++.|++|++.. ++. ++++.+|..+
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~--~~~~la~~----~~~v~~iD~s~~~i~~a~~n~~~~-~l~~~~i~~~~~d~~~ 113 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGV--IGIALADE----VKSTTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHT-TCTTSCEEEEECSTTT
T ss_pred HHHHHHhCCcCCCCeEEEEeecCCh--hHHHHHhh----ccccceeeeccccchhHHHHHHHh-CCccceEEEEEcchhh
Confidence 3555555567789999999999998 77777532 458999999999999999999988 775 9999999987
Q ss_pred HhcCCCCccEEEEeCC----CcccHHHHHHh-ccCCCceEEEE
Q 027409 107 VMGELKGVDFLVVDCT----SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~----K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.++. +.||+|+.|.- ++...++++.+ +.|+|||.++.
T Consensus 114 ~~~~-~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 114 NVKD-RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp TCTT-SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcc-CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence 5543 47999999853 22235566644 67799997654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=5.5e-12 Score=104.15 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchH
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAE 105 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ 105 (223)
+...+||-..+.+..-.+|||||||+|. .+..|+.. .++++.||+++++++.|+++..+. |+. +.++.+|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~--~~~~la~~----~~~v~gvD~S~~~l~~A~~~~~~~-~~~~~~~~~~d~~ 74 (234)
T d1xxla_ 2 HHSLGLMIKTAECRAEHRVLDIGAGAGH--TALAFSPY----VQECIGVDATKEMVEVASSFAQEK-GVENVRFQQGTAE 74 (234)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSH--HHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHH-TCCSEEEEECBTT
T ss_pred chHHHHHHHHhCCCCCCEEEEeCCcCcH--HHHHHHHh----CCeEEEEeCChhhhhhhhhhhccc-ccccccccccccc
Confidence 4567788888888888999999999998 77777532 579999999999999999999998 988 999999997
Q ss_pred HHhcC-CCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEE
Q 027409 106 EVMGE-LKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 106 evL~~-L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+ ++- -+.||+|+.=..-. +-..+|..+ +.|+|||.+++
T Consensus 75 ~-~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 75 S-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp B-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred c-ccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEE
Confidence 7 442 24799999865433 346677654 67899996655
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.28 E-value=8.1e-12 Score=107.05 Aligned_cols=108 Identities=14% Similarity=-0.010 Sum_probs=83.8
Q ss_pred HHHHHH----HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH
Q 027409 32 LLSAMA----AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV 107 (223)
Q Consensus 32 fL~~L~----~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev 107 (223)
+|..|+ +..+|++|||||||+|+ .++.||.. .+.+++++.||+++++++.|+++++.. +..++++.+|+.+.
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~--~~~~la~~-~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGY--LGLVLMPL-LPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTH--HHHHHTTT-SCTTCEEEEEECCHHHHHHHHHHHHSS-SSEEEEEESCTTTC
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCH--HHHHHHHh-CCCCCEEEEEecchhHhhhhhcccccc-cccccccccccccc
Confidence 445554 46799999999999998 77777542 345689999999999999999999998 88899999998763
Q ss_pred hcCCCCccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEE
Q 027409 108 MGELKGVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 108 L~~L~~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+--++||+|+.-..-. +-...++.+ +.++|||.+++
T Consensus 90 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii 129 (281)
T d2gh1a1 90 -ELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 129 (281)
T ss_dssp -CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEE
T ss_pred -cccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEE
Confidence 3224799999886432 335667644 67899997665
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.26 E-value=7e-12 Score=102.18 Aligned_cols=110 Identities=12% Similarity=0.202 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
.++.++|.....-++||++.||+|. .++..+ .+. -.+++.+|.|++..+.+++|++.. +.. ++++.+||.+.
T Consensus 30 ealFn~l~~~~~~~~vLDlfaGsG~--~g~ea~--srG-a~~v~~ve~~~~a~~~~~~N~~~~-~~~~~~~i~~~D~~~~ 103 (182)
T d2fhpa1 30 ESIFNMIGPYFDGGMALDLYSGSGG--LAIEAV--SRG-MDKSICIEKNFAALKVIKENIAIT-KEPEKFEVRKMDANRA 103 (182)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCH--HHHHHH--HTT-CSEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEccccccc--ccceee--ecc-hhHHHHHHHHHHHHHHHHHHhhhh-hcccccccccccchhh
Confidence 5667777767778999999999996 565332 221 137999999999999999999998 877 99999999998
Q ss_pred hcCC----CCccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEe
Q 027409 108 MGEL----KGVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFK 145 (223)
Q Consensus 108 L~~L----~~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~D 145 (223)
|+.+ .+||+||+|. .+..|.+.++.+ ..++++|+||+-
T Consensus 104 l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 104 LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 8764 3799999998 678899999866 246999999973
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=7.3e-12 Score=110.27 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=86.0
Q ss_pred HHHHHHHHhcC-CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH
Q 027409 31 ELLSAMAAGWN-AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV 107 (223)
Q Consensus 31 ~fL~~L~~~~~-ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev 107 (223)
.--.++....+ -++||++||++|. .++++|.+ . .++|+++|.+++.++.|++|++.. |+. ++++.||+.+.
T Consensus 134 ~~r~~~~~~~~~g~~VLDl~~g~G~--~si~~a~~--g-a~~V~~vD~s~~al~~a~~N~~~n-gl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 134 ENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIA--G-ADEVIGIDKSPRAIETAKENAKLN-GVEDRMKFIVGSAFEE 207 (324)
T ss_dssp HHHHHHGGGCCTTCEEEETTCTTTH--HHHHHHHT--T-CSEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEESCHHHH
T ss_pred hHHHHHHhhcCCCCeeecccCcccc--hhhhhhhc--C-CcEEEeecCCHHHHHHHHHHHHHc-CCCccceeeechhhhh
Confidence 33344455444 6899999999997 77776643 1 248999999999999999999999 996 99999999998
Q ss_pred hcCC----CCccEEEEeCCC------------cccHHHHHHh-ccCCCceEEEEe
Q 027409 108 MGEL----KGVDFLVVDCTS------------KDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 108 L~~L----~~fDfVFIDa~K------------~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+..+ .+||+|++|.-. ..|.+++..+ ++++|||+|+.=
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7654 379999999853 3577888754 677999987763
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=8.9e-12 Score=109.63 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=83.4
Q ss_pred HHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--
Q 027409 35 AMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL-- 111 (223)
Q Consensus 35 ~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L-- 111 (223)
.+++..+-++||+++|++|. .++++|.. +.+|+++|.+++.++.|++|++.. |+. ++++.+|+.+.++.+
T Consensus 139 ~~~~~~~g~rVLDl~~gtG~--~s~~~a~g----~~~V~~vD~s~~al~~a~~n~~~n-gl~~~~~i~~d~~~~~~~~~~ 211 (318)
T d1wxxa2 139 LYMERFRGERALDVFSYAGG--FALHLALG----FREVVAVDSSAEALRRAEENARLN-GLGNVRVLEANAFDLLRRLEK 211 (318)
T ss_dssp HHGGGCCEEEEEEETCTTTH--HHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHT-TCTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCCCeeeccCCCCcH--HHHHHHhc----CCcEEeecchHHHHHHHHHHHHHc-CCCCcceeeccHHHHhhhhHh
Confidence 44556678999999999996 67776643 458999999999999999999999 998 999999999987765
Q ss_pred --CCccEEEEeCC------------CcccHHHHHH-hccCCCceEEEEe
Q 027409 112 --KGVDFLVVDCT------------SKDFARVLRF-ARFSNKGAVLAFK 145 (223)
Q Consensus 112 --~~fDfVFIDa~------------K~~Y~~~f~~-~~~l~~GgvIV~D 145 (223)
+.||+|++|.- ...|.+++.. +++++|||+|+.-
T Consensus 212 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~ 260 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 260 (318)
T ss_dssp TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 37999999963 2234555553 3677999998873
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.22 E-value=3.8e-11 Score=96.94 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhc
Q 027409 31 ELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMG 109 (223)
Q Consensus 31 ~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~ 109 (223)
++|.. +...+|.+|||||||+|+ .+++||. .+.++|.+|+++++++.|+++.++. |++ +++..+|+.+.-.
T Consensus 21 ~~~~~-~~~~~~grvLDiGcG~G~--~~~~la~----~g~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~d~~~~~~ 92 (198)
T d2i6ga1 21 DVLAA-AKVVAPGRTLDLGCGNGR--NSLYLAA----NGYDVTAWDKNPASMANLERIKAAE-GLDNLQTDLVDLNTLTF 92 (198)
T ss_dssp HHHHH-HTTSCSCEEEEETCTTSH--HHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHT-TCTTEEEEECCTTTCCC
T ss_pred HHHHH-cccCCCCcEEEECCCCCH--HHHHHHH----HhhhhccccCcHHHHHHHHHHhhhc-cccchhhhheecccccc
Confidence 44543 467789999999999998 8888874 2568999999999999999999998 998 9999999877433
Q ss_pred CCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEeC
Q 027409 110 ELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 110 ~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
. +.||+|+.-. .+.+...++..+ +.++|||+++...
T Consensus 93 ~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 93 D-GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp C-CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2 5799999765 344556788654 6779999887753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=1.9e-11 Score=107.76 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=80.5
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc---e-EEEEecchHHHhcCCC
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW---V-SEVIVRQAEEVMGELK 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~---~-I~li~GdA~evL~~L~ 112 (223)
...+||+||.||.|.|. .+-+++ ...+..+|+.+|+||+.++.|+++|... .+. . ++++.|||.+.|.+.+
T Consensus 74 ~~~~pk~VLiiG~G~G~--~~~~ll--~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 149 (312)
T d1uira_ 74 THPEPKRVLIVGGGEGA--TLREVL--KHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE 149 (312)
T ss_dssp HSSCCCEEEEEECTTSH--HHHHHT--TSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC
T ss_pred hCCCcceEEEeCCCchH--HHHHHH--hcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcC
Confidence 34689999999999996 333432 2345679999999999999999998642 122 2 9999999999998764
Q ss_pred -CccEEEEeCCC---------ccc-HHHHHHh-ccCCCceEEEEe
Q 027409 113 -GVDFLVVDCTS---------KDF-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 113 -~fDfVFIDa~K---------~~Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
.||+|++|..- ..| .+||+.+ +.|++||++++.
T Consensus 150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 79999999721 133 5788877 567999999984
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.19 E-value=8.2e-11 Score=96.55 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=84.3
Q ss_pred HHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH
Q 027409 31 ELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE 106 (223)
Q Consensus 31 ~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e 106 (223)
+.+..+++- ..-.+|||||||+|. .++.|+.....++.+||.||+++++++.|++..++. +.. ++++.+|+.+
T Consensus 27 ~~i~~~~~~~~~~~~~vLDlGCGtG~--~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-~~~~~~~~~~~d~~~ 103 (225)
T d1im8a_ 27 TAIGMLAERFVTADSNVYDLGCSRGA--ATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDIRH 103 (225)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCTTCH--HHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS-CCSSCEEEECSCTTT
T ss_pred HHHHHHHHHhcCCCCEEEEeccchhh--HHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh-cccchhhhccchhhc
Confidence 344444442 344589999999998 777787766567889999999999999999999987 665 8999999876
Q ss_pred HhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 107 VMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
. ..+.+|+|+.-.. .++...+|+.+ +.|+|||+++.-+..
T Consensus 104 ~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 104 V--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp C--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c--ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 3 2357888887532 34455778755 678999977775543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=8e-11 Score=94.65 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=79.1
Q ss_pred HHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHh
Q 027409 30 AELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL 108 (223)
..+.++|.. ..+-.+||++|||+|. .++..+ . .+++++.+|.|++.++.|++|++.. |+..++...++...+
T Consensus 29 e~lf~~l~~~~~~g~~vLDl~~G~G~--~~i~a~--~--~ga~vv~vD~~~~a~~~~~~N~~~~-~~~~~v~~~~~d~~~ 101 (171)
T d1ws6a1 29 KALFDYLRLRYPRRGRFLDPFAGSGA--VGLEAA--S--EGWEAVLVEKDPEAVRLLKENVRRT-GLGARVVALPVEVFL 101 (171)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCSSCH--HHHHHH--H--TTCEEEEECCCHHHHHHHHHHHHHH-TCCCEEECSCHHHHH
T ss_pred HHHHHHhhccccCCCeEEEeccccch--hhhhhh--h--ccchhhhcccCHHHHhhhhHHHHhh-ccccceeeeehhccc
Confidence 455556664 3567899999999996 565432 1 3678999999999999999999999 988666667776544
Q ss_pred cCC----CCccEEEEeC--CCcccHHHHHHh--ccCCCceEEEEe
Q 027409 109 GEL----KGVDFLVVDC--TSKDFARVLRFA--RFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~L----~~fDfVFIDa--~K~~Y~~~f~~~--~~l~~GgvIV~D 145 (223)
+.. ++||+||+|. .++.+..+.+++ .++++||+||.-
T Consensus 102 ~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 102 PEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp HHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred ccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence 332 4799999996 444444333444 346999999863
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.4e-11 Score=99.84 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=78.5
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDf 116 (223)
...+.++|||||||+|. .+..|+ .+...+|+.||+++++++.||++++.. |.. ++++.+|+.+.-..-+.||+
T Consensus 57 ~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~~vD~s~~~l~~ak~~~~~~-~~~~~~f~~~d~~~~~~~~~~fD~ 130 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGR--ITKRLL---LPLFREVDMVDITEDFLVQAKTYLGEE-GKRVRNYFCCGLQDFTPEPDSYDV 130 (222)
T ss_dssp -CCCCSEEEEETCTTTH--HHHHTT---TTTCSEEEEEESCHHHHHHHHHHTGGG-GGGEEEEEECCGGGCCCCSSCEEE
T ss_pred CCCCCCEEEEeccCCCH--hhHHHH---HhcCCEEEEeecCHHHhhccccccccc-cccccccccccccccccccccccc
Confidence 34567899999999997 554543 222458999999999999999999998 887 99999999884333358999
Q ss_pred EEEeCCCccc-----HHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 117 LVVDCTSKDF-----ARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 117 VFIDa~K~~Y-----~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
|+.-..-.+. .+++..+ +.|+|||.++. |++..
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~ 170 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 170 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence 9998765554 3466655 56788886554 44433
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.17 E-value=1.2e-10 Score=93.68 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=75.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcC-CCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGE-LKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~-L~~fDfVFI 119 (223)
+-.+|||||||+|. .++.||. .+.+|+.||+++++++.|++.+... +..+.++.+|+.+. +. -+.||+|+.
T Consensus 37 ~~~~ILDiGcG~G~--~~~~la~----~~~~v~giD~S~~~i~~ak~~~~~~-~~~~~~~~~d~~~l-~~~~~~fD~I~~ 108 (226)
T d1ve3a1 37 KRGKVLDLACGVGG--FSFLLED----YGFEVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKL-SFEDKTFDYVIF 108 (226)
T ss_dssp SCCEEEEETCTTSH--HHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSC-CSCTTCEEEEEE
T ss_pred CCCEEEEECCCcch--hhhhHhh----hhcccccccccccchhhhhhhhccc-cccccccccccccc-cccCcCceEEEE
Confidence 44689999999998 7777763 3679999999999999999999998 87789999999883 42 358999987
Q ss_pred eCCCcc-----cHHHHHHh-ccCCCceEEEEe
Q 027409 120 DCTSKD-----FARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 120 Da~K~~-----Y~~~f~~~-~~l~~GgvIV~D 145 (223)
=..=.. ..++|..+ +.|+|||.++.+
T Consensus 109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence 654333 23456544 677999987655
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=1.2e-10 Score=96.53 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfV 117 (223)
....|||||||.|. +++.||.. .++..++.||+++.++..|.+..++. |+. |.++.|||.+.+..+ ..+|.|
T Consensus 29 ~~PlvLeIGcG~G~--~~~~lA~~--~p~~~~iGiD~~~~~i~~a~~~~~~~-~l~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQ--FISGMAKQ--NPDINYIGIELFKSVIVTAVQKVKDS-EAQNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp CCCEEEEECCTTSH--HHHHHHHH--CTTSEEEEECSCHHHHHHHHHHHHHS-CCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCceEEEEEecCcH--HHHHHHHh--CCCCcEEEeecchHHHHHHHHHHHHH-hccCchhcccchhhhhcccCchhhhcc
Confidence 44579999999998 77788753 56789999999999999999999999 999 999999998876545 368887
Q ss_pred EEeC---CCc--c------cHHHHHHh-ccCCCceEEE
Q 027409 118 VVDC---TSK--D------FARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 118 FIDa---~K~--~------Y~~~f~~~-~~l~~GgvIV 143 (223)
++-. +.. + .+++++.+ +.|+|||+|.
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~ 141 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIH 141 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEE
Confidence 7654 211 1 25788866 6779999765
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.9e-10 Score=93.28 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHh
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVM 108 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL 108 (223)
..+.++|-....-.+||+++||+|. .++-.+ .+. -.+++.+|.|++.++.+++|++.. +.. ++++.+|+.+.|
T Consensus 32 e~lfn~l~~~~~~~~vLDlfaGsG~--~gieal--srG-a~~v~~VE~~~~a~~~~k~N~~~~-~~~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 32 ETLFNWLAPVIVDAQCLDCFAGSGA--LGLEAL--SRY-AAGATLIEMDRAVSQQLIKNLATL-KAGNARVVNSNAMSFL 105 (183)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCH--HHHHHH--HTT-CSEEEEECSCHHHHHHHHHHHHHT-TCCSEEEECSCHHHHH
T ss_pred HHHHhhhhcccchhhhhhhhccccc--eeeeEE--ecC-cceeEEEEEeechhhHHHHHHhhc-cccceeeeeecccccc
Confidence 5666777666677899999999996 554321 122 238999999999999999999998 887 999999999999
Q ss_pred cCC-CCccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEe
Q 027409 109 GEL-KGVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFK 145 (223)
Q Consensus 109 ~~L-~~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~D 145 (223)
... .+||+||+|- .+..|.+.++.+ ..++++|+|++-
T Consensus 106 ~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp SSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 876 4899999997 466788888876 246999999973
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.12 E-value=1.4e-10 Score=98.41 Aligned_cols=101 Identities=13% Similarity=-0.008 Sum_probs=78.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcC-CCCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGE-LKGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~-L~~fDf 116 (223)
.+..+|||||||+|. .++.||.. .+.+|+.||+++.+++.|++..+.. |+. |+++.+|+.+. +- -+.||+
T Consensus 66 ~~~~~vLDiGcG~G~--~~~~la~~---~~~~v~gvD~s~~~i~~a~~~~~~~-gl~~~v~~~~~d~~~l-~~~~~sfD~ 138 (282)
T d2o57a1 66 QRQAKGLDLGAGYGG--AARFLVRK---FGVSIDCLNIAPVQNKRNEEYNNQA-GLADNITVKYGSFLEI-PCEDNSYDF 138 (282)
T ss_dssp CTTCEEEEETCTTSH--HHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHHH-TCTTTEEEEECCTTSC-SSCTTCEEE
T ss_pred CCCCEEEEeCCCCcH--HHhhhhcc---CCcEEEEEeccchhhhhhhcccccc-cccccccccccccccc-cccccccch
Confidence 456799999999997 67677643 2569999999999999999999999 997 99999999873 42 247999
Q ss_pred EEEeCCC---cccHHHHHHh-ccCCCceEEEEeCC
Q 027409 117 LVVDCTS---KDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 117 VFIDa~K---~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
|+.=..- .+...+|..+ +.|+|||.+++-+.
T Consensus 139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9864332 2345667644 67899998776554
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.11 E-value=2.5e-10 Score=95.46 Aligned_cols=100 Identities=10% Similarity=-0.059 Sum_probs=77.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCccE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGVDF 116 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~fDf 116 (223)
.+.++|||||||+|. .+..++.+ ..++++.||+++++++.|++.++.. +.. +.++.+|+....... +.||+
T Consensus 23 ~~~~~VLDlGCG~G~--~~~~~~~~---~~~~v~GiD~S~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGG--DLLKYERA---GIGEYYGVDIAEVSINDARVRARNM-KRRFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp CTTCEEEEETCTTTT--THHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTS-CCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCcCEEEEecccCcH--HHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHhc-CCCcceEEEEcchhhhcccccccceE
Confidence 456899999999997 55566543 2368999999999999999999887 665 999999997643334 47999
Q ss_pred EEEeCCCccc-------HHHHHHh-ccCCCceEEEEe
Q 027409 117 LVVDCTSKDF-------ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y-------~~~f~~~-~~l~~GgvIV~D 145 (223)
|+.-..-..+ ..+|..+ +.|+|||++|.+
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 9987654443 3566644 677999999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=2.6e-10 Score=97.30 Aligned_cols=113 Identities=11% Similarity=0.021 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-----EEEEe
Q 027409 27 SGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-----SEVIV 101 (223)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-----I~li~ 101 (223)
..-.++|..+++..+.++|||||||+|. .++.||.. +.+||.+|.++++++.|+++..+. +.. ..+..
T Consensus 42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~--~~~~la~~----g~~v~gvD~S~~ml~~A~~~~~~~-~~~~~~~~~~~~~ 114 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCHRVLDVACGTGV--DSIMLVEE----GFSVTSVDASDKMLKYALKERWNR-RKEPAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCTTSH--HHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHT-TTSHHHHTCEEEE
T ss_pred HHHHHHHHHHhhhcCCCEEEEecCCCcH--HHHHHHHc----CCeeeeccCchHHHHHHHHHHHhc-ccccccceeeeee
Confidence 4456788888888899999999999998 77788743 468999999999999999999887 654 45555
Q ss_pred cchHHHh---cCCCCccEEEEeCCCc-----------ccHHHHHHh-ccCCCceEEEEeC
Q 027409 102 RQAEEVM---GELKGVDFLVVDCTSK-----------DFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 102 GdA~evL---~~L~~fDfVFIDa~K~-----------~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
.+.+..- +.-+.||+|++-.+-- +...+|..+ +.|+|||++|.|.
T Consensus 115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 6655432 2224799999754322 234577654 6789999999974
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.08 E-value=9.4e-11 Score=91.77 Aligned_cols=114 Identities=6% Similarity=-0.098 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV------- 96 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~------- 96 (223)
.+.|..-+++..| ...+..+||+||||+|+ .+++||.. |.+||.||+++++++.|++..+.. +..
T Consensus 4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~--~a~~la~~----G~~V~gvD~S~~~i~~a~~~~~~~-~~~~~~~~~~ 75 (201)
T d1pjza_ 4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQ--DMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQ-PHITSQGDFK 75 (201)
T ss_dssp SSTHHHHHHHHHH-CCCTTCEEEETTTCCSH--HHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSC-SEEEEETTEE
T ss_pred hHHHHHHHHHHHc-CCCCCCEEEEecCcCCH--HHHHHHHc----CCceEeecccHHHHHHHHHHhccc-cchhhhhhhh
Confidence 4667777887776 46678899999999999 88899753 689999999999999999988654 331
Q ss_pred ------EEEEecchHHHhcCC-CCccEEEEeCCC-----cccHHHHHHh-ccCCCceEEEEe
Q 027409 97 ------SEVIVRQAEEVMGEL-KGVDFLVVDCTS-----KDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 ------I~li~GdA~evL~~L-~~fDfVFIDa~K-----~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
++++.||+.+.-+.. ..||+|+.-..- +++..+++.+ +.++|||.++..
T Consensus 76 ~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 76 VYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred hccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 578899887743332 379988764332 2345667654 678999976543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.07 E-value=2.5e-10 Score=100.51 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=85.5
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecc
Q 027409 28 GVAELLSAMAA-GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQ 103 (223)
Q Consensus 28 ~~g~fL~~L~~-~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~Gd 103 (223)
++.+--..+++ ..+-++||++.|++|. .++++|.+ .-..|+++|.++..++.|++|++.. |+. ++++.+|
T Consensus 130 DqR~~r~~l~~~~~~g~~VLdlf~~~G~--~sl~aa~~---ga~~V~~vD~s~~a~~~a~~N~~~n-~l~~~~~~~i~~d 203 (317)
T d2b78a2 130 DQRQVRNELINGSAAGKTVLNLFSYTAA--FSVAAAMG---GAMATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMD 203 (317)
T ss_dssp GGHHHHHHHHHTTTBTCEEEEETCTTTH--HHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESC
T ss_pred HHHHHHHHHHHHhhCCCceeecCCCCcH--HHHHHHhC---CCceEEEecCCHHHHHHHHHHHHHh-cccCcceEEEEcc
Confidence 34444344444 4467899999999996 67665532 1247999999999999999999988 875 9999999
Q ss_pred hHHHhcCC----CCccEEEEeCCC------------cccHHHHHHh-ccCCCceEEEE
Q 027409 104 AEEVMGEL----KGVDFLVVDCTS------------KDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 104 A~evL~~L----~~fDfVFIDa~K------------~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
+.+.|+.+ .+||+|++|.-+ ..|.+++..+ ++++|||+|++
T Consensus 204 ~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~ 261 (317)
T d2b78a2 204 VFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA 261 (317)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99998765 379999999542 2577777754 67799999887
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.05 E-value=1.1e-09 Score=90.69 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=80.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfV 117 (223)
....|||||||.|- +++.+|.. .++..++.||+++.++..|.+..++. |++ |.++.|||.+++..+ ..+|.|
T Consensus 31 ~~plvLdIGcG~G~--~~~~lA~~--~p~~~~iGid~~~~~v~~a~~~~~~~-~l~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 31 DNPIHVEVGSGKGA--FVSGMAKQ--NPDINYIGIDIQKSVLSYALDKVLEV-GVPNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CCCEEEEESCTTSH--HHHHHHHH--CTTSEEEEEESCHHHHHHHHHHHHHH-CCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCeEEEEeccCCH--HHHHHHHH--CCCCceEEEeccHHHHHHHHHhhhhh-ccccceeeecCHHHHhhhccCCceehh
Confidence 44589999999997 77788754 45789999999999999999999999 999 999999999877655 368877
Q ss_pred EE---eCCCc--c------cHHHHHHh-ccCCCceEEE--EeC
Q 027409 118 VV---DCTSK--D------FARVLRFA-RFSNKGAVLA--FKN 146 (223)
Q Consensus 118 FI---Da~K~--~------Y~~~f~~~-~~l~~GgvIV--~DN 146 (223)
++ |-+.. + ..++|+.+ +.|+|||.+. +||
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 66 55422 2 36888866 6789999774 454
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.04 E-value=4.7e-10 Score=96.83 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=79.8
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc---------Cce-EEEEecchH
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV---------GWV-SEVIVRQAE 105 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~---------G~~-I~li~GdA~ 105 (223)
+....+|++||.||.|.|. ++..+ ...+..+|+.+|+||+.++.||++|.-.- ..+ ++++.+||.
T Consensus 67 l~~~~~p~~vLiiG~G~G~---~~~~~--l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~ 141 (276)
T d1mjfa_ 67 MLAHPKPKRVLVIGGGDGG---TVREV--LQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF 141 (276)
T ss_dssp HHHSSCCCEEEEEECTTSH---HHHHH--TTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH
T ss_pred hhcCCCCceEEEecCCchH---HHHHH--HHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH
Confidence 4456799999999999885 32322 23334689999999999999999985220 123 999999999
Q ss_pred HHhcCCCCccEEEEeCCCcc------c-HHHHHHh-ccCCCceEEEEe
Q 027409 106 EVMGELKGVDFLVVDCTSKD------F-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 106 evL~~L~~fDfVFIDa~K~~------Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
+.|++-+.||+|++|+--.. | .++|+.+ +.|++||++|+.
T Consensus 142 ~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 142 EFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp HHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 99986568999999985432 1 5778877 467999999875
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=3.8e-10 Score=91.72 Aligned_cols=93 Identities=12% Similarity=0.000 Sum_probs=69.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLV 118 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVF 118 (223)
.++++|||||||+|. .+.+|+. .+.+|++||+++++++.|+++... .++.||+.+ |+-- +.||+|+
T Consensus 41 ~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~giD~s~~~l~~a~~~~~~------~~~~~~~~~-l~~~~~~fD~ii 107 (246)
T d2avna1 41 KNPCRVLDLGGGTGK--WSLFLQE----RGFEVVLVDPSKEMLEVAREKGVK------NVVEAKAED-LPFPSGAFEAVL 107 (246)
T ss_dssp CSCCEEEEETCTTCH--HHHHHHT----TTCEEEEEESCHHHHHHHHHHTCS------CEEECCTTS-CCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCch--hcccccc----cceEEEEeeccccccccccccccc------ccccccccc-ccccccccccee
Confidence 367899999999998 7777763 267999999999999999975322 356799877 4432 4799998
Q ss_pred EeCC----CcccHHHHHHh-ccCCCceEEEEe
Q 027409 119 VDCT----SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~----K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
.=.. -.+..+.|+.+ +.|+|||+++++
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred eecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence 5332 33556677655 678999999885
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=5.6e-10 Score=95.57 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=80.0
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
...-++||++|||+|+ .++.+|.. ..++|+++|+||+.++.|++|++.. |++ |+++.|||.+.+++ ..||.
T Consensus 105 ~~~g~~VlD~~aG~G~--~~l~~a~~---~~~~V~avd~n~~a~~~~~~N~~~n-~l~~~v~~~~~D~~~~~~~-~~~D~ 177 (260)
T d2frna1 105 AKPDELVVDMFAGIGH--LSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLN-KVEDRMSAYNMDNRDFPGE-NIADR 177 (260)
T ss_dssp CCTTCEEEETTCTTTT--THHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHT-TCTTTEEEECSCTTTCCCC-SCEEE
T ss_pred cCCccEEEECcceEcH--HHHHHHHh---CCcEEEEecCCHHHHHHHHHHHHHh-CCCceEEEEEcchHHhccC-CCCCE
Confidence 3567899999999998 77776643 2469999999999999999999999 987 99999999987654 47999
Q ss_pred EEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 117 LVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
|+++--. ...++++ ++..+++||+|...
T Consensus 178 Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 178 ILMGYVV-RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EEECCCS-SGGGGHHHHHHHEEEEEEEEEE
T ss_pred EEECCCC-chHHHHHHHHhhcCCCCEEEEE
Confidence 9998533 3455666 55777999998553
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.00 E-value=2.9e-10 Score=93.48 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=75.2
Q ss_pred HHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC
Q 027409 33 LSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK 112 (223)
Q Consensus 33 L~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~ 112 (223)
+..+.+..++++|||||||+|. .+..|+. .+.+|++||+++++++.||+.+... ++++.||+.+.... +
T Consensus 12 ~~~~~~~~~~~~VLDiGcG~G~--~~~~l~~----~g~~v~giD~s~~~i~~a~~~~~~~----~~~~~~~~~~~~~~-~ 80 (225)
T d2p7ia1 12 VRAFTPFFRPGNLLELGSFKGD--FTSRLQE----HFNDITCVEASEEAISHAQGRLKDG----ITYIHSRFEDAQLP-R 80 (225)
T ss_dssp HHHHGGGCCSSCEEEESCTTSH--HHHHHTT----TCSCEEEEESCHHHHHHHHHHSCSC----EEEEESCGGGCCCS-S
T ss_pred HHHhhhhCCCCcEEEEeCCCcH--HHHHHHH----cCCeEEEEeCcHHHhhhhhcccccc----cccccccccccccc-c
Confidence 4566677899999999999997 5555542 2567999999999999999775544 89999998774322 5
Q ss_pred CccEEEEeCCCc---ccHHHHHHh--ccCCCceEEEEe
Q 027409 113 GVDFLVVDCTSK---DFARVLRFA--RFSNKGAVLAFK 145 (223)
Q Consensus 113 ~fDfVFIDa~K~---~Y~~~f~~~--~~l~~GgvIV~D 145 (223)
.||+|+.=.-=+ +-..++..+ +.++|||.++..
T Consensus 81 ~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 81 RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence 899999854322 124555544 457999999875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.99 E-value=1e-09 Score=96.74 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=70.1
Q ss_pred HHHHHHHHH-HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecch
Q 027409 29 VAELLSAMA-AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQA 104 (223)
Q Consensus 29 ~g~fL~~L~-~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA 104 (223)
.-+++.-++ ...+.++||.+.|++|. .++++|.+ +++||++|.++..++.|++|++.. |+. ++++.+||
T Consensus 119 nr~~~~~~~~~~~~~~rVLdlf~~tG~--~sl~aa~~----GA~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~ 191 (309)
T d2igta1 119 HWEWLKNAVETADRPLKVLNLFGYTGV--ASLVAAAA----GAEVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDA 191 (309)
T ss_dssp HHHHHHHHHHHSSSCCEEEEETCTTCH--HHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCH
T ss_pred HHHHHHHHHhhccCCCeEEEecCCCcH--HHHHHHhC----CCeEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCH
Confidence 344444444 34578999999999996 77766532 568999999999999999999988 875 99999999
Q ss_pred HHHhcCC----CCccEEEEeC
Q 027409 105 EEVMGEL----KGVDFLVVDC 121 (223)
Q Consensus 105 ~evL~~L----~~fDfVFIDa 121 (223)
.+.|.++ ..||+|++|-
T Consensus 192 ~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECC
T ss_pred HHhHHHHhhcCCCCCEEEECC
Confidence 9999765 3799999994
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=3.3e-09 Score=91.33 Aligned_cols=110 Identities=6% Similarity=0.025 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc
Q 027409 29 VAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ 103 (223)
Q Consensus 29 ~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd 103 (223)
+-+-+..++... ...+|||||||.|. .++.+|.. .+++||+|+++++.++.|++..++. |+. +++...|
T Consensus 37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~--~a~~~a~~---~g~~v~gi~ls~~q~~~a~~~~~~~-~l~~~~~~~~~d 110 (280)
T d2fk8a1 37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGT--TMRRAVER---FDVNVIGLTLSKNQHARCEQVLASI-DTNRSRQVLLQG 110 (280)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEESCTTSH--HHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHTS-CCSSCEEEEESC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchH--HHHHHHHh---CceeEEEecchHHHHHHHHHHHHhh-ccccchhhhhhh
Confidence 444456666544 45699999999996 66666532 3679999999999999999999999 988 8999888
Q ss_pred hHHHhcCCCCccEEEEeCC-----CcccHHHHHHh-ccCCCceEEEEeCC
Q 027409 104 AEEVMGELKGVDFLVVDCT-----SKDFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 104 A~evL~~L~~fDfVFIDa~-----K~~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
..+. + ++||.|+.=.. ..+|..||+.+ +.|+|||.++..-+
T Consensus 111 ~~~~-~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 111 WEDF-A--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp GGGC-C--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhh-c--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 7653 2 47999875432 35678999866 67899999988543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.6e-09 Score=89.39 Aligned_cols=115 Identities=7% Similarity=-0.132 Sum_probs=89.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-----------
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV----------- 92 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a----------- 92 (223)
-..|.--+++..++......+||++|||.|+ .+++||. .|.+||.||.+++.++.|++.....
T Consensus 28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~--~a~~LA~----~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~ 101 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAV--EMKWFAD----RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG 101 (229)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCTTCT--HHHHHHH----TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcH--HHHHHHh----CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence 4567777788888888888999999999999 8888874 2679999999999999999876532
Q ss_pred ------cCceEEEEecchHHHhcCC-CCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEE
Q 027409 93 ------VGWVSEVIVRQAEEVMGEL-KGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 93 ------~G~~I~li~GdA~evL~~L-~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
.+..++++.+|+.+.-+.. ..||+|+.=+ ..++...|+..+ +.++|||.++.
T Consensus 102 ~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 102 TKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp CEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEE
Confidence 0223999999999876655 4799987443 345667888755 67899996543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=1.7e-09 Score=94.64 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCc--e-EEEEecchHHHhcCCC-
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGW--V-SEVIVRQAEEVMGELK- 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~--~-I~li~GdA~evL~~L~- 112 (223)
.--+|++||-||.|.|. .+-+++ ..++.-+|+.+|+||+.++.|+++|... .++ . ++++.+||.+.|.+.+
T Consensus 86 ~~~~pk~VLiiGgG~G~--~~r~~l--~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 161 (295)
T d1inla_ 86 LHPNPKKVLIIGGGDGG--TLREVL--KHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKN 161 (295)
T ss_dssp HSSSCCEEEEEECTTCH--HHHHHT--TSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSS
T ss_pred hCCCCceEEEecCCchH--HHHHHH--hcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCC
Confidence 34689999999999885 222322 2234568999999999999999998753 122 2 9999999999999874
Q ss_pred CccEEEEeCCCc-------cc-HHHHHHh-ccCCCceEEEEeC
Q 027409 113 GVDFLVVDCTSK-------DF-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 113 ~fDfVFIDa~K~-------~Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
.||+|++|+--. .| .++|+.+ +.|++||++++.-
T Consensus 162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 799999997321 22 6788877 4679999999863
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.95 E-value=1.6e-09 Score=89.62 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=75.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc-C-C-CCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG-E-L-KGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~-~-L-~~fDfV 117 (223)
.-.+|||||||+|+ .+..||... ++|+|+.||++|++++.|++..++. +. ++++.+|+...-. . . ..+|+|
T Consensus 56 pg~~VLDlGcG~G~--~~~~la~~v--~~g~V~gvDis~~~i~~a~~~a~~~-~n-i~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 56 GDERVLYLGAASGT--TVSHLADIV--DEGIIYAVEYSAKPFEKLLELVRER-NN-IIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp SSCEEEEETCTTSH--HHHHHHHHT--TTSEEEEECCCHHHHHHHHHHHHHC-SS-EEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCEEEEeCCcCCH--HHHHHHHhc--cCCeEEEEeCCHHHHHHHHHHhhcc-CC-ceEEEeeccCccccccccceEEEE
Confidence 34799999999998 666777543 3579999999999999999998876 53 8999999976322 2 2 479999
Q ss_pred EEeC-CCcccHHHHHHh-ccCCCceEEEE
Q 027409 118 VVDC-TSKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa-~K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|.|- -..+...++..+ +.|+|||.++.
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEE
Confidence 9995 355666666644 67788887754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.7e-09 Score=93.49 Aligned_cols=91 Identities=10% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEE
Q 027409 24 IKESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li 100 (223)
|-.|||-.+....+... ++.+|||+|||+|. -++.+|.. .++.+++.+|++++.++.|++|.++. |++ |+++
T Consensus 89 IPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~--I~i~la~~--~p~~~v~avDis~~Al~~A~~Na~~~-~~~~v~~~ 163 (274)
T d2b3ta1 89 IPRPDTECLVEQALARLPEQPCRILDLGTGTGA--IALALASE--RPDCEIIAVDRMPDAVSLAQRNAQHL-AIKNIHIL 163 (274)
T ss_dssp CCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSH--HHHHHHHH--CTTSEEEEECSSHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ccccchhhhhhhHhhhhcccccceeeeehhhhH--HHHHHHhh--CCcceeeeccchhHHHhHHHHHHHHh-Ccccceee
Confidence 45688887877665544 55689999999998 45555533 35789999999999999999999999 998 9999
Q ss_pred ecchHHHhcCCCCccEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFID 120 (223)
.||-.+-++. ..||+|+-.
T Consensus 164 ~~d~~~~~~~-~~fDlIvsN 182 (274)
T d2b3ta1 164 QSDWFSALAG-QQFAMIVSN 182 (274)
T ss_dssp CCSTTGGGTT-CCEEEEEEC
T ss_pred ecccccccCC-CceeEEEec
Confidence 9999887664 379999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.92 E-value=2.4e-09 Score=89.71 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=77.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++||+||||+|. .++.++.. .++.+++.+|. ++.++.|++++++. |+. |+++.||..+..+ .+||+
T Consensus 78 ~~~~~~VLDvGcG~G~--~~~~la~~--~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~rv~~~~~D~~~~~~--~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGG--FAAAIARR--APHVSATVLEM-AGTVDTARSYLKDE-GLSDRVDVVEGDFFEPLP--RKADA 149 (253)
T ss_dssp CTTCSEEEEETCTTSH--HHHHHHHH--CTTCEEEEEEC-TTHHHHHHHHHHHT-TCTTTEEEEECCTTSCCS--SCEEE
T ss_pred CccCCEEEEeCCCCCH--HHHHHHHh--cceeEEEEccC-HHHHHHHHHHHHHh-hcccchhhccccchhhcc--cchhh
Confidence 3577999999999998 77777754 35678999997 78999999999999 887 9999999876433 47999
Q ss_pred EEEeCCCccc-----HHHHHHh-ccCCCceE-EEEeCCC
Q 027409 117 LVVDCTSKDF-----ARVLRFA-RFSNKGAV-LAFKNAF 148 (223)
Q Consensus 117 VFIDa~K~~Y-----~~~f~~~-~~l~~Ggv-IV~DNvl 148 (223)
||+=.--.++ .++|..+ +.|+|||. +|.|...
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9986544333 3556544 66799995 5555543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.91 E-value=2.4e-09 Score=93.18 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=78.6
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh-cCce---EEEEecchHHHhcCC-C-C
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV-VGWV---SEVIVRQAEEVMGEL-K-G 113 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a-~G~~---I~li~GdA~evL~~L-~-~ 113 (223)
.+|++||-||-|.|. .+-.++ ..++-.+|+.+|+|++.++.|+++|... -... ++++.+||.+.+.+. + .
T Consensus 79 ~~pk~VLiiGgG~G~--~~r~~l--~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGG--VLREVA--RHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSH--HHHHHT--TCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCcceEEecCCchH--HHHHHH--hcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 589999999999885 222221 2234468999999999999999998642 0122 999999999999876 3 7
Q ss_pred ccEEEEeCCCcc------c-HHHHHHh-ccCCCceEEEEeC
Q 027409 114 VDFLVVDCTSKD------F-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~------Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
||+|++|+--.. | .++|+.+ +.|++||++|..-
T Consensus 155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 999999985322 2 6678877 4679999999874
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=2.7e-09 Score=92.08 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=80.9
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC---ce-EEEEecchHHHhcCC
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG---WV-SEVIVRQAEEVMGEL 111 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G---~~-I~li~GdA~evL~~L 111 (223)
|....+|++||-||-|.|. .+-++. ..++..+|+.+|+||+.++.|+++|....+ .. ++++.+||.+.|.+-
T Consensus 70 l~~~~~p~~vLiiGgG~G~--~~~~~l--~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~ 145 (274)
T d1iy9a_ 70 LFTHPNPEHVLVVGGGDGG--VIREIL--KHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS 145 (274)
T ss_dssp HHHSSSCCEEEEESCTTCH--HHHHHT--TCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC
T ss_pred hhccCCcceEEecCCCCcH--HHHHHH--hcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc
Confidence 3344688999999999885 222322 123457999999999999999999864212 22 999999999999876
Q ss_pred -CCccEEEEeCCCcc-------cHHHHHHhc-cCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSKD-------FARVLRFAR-FSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~~-------Y~~~f~~~~-~l~~GgvIV~DN 146 (223)
+.||+|++|+--.. -.+||+.++ .|++||+++...
T Consensus 146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 47999999974322 267888774 679999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=1.6e-09 Score=91.13 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=76.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHH--hcC-CCCccEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEV--MGE-LKGVDFL 117 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ev--L~~-L~~fDfV 117 (223)
.-.+||++|||+|+ .+..||... .++|+|+++|+++++++.|+++.++. +. +..+.+|+... .+. ...+|+|
T Consensus 73 pG~~VLDlGaGsG~--~t~~la~~V-G~~G~V~aVD~s~~~l~~a~~~a~~~-~~-~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 73 PGKSVLYLGIASGT--TASHVSDIV-GWEGKIFGIEFSPRVLRELVPIVEER-RN-IVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp TTCEEEEETTTSTT--HHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHSSC-TT-EEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCEEEEeccCCCH--HHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHHhc-CC-ceEEEEECCCcccccccccceEEE
Confidence 34699999999999 777888654 45799999999999999999988776 54 67777888542 222 2579999
Q ss_pred EEeCC-CcccHHHHHHh-ccCCCceEEEE
Q 027409 118 VVDCT-SKDFARVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~-K~~Y~~~f~~~-~~l~~GgvIV~ 144 (223)
|.|-. .++...++..+ +.|+|||.++.
T Consensus 148 ~~d~~~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 148 FEDVAQPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEccccchHHHHHHHHHHhcccCCeEEE
Confidence 99975 45556677655 57799998765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.5e-09 Score=92.88 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=77.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCC-C
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGEL-K 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L-~ 112 (223)
...+||+||-||-|.|. .+-++. ..++.-+|+.+|+||+..+.|+++|... +... ++++.+||.+.|.+- +
T Consensus 75 ~~~~pk~vLiiGgG~G~--~~~~~l--~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 150 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGG--VLREVV--KHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQD 150 (285)
T ss_dssp TSSSCCEEEEEECTTSH--HHHHHT--TCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSS
T ss_pred hCcCcCeEEEeCCCchH--HHHHHH--HcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCC
Confidence 34589999999999885 222322 2234569999999999999999998642 1122 999999999999876 4
Q ss_pred CccEEEEeCCCc------cc-HHHHHHh-ccCCCceEEEEe
Q 027409 113 GVDFLVVDCTSK------DF-ARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 113 ~fDfVFIDa~K~------~Y-~~~f~~~-~~l~~GgvIV~D 145 (223)
.||+|++|+--. .| .++|+.+ +.|++||++|+.
T Consensus 151 ~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 151 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 899999997432 22 4677777 467999999986
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=8.5e-09 Score=89.47 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHh---cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 26 ESGVAELLSAMAAG---WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~~~---~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+..+-+-+..++.. ..-.+|||||||.|. .++++|.. .++++|+|+++++.++.|++..++. |+. +++.
T Consensus 43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~--~~~~~a~~---~g~~v~git~s~~q~~~a~~~~~~~-~l~~~v~~~ 116 (291)
T d1kpia_ 43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGS--TMRHAVAE---YDVNVIGLTLSENQYAHDKAMFDEV-DSPRRKEVR 116 (291)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHHS-CCSSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEecCcchH--HHHHHHHh---cCcceeeccchHHHHHHHHHHHHhh-ccchhhhhh
Confidence 44445555555544 456789999999995 66677643 3689999999999999999999999 998 9999
Q ss_pred ecchHHHhcCCCCccEEEEeCCC------------cccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCTS------------KDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~K------------~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
..|..+. + ++||-|+--..- .+|..||+.+ +.|+|||.++..-+.
T Consensus 117 ~~d~~~~-~--~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 117 IQGWEEF-D--EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp ECCGGGC-C--CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred hhccccc-c--cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 9997431 1 479988844332 4589999877 678999999987654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.87 E-value=3.1e-09 Score=89.70 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhc
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMG 109 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~ 109 (223)
-+||..+ ...+.++|||+|||+|. .|..|+.-. ..+|+.+|+++++++.||+.++.. +. ++++.+|+.+.-.
T Consensus 83 ~~fl~~l-~~~~~~~vLD~GcG~G~--~t~~ll~~~---~~~v~~vD~s~~~l~~a~~~~~~~-~~-~~~~~~d~~~~~~ 154 (254)
T d1xtpa_ 83 RNFIASL-PGHGTSRALDCGAGIGR--ITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGM-PV-GKFILASMETATL 154 (254)
T ss_dssp HHHHHTS-TTCCCSEEEEETCTTTH--HHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTS-SE-EEEEESCGGGCCC
T ss_pred HHHHhhC-CCCCCCeEEEecccCCh--hhHHHHhhc---CceEEEEcCCHHHHHhhhcccccc-cc-ceeEEcccccccc
Confidence 4455443 33577899999999997 666665321 348999999999999999987654 33 8999999977432
Q ss_pred CCCCccEEEEeCCCccc-----HHHHHHh-ccCCCceEEEE-eCCCC
Q 027409 110 ELKGVDFLVVDCTSKDF-----ARVLRFA-RFSNKGAVLAF-KNAFQ 149 (223)
Q Consensus 110 ~L~~fDfVFIDa~K~~Y-----~~~f~~~-~~l~~GgvIV~-DNvl~ 149 (223)
.-+.||+|++-.--.+. .++|..+ +.|+|||.|+. ||+..
T Consensus 155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 32479999987654443 3566654 56777776654 55543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=4e-09 Score=89.43 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=76.0
Q ss_pred HHHHHHHHHHh--cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH
Q 027409 29 VAELLSAMAAG--WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE 106 (223)
Q Consensus 29 ~g~fL~~L~~~--~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e 106 (223)
...+...+... .++.+|||||||+|+ .+.+|+.. .++.+++.||+++++++.|++...+ ++++.||+.+
T Consensus 70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~--~~~~l~~~--~~~~~~~giD~s~~~~~~a~~~~~~-----~~~~~~d~~~ 140 (268)
T d1p91a_ 70 RDAIVAQLRERLDDKATAVLDIGCGEGY--YTHAFADA--LPEITTFGLDVSKVAIKAAAKRYPQ-----VTFCVASSHR 140 (268)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTST--THHHHHHT--CTTSEEEEEESCHHHHHHHHHHCTT-----SEEEECCTTS
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCcH--HHHHHHHH--CCCCEEEEecchHhhhhhhhccccc-----ccceeeehhh
Confidence 34444444443 478899999999998 67677654 3468999999999999999875432 6899999976
Q ss_pred HhcC-CCCccEEEEeCCCcccHHHHHHhccCCCceEEEEe
Q 027409 107 VMGE-LKGVDFLVVDCTSKDFARVLRFARFSNKGAVLAFK 145 (223)
Q Consensus 107 vL~~-L~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvIV~D 145 (223)
|+- -+.||+|+.--....+.+ ..+.|+|||.+++-
T Consensus 141 -l~~~~~sfD~v~~~~~~~~~~e---~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 141 -LPFSDTSMDAIIRIYAPCKAEE---LARVVKPGGWVITA 176 (268)
T ss_dssp -CSBCTTCEEEEEEESCCCCHHH---HHHHEEEEEEEEEE
T ss_pred -ccCCCCCEEEEeecCCHHHHHH---HHHHhCCCcEEEEE
Confidence 332 247999997666665443 34667899998874
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.86 E-value=3.3e-09 Score=93.50 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=77.4
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCC-
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGEL- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L- 111 (223)
..--+||+||-||.|.|. .+-+++ ..++-.+|+.+|+|++.++.|+++|... +... ++++.+||.+.|.+-
T Consensus 102 ~~~~~pk~VLIiGgG~G~--~~rell--k~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~ 177 (312)
T d2b2ca1 102 FAHPDPKRVLIIGGGDGG--ILREVL--KHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK 177 (312)
T ss_dssp HHSSSCCEEEEESCTTSH--HHHHHT--TCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT
T ss_pred hcCCCCCeEEEeCCCchH--HHHHHH--HcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCC
Confidence 345689999999999885 221221 1234479999999999999999998653 1222 999999999999875
Q ss_pred CCccEEEEeCCCcc------c-HHHHHHh-ccCCCceEEEEeC
Q 027409 112 KGVDFLVVDCTSKD------F-ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 112 ~~fDfVFIDa~K~~------Y-~~~f~~~-~~l~~GgvIV~DN 146 (223)
..||+|++|+--.. | .+||+.+ +.|+|||++|..-
T Consensus 178 ~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 178 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 47999999974332 2 5677777 4679999999863
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.84 E-value=3.5e-09 Score=89.48 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=79.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+.++||+||||.|. .+..++.+ .++.+++.+|+ |+.++.|++++++. |+. |++..||..+-++ .+||+|
T Consensus 80 ~~~~~vlDvG~G~G~--~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~~~~~~-~~~~ri~~~~~d~~~~~p--~~~D~v 151 (256)
T d1qzza2 80 SAVRHVLDVGGGNGG--MLAAIALR--APHLRGTLVEL-AGPAERARRRFADA-GLADRVTVAEGDFFKPLP--VTADVV 151 (256)
T ss_dssp TTCCEEEEETCTTSH--HHHHHHHH--CTTCEEEEEEC-HHHHHHHHHHHHHT-TCTTTEEEEECCTTSCCS--CCEEEE
T ss_pred ccCCEEEEECCCCCH--HHHHHHHh--hcCcEEEEecC-hHHHHHHHHHHhhc-CCcceeeeeeeecccccc--ccchhh
Confidence 577999999999998 77777765 35789999998 88999999999999 887 9999999876433 469998
Q ss_pred EEeCC-----CcccHHHHHHh-ccCCCce-EEEEeCCCC
Q 027409 118 VVDCT-----SKDFARVLRFA-RFSNKGA-VLAFKNAFQ 149 (223)
Q Consensus 118 FIDa~-----K~~Y~~~f~~~-~~l~~Gg-vIV~DNvl~ 149 (223)
++=.- .++-..+|+.+ +.++||| ++|.|.++.
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~ 190 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 190 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccC
Confidence 87533 33445677755 5678888 677787654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=1.7e-08 Score=82.75 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.-+|..+..+..++... .-++||++|||+|. .++.++. +. ..+|+.+|+|++.++.|++|+++. +..++++
T Consensus 26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~--l~i~a~~--~g-~~~v~~vdi~~~~~~~a~~N~~~~-~~~~~~~ 99 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGV--LSYGALL--LG-AKEVICVEVDKEAVDVLIENLGEF-KGKFKVF 99 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCH--HHHHHHH--TT-CSEEEEEESCHHHHHHHHHHTGGG-TTSEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchH--HHHHHHH--cC-CCEEEEEcCcHHHHHHHHHHHHHc-CCCceEE
Confidence 35666788777777765 34899999999996 5655432 22 258999999999999999999998 8889999
Q ss_pred ecchHHHhcCCCCccEEEEeCC
Q 027409 101 VRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFIDa~ 122 (223)
.+|+.+. -++||+||.|.-
T Consensus 100 ~~d~~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 100 IGDVSEF---NSRVDIVIMNPP 118 (201)
T ss_dssp ESCGGGC---CCCCSEEEECCC
T ss_pred ECchhhh---CCcCcEEEEcCc
Confidence 9998763 247999999963
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=6.1e-09 Score=90.26 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+-++|||||||+|. .++++|.+. ..+|+.||.++. ...|+++.++. |+. |+++.||+.+.-...+.||+
T Consensus 31 ~~~~~~VLDiGcG~G~--ls~~aa~~G---a~~V~avd~s~~-~~~a~~~~~~n-~~~~~v~~~~~~~~~~~~~~~~~D~ 103 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGI--LCMFAAKAG---ARKVIGIECSSI-SDYAVKIVKAN-KLDHVVTIIKGKVEEVELPVEKVDI 103 (316)
T ss_dssp HHTTCEEEEETCTTSH--HHHHHHHTT---CSEEEEEECSTT-HHHHHHHHHHT-TCTTTEEEEESCTTTCCCSSSCEEE
T ss_pred cCCcCEEEEEecCCcH--HHHHHHHhC---CCEEEEEcCcHH-HhhhhhHHHHh-CCccccceEeccHHHcccccceeEE
Confidence 4467899999999997 777766531 147999999865 68888998888 887 99999999884333358999
Q ss_pred EEEeCC------CcccHHHHHHh-ccCCCceEEE
Q 027409 117 LVVDCT------SKDFARVLRFA-RFSNKGAVLA 143 (223)
Q Consensus 117 VFIDa~------K~~Y~~~f~~~-~~l~~GgvIV 143 (223)
|+.+.- .+.+..+++.+ +.|+|||.|+
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 987632 12345566665 5679999997
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.79 E-value=7.7e-09 Score=86.78 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=72.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVF 118 (223)
-.+||++|||+|+ ++..+|.. .++|+|+.+|++|++++.|++.-++. +. +..+.+|+....+-. ..+|++|
T Consensus 75 G~~VLDlGcGsG~--~~~~la~~--~~~g~V~aVDiS~~~i~~a~~~a~~~-~n-i~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 75 DSKILYLGASAGT--TPSHVADI--ADKGIVYAIEYAPRIMRELLDACAER-EN-IIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp TCEEEEESCCSSH--HHHHHHHH--TTTSEEEEEESCHHHHHHHHHHTTTC-TT-EEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCEEEEeCEEcCH--HHHHHHHh--CCCCEEEEEeCcHHHHHHHHHHHhhh-cc-cceEEEeeccCcccccccceeEEee
Confidence 4689999999999 67678764 34789999999999999998875444 32 778899998755422 3577787
Q ss_pred EeCC-CcccHHHHHHh-ccCCCceEEEE-eCC
Q 027409 119 VDCT-SKDFARVLRFA-RFSNKGAVLAF-KNA 147 (223)
Q Consensus 119 IDa~-K~~Y~~~f~~~-~~l~~GgvIV~-DNv 147 (223)
.|-. ..+...++..+ +.|+|||.++. +..
T Consensus 149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence 7754 55566667655 56788996554 444
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.77 E-value=1.9e-08 Score=81.11 Aligned_cols=109 Identities=9% Similarity=0.104 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCC-cEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchH
Q 027409 30 AELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTC-ARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAE 105 (223)
Q Consensus 30 g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~ 105 (223)
..+.++|-.-..-.++|++-+|+|. .++-. . ..| ..+|.||.|++..+..++|++.. +.+ ..++..|+.
T Consensus 32 ealFn~l~~~~~~~~vLDlFaGsG~--~glEa---l-SRGA~~v~fVE~~~~a~~~ik~Ni~~l-~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 32 ETLFNWLMPYIHQSECLDGFAGSGS--LGFEA---L-SRQAKKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSL 104 (183)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCH--HHHHH---H-HTTCSEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHH
T ss_pred HHHHHHhhhhcccceEeecccCccc--eeeee---e-eecceeeEEeecccchhhhHhhHHhhh-ccccccccccccccc
Confidence 5677777665666799999999995 44421 1 223 38999999999999999999998 775 899999999
Q ss_pred HHhcCC---CCccEEEEeC--CCcccHHHHHHh---ccCCCceEEEEe
Q 027409 106 EVMGEL---KGVDFLVVDC--TSKDFARVLRFA---RFSNKGAVLAFK 145 (223)
Q Consensus 106 evL~~L---~~fDfVFIDa--~K~~Y~~~f~~~---~~l~~GgvIV~D 145 (223)
+.+... .+||+||+|- +...|.+.++.+ ..++++|+||+.
T Consensus 105 ~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp HHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 988754 2699999996 456678888866 245999999985
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=2.5e-08 Score=86.64 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=74.6
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCcc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fD 115 (223)
...+-++||+||||+|. .++++|.+. ..+|+.+|.++ +++.|+++.++. |+. |+++.||+.++--.-+.||
T Consensus 35 ~~~~~~~VLDlGcGtG~--ls~~aa~~G---a~~V~avd~s~-~~~~a~~~~~~~-~~~~~i~~i~~~~~~l~~~~~~~D 107 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGI--LSMFAAKHG---AKHVIGVDMSS-IIEMAKELVELN-GFSDKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHHTTCEEEEETCTTSH--HHHHHHHTC---CSEEEEEESST-HHHHHHHHHHHT-TCTTTEEEEESCTTTSCCSSSCEE
T ss_pred ccCCcCEEEEeCCCCCH--HHHHHHHhC---CCEEEEEeCCH-HHHHHHHHHHHh-CccccceEEEeehhhccCccccee
Confidence 34577999999999998 777766531 24899999985 789999999998 887 9999999887421124799
Q ss_pred EEEEeCCC------cccHHHHHHh-ccCCCceEEEEeC
Q 027409 116 FLVVDCTS------KDFARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K------~~Y~~~f~~~-~~l~~GgvIV~DN 146 (223)
+|+...-- .....++... +.|+|||+|+-+-
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~ 145 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK 145 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred EEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence 99875321 2233445555 5779999997443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=2.6e-08 Score=86.14 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHH---hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEE
Q 027409 26 ESGVAELLSAMAA---GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVI 100 (223)
Q Consensus 26 ~p~~g~fL~~L~~---~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li 100 (223)
+..+-+.+..++. +..-.+|||||||.|- .++++|.. .+++||+|.++++.++.|++..+++ |+. +++.
T Consensus 44 ~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~--~a~~~a~~---~g~~v~git~s~~Q~~~a~~~~~~~-g~~~~v~~~ 117 (285)
T d1kpga_ 44 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGA--TMMRAVEK---YDVNVVGLTLSKNQANHVQQLVANS-ENLRSKRVL 117 (285)
T ss_dssp HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSH--HHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHTC-CCCSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEecCcchH--HHHHHHhc---CCcceEEEeccHHHHHHHHHHHHhh-hhhhhhHHH
Confidence 3445555555554 4455789999999995 77777653 3789999999999999999999999 988 9999
Q ss_pred ecchHHHhcCCCCccEEE-EeC----CCcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 101 VRQAEEVMGELKGVDFLV-VDC----TSKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVF-IDa----~K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.+|..+. + .+||-|+ |-+ ...+|..||+.+ +.|+|||.++.-.+.
T Consensus 118 ~~d~~~~-~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 118 LAGWEQF-D--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ESCGGGC-C--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred Hhhhhcc-c--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 9998653 3 4788554 332 235678999866 678999999876553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.9e-08 Score=86.50 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=71.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+-++||+||||+|. .++++|.+. -.+|+.+|.++.+ ..|++..++. |.. |+++.||+.+.-.....||+
T Consensus 33 ~~~~~~VLDiGcG~G~--lsl~aa~~G---a~~V~aid~s~~~-~~a~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI--LSMFAAKAG---AKKVLGVDQSEIL-YQAMDIIRLN-KLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp GTTTCEEEEETCTTSH--HHHHHHHTT---CSEEEEEESSTHH-HHHHHHHHHT-TCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred cCCcCEEEEECCCCCH--HHHHHHHcC---CCEEEEEeCHHHH-HHHHHHHHHh-CCCccceEEEeeHHHhcCccccceE
Confidence 4567899999999998 787776542 1489999999875 4677777777 776 99999999885333358999
Q ss_pred EEEeCC-----CcccH-HHHHHh-ccCCCceEEEE
Q 027409 117 LVVDCT-----SKDFA-RVLRFA-RFSNKGAVLAF 144 (223)
Q Consensus 117 VFIDa~-----K~~Y~-~~f~~~-~~l~~GgvIV~ 144 (223)
|+.+.- .+... .++.+. +.|+|||.++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 987532 22333 334444 46799999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=3.6e-07 Score=78.56 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=74.1
Q ss_pred CCcHHHHHHHHHHHH---hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EE
Q 027409 24 IKESGVAELLSAMAA---GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~---~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~ 98 (223)
|-.|||..++..... ..+.++++++|||.|. .++.+|. . ++.+|+.+|++++.++.|++|.++. |+. +.
T Consensus 90 IPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~--i~~~la~--~-~~~~v~a~Dis~~Al~~A~~Na~~~-~~~~~~~ 163 (271)
T d1nv8a_ 90 VPRPETEELVELALELIRKYGIKTVADIGTGSGA--IGVSVAK--F-SDAIVFATDVSSKAVEIARKNAERH-GVSDRFF 163 (271)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSH--HHHHHHH--H-SSCEEEEEESCHHHHHHHHHHHHHT-TCTTSEE
T ss_pred CchhhhhhhhhhhhhhhccccccEEEEeeeeeeh--hhhhhhh--c-ccceeeechhhhhHHHHHHHHHHHc-CCCceeE
Confidence 567888777665554 4578899999999997 4444443 2 4789999999999999999999998 887 89
Q ss_pred EEecchHHHhcCC-CCccEEEEe
Q 027409 99 VIVRQAEEVMGEL-KGVDFLVVD 120 (223)
Q Consensus 99 li~GdA~evL~~L-~~fDfVFID 120 (223)
+..+|-.+.++.. +.||+|+-.
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEEC
T ss_pred EeecccccccccccCcccEEEEc
Confidence 9999999988754 589999875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=2.4e-08 Score=79.92 Aligned_cols=98 Identities=24% Similarity=0.145 Sum_probs=68.7
Q ss_pred HHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCC
Q 027409 33 LSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELK 112 (223)
Q Consensus 33 L~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~ 112 (223)
+..+.....-.+|||||||+|. .+..++ +++.||.++++++.|++. . ++++.+|+.+.-..-+
T Consensus 28 ~~~~~~~~~~~~vLDiGcG~G~--~~~~~~--------~~~giD~s~~~~~~a~~~---~----~~~~~~d~~~l~~~~~ 90 (208)
T d1vlma_ 28 LQAVKCLLPEGRGVEIGVGTGR--FAVPLK--------IKIGVEPSERMAEIARKR---G----VFVLKGTAENLPLKDE 90 (208)
T ss_dssp HHHHHHHCCSSCEEEETCTTST--THHHHT--------CCEEEESCHHHHHHHHHT---T----CEEEECBTTBCCSCTT
T ss_pred HHHHHhhCCCCeEEEECCCCcc--cccccc--------eEEEEeCChhhccccccc---c----cccccccccccccccc
Confidence 4445555555589999999997 444431 368999999999998862 3 6899999976421224
Q ss_pred CccEEEEeCCCc---ccHHHHHHh-ccCCCceEEEEeCC
Q 027409 113 GVDFLVVDCTSK---DFARVLRFA-RFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa~K~---~Y~~~f~~~-~~l~~GgvIV~DNv 147 (223)
.||+|+.=..=+ +-..+|..+ +.|+|||.+++...
T Consensus 91 ~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 91 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccccccchhhhhhcCCCCceEEEEec
Confidence 799999764332 234566544 67799998888654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=3.3e-07 Score=74.84 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=78.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH---HhcCC--CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE---VMGEL--KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e---vL~~L--~~ 113 (223)
...-..+|+++||+|- -|..++.+. ++|+|+++|+|+++++.|++.++++ +..+.++.++..+ .+..+ ++
T Consensus 21 ~~~~~~~lD~t~G~Gg--hs~~il~~~--~~~~vi~~D~d~~~l~~a~~~l~~~-~~r~~~~~~~f~~~~~~~~~~~~~~ 95 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGG--HSRAILEHC--PGCRIIGIDVDSEVLRIAEEKLKEF-SDRVSLFKVSYREADFLLKTLGIEK 95 (192)
T ss_dssp CCTTCEEEETTCTTSH--HHHHHHHHC--TTCEEEEEESCHHHHHHHHHHTGGG-TTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCCCEEEEecCCCcH--HHHHHHhcC--CCCeEEEeechHHHHHHHHHhhccc-cccccchhHHHhhHHHHHHHcCCCC
Confidence 4555699999999995 565776554 4699999999999999999999998 7778999987654 45554 58
Q ss_pred ccEEEEeCCCccc------------HHHHHHh-ccCCCceEEEEeC
Q 027409 114 VDFLVVDCTSKDF------------ARVLRFA-RFSNKGAVLAFKN 146 (223)
Q Consensus 114 fDfVFIDa~K~~Y------------~~~f~~~-~~l~~GgvIV~DN 146 (223)
||.|++|..-+.| .+.++.. ..+++||.+++=+
T Consensus 96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 9999999754333 2344433 5679999988633
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.8e-07 Score=80.37 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=73.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce---EEEEecchHHHh
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV---SEVIVRQAEEVM 108 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~---I~li~GdA~evL 108 (223)
.+..-..||+||||.|. .++.+|.. .+.++++.||+++++++.|+++.+++ +|.. |+|+.||+.+.-
T Consensus 148 ~l~~~~~vlD~GcG~G~--~~~~~a~~--~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQ--VVLQVAAA--TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 223 (328)
T ss_dssp CCCTTCEEEEETCTTSH--HHHHHHHH--CCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred CCCCCCEEEEcCCCCCH--HHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence 34556789999999997 66666532 33568999999999999999887653 1444 999999997631
Q ss_pred -c-CCCCccEEEEeCCC--cccHHHHH-HhccCCCceEEEEeCCC
Q 027409 109 -G-ELKGVDFLVVDCTS--KDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 109 -~-~L~~fDfVFIDa~K--~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
. .+...|+||+-.-- .+....+. ..+.++|||.||+-.-+
T Consensus 224 ~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 224 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp HHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 1 12247899985421 12223333 44678999999986544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=6.7e-08 Score=81.06 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=69.4
Q ss_pred eEEEEccCcchHHHHHHHHHhc----CCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHHHhc----CC-
Q 027409 44 LIVEAWTHGGPITTSIGLAIAA----RHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEEVMG----EL- 111 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~----~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~evL~----~L- 111 (223)
+|||||||+|. .+.+++.+. .....+++.||+++.+++.|++.+++...+. +++...++.+... ..
T Consensus 43 ~VLDiGcG~G~--~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 43 KILSIGGGAGE--IDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEETCTTSH--HHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred eEEEEcCCCCH--HHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 79999999997 566665442 1224578999999999999999998651333 6667777765422 22
Q ss_pred -CCccEEEEeCC---CcccHHHHHHh-ccCCCceEEEEe
Q 027409 112 -KGVDFLVVDCT---SKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 112 -~~fDfVFIDa~---K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+.||+|+.=.. -.+...++..+ +.|+|||+++.-
T Consensus 121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 47999988432 22345677654 677999977653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.6e-07 Score=77.16 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=77.2
Q ss_pred ccccChhHHHHHHHHhhcccC----------CCCc-HHH-HHHHHHHHHh--------cCCCeEEEEccCcchHHHHHHH
Q 027409 2 KLVWSPDAASKAYIDTVKSCE----------NIKE-SGV-AELLSAMAAG--------WNAKLIVEAWTHGGPITTSIGL 61 (223)
Q Consensus 2 ~~~w~~~~a~~ayl~~l~~~~----------~ii~-p~~-g~fL~~L~~~--------~~ak~ILEIGT~~Gys~Stl~l 61 (223)
.+.|+...|..++-.+|.... ..|+ |++ ..++.++..+ ....+|||||||+|.+ ++.|
T Consensus 2 ~idf~~~~a~~~l~~~ll~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I--~~~l 79 (250)
T d2h00a1 2 SLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCI--YPLL 79 (250)
T ss_dssp CSCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTH--HHHH
T ss_pred eeecCChHHHHHHHHHHHHHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHH--HHHH
Confidence 356777777777766555422 1333 333 3333444332 2345999999999984 4445
Q ss_pred HHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhc-CC-----CCccEEEEe
Q 027409 62 AIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMG-EL-----KGVDFLVVD 120 (223)
Q Consensus 62 a~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~-~L-----~~fDfVFID 120 (223)
|.. -++.+++.+|++++.++.|++|.++. +++ +.++.++..+.+. .+ +.||||+.-
T Consensus 80 ~~~--~~~~~~~~~Di~~~al~~A~~N~~~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 80 GAT--LNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCN 143 (250)
T ss_dssp HHH--HHCCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred HHh--CCCccccceecCHHHHHHHHHHHHHh-CCCcceeeeeeccHHhhhhhhhhcccCceeEEEec
Confidence 432 24689999999999999999999999 888 9998887655432 22 269999854
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.43 E-value=5.2e-07 Score=74.13 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHHHhc---CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEE
Q 027409 24 IKESGVAELLSAMAAGW---NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVI 100 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~---~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li 100 (223)
.-+++.+..+-..+... .-++||++|||+|. .+++++. .. ..+|+.+|+|++.++.|++|.+.. +++
T Consensus 28 ~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~--l~i~a~~--~g-a~~V~~vDid~~a~~~ar~N~~~~-----~~~ 97 (197)
T d1ne2a_ 28 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGI--LACGSYL--LG-AESVTAFDIDPDAIETAKRNCGGV-----NFM 97 (197)
T ss_dssp CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCH--HHHHHHH--TT-BSEEEEEESCHHHHHHHHHHCTTS-----EEE
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcH--HHHHHHH--cC-CCcccccccCHHHHHHHHHccccc-----cEE
Confidence 55677777666555554 57899999999997 6666543 22 247999999999999999997654 899
Q ss_pred ecchHHHhcCCCCccEEEEe
Q 027409 101 VRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 101 ~GdA~evL~~L~~fDfVFID 120 (223)
.+|+.+ ++ ++||.||.|
T Consensus 98 ~~D~~~-l~--~~fD~Vi~N 114 (197)
T d1ne2a_ 98 VADVSE-IS--GKYDTWIMN 114 (197)
T ss_dssp ECCGGG-CC--CCEEEEEEC
T ss_pred EEehhh-cC--CcceEEEeC
Confidence 999865 23 479999998
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=2.9e-06 Score=73.54 Aligned_cols=116 Identities=16% Similarity=0.036 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHH----hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EE
Q 027409 24 IKESGVAELLSAMAA----GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SE 98 (223)
Q Consensus 24 ii~p~~g~fL~~L~~----~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~ 98 (223)
++.+.+.+.|...+. ..+..+|||+-||+|. .|+.||. ...+|+.||.+++.++.|++|.+.. |+. ++
T Consensus 191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~--fsl~La~----~~~~V~gvE~~~~ai~~A~~na~~n-~i~n~~ 263 (358)
T d1uwva2 191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN--FTLPLAT----QAASVVGVEGVPALVEKGQQNARLN-GLQNVT 263 (358)
T ss_dssp CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTT--THHHHHT----TSSEEEEEESCHHHHHHHHHHHHHT-TCCSEE
T ss_pred ccchhhhhHHHHHHHHhhccCCCceEEEecccccc--cchhccc----cccEEEeccCcHHHHHHHHHhHHhc-ccccce
Confidence 667777776655443 3367789999999997 7777763 2579999999999999999999999 999 99
Q ss_pred EEecchHHHhcCC----CCccEEEEeCCCcccHHHHHHhccCCCceEE-EEeC
Q 027409 99 VIVRQAEEVMGEL----KGVDFLVVDCTSKDFARVLRFARFSNKGAVL-AFKN 146 (223)
Q Consensus 99 li~GdA~evL~~L----~~fDfVFIDa~K~~Y~~~f~~~~~l~~GgvI-V~DN 146 (223)
++.|++.+.+..+ ..||.|++|--...-.+.++.+..+++.-|| |+=|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCn 316 (358)
T d1uwva2 264 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCN 316 (358)
T ss_dssp EEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESC
T ss_pred eeecchhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence 9999999988765 3699999998766667777755433333344 4444
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=2.2e-06 Score=70.73 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=82.4
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCc
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~f 114 (223)
++....+++|++||||.|+. ++-+|.+ .|+.+++-+|.+.++....++..++. |+. |+++.+++.+.-.+ .+|
T Consensus 60 ~~~~~~~~~ilDiGsGaG~P--Gi~laI~--~p~~~~~Lves~~KK~~FL~~~~~~L-~L~nv~v~~~R~E~~~~~-~~f 133 (207)
T d1jsxa_ 60 VAPYLQGERFIDVGTGPGLP--GIPLSIV--RPEAHFTLLDSLGKRVRFLRQVQHEL-KLENIEPVQSRVEEFPSE-PPF 133 (207)
T ss_dssp HGGGCCSSEEEEETCTTTTT--HHHHHHH--CTTSEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEECCTTTSCCC-SCE
T ss_pred hhhhhcCCceeeeeccCCce--eeehhhh--cccceEEEEecchHHHHHHHHHHHHc-CCcceeeeccchhhhccc-ccc
Confidence 34556789999999999994 5555543 35789999999999999999999999 998 99999999875432 479
Q ss_pred cEEEEeCCCcccHHHHHHhccC-CCceEEEE
Q 027409 115 DFLVVDCTSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
|+|..=|- .....+++.+.++ ++||.+++
T Consensus 134 D~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 134 DGVISRAF-ASLNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp EEEECSCS-SSHHHHHHHHTTSEEEEEEEEE
T ss_pred ceehhhhh-cCHHHHHHHHHHhcCCCcEEEE
Confidence 99988774 5678888888665 88888764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.9e-07 Score=74.50 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=67.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCceE----------------------
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWVS---------------------- 97 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~I---------------------- 97 (223)
+.++|||||||+|. .++.++ . .++ +|+.+|.++.+++.|++++++. +..+
T Consensus 51 ~g~~vLDlGcG~G~--~~~~~~--~--~~~~~v~giD~S~~~i~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (257)
T d2a14a1 51 QGDTLIDIGSGPTI--YQVLAA--C--DSFQDITLSDFTDRNREELEKWLKKE-PGAYDWTPAVKFACELEGNSGRWEEK 123 (257)
T ss_dssp CEEEEEESSCTTCC--GGGTTG--G--GTEEEEEEEESCHHHHHHHHHHHHTC-TTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCEEEEECCCCCH--hHHHHh--c--cccCcEEEecCCHHHHHHHHHHHhhc-cccchhhhHHHHHHHhccccchHHHH
Confidence 45789999999995 444443 2 234 6999999999999999998865 4321
Q ss_pred ---------EEEecchH-H-HhcCC--CCccEEEEeCC-------CcccHHHHHHh-ccCCCceEEEEeCCCCC
Q 027409 98 ---------EVIVRQAE-E-VMGEL--KGVDFLVVDCT-------SKDFARVLRFA-RFSNKGAVLAFKNAFQR 150 (223)
Q Consensus 98 ---------~li~GdA~-e-vL~~L--~~fDfVFIDa~-------K~~Y~~~f~~~-~~l~~GgvIV~DNvl~~ 150 (223)
.....+.. + .+... +.||+|+.-.. .+.|..+++.+ +.|+|||.+|.......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred HHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 01111100 0 11111 36999987422 24667788755 67799999998776543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.18 E-value=1.2e-06 Score=73.55 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
+++.+.+-+--.+....-.+|||||+|.|. .|..|+.. +.+|+.||+|+..++..++.+... . .++++.|||
T Consensus 5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~--LT~~Ll~~----~~~v~avE~D~~l~~~l~~~~~~~-~-n~~i~~~D~ 76 (235)
T d1qama_ 5 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGH--FTLELVQR----CNFVTAIEIDHKLCKTTENKLVDH-D-NFQVLNKDI 76 (235)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSH--HHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTC-C-SEEEECCCG
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEECCCchH--HHHHHHhC----cCceEEEeeccchHHHHHHHhhcc-c-chhhhhhhh
Confidence 344444444444445578999999999998 77777643 468999999999999998876543 2 299999999
Q ss_pred HHH
Q 027409 105 EEV 107 (223)
Q Consensus 105 ~ev 107 (223)
++.
T Consensus 77 l~~ 79 (235)
T d1qama_ 77 LQF 79 (235)
T ss_dssp GGC
T ss_pred hhc
Confidence 985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.02 E-value=1.5e-05 Score=70.99 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=82.1
Q ss_pred HHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---------------e-EEE
Q 027409 36 MAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---------------V-SEV 99 (223)
Q Consensus 36 L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---------------~-I~l 99 (223)
+++..++++|||..+++|. -+|-.|.... ..+|+..|+|++..+.+++|++.- |+ . +++
T Consensus 40 ~~~~~~~~~vLD~~sasG~--rsiRya~E~~--~~~V~~nDis~~A~~~i~~N~~lN-~~~~~~~~~~~~~~~~~~~~~~ 114 (375)
T d2dula1 40 LLNILNPKIVLDALSATGI--RGIRFALETP--AEEVWLNDISEDAYELMKRNVMLN-FDGELRESKGRAILKGEKTIVI 114 (375)
T ss_dssp HHHHHCCSEEEESSCTTSH--HHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHHH-CCSCCEECSSEEEEESSSEEEE
T ss_pred HHHHhCCCEEEEcCCCccH--HHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHHhc-CccccccccccccccccceeEe
Confidence 4566799999999999997 8885544332 348999999999999999999865 43 2 788
Q ss_pred EecchHHHhcCC-CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 100 IVRQAEEVMGEL-KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 100 i~GdA~evL~~L-~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
...||...+.+. ..||+|.||. -+-=..|++ +++.++.||+|.+--
T Consensus 115 ~~~Da~~~~~~~~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 115 NHDDANRLMAERHRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp EESCHHHHHHHSTTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ehhhhhhhhHhhcCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 999999988765 4799999998 333366888 557778899887643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=6e-06 Score=70.94 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH
Q 027409 29 VAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV 107 (223)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev 107 (223)
...+...++....-.+||++.+|-|. -|+.||.. +.+.|+|+++|+++.+.+..++++++. |+. |++...|+...
T Consensus 82 sS~l~~~~L~~~~g~~vLD~cAapGg--Kt~~la~l-~~~~~~i~a~d~~~~R~~~l~~~l~r~-g~~~~~~~~~d~~~~ 157 (293)
T d2b9ea1 82 ASCLPAMLLDPPPGSHVIDACAAPGN--KTSHLAAL-LKNQGKIFAFDLDAKRLASMATLLARA-GVSCCELAEEDFLAV 157 (293)
T ss_dssp GGGHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHT-TCCSEEEEECCGGGS
T ss_pred cccccccccCCCccceEEecccchhh--HHHHHHHH-hcCCceEeeecCCHHHHHHHHHHHHhc-Cccceeeeehhhhhh
Confidence 33444444455566689999999886 66677643 456799999999999999999999999 999 99999999875
Q ss_pred hcCC---CCccEEEEeCC
Q 027409 108 MGEL---KGVDFLVVDCT 122 (223)
Q Consensus 108 L~~L---~~fDfVFIDa~ 122 (223)
-+.. ..||.|++|+-
T Consensus 158 ~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 158 SPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp CTTCGGGTTEEEEEECCC
T ss_pred cccccccceeeEEeecCc
Confidence 4443 47999999964
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.97 E-value=9.5e-06 Score=68.89 Aligned_cols=80 Identities=13% Similarity=0.004 Sum_probs=64.2
Q ss_pred HHHHhcC-----CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc---------e-EEE
Q 027409 35 AMAAGWN-----AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW---------V-SEV 99 (223)
Q Consensus 35 ~L~~~~~-----ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~---------~-I~l 99 (223)
.|+++.+ ..+||+..+|.|- -++-||.. +++||.||.+|..+...+.+++++ .. . +++
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~--Da~vlA~~----G~~V~~iEr~p~l~~ll~d~l~r~-~~~~~~~~~~~~ri~l 149 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGR--DAFVLASV----GCRVRMLERNPVVAALLDDGLARG-YADAEIGGWLQERLQL 149 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCH--HHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHH-HHCTTTHHHHHHHEEE
T ss_pred HHHHHhcCCCCCCCEEEECCCcccH--HHHHHHhC----CCEEEEEccCHHHHHHHHHHHHHH-HhCchhHHHHhhhhee
Confidence 4555543 2389999998886 66566532 689999999999999999998876 31 1 999
Q ss_pred EecchHHHhcCC-CCccEEEEeC
Q 027409 100 IVRQAEEVMGEL-KGVDFLVVDC 121 (223)
Q Consensus 100 i~GdA~evL~~L-~~fDfVFIDa 121 (223)
+.||+.+.|.++ +.||.|++|-
T Consensus 150 i~~Ds~~~L~~~~~~~DvIYlDP 172 (250)
T d2oyra1 150 IHASSLTALTDITPRPQVVYLDP 172 (250)
T ss_dssp EESCHHHHSTTCSSCCSEEEECC
T ss_pred ecCcHHHHHhccCCCCCEEEECC
Confidence 999999999987 4799999997
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.7e-06 Score=71.26 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=66.1
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceE----------------------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVS---------------------- 97 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I---------------------- 97 (223)
.+.++|||||||.|. .++..+ . +...+|+.+|.++.+++.|++.+++. +..+
T Consensus 53 ~~g~~vLDiGcG~g~--~~~~~~--~-~~~~~v~~~D~S~~~i~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~ 126 (263)
T d2g72a1 53 VSGRTLIDIGSGPTV--YQLLSA--C-SHFEDITMTDFLEVNRQELGRWLQEE-PGAFNWSMYSQHACLIEGKGECWQDK 126 (263)
T ss_dssp SCCSEEEEETCTTCC--GGGTTG--G-GGCSEEEEECSCHHHHHHHHHHHTTC-TTCCCCHHHHHHHHHHHCSCCCHHHH
T ss_pred CCCcEEEEeccCCCH--HHHHHh--c-ccCCeEEEEeCCHHHHHHHHHHHhcC-cccccchhhhhhhhhhccccchhhhh
Confidence 367899999999995 343222 2 22358999999999999999988754 3211
Q ss_pred ---------EEEecchHH--HhcCC----CCccEEEE----eCC---CcccHHHHHHh-ccCCCceEEEEeCCC
Q 027409 98 ---------EVIVRQAEE--VMGEL----KGVDFLVV----DCT---SKDFARVLRFA-RFSNKGAVLAFKNAF 148 (223)
Q Consensus 98 ---------~li~GdA~e--vL~~L----~~fDfVFI----Da~---K~~Y~~~f~~~-~~l~~GgvIV~DNvl 148 (223)
.++..|..+ .+... ..||+|+. .+- .++|...++.+ +.|+|||++|.=.++
T Consensus 127 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 127 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp HHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 122222221 11111 25999976 433 34677777644 678999998876554
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=2.3e-05 Score=70.64 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=70.9
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh------cCce---EEE-EecchHH--H
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV------VGWV---SEV-IVRQAEE--V 107 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a------~G~~---I~l-i~GdA~e--v 107 (223)
..=.++|+||||+|. .++++|... +.++++.||+++.+++.|+++.++. +|.. +++ ..|+..+ .
T Consensus 215 kpgd~fLDLGCG~G~--~vl~aA~~~--g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~ 290 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGN--CVVQAALEC--GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 290 (406)
T ss_dssp CTTCEEEEESCTTSH--HHHHHHHHH--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred CCCCEEEeCCCCCcH--HHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence 334789999999997 777776443 2458999999999999999998764 1222 333 3454432 1
Q ss_pred hc-CCCCccEEEEeCC--CcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 108 MG-ELKGVDFLVVDCT--SKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 108 L~-~L~~fDfVFIDa~--K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.. .+...|+||+..- -.+....+. ..+.|+|||.||+-..+
T Consensus 291 ~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 291 VAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 22 2347899999742 334455554 44778999988876544
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.95 E-value=3e-05 Score=67.12 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~G 102 (223)
.++.....+...++....-.+||++-+|-|- =|+.+|.. +...|.|++.|.++.+....++++++. |.. |.+...
T Consensus 99 ~vQD~aS~l~~~~l~~~~g~~vlD~CAapGg--Kt~~l~~~-~~~~~~i~a~d~~~~r~~~l~~~~~r~-~~~~i~~~~~ 174 (313)
T d1ixka_ 99 YIQEASSMYPPVALDPKPGEIVADMAAAPGG--KTSYLAQL-MRNDGVIYAFDVDENRLRETRLNLSRL-GVLNVILFHS 174 (313)
T ss_dssp EECCHHHHHHHHHHCCCTTCEEEECCSSCSH--HHHHHHHH-TTTCSEEEEECSCHHHHHHHHHHHHHH-TCCSEEEESS
T ss_pred EEecccccchhhcccCCccceeeecccchhh--hhHhhhhh-cccccceeeeccCHHHHHHHHHHHHHH-Hhhccccccc
Confidence 3444455555555556666799999888885 56666643 556799999999999999999999999 999 888999
Q ss_pred chHHHhcCC-CCccEEEEeCC
Q 027409 103 QAEEVMGEL-KGVDFLVVDCT 122 (223)
Q Consensus 103 dA~evL~~L-~~fDfVFIDa~ 122 (223)
|+... +.. ..||.|++||-
T Consensus 175 d~~~~-~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 175 SSLHI-GELNVEFDKILLDAP 194 (313)
T ss_dssp CGGGG-GGGCCCEEEEEEECC
T ss_pred ccccc-ccccccccEEEEccc
Confidence 98874 333 47999999975
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=5.1e-05 Score=63.76 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=79.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcC--C-CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE--L-KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~--L-~~fDf 116 (223)
.+++|++||||.|+. +|-||.+ . ++-+++-+|.+..+...-+...++. |++ ++++.+.+.+.-.. . +.||+
T Consensus 70 ~~~~ilDiGSGaGfP--Gi~laI~-~-p~~~v~Lves~~KK~~FL~~v~~~L-~L~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFP--SLPIKIC-F-PHLHVTIVDSLNKRITFLEKLSEAL-QLENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTT--HHHHHHH-C-TTCEEEEEESCHHHHHHHHHHHHHH-TCSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCCCchH--HHHHHHh-C-CCccceeecchHHHHHHHHHHHHHh-CCCCcEEEeehhhhccccccccccceE
Confidence 578999999999994 5556544 2 4679999999999999999999999 999 99999999875432 2 47999
Q ss_pred EEEeCCCcccHHHHHHhccC-CCceEEEE
Q 027409 117 LVVDCTSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
|.-=|-. ....+++.+.++ ++||.+++
T Consensus 145 v~sRAva-~l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 145 VTARAVA-RLSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp EEEECCS-CHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEhhhh-CHHHHHHHHhhhcccCCEEEE
Confidence 9998854 667788877654 99998864
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=5.2e-06 Score=70.29 Aligned_cols=74 Identities=8% Similarity=-0.083 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
+++.+.+-+--.+.......|||||+|.|+ .|-.|+. .+.++++||+|++.++..++.+... -.++++.||+
T Consensus 5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~--LT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~ 76 (252)
T d1qyra_ 5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAA--LTEPVGE----RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDA 76 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCTTTT--THHHHHT----TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCG
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEECCCchH--HHHHHHc----cCCceEEEEeccchhHHHHHHhhhc--cchhHHhhhh
Confidence 455555555555555678899999999998 7767763 2468999999999988887744332 1299999999
Q ss_pred HH
Q 027409 105 EE 106 (223)
Q Consensus 105 ~e 106 (223)
++
T Consensus 77 l~ 78 (252)
T d1qyra_ 77 MT 78 (252)
T ss_dssp GG
T ss_pred hh
Confidence 97
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=1.6e-05 Score=68.30 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEec
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVR 102 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~G 102 (223)
+++.+.+-+--.+....-..|||||+|.|. .|-.|+.. +.+|++||+|+..++.-++.+... ... ++++.|
T Consensus 5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~--LT~~Ll~~----~~~v~aiE~D~~l~~~L~~~~~~~-~~~~~~~~i~~ 77 (278)
T d1zq9a1 5 KNPLIINSIIDKAALRPTDVVLEVGPGTGN--MTVKLLEK----AKKVVACELDPRLVAELHKRVQGT-PVASKLQVLVG 77 (278)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTST--THHHHHHH----SSEEEEEESCHHHHHHHHHHHTTS-TTGGGEEEEES
T ss_pred CCHHHHHHHHHHhCCCCCCEEEEECCCchH--HHHHHHhc----CCcEEEEEEccchhHHHHHHHhhh-ccccchhhhHH
Confidence 445444444444444456689999999998 77777643 469999999999999999999875 443 999999
Q ss_pred chHHHhcCCCCccEEE
Q 027409 103 QAEEVMGELKGVDFLV 118 (223)
Q Consensus 103 dA~evL~~L~~fDfVF 118 (223)
|+++. .+..++.|+
T Consensus 78 D~l~~--~~~~~~~vV 91 (278)
T d1zq9a1 78 DVLKT--DLPFFDTCV 91 (278)
T ss_dssp CTTTS--CCCCCSEEE
T ss_pred HHhhh--hhhhhhhhh
Confidence 99874 233444444
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=6.6e-05 Score=63.90 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ 103 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd 103 (223)
++....++...++....-.+||++-+|-|- =|+.||. .+. +|+|+++|+++.+....++++++. |+. +.....|
T Consensus 86 vQD~sS~l~~~~L~~~~g~~vLD~CAaPGg--Kt~~la~-l~~-~~~i~a~d~~~~R~~~l~~~~~r~-g~~~~~~~~~~ 160 (284)
T d1sqga2 86 VQDASAQGCMTWLAPQNGEHILDLCAAPGG--KTTHILE-VAP-EAQVVAVDIDEQRLSRVYDNLKRL-GMKATVKQGDG 160 (284)
T ss_dssp ECCHHHHTHHHHHCCCTTCEEEEESCTTCH--HHHHHHH-HCT-TCEEEEEESSTTTHHHHHHHHHHT-TCCCEEEECCT
T ss_pred eccccccccccccCccccceeEeccCcccc--chhhhhh-hhh-hhhhhhhhcchhhhhhHhhhhhcc-cccceeeeccc
Confidence 444556666666667777899999888884 6667764 333 599999999999999999999999 999 6666555
Q ss_pred hHHHhcCC-CCccEEEEeCCC
Q 027409 104 AEEVMGEL-KGVDFLVVDCTS 123 (223)
Q Consensus 104 A~evL~~L-~~fDfVFIDa~K 123 (223)
+...-... ..||-|++||--
T Consensus 161 ~~~~~~~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 161 RYPSQWCGEQQFDRILLDAPC 181 (284)
T ss_dssp TCTHHHHTTCCEEEEEEECCC
T ss_pred cccchhcccccccEEEEeccc
Confidence 54322222 479999999743
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.69 E-value=7.7e-07 Score=75.23 Aligned_cols=76 Identities=12% Similarity=-0.039 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ 103 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd 103 (223)
.+++.+.+-+--.+......+|||||+|.|. .|-.|+.. +.+|++||+|+++++.+++.+... . .++++.||
T Consensus 12 L~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~--LT~~L~~~----~~~v~aIE~D~~l~~~l~~~~~~~-~-n~~ii~~D 83 (245)
T d1yuba_ 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGH--LTTKLAKI----SKQVTSIELDSHLFNLSSEKLKLN-T-RVTLIHQD 83 (245)
T ss_dssp CCCTTTHHHHHHHCCCCSSEEEEECSCCCSS--CSHHHHHH----SSEEEESSSSCSSSSSSSCTTTTC-S-EEEECCSC
T ss_pred cCCHHHHHHHHHhcCCCCCCeEEEECCCccH--HHHHHHhh----cCceeEeeecccchhhhhhhhhhc-c-chhhhhhh
Confidence 4455554444444555677899999999998 67677653 468999999999988887766543 1 29999999
Q ss_pred hHHH
Q 027409 104 AEEV 107 (223)
Q Consensus 104 A~ev 107 (223)
+++.
T Consensus 84 ~l~~ 87 (245)
T d1yuba_ 84 ILQF 87 (245)
T ss_dssp CTTT
T ss_pred hhcc
Confidence 9974
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.47 E-value=0.00017 Score=57.70 Aligned_cols=106 Identities=11% Similarity=-0.110 Sum_probs=65.2
Q ss_pred hcCCCeEEEEccCcchHHHHHHHH--HhcCC--CCcEEEEEeCCchHHHHHH------------------HHHHhhcCce
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLA--IAARH--TCARHVCIVPDERSRLAYV------------------KAMYDVVGWV 96 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la--~A~~~--~~g~i~TIE~d~e~~~~Ar------------------~~~~~a~G~~ 96 (223)
..++-+|+.+|||+|=-.++|++. ++... ..-+|+.+|+|+..++.|+ ++|.+. +..
T Consensus 22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~-~~~ 100 (193)
T d1af7a2 22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRG-TGP 100 (193)
T ss_dssp SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEEC-CTT
T ss_pred cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeec-CCC
Confidence 346669999999999544555543 33222 2247999999999999997 334333 211
Q ss_pred --------------EEEEecchHHHhc-CCCCccEEEEeC-----CCcccHHHHHHh-ccCCCceEEEEe
Q 027409 97 --------------SEVIVRQAEEVMG-ELKGVDFLVVDC-----TSKDFARVLRFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 --------------I~li~GdA~evL~-~L~~fDfVFIDa-----~K~~Y~~~f~~~-~~l~~GgvIV~D 145 (223)
+++...+-++.-+ ..++||+||.=- +++.-.+.++.+ ..|+|||+++.=
T Consensus 101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 101 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3333333333211 124799999743 233445666644 677999998753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.22 E-value=0.00054 Score=58.12 Aligned_cols=92 Identities=5% Similarity=-0.091 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHH----HhcCCCeEEEEccCcchHHHHHHHHHh---cCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEE
Q 027409 26 ESGVAELLSAMA----AGWNAKLIVEAWTHGGPITTSIGLAIA---ARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSE 98 (223)
Q Consensus 26 ~p~~g~fL~~L~----~~~~ak~ILEIGT~~Gys~Stl~la~A---~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~ 98 (223)
++...+++..++ ......+|||.+||+|. ..+.++.. .......++.+|+|+..+..|+.++... +..+.
T Consensus 98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~--~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-~~~~~ 174 (328)
T d2f8la1 98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTAN--LLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMT 174 (328)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSH--HHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcch--hHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-hhhhh
Confidence 344666666554 33455679999999995 33333221 1123458999999999999999999887 77788
Q ss_pred EEecchHHHhcCCCCccEEEEeC
Q 027409 99 VIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 99 li~GdA~evL~~L~~fDfVFIDa 121 (223)
+..+|..+..+. .+||+|+.+-
T Consensus 175 ~~~~d~~~~~~~-~~fD~vi~NP 196 (328)
T d2f8la1 175 LLHQDGLANLLV-DPVDVVISDL 196 (328)
T ss_dssp EEESCTTSCCCC-CCEEEEEEEC
T ss_pred hhcccccccccc-ccccccccCC
Confidence 889998754332 4799999884
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.21 E-value=0.00094 Score=52.44 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
.+++.+||.-++...+..+|||.|||+|. ..+.+... ......++.+|+|+.....++ ...++.||.+
T Consensus 4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~--fl~~~~~~-~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~ 71 (223)
T d2ih2a1 4 PPEVVDFMVSLAEAPRGGRVLEPACAHGP--FLRAFREA-HGTAYRFVGVEIDPKALDLPP---------WAEGILADFL 71 (223)
T ss_dssp CHHHHHHHHHHCCCCTTCEEEEETCTTCH--HHHHHHHH-HCSCSEEEEEESCTTTCCCCT---------TEEEEESCGG
T ss_pred CHHHHHHHHHhcCCCCcCEEEECCCchHH--HHHHHHHh-ccccceEEeeecCHHHHhhcc---------cceeeeeehh
Confidence 45688999999988899999999999996 44444433 344578999999987532211 1688999988
Q ss_pred HHhcCCCCccEEEEeC
Q 027409 106 EVMGELKGVDFLVVDC 121 (223)
Q Consensus 106 evL~~L~~fDfVFIDa 121 (223)
+.... ..||+|+.+-
T Consensus 72 ~~~~~-~~fd~ii~np 86 (223)
T d2ih2a1 72 LWEPG-EAFDLILGNP 86 (223)
T ss_dssp GCCCS-SCEEEEEECC
T ss_pred ccccc-cccceecccC
Confidence 75432 5799999773
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.15 E-value=0.00061 Score=56.51 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=68.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++||+||+|.|. .++.++.+ .++-+++-.|. |+ .++.+ +.. |+++.||..+-. .++|+
T Consensus 78 ~~~~~~vvDvGGG~G~--~~~~l~~~--~P~l~~~v~Dl-p~-------vi~~~-~~~~rv~~~~gD~f~~~---p~aD~ 141 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGT--TAKIICET--FPKLKCIVFDR-PQ-------VVENL-SGSNNLTYVGGDMFTSI---PNADA 141 (244)
T ss_dssp HTTCSEEEEETCTTSH--HHHHHHHH--CTTCEEEEEEC-HH-------HHTTC-CCBTTEEEEECCTTTCC---CCCSE
T ss_pred ccCceEEEEecCCccH--HHHHHHHh--CCCCeEEEecC-HH-------HHHhC-cccCceEEEecCcccCC---CCCcE
Confidence 3578999999999997 66677655 34678888887 33 24566 666 999999987643 36899
Q ss_pred EEE-----eCCCcccHHHHHHhc-cCCCc----eEEEEeCCCCC
Q 027409 117 LVV-----DCTSKDFARVLRFAR-FSNKG----AVLAFKNAFQR 150 (223)
Q Consensus 117 VFI-----Da~K~~Y~~~f~~~~-~l~~G----gvIV~DNvl~~ 150 (223)
+++ |-..++-.+.|..++ -++|| -++|+|.++..
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred EEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 998 555555567777553 45665 47888888753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.90 E-value=0.0014 Score=54.20 Aligned_cols=95 Identities=6% Similarity=-0.025 Sum_probs=66.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDF 116 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDf 116 (223)
..+.++||+||+|.|. .++.++.+. |+-+.|-.|. |+. ++++ +.. |+++.||..+-++ ..|.
T Consensus 79 f~~~~~vlDiGGG~G~--~~~~l~~~~--P~l~~~v~Dl-p~v-------i~~~-~~~~ri~~~~gd~~~~~p---~~D~ 142 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGR--NLELIISKY--PLIKGINFDL-PQV-------IENA-PPLSGIEHVGGDMFASVP---QGDA 142 (244)
T ss_dssp TTTCSEEEEETCTTSH--HHHHHHHHC--TTCEEEEEEC-HHH-------HTTC-CCCTTEEEEECCTTTCCC---CEEE
T ss_pred ccCCcEEEEecCCCcH--HHHHHHHHC--CCCeEEEecc-hhh-------hhcc-CCCCCeEEecCCcccccc---cceE
Confidence 3567999999999997 677777653 5678888887 433 4455 544 9999999876443 5799
Q ss_pred EEEeCCCccc-----HHHHHHh-ccCCCce-EEEEeCCCC
Q 027409 117 LVVDCTSKDF-----ARVLRFA-RFSNKGA-VLAFKNAFQ 149 (223)
Q Consensus 117 VFIDa~K~~Y-----~~~f~~~-~~l~~Gg-vIV~DNvl~ 149 (223)
+++=.--.+| ...+..+ +-++||| +||+|.++.
T Consensus 143 ~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 9886544444 4556544 4467766 777777764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.001 Score=51.17 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=60.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe-cchHHHhcCCCCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV-RQAEEVMGELKGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~-GdA~evL~~L~~fD 115 (223)
...-.+||-+|+| |.+..++.+|++ .+++++.++.++++.+.|++. |.. |.... .+..+.+ .+.||
T Consensus 25 ~~~g~~vlI~GaG-~vG~~a~q~ak~---~G~~vi~~~~~~~k~~~a~~l-----Ga~~~i~~~~~~~~~~~~--~~~~d 93 (168)
T d1piwa2 25 CGPGKKVGIVGLG-GIGSMGTLISKA---MGAETYVISRSSRKREDAMKM-----GADHYIATLEEGDWGEKY--FDTFD 93 (168)
T ss_dssp CSTTCEEEEECCS-HHHHHHHHHHHH---HTCEEEEEESSSTTHHHHHHH-----TCSEEEEGGGTSCHHHHS--CSCEE
T ss_pred cCCCCEEEEECCC-CcchhHHHHhhh---ccccccccccchhHHHHhhcc-----CCcEEeeccchHHHHHhh--hcccc
Confidence 3345789999986 554456666654 378999999999999888763 544 22211 2222222 25799
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+|+ |+.-......|+ .+..+++||.|+.=-
T Consensus 94 ~vi-~~~~~~~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 94 LIV-VCASSLTDIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEE-ECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred eEE-EEecCCccchHHHHHHHhhccceEEEec
Confidence 887 554444443454 456678899887644
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.68 E-value=0.002 Score=51.35 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=66.3
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch---HHHhcCC--C
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA---EEVMGEL--K 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA---~evL~~L--~ 112 (223)
....-..+|+...|.|- -+-.+.. .+|+|+.||+||+.+..|++...+ + +.++.++- .+.++.+ +
T Consensus 15 ~~~~g~~~vD~T~G~GG--hs~~iL~----~~~~viaiD~D~~ai~~a~~~~~~--~--~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAG--HARGILE----RGGRVIGLDQDPEAVARAKGLHLP--G--LTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp TCCTTCEEEETTCTTSH--HHHHHHH----TTCEEEEEESCHHHHHHHHHTCCT--T--EEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCCEEEEeCCCCcH--HHHHHhc----ccCcEEEEhhhhhHHHHHhhcccc--c--eeEeehHHHHHHHHHHHcCCC
Confidence 34566789997777762 3445543 268999999999999988864222 2 56666654 4455554 4
Q ss_pred CccEEEEeCCCcccH------------HHHHH-hccCCCceEEEEeCC
Q 027409 113 GVDFLVVDCTSKDFA------------RVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~------------~~f~~-~~~l~~GgvIV~DNv 147 (223)
.+|.|+.|-.-..+. ..++. ...+++||.+++=+.
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 799999998654442 12332 245688998886553
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.59 E-value=0.0015 Score=49.84 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=61.3
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEe---cchH---HHhcCC--
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIV---RQAE---EVMGEL-- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~---GdA~---evL~~L-- 111 (223)
..-.+||=+|+| |.+..++.+|++ .+++|+.+|.++++.+.|++.-... +-... .+.. +.+...
T Consensus 25 ~~g~~vlV~G~G-~vG~~~~~~ak~---~Ga~vi~v~~~~~r~~~a~~~ga~~----~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLGTTVLVIGAG-PIGLVSVLAAKA---YGAFVVCTARSPRRLEVAKNCGADV----TLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTTCEEEEECCS-HHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTTCSE----EEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCCEEEEEccc-ccchhhHhhHhh---hcccccccchHHHHHHHHHHcCCcE----EEeccccccccchhhhhhhcccc
Confidence 445788889976 444455566654 3689999999999999998853322 11111 1222 333332
Q ss_pred CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCC
Q 027409 112 KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 112 ~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~ 149 (223)
..+|.| +|+. ..+..++ .++.+++||.|+.=.+..
T Consensus 97 ~g~D~v-id~~--g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 97 DLPNVT-IDCS--GNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp SCCSEE-EECS--CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred cCCcee-eecC--CChHHHHHHHHHHhcCCceEEEecCC
Confidence 369977 5554 2344565 457779999998766543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.28 E-value=0.0061 Score=46.19 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=65.0
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CC
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KG 113 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~ 113 (223)
+....-++||=+|+| |.+..++.+|++. +.+|+.++.++++.+.|++ . |.. |.....|..+.+.+. ..
T Consensus 23 ~~~~~g~~VlV~GaG-~vG~~~~~~ak~~---G~~Vi~~~~~~~~~~~a~~----~-Ga~~~i~~~~~~~~~~~~~~~~g 93 (166)
T d1llua2 23 TNARPGQWVAISGIG-GLGHVAVQYARAM---GLHVAAIDIDDAKLELARK----L-GASLTVNARQEDPVEAIQRDIGG 93 (166)
T ss_dssp HTCCTTCEEEEECCS-HHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHHSS
T ss_pred hCCCCCCEEEEeecc-ccHHHHHHHHHHc---CCccceecchhhHHHhhhc----c-CccccccccchhHHHHHHHhhcC
Confidence 344455788889975 5555666666542 6899999999999888765 4 554 444445666655544 46
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+|.+++++... ..++ .++.+++||.++.=
T Consensus 94 ~~~~i~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 94 AHGVLVTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEEECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred Ccccccccccc---hHHHHHHHHhcCCcEEEEE
Confidence 77777776553 3455 55777999998863
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.14 E-value=0.0035 Score=51.31 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=62.8
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEE
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfV 117 (223)
.+.++||+||+|.|. .++.++.+. |+.+.+-.|.- +. ++.+ ... ++++.||-.+-+| ..|++
T Consensus 80 ~~~~~vvDvGGG~G~--~~~~l~~~~--P~l~~~v~Dlp-~v-------i~~~-~~~~r~~~~~~d~~~~~P---~ad~~ 143 (243)
T d1kyza2 80 EGLKSLVDVGGGTGA--VINTIVSKY--PTIKGINFDLP-HV-------IEDA-PSYPGVEHVGGDMFVSIP---KADAV 143 (243)
T ss_dssp SSCSEEEEETCTTSH--HHHHHHHHC--TTSEEEEEECT-TT-------TTTC-CCCTTEEEEECCTTTCCC---CCSCE
T ss_pred cCCcEEEEecCCCcH--HHHHHHHHC--CCCeEEEcccH-Hh-------hhhc-ccCCceEEecccccccCC---CcceE
Confidence 457899999999998 777887653 56788888884 33 2334 333 9999999876555 34555
Q ss_pred EE-----eCCCcccHHHHHHh-ccCCCce-EEEEeCCCCC
Q 027409 118 VV-----DCTSKDFARVLRFA-RFSNKGA-VLAFKNAFQR 150 (223)
Q Consensus 118 FI-----Da~K~~Y~~~f~~~-~~l~~Gg-vIV~DNvl~~ 150 (223)
|+ |-.-+.-...+..+ +.++||| ++|+|.++..
T Consensus 144 ~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~ 183 (243)
T d1kyza2 144 FMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPV 183 (243)
T ss_dssp ECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECS
T ss_pred EEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 54 33333445666655 4455555 7777777653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.12 E-value=0.011 Score=44.75 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=62.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCT 122 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~ 122 (223)
|+|+=||+ |..+++|+.+........+|+-+|+|++..+.|++. |..-+.......... ...|+|++-.-
T Consensus 2 k~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-----~~~~~~~~~~~~~~~---~~~dlIila~p 71 (171)
T d2g5ca2 2 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-----GIIDEGTTSIAKVED---FSPDFVMLSSP 71 (171)
T ss_dssp CEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-----TSCSEEESCGGGGGG---TCCSEEEECSC
T ss_pred CEEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-----hcchhhhhhhhhhhc---cccccccccCC
Confidence 47888998 567788777665444456899999999988877754 331122222211111 26899999999
Q ss_pred CcccHHHHHHhcc-CCCceEEEEeCC
Q 027409 123 SKDFARVLRFARF-SNKGAVLAFKNA 147 (223)
Q Consensus 123 K~~Y~~~f~~~~~-l~~GgvIV~DNv 147 (223)
...+.++++.+.+ ++++ .+|.|..
T Consensus 72 ~~~~~~vl~~l~~~~~~~-~ii~d~~ 96 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSED-ATVTDQG 96 (171)
T ss_dssp HHHHHHHHHHHHHHSCTT-CEEEECC
T ss_pred chhhhhhhhhhhcccccc-ccccccc
Confidence 8899999987754 4665 4556654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.11 E-value=0.0052 Score=47.36 Aligned_cols=96 Identities=14% Similarity=0.016 Sum_probs=65.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDF 116 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDf 116 (223)
.-.+||-+|+| |.+.+++.+|++.. ..+|+++|.++++.+.|+++ |.. |.....|..+.+.++ +.||.
T Consensus 28 ~g~~VlI~G~G-~iG~~~~~~ak~~g--~~~v~~~~~~~~k~~~a~~~-----Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 28 PASSFVTWGAG-AVGLSALLAAKVCG--ASIIIAVDIVESRLELAKQL-----GATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp TTCEEEEESCS-HHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHHH-----TCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCEEEEeCCC-HHHhhhhhcccccc--cceeeeeccHHHHHHHHHHc-----CCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 44579999985 55556667766542 24788999999998888764 543 555556777777665 36998
Q ss_pred EEEeCCCcccHHHHHH-hccCCCceEEEEeCC
Q 027409 117 LVVDCTSKDFARVLRF-ARFSNKGAVLAFKNA 147 (223)
Q Consensus 117 VFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DNv 147 (223)
||--.... ..++. ++.+++||.++.=-+
T Consensus 100 vid~~G~~---~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTGSP---EILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCCcH---HHHHHHHhcccCceEEEEEee
Confidence 87665433 45553 466688998875443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0093 Score=51.03 Aligned_cols=76 Identities=5% Similarity=-0.112 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHHHhc------CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceE
Q 027409 24 IKESGVAELLSAMAAGW------NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVS 97 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~------~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I 97 (223)
++++.+.+-+--.+.+. ....|||||.|.|. .|-.|..+..+ -+|+.||.|+...+.-++.++.. .+
T Consensus 20 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~--LT~~Ll~~~~~--~~v~~iE~D~~~~~~L~~~~~~~---~~ 92 (322)
T d1i4wa_ 20 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGI--QSAIFYNKYCP--RQYSLLEKRSSLYKFLNAKFEGS---PL 92 (322)
T ss_dssp BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCH--HHHHHHHHHCC--SEEEEECCCHHHHHHHHHHTTTS---SC
T ss_pred cCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCH--HHHHHHhcCCC--CEEEEEECCHHHHHHHHHhccCC---Cc
Confidence 67777665554444333 35579999999997 66677654322 38999999999887766655432 27
Q ss_pred EEEecchHH
Q 027409 98 EVIVRQAEE 106 (223)
Q Consensus 98 ~li~GdA~e 106 (223)
+++.+|++.
T Consensus 93 ~ii~~D~l~ 101 (322)
T d1i4wa_ 93 QILKRDPYD 101 (322)
T ss_dssp EEECSCTTC
T ss_pred EEEeCchhh
Confidence 999999974
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0039 Score=47.88 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=62.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fD 115 (223)
.-++||=+|.+.|.+..++.+|.+. +.+++.+..++++.+.+++ . |.. |.....|-.+.+.++ ..+|
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~---G~~vi~~~~~~~~~~~~~~----~-Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY---GLKILGTAGTEEGQKIVLQ----N-GAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHH----T-TCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEecccccccccccccccc---Ccccccccccccccccccc----c-CcccccccccccHHHHhhhhhccCCce
Confidence 4457999997656655677777553 6789998888887777764 4 665 555556666666543 3699
Q ss_pred EEEEeCCCcccHHHHHH-hccCCCceEEEE
Q 027409 116 FLVVDCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
.|| |+.-. +.++. +..+++||.+|.
T Consensus 100 ~v~-d~~g~---~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 100 III-EMLAN---VNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEE-ESCHH---HHHHHHHHHEEEEEEEEE
T ss_pred EEe-ecccH---HHHHHHHhccCCCCEEEE
Confidence 654 66533 45654 466788898886
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0073 Score=46.59 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH---hcCC---CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV---MGEL---KG 113 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev---L~~L---~~ 113 (223)
.+||=+|+| |.+..++.+|++. +. +|+.+|.++++.+.|++ . |-. |.....+..+. +.++ ..
T Consensus 30 ~~VlV~GaG-~iG~~~~~~ak~~---Ga~~Vi~~~~~~~~~~~a~~----l-Ga~~vi~~~~~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 30 KTVVIQGAG-PLGLFGVVIARSL---GAENVIVIAGSPNRLKLAEE----I-GADLTLNRRETSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHT---TBSEEEEEESCHHHHHHHHH----T-TCSEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCC-ccchhheeccccc---cccccccccccccccccccc----c-cceEEEeccccchHHHHHHHHHhhCCCC
Confidence 789999985 5555666776553 54 89999999999988875 3 544 44445555443 3332 26
Q ss_pred ccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCC
Q 027409 114 VDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNA 147 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNv 147 (223)
+|.|| |+.- .+..++ .+..+++||.++.=-+
T Consensus 101 ~Dvvi-d~vG--~~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 101 ADFIL-EATG--DSRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EEEEE-ECSS--CTTHHHHHHHHEEEEEEEEECCC
T ss_pred ceEEe-ecCC--chhHHHHHHHHhcCCCEEEEEee
Confidence 99876 6542 233454 4466688888765443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.012 Score=44.73 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=67.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C--Ccc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K--GVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~--~fD 115 (223)
.-++||=.|.+.|.+..++.+|.+ .+++++.++.++++.+.+++ . |.. |.....|..+.+.++ + .+|
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~---~Ga~Vi~~~~s~~k~~~~~~----l-Ga~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKA---LGAKLIGTVGTAQKAQSALK----A-GAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEEccccccchHHHHHHHH---hCCeEeecccchHHHHHHHh----c-CCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 346899998887775566677654 37899999999998877764 4 655 555667777766655 2 588
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
+++|+.-.. .++ .+..++++|-++.--.+...
T Consensus 100 -~v~d~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~ 132 (179)
T d1qora2 100 -VVYDSVGRD---TWERSLDCLQRRGLMVSFGNSSGA 132 (179)
T ss_dssp -EEEECSCGG---GHHHHHHTEEEEEEEEECCCTTCC
T ss_pred -EEEeCccHH---HHHHHHHHHhcCCeeeecccccCC
Confidence 477887554 344 44566778877765544433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.49 E-value=0.022 Score=43.65 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=61.7
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEE
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFL 117 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfV 117 (223)
....-++||=.|.+.|.+..++.+|++. +++++.++.++++.+.+++ . |...-+-..+..+.+.....+|+|
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~---G~~vi~~~~~~~~~~~~~~----l-Ga~~~i~~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM---GLRVLAAASRPEKLALPLA----L-GAEEAATYAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT---TCEEEEEESSGGGSHHHHH----T-TCSEEEEGGGHHHHHHHTTSEEEE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc---ccccccccccccccccccc----c-ccceeeehhhhhhhhhcccccccc
Confidence 3445567888886556655666777653 6799999999998877764 4 665222234444444444579987
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+|+.-+ .++ .+..+++||.+|.=-
T Consensus 96 -~d~~G~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 96 -LEVRGK----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp -EECSCT----THHHHHTTEEEEEEEEEC-
T ss_pred -ccccch----hHHHHHHHHhcCCcEEEEe
Confidence 577532 344 456678899888643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.34 E-value=0.0077 Score=46.72 Aligned_cols=99 Identities=15% Similarity=0.006 Sum_probs=62.7
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-C-
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-K- 112 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~- 112 (223)
....=.+||=+|+| |.+.+++.+|++ -+. +|+.+|.++++.+.|++ . |.. |.....+..+.+.++ +
T Consensus 24 ~~~~g~~VlI~GaG-~vGl~~~q~ak~---~Ga~~Vi~~d~~~~r~~~a~~----l-Ga~~~i~~~~~~~~~~v~~~t~g 94 (174)
T d1jqba2 24 DIEMGSSVVVIGIG-AVGLMGIAGAKL---RGAGRIIGVGSRPICVEAAKF----Y-GATDILNYKNGHIEDQVMKLTNG 94 (174)
T ss_dssp TCCTTCCEEEECCS-HHHHHHHHHHHT---TTCSCEEEECCCHHHHHHHHH----H-TCSEEECGGGSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEEcCC-cchhhhhhhhhc---ccccccccccchhhhHHHHHh----h-CccccccccchhHHHHHHHHhhc
Confidence 34445678889986 554466666553 243 79999999999888864 4 644 555566666666554 2
Q ss_pred -CccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 113 -GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 -~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.+|+|| |+.-. ...++ .+..+++||.++.=-+.
T Consensus 95 ~G~D~vi-d~~g~--~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 95 KGVDRVI-MAGGG--SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SCEEEEE-ECSSC--TTHHHHHHHHEEEEEEEEECCCC
T ss_pred cCcceEE-EccCC--HHHHHHHHHHHhcCCEEEEEeec
Confidence 599765 55422 23344 34555788988875543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.32 E-value=0.033 Score=43.89 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=72.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
..+|.+||=||.++- ...+++.|.. -++.++-+|.++++.+..+..+... ++...-+...+-+.+...|+|.
T Consensus 29 gv~pa~V~ViGaGva-G~~A~~~A~~---lGA~V~~~D~~~~~l~~l~~~~~~~----~~~~~~~~~~l~~~~~~aDivI 100 (168)
T d1pjca1 29 GVKPGKVVILGGGVV-GTEAAKMAVG---LGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLI 100 (168)
T ss_dssp TBCCCEEEEECCSHH-HHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCCcEEEEECCChH-HHHHHHHHhh---CCCEEEEEeCcHHHHHHHHHhhccc----ceeehhhhhhHHHhhccCcEEE
Confidence 357999999999853 2355555543 3789999999999988877776665 6777777655544456789887
Q ss_pred EeCC-C-cccHHHH--HHhccCCCceEEEEeCCCCCCc
Q 027409 119 VDCT-S-KDFARVL--RFARFSNKGAVLAFKNAFQRST 152 (223)
Q Consensus 119 IDa~-K-~~Y~~~f--~~~~~l~~GgvIV~DNvl~~g~ 152 (223)
-=+- + ..-+.++ +.++.++||+|||.=.+=++|.
T Consensus 101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~ 138 (168)
T d1pjca1 101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGC 138 (168)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred EeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCc
Confidence 5542 1 1223333 4667789999988666656664
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.11 E-value=0.012 Score=44.53 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=63.5
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CC
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KG 113 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~ 113 (223)
.....+||=+|++.|.+..++.++.+.. ..+|+.++.++++.+.+++ . |.. |.....|..+.+.+. ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g--~~~V~~~~~~~~~~~~~~~----~-Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS--GATIIGVDVREEAVEAAKR----A-GADYVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT--CCEEEEEESSHHHHHHHHH----H-TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEEeccccceeeeeecccccc--cccccccccchhhHHHHHH----c-CCceeeccCCcCHHHHHHHHhhccc
Confidence 3455689999976555445656665432 2589999999999888876 3 543 333344555544433 26
Q ss_pred ccEEEEeCCCcccHHHHHH-hccCCCceEEEEeCCC
Q 027409 114 VDFLVVDCTSKDFARVLRF-ARFSNKGAVLAFKNAF 148 (223)
Q Consensus 114 fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~DNvl 148 (223)
||.|| |+. .-...++. +..+++||.++.=.+.
T Consensus 98 ~d~vi-d~~--g~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 98 VDAVI-DLN--NSEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEE-ESC--CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred chhhh-ccc--ccchHHHhhhhhcccCCEEEEeccc
Confidence 99655 554 33455654 4667899998866543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.11 E-value=0.032 Score=48.74 Aligned_cols=92 Identities=8% Similarity=-0.049 Sum_probs=66.8
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCC-----------cEEEEEeCCchHHHHHHHHHHhhc
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTC-----------ARHVCIVPDERSRLAYVKAMYDVV 93 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~-----------g~i~TIE~d~e~~~~Ar~~~~~a~ 93 (223)
-++++.+|+--++.-....+|++-.||+|- .-+..+....... ..+..+|+|+..+..|+-|+.-.
T Consensus 146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~--fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~- 222 (425)
T d2okca1 146 TPRPLIQAMVDCINPQMGETVCDPACGTGG--FLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH- 222 (425)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTCH--HHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT-
T ss_pred cchhhhHhhheeccCcccceeeccccccCc--cHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc-
Confidence 356688888888877777899999999994 3333322222111 24999999999999999998876
Q ss_pred Cce---EEEEecchHHHhcCCCCccEEEEe
Q 027409 94 GWV---SEVIVRQAEEVMGELKGVDFLVVD 120 (223)
Q Consensus 94 G~~---I~li~GdA~evL~~L~~fDfVFID 120 (223)
|.. +.+..+|.++.-+ ...||+|+..
T Consensus 223 g~~~~~~~i~~~d~l~~~~-~~~fD~Ii~N 251 (425)
T d2okca1 223 GIGTDRSPIVCEDSLEKEP-STLVDVILAN 251 (425)
T ss_dssp TCCSSCCSEEECCTTTSCC-SSCEEEEEEC
T ss_pred CCccccceeecCchhhhhc-ccccceEEec
Confidence 654 7888999876322 2479999876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.07 E-value=0.047 Score=42.08 Aligned_cols=102 Identities=7% Similarity=-0.174 Sum_probs=63.0
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch-HHHhcCC---CCccEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA-EEVMGEL---KGVDFL 117 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA-~evL~~L---~~fDfV 117 (223)
=..||=+|+| |.+.+++.++.+. ...+|+.+|.++++.+.|+++=+.. -|.....|. .+.+.++ ..+|.+
T Consensus 30 g~tVlI~G~G-gvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~~GA~~---~in~~~~~~~~~~~~~~~~g~G~d~v 103 (176)
T d1d1ta2 30 GSTCVVFGLG-GVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMAVGATE---CISPKDSTKPISEVLSEMTGNNVGYT 103 (176)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHHTSCCCEE
T ss_pred CCEEEEECCC-chhHHHHHHHHHc--CCceEEEecCcHHHHHHHHhcCCcE---EECccccchHHHHHHHHhccccceEE
Confidence 3469999986 6555665665432 1368999999999999999875543 033334443 3333332 379988
Q ss_pred EEeCCCcccHHHHHHhccC-CCceEEEEeCCCCCC
Q 027409 118 VVDCTSKDFARVLRFARFS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 118 FIDa~K~~Y~~~f~~~~~l-~~GgvIV~DNvl~~g 151 (223)
+...... ......+..+ +++|.+|.=-+...+
T Consensus 104 i~~~g~~--~~~~~a~~~~~~~~G~~v~vG~~~~~ 136 (176)
T d1d1ta2 104 FEVIGHL--ETMIDALASCHMNYGTSVVVGVPPSA 136 (176)
T ss_dssp EECSCCH--HHHHHHHTTSCTTTCEEEECSCCCTT
T ss_pred EEeCCch--HHHHHHHHHhhcCCeEEEEEEccccc
Confidence 8877532 2233455544 666777766555433
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.07 E-value=0.02 Score=45.17 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=67.7
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--- 111 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--- 111 (223)
+....=.+||=+|+| |.+..++.+|.+. ..++|+.+|.++++.+.|+++ |.. +.-...|..+.+.++
T Consensus 21 a~v~~G~tVlV~GaG-~vGl~a~~~ak~~--ga~~Vi~~d~~~~rl~~a~~~-----Ga~~~~~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 21 AGVGPGSTVYVAGAG-PVGLAAAASARLL--GAAVVIVGDLNPARLAHAKAQ-----GFEIADLSLDTPLHEQIAALLGE 92 (195)
T ss_dssp TTCCTTCEEEEECCS-HHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT-----TCEEEETTSSSCHHHHHHHHHSS
T ss_pred hCCCCCCEEEEECcC-HHHHHHHHHHHhh--cccceeeecccchhhHhhhhc-----cccEEEeCCCcCHHHHHHHHhCC
Confidence 455566789999986 4333555665543 245999999999999888754 554 222456666655554
Q ss_pred CCccEEEEeCCC-c------------ccHHHHHH-hccCCCceEEEEeCCCC
Q 027409 112 KGVDFLVVDCTS-K------------DFARVLRF-ARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 112 ~~fDfVFIDa~K-~------------~Y~~~f~~-~~~l~~GgvIV~DNvl~ 149 (223)
..+|.+| |+.- + .-...++. ++.+++||.|+.--+..
T Consensus 93 ~g~D~vi-d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 93 PEVDCAV-DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp SCEEEEE-ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred CCcEEEE-ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 2699987 5432 1 12467774 46779999998776643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.15 Score=38.36 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=59.4
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEE
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
...-.+||=+|+| |.+..++.+|++. +.+++.++.++++.+.|++ . |...-+-..+-.......+.+|.+|
T Consensus 28 ~~~G~~VlI~GaG-~vG~~a~qlak~~---Ga~~i~~~~~~~~~~~a~~----l-Gad~~i~~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 28 AGPGKKVGVVGIG-GLGHMGIKLAHAM---GAHVVAFTTSEAKREAAKA----L-GADEVVNSRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHH----H-TCSEEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCCEEEEeccc-hHHHHHHHHhhcc---cccchhhccchhHHHHHhc----c-CCcEEEECchhhHHHHhcCCCceee
Confidence 3444788999975 5655666776653 6788889999998877764 4 5542222233333333446899887
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEEe
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
....-... ++ .+..+++||.++.=
T Consensus 99 d~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 99 NTVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ECCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeeecchh---HHHHHHHHhcCCEEEEe
Confidence 76654432 33 34566888888863
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.097 Score=39.45 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=60.1
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-----C
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-----K 112 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-----~ 112 (223)
.-.+||=+|+| +.+..++.+|.+. ++ +|+.+|.++++.+.|+++ |.. +..-.-+..+....+ .
T Consensus 26 ~gd~VlI~G~G-~iG~~~~~~a~~~---G~~~Vi~~d~~~~rl~~a~~~-----Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 26 LGHKVLVCGAG-PIGMVTLLVAKAM---GAAQVVVTDLSATRLSKAKEI-----GADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHT-----TCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCC-ccHHHHHHHHHHc---CCceEEeccCCHHHHHHHHHh-----CCcccccccccccccccccccccCCC
Confidence 34689999985 4444555665542 44 899999999999988764 544 332233433333322 2
Q ss_pred CccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCC
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAF 148 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl 148 (223)
.+|.|| |+.-. ...++ .+..+++||.++.=-+.
T Consensus 97 g~Dvvi-d~~G~--~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 97 KPEVTI-ECTGA--EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CCSEEE-ECSCC--HHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceEEE-eccCC--chhHHHHHHHhcCCCEEEEEecC
Confidence 689855 55433 34566 45677899988876543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.70 E-value=0.036 Score=41.40 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=61.9
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC-CCc
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL-KGV 114 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L-~~f 114 (223)
....-.+||=+|+| +.+..++.+|.+ .+.+++.++.++++.+.+|+ . |.. +.....|..+.+.++ ..+
T Consensus 24 ~~~~g~~vlv~G~G-~iG~~a~~~a~~---~g~~v~~~~~~~~r~~~~k~----~-Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 24 GAKPGEWVAIYGIG-GLGHVAVQYAKA---MGLNVVAVDIGDEKLELAKE----L-GADLVVNPLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp TCCTTCEEEEECCS-TTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----T-TCSEEECTTTSCHHHHHHHHHSSE
T ss_pred CCCCCCEEEEeecc-cchhhhhHHHhc---CCCeEeccCCCHHHhhhhhh----c-CcceecccccchhhhhcccccCCC
Confidence 34445677878875 333344454443 46799999999999887765 4 655 444445666666655 467
Q ss_pred cEEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 115 DFLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 115 DfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
|.+++|+- ....++ .++.+++||.++.=-
T Consensus 95 ~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 95 HAAVVTAV---SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp EEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence 77777764 345555 446668888887743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.67 E-value=0.067 Score=41.01 Aligned_cols=99 Identities=14% Similarity=-0.044 Sum_probs=64.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc--hHHHhcCC--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ--AEEVMGEL--K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd--A~evL~~L--~ 112 (223)
...=.+||=+|+| |.+.+++.+|.+.. ..+|+.+|+++++.+.|+++ |-. |+....| ..+++... .
T Consensus 25 ~~~G~~VlV~GaG-gvGl~a~~~ak~~G--~~~Vi~~d~~~~kl~~a~~l-----Ga~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 25 VTPGSTCAVFGLG-GVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIEL-----GATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHT-----TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCEEEEECCC-chhHHHHHHHHHcC--CceeeccCChHHHHHHHHHc-----CCcEEEcCCCchhHHHHHHHHhcCC
Confidence 3444679999986 66667777766542 25899999999999999763 544 4444555 33444433 3
Q ss_pred CccEEEEeCCCcccHHHHH-HhccC-CCceEEEEeCCC
Q 027409 113 GVDFLVVDCTSKDFARVLR-FARFS-NKGAVLAFKNAF 148 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~-~~~~l-~~GgvIV~DNvl 148 (223)
.+|.||...... ..++ .+..+ +++|.++.=.+.
T Consensus 97 G~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 97 GVDYAVECAGRI---ETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp CBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECCCC
T ss_pred CCcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEEEe
Confidence 799999877543 3443 45555 556777765544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.069 Score=41.76 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=60.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHH--hc----CC-
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEV--MG----EL- 111 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~ev--L~----~L- 111 (223)
.+-.+||++|+|-|- .+-.++. ...+.++++++|..+-. .+. +.++.||-.+. .. .+
T Consensus 21 k~~~~vlDLg~aPGg--w~q~~~~-~~~~~~~v~~vDl~~~~------------~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGG--WSQYVVT-QIGGKGRIIACDLLPMD------------PIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CTTCEEEEESCTTCH--HHHHHHH-HHCTTCEEEEEESSCCC------------CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCeEEEEeccCCc--ceEEEEe-eccccceEEEeeccccc------------ccCCceEeecccccchhhhhhhhhcc
Confidence 456799999999984 3333332 23557899999998742 334 78888887431 11 11
Q ss_pred -CCccEEEEeCCCccc-------HHHHHH--------hccCCCceEEEEeC
Q 027409 112 -KGVDFLVVDCTSKDF-------ARVLRF--------ARFSNKGAVLAFKN 146 (223)
Q Consensus 112 -~~fDfVFIDa~K~~Y-------~~~f~~--------~~~l~~GgvIV~DN 146 (223)
.++|+|.-|.+..-- ...+++ .+.|++||..|+--
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 379999999874321 112221 15569999999886
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.85 E-value=0.094 Score=39.64 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=56.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfVF 118 (223)
.+||=+|+| |.+.+++.+|.+.. ..+|+.++.++++.+.+++. |-. |.....+..+++... ..+|.||
T Consensus 34 ~~vli~GaG-~vG~~~~~~a~~~g--~~~vv~~~~~~~k~~~~~~~-----ga~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 34 AYVAIVGVG-GLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERL-----GADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHT-----TCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEeCCC-hHHHHHHHHHHhhc--CcccccccchhHHHHHHhhc-----ccceeecCcccHHHHHHHhhCCCCceEEE
Confidence 678888875 44556666665432 24899999999988888754 433 332222333344433 3699877
Q ss_pred EeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 119 VDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
--+.- ...++ .+..+++||.|+.
T Consensus 106 d~~g~---~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 106 DFVGS---QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp ESSCC---HHHHHHGGGGEEEEEEEEE
T ss_pred EecCc---chHHHHHHHHHhCCCEEEE
Confidence 55542 33466 4566789998886
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.42 E-value=0.091 Score=38.58 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=48.4
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC-CCccEEEEeCCCccc--HHHHHHh
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL-KGVDFLVVDCTSKDF--ARVLRFA 133 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L-~~fDfVFIDa~K~~Y--~~~f~~~ 133 (223)
+-+|.-+|-|+......++.+++. |++++ ...++.+.|..+ .+||+||+|-.=... .+..+.+
T Consensus 7 g~rILvVDD~~~~~~~l~~~L~~~-G~~v~-~a~~g~eal~~l~~~~dlillD~~mP~~dG~el~~~i 72 (134)
T d1dcfa_ 7 GLKVLVMDENGVSRMVTKGLLVHL-GCEVT-TVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRI 72 (134)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHhhcCCCeEEEEeccCCCchHHHHHHH
Confidence 458999999999999999999998 99855 457777777655 489999999874332 3444444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.27 E-value=0.047 Score=48.02 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh
Q 027409 37 AAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV 92 (223)
Q Consensus 37 ~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a 92 (223)
.+..+-..+++||+..|+ ++++++.......++|+++|++|+.++.-++|++..
T Consensus 208 ~~l~kn~vfIDVGAniG~--~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGE--SLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp CCCCSSCEEEEETCTTSH--HHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred cCcCCCCEEEECCcCCCH--HHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 345566789999999998 677776555444579999999999999999998753
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.22 E-value=0.53 Score=35.23 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHHhcCCCCccEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~evL~~L~~fDfVF 118 (223)
+|+|-=||+ |+.+++++...+...--.+|+=+|+++++.+.-..-+.++ .+..+.+..+|-.+ +..-|+|+
T Consensus 1 ~kKI~IIGa--G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~----l~~adiVV 74 (146)
T d1hyha1 1 ARKIGIIGL--GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAA----LADADVVI 74 (146)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGG----GTTCSEEE
T ss_pred CCeEEEECc--CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHH----hccccEEE
Confidence 588999994 6778888777665554568999999999765444446654 12236667777432 35689999
Q ss_pred EeCC
Q 027409 119 VDCT 122 (223)
Q Consensus 119 IDa~ 122 (223)
|=|.
T Consensus 75 itaG 78 (146)
T d1hyha1 75 STLG 78 (146)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.20 E-value=0.021 Score=45.15 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=34.6
Q ss_pred EEEecchHHHhcCC--CCccEEEEeCC----C------cccHHHHH--------HhccCCCceEEEEeC
Q 027409 98 EVIVRQAEEVMGEL--KGVDFLVVDCT----S------KDFARVLR--------FARFSNKGAVLAFKN 146 (223)
Q Consensus 98 ~li~GdA~evL~~L--~~fDfVFIDa~----K------~~Y~~~f~--------~~~~l~~GgvIV~DN 146 (223)
+++.||++|+|+.| +.+|+||+|-- + ..|.+|++ ..+.|++||.+++.+
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 58999999999998 37999999942 1 12333332 225678888887654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.10 E-value=0.066 Score=40.47 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=59.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC---CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL---KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L---~~fDfV 117 (223)
++||=.|-+.|.+..++.+|... +++++.+..++++.+.++ +. |.. |.....|-.+.+.++ ..||.|
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~---g~~vi~~~~~~~~~~~l~----~~-Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v 98 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMI---GARIYTTAGSDAKREMLS----RL-GVEYVGDSRSVDFADEILELTDGYGVDVV 98 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHH----TT-CCSEEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CEEEEECCCCCcccccchhhccc---cccceeeecccccccccc----cc-cccccccCCccCHHHHHHHHhCCCCEEEE
Confidence 57888786556655677777553 678888888877665555 45 666 444445565666553 269998
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEE
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAF 144 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~ 144 (223)
| |+.-. +.++ .+..++++|.+|.
T Consensus 99 ~-d~~g~---~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 99 L-NSLAG---EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp E-ECCCT---HHHHHHHHTEEEEEEEEE
T ss_pred E-ecccc---hHHHHHHHHhcCCCEEEE
Confidence 8 66543 3454 4567788898887
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=92.85 E-value=0.076 Score=38.15 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=48.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
-||.-+|-|+...+..+..+++. |+++.-...++.+.+..+ .+||+|++|-.=... .+.++.++
T Consensus 2 krILivDD~~~~~~~l~~~L~~~-g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir 69 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKA-GYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIM 69 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc-CCceEEEECCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHH
Confidence 47888999999999999999998 998544557777777665 379999999875443 44555443
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=92.73 E-value=0.085 Score=38.08 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=50.6
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC---CCccEEEEeCCCccc--HHHHHHhccC-CCceEEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL---KGVDFLVVDCTSKDF--ARVLRFARFS-NKGAVLA 143 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L---~~fDfVFIDa~K~~Y--~~~f~~~~~l-~~GgvIV 143 (223)
-||.-+|-|+...+..+.+++.. |++|.. ..++.+.+..+ .+||+|++|-.=... .++++.++.. +.-.+|+
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~-g~~v~~-~~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~~~~~pii~ 80 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQL-GAEVTV-HPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 80 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEEE-ESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc-CCCeEE-ECCHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 47999999999999999999999 998553 34555544443 479999999874443 4555555533 3334444
Q ss_pred E
Q 027409 144 F 144 (223)
Q Consensus 144 ~ 144 (223)
.
T Consensus 81 l 81 (118)
T d2b4aa1 81 L 81 (118)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.68 E-value=0.11 Score=40.43 Aligned_cols=95 Identities=11% Similarity=-0.043 Sum_probs=60.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
-++||=-|.+.|++..++.||.+. ++++++.-.++++.+.+++ . |.. |. ...+..++...+ +.||.|
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~---Ga~Viat~~s~~k~~~~~~----l-Ga~~vi~-~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRV----L-GAKEVLA-REDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHH----T-TCSEEEE-CC---------CCSCCEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHc---CCceEEecCchHHHHHHHh----c-ccceeee-cchhHHHHHHHhhccCcCEE
Confidence 367999999999987888887653 7889999999998887764 3 555 33 334434555544 379965
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeCCCC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~ 149 (223)
+|.--..+ |+ .+..+++||-+|.=-...
T Consensus 103 -id~vgg~~---~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 103 -VDPVGGRT---LATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp -EECSTTTT---HHHHHHTEEEEEEEEECSCCS
T ss_pred -EEcCCchh---HHHHHHHhCCCceEEEeeccc
Confidence 56544333 43 556678889888765543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.68 E-value=0.17 Score=37.67 Aligned_cols=88 Identities=11% Similarity=-0.029 Sum_probs=55.4
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTS 123 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K 123 (223)
+|.=||+ |.-+++++.+... .+=+|+-.|++++..+.|++ . |.. .-. .+-.+ .+...|+||+-...
T Consensus 2 kI~iIG~--G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~----~-~~~-~~~-~~~~~---~~~~~DiIilavp~ 67 (165)
T d2f1ka2 2 KIGVVGL--GLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVE----R-QLV-DEA-GQDLS---LLQTAKIIFLCTPI 67 (165)
T ss_dssp EEEEECC--SHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----T-TSC-SEE-ESCGG---GGTTCSEEEECSCH
T ss_pred EEEEEee--cHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHH----h-hcc-cee-eeecc---cccccccccccCcH
Confidence 4666777 5666776655433 35579999999988777654 3 331 111 11122 33579999997766
Q ss_pred cccHHHHHHhccC-CCceEEEEeC
Q 027409 124 KDFARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 124 ~~Y~~~f~~~~~l-~~GgvIV~DN 146 (223)
+...+.++.+.+. +++.+| +|-
T Consensus 68 ~~~~~vl~~l~~~l~~~~iv-~~~ 90 (165)
T d2f1ka2 68 QLILPTLEKLIPHLSPTAIV-TDV 90 (165)
T ss_dssp HHHHHHHHHHGGGSCTTCEE-EEC
T ss_pred hhhhhhhhhhhhhcccccce-eec
Confidence 7778888877554 666655 443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.63 E-value=0.045 Score=44.30 Aligned_cols=49 Identities=2% Similarity=0.187 Sum_probs=34.1
Q ss_pred EEEEecchHHHhcCCC--CccEEEEeCC----------Cc---ccHHHH----HHh-ccCCCceEEEEe
Q 027409 97 SEVIVRQAEEVMGELK--GVDFLVVDCT----------SK---DFARVL----RFA-RFSNKGAVLAFK 145 (223)
Q Consensus 97 I~li~GdA~evL~~L~--~fDfVFIDa~----------K~---~Y~~~f----~~~-~~l~~GgvIV~D 145 (223)
=.++.||++|+|+.|. .+|+|++|-- .. +|.+.+ ..+ +.|+++|.++..
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 3799999999999994 7999999951 11 233332 222 567888887754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.31 E-value=0.052 Score=43.27 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=35.2
Q ss_pred EEEecchHHHhcCCC--CccEEEEeCC----------CcccHHHHHH-----hccCCCceEEEEe
Q 027409 98 EVIVRQAEEVMGELK--GVDFLVVDCT----------SKDFARVLRF-----ARFSNKGAVLAFK 145 (223)
Q Consensus 98 ~li~GdA~evL~~L~--~fDfVFIDa~----------K~~Y~~~f~~-----~~~l~~GgvIV~D 145 (223)
-++.||++|+|++|. .+|+||.|-- ...|.+++.. .+.|++||.++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 478899999999993 7999999962 1345554432 2667888888763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=92.05 E-value=0.2 Score=38.49 Aligned_cols=79 Identities=13% Similarity=0.017 Sum_probs=55.2
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCCCCccEEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L~~fDfVFI 119 (223)
+=|+||=.|.+.| ++..++...+ ..+++|+.++++++..+...+.+....... ..+-..|..++-..++..|++|.
T Consensus 22 ~gK~vlItGasgG-IG~~ia~~la--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 22 KGKKAVVLAGTGP-VGMRSAALLA--GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHH--hhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence 6799999998877 3566555544 347899999999999999888877641444 44444554443333568898887
Q ss_pred eCC
Q 027409 120 DCT 122 (223)
Q Consensus 120 Da~ 122 (223)
-|.
T Consensus 99 ~Ag 101 (191)
T d1luaa1 99 AGA 101 (191)
T ss_dssp CCC
T ss_pred cCc
Confidence 654
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.04 E-value=0.13 Score=36.94 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=48.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
-||.=+|-|+...+.-++.+++. |++|. ...++.+.+..+ .+||+|++|-.=... .+++..++
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr 68 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKE-MFTVD-VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMR 68 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC-CCEEE-EEcchHHHHHHHHhhCccccccccccccchhHHHHHHHH
Confidence 47888999999999999999999 99955 457777777665 489999999864333 44455554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.79 E-value=0.14 Score=39.34 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=58.5
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecc--hHHHhcCC--CCcc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQ--AEEVMGEL--KGVD 115 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~Gd--A~evL~~L--~~fD 115 (223)
=.+||=+|+| |.+-.++.+|.+.- -.+|+.+|+++++.+.|+++ |.. +.....| ..++...+ ..+|
T Consensus 29 G~~VlV~G~G-~iGl~a~~~ak~~G--a~~Vi~~d~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 29 GSTCAVFGLG-CVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKAL-----GATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHT-----TCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCEEEEECCC-hHHHHHHHHHHHhC--CceeeeeccchHHHHHHHHh-----CCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 3789999986 54456777776542 24899999999998888774 443 3322222 23333333 3799
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCc-eEEEEe
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKG-AVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~G-gvIV~D 145 (223)
.|| |+. ..+..++ .+..+++| |.++.=
T Consensus 101 ~vi-e~~--G~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 101 YSL-DCA--GTAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp EEE-ESS--CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred EEE-Eec--ccchHHHHHHHHhhcCCeEEEec
Confidence 985 553 3455565 45666664 777763
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.38 Score=42.91 Aligned_cols=124 Identities=6% Similarity=-0.042 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCC----------------CcEEEEEeCCchHHHHHHHHH
Q 027409 26 ESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHT----------------CARHVCIVPDERSRLAYVKAM 89 (223)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~----------------~g~i~TIE~d~e~~~~Ar~~~ 89 (223)
++++.+|+.-++.-....+|++-.||+|- .-+......... ...++.+|.|+..+..|+-|+
T Consensus 149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~--fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 149 PRPLIKTIIHLLKPQPREVVQDPAAGTAG--FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTH--HHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred ccchhHhhhhcccCccchhhcchhhhcch--hhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 45677777777766666699999999984 222222211111 125899999999999999998
Q ss_pred HhhcCce------EEEEecchHHH-hcCCCCccEEEEeCC-----------------CcccHHHHHH-hccCCCce---E
Q 027409 90 YDVVGWV------SEVIVRQAEEV-MGELKGVDFLVVDCT-----------------SKDFARVLRF-ARFSNKGA---V 141 (223)
Q Consensus 90 ~~a~G~~------I~li~GdA~ev-L~~L~~fDfVFIDa~-----------------K~~Y~~~f~~-~~~l~~Gg---v 141 (223)
--. |.. -.+..++.+.. ......||+|+-.-- ...+.-|++. +..|++|| +
T Consensus 227 ~l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 227 LLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp HTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred Hhh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 765 554 34555665432 223457999997631 0112235554 45667764 5
Q ss_pred EEEeCCCCCCc
Q 027409 142 LAFKNAFQRST 152 (223)
Q Consensus 142 IV~DNvl~~g~ 152 (223)
|+-+++|+++.
T Consensus 306 IlP~~~Lf~~~ 316 (524)
T d2ar0a1 306 VVPDNVLFEGG 316 (524)
T ss_dssp EEEHHHHHCCT
T ss_pred EEehHHhhhhh
Confidence 55577887653
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=91.23 E-value=0.16 Score=36.56 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=48.0
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.++|.-+|-|+...+.-+..+++. |+++. ...++.+.+..+ .+||+|++|-.-... .+++..++
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~ 70 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAGA-GLTCT-TFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIK 70 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHHT-TCEEE-EESSSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CCEEE-EeCCHHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHH
Confidence 478999999999999999999999 99854 356666665554 379999999764433 44555553
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.10 E-value=0.5 Score=37.87 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=56.0
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L~ 112 (223)
|.+|=.|.+.|. +.+++... ...+.+|+.+++|++..+.+.+.++.. |.++..+..|..+ +..+++
T Consensus 11 KvalITGas~GI-G~a~a~~l--a~~Ga~V~~~~r~~~~l~~~~~~l~~~-g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 11 KVALVTGAGRGI-GREIAKML--AKSVSHVICISRTQKSCDSVVDEIKSF-GYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp CEEEEESTTSHH-HHHHHHHH--TTTSSEEEEEESSHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCCCHH-HHHHHHHH--HHcCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 667778888773 55555544 455789999999999999999999988 8777777777642 223345
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-|.
T Consensus 87 ~iDilvnnag 96 (251)
T d2c07a1 87 NVDILVNNAG 96 (251)
T ss_dssp CCCEEEECCC
T ss_pred Cceeeeeccc
Confidence 8998887654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.98 E-value=0.47 Score=33.57 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=47.8
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhcc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARF 135 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~ 135 (223)
||.-+|-|+...+..+..+++. |++|. ...++.+.|..+ .+||+|++|-.-... .+.++.++.
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~ 68 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKE-GYEVV-TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRK 68 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhcCCCEEEeccccCCCCccHHHHHHHh
Confidence 6888999999999999999999 99954 557777777766 389999999864443 344444443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.98 E-value=0.54 Score=34.68 Aligned_cols=96 Identities=7% Similarity=-0.001 Sum_probs=59.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce----EEEEecchHHHhcCCCCcc
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV----SEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~----I~li~GdA~evL~~L~~fD 115 (223)
|+|-=||+| ..+++++..++. .|-.|+-+++++++.+..++.-... -+.. ......|..|.++ ..|
T Consensus 2 k~iaIiGaG--~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~aD 74 (184)
T d1bg6a2 2 KTYAVLGLG--NGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK---DAD 74 (184)
T ss_dssp CEEEEECCS--HHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT---TCS
T ss_pred CEEEEECcc--HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc---CCC
Confidence 566678875 444555444333 3567999999999887776542211 0111 2234456666665 699
Q ss_pred EEEEeCCCcccHHHHHHhcc-CCCceEEEEe
Q 027409 116 FLVVDCTSKDFARVLRFARF-SNKGAVLAFK 145 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~~~~~-l~~GgvIV~D 145 (223)
+||+=-...+....++.+.+ +.++.+|+.=
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence 99995555555666777765 4888887753
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.97 E-value=0.67 Score=37.04 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=53.9
Q ss_pred CeE-EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCC
Q 027409 43 KLI-VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGEL 111 (223)
Q Consensus 43 k~I-LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L 111 (223)
|+| |=-|.+.|. +.+++...+ ..|.+|+-+++|++..+...+.+++. |.++..+..|..+ +..++
T Consensus 1 KKValITGas~GI-G~aia~~la--~~Ga~V~~~~r~~~~l~~~~~~i~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 1 KKVALVTGAGQGI-GKAIALRLV--KDGFAVAIADYNDATAKAVASEINQA-GGHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp CCEEEEETTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCccHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 454 666877773 555555544 34789999999999999999999998 8777777888542 22234
Q ss_pred CCccEEEEeC
Q 027409 112 KGVDFLVVDC 121 (223)
Q Consensus 112 ~~fDfVFIDa 121 (223)
++.|.++.-|
T Consensus 77 g~iDilVnnA 86 (255)
T d1gega_ 77 GGFDVIVNNA 86 (255)
T ss_dssp TCCCEEEECC
T ss_pred CCccEEEecc
Confidence 5799888654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=90.88 E-value=1.3 Score=32.88 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc-e-EEEEecchHHHhcCCCCccEEE
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW-V-SEVIVRQAEEVMGELKGVDFLV 118 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~-~-I~li~GdA~evL~~L~~fDfVF 118 (223)
+=++|.=||+ |+.+++++++.+..+--..|+-+|+|+++.+.-..-+..+... . ..+..||-. .+..-|+|+
T Consensus 4 ~~~KI~IIGa--G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~----~~~~adivv 77 (146)
T d1ez4a1 4 NHQKVVLVGD--GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS----DCKDADLVV 77 (146)
T ss_dssp TBCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG----GGTTCSEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH----HhccccEEE
Confidence 3357888996 6677888777666543458999999998765333335543011 1 566677743 345689999
Q ss_pred EeCCC
Q 027409 119 VDCTS 123 (223)
Q Consensus 119 IDa~K 123 (223)
+=+..
T Consensus 78 itag~ 82 (146)
T d1ez4a1 78 ITAGA 82 (146)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 97643
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.81 E-value=0.14 Score=39.27 Aligned_cols=101 Identities=10% Similarity=0.072 Sum_probs=62.6
Q ss_pred CC-CeEEEE-ccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH---HhcCC--
Q 027409 41 NA-KLIVEA-WTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE---VMGEL-- 111 (223)
Q Consensus 41 ~a-k~ILEI-GT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e---vL~~L-- 111 (223)
+| +.+|=+ |.+.|.+..++.+|++. +.+++.+-.+++..+...+.+++. |.. |..-..+..+ .+.++
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~---Ga~vI~~v~~~~~~~~~~~~~~~l-Gad~vi~~~~~~~~~~~~~v~~~~~ 102 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKEL-GATQVITEDQNNSREFGPTIKEWIK 102 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHHH-TCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhc---CCeEEEEEecccccchHHhhhhhc-cccEEEeccccchhHHHHHHHHHHh
Confidence 44 578877 33334444777888764 678888877778888888888888 877 2221122111 22221
Q ss_pred ---CCccEEEEeCCCcccHHHHH-HhccCCCceEEEEeCCCC
Q 027409 112 ---KGVDFLVVDCTSKDFARVLR-FARFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 112 ---~~fDfVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~ 149 (223)
..+|+|| |+-- .+.++ .+..+++||.+|.=-.+.
T Consensus 103 ~~g~~vdvv~-D~vg---~~~~~~~~~~l~~~G~~v~~G~~~ 140 (189)
T d1gu7a2 103 QSGGEAKLAL-NCVG---GKSSTGIARKLNNNGLMLTYGGMS 140 (189)
T ss_dssp HHTCCEEEEE-ESSC---HHHHHHHHHTSCTTCEEEECCCCS
T ss_pred hccCCceEEE-ECCC---cchhhhhhhhhcCCcEEEEECCcc
Confidence 3689887 7753 33444 457789999988654443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.74 E-value=0.2 Score=38.71 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=63.4
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC--ce-EEEEecchHHHhcC------
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG--WV-SEVIVRQAEEVMGE------ 110 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G--~~-I~li~GdA~evL~~------ 110 (223)
.+-|+|-=||+ |+.+++|++..+.. |-+|+-+|+|++..+.+.+.+++.+. .. -.+...++.+.+..
T Consensus 2 ~~I~~vaViGa--G~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (186)
T d1wdka3 2 KDVKQAAVLGA--GIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 77 (186)
T ss_dssp CCCSSEEEECC--HHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCCCEEEEECc--CHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc
Confidence 35688889998 67888887655433 56799999999998888877654300 00 11112222222221
Q ss_pred ---CCCccEEEEeCCCccc---HHHHHHhccC-CCceEEEEeCC
Q 027409 111 ---LKGVDFLVVDCTSKDF---ARVLRFARFS-NKGAVLAFKNA 147 (223)
Q Consensus 111 ---L~~fDfVFIDa~K~~Y---~~~f~~~~~l-~~GgvIV~DNv 147 (223)
+..-|||+- |..+++ .+.|..+... +++.+ ++-|.
T Consensus 78 ~~~~~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~I-iaSnT 119 (186)
T d1wdka3 78 YGDFGNVDLVVE-AVVENPKVKQAVLAEVENHVREDAI-LASNT 119 (186)
T ss_dssp STTGGGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCE-EEECC
T ss_pred cccccccceeee-eecchHHHHHHHHHHHHhhcCCCee-EEecc
Confidence 235798885 888888 5567766555 55554 55554
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.67 E-value=0.15 Score=36.41 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=47.8
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
-||.-+|-|+...+.-+..+++. |++|. ...++.+.+..+ .+||+|++|-.=.+- .+++..++
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r 69 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERS-GYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLR 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHhcccccEEEecccccCCCCchhhhhhh
Confidence 37999999999999999999999 99854 456777777665 389999999864443 33444444
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.59 E-value=0.46 Score=38.51 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=55.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHH------Hh----c
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEE------VM----G 109 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~e------vL----~ 109 (223)
|.+|=-|.+.| ++.+++...+. .|.+|+-++++++..+.+++.+++. |.. +..+.+|..+ .+ .
T Consensus 5 K~alITGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~i~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 5 KSVIITGSSNG-IGRSAAVIFAK--EGAQVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 67788888877 45666655543 4789999999999999999999987 754 8888887431 12 2
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 81 ~~G~iDilVnnAG 93 (274)
T d1xhla_ 81 KFGKIDILVNNAG 93 (274)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCceEEEeecc
Confidence 2347898887653
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.58 E-value=0.21 Score=35.94 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=47.7
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
||.=+|-|+...+.-++.+++. |++|. ...++.+.+..+ ..||+|++|-.=... .+++..++
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir 68 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLS-GFEVA-TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALR 68 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHH
Confidence 7888999999999999999999 99854 456777777665 489999999863333 44555554
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.19 Score=36.13 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=44.2
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF 126 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y 126 (223)
+|.=+|-|+...+.-+..+++. |+++. ...++.+.+..+ .+||+|++|-.-...
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~dlii~D~~mp~~ 59 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAE-GYDVF-EATDGAEMHQILSEYDINLVIMDINLPGK 59 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHHHHSCCSEEEECSSCSSS
T ss_pred EEEEEECCHHHHHHHHHHHHHC-CCEEE-EECChHHHHHHHHhcCCCEEEeecccCCc
Confidence 8899999999999999999998 99844 446777766655 489999999875554
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.56 E-value=0.45 Score=38.51 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=55.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchHH------Hhc----
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAEE------VMG---- 109 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~e------vL~---- 109 (223)
|.+|=.|.+.|. +.+++...+ ..|.+|+-++++++..+.+++.+++. |.. +..+..|..+ .+.
T Consensus 6 K~alVTGas~GI-G~aia~~la--~~Ga~V~l~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 6 KTVIITGSSNGI-GRTTAILFA--QEGANVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp CEEEETTCSSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 778888888773 566655554 34789999999999999999999987 654 8888887432 222
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 82 ~~g~iDilvnnAG 94 (272)
T d1xkqa_ 82 QFGKIDVLVNNAG 94 (272)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCceEEEeCCc
Confidence 2247999987653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.51 E-value=0.27 Score=35.39 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=44.1
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH--HHhcCC--CCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE--EVMGEL--KGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~--evL~~L--~~fDfVFI 119 (223)
+|+=+|. |..+.. +|......+-.++.||.||++.+.+++. . | +.++.||+. ++|.+. +..|.++.
T Consensus 2 ~IvI~G~--G~~G~~--la~~L~~~g~~v~vid~d~~~~~~~~~~---~-~--~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGI--GRVGYT--LAKSLSEKGHDIVLIDIDKDICKKASAE---I-D--ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECC--SHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHH---C-S--SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECC--CHHHHH--HHHHHHHCCCCcceecCChhhhhhhhhh---h-h--hhhccCcccchhhhhhcChhhhhhhcc
Confidence 4666765 554444 4444433455799999999988876543 3 3 478999996 577765 57886665
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.48 E-value=0.3 Score=34.94 Aligned_cols=54 Identities=13% Similarity=-0.056 Sum_probs=41.5
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC--------CchHHHHHHHHHHhhcCce
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP--------DERSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~--------d~e~~~~Ar~~~~~a~G~~ 96 (223)
.+..|++|+=||. || .++-+|.+....+.+||=+|+ |++..+.+++.+++. |+.
T Consensus 18 ~l~~p~~v~IiGg--G~--iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-gV~ 79 (117)
T d1onfa2 18 NIKESKKIGIVGS--GY--IAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKN-NIN 79 (117)
T ss_dssp TCCCCSEEEEECC--SH--HHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT-TCE
T ss_pred ccCCCCEEEEECC--ch--HHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhC-CCE
Confidence 4567999999998 46 555566555556788999997 677788888889988 775
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.79 Score=32.24 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=51.0
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhccCCCceEEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARFSNKGAVLA 143 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~l~~GgvIV 143 (223)
.||.=+|-|+...+.-+..+++. |+++. ...++.+.+..+ ..||+|++|..=..- .+.++.++..++-.+|+
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~a~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~~~~~piI~ 77 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQE-GYTVS-VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIIL 77 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhcCCCEEeeehhhccchhHHHHHHHhccCCCeEEE
Confidence 37889999999999999999999 99854 456777766655 479999999863332 33444444444444444
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=90.28 E-value=0.21 Score=36.70 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=49.5
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
+||.-+|-|+...+.-+..+++. |++|. ...++.+.+..+ ..||+|++|..-... .+....++
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir 68 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAE-YYEVS-TAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLK 68 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CCEEE-EEccchhhhhhhhcccceeeeeeccccCCCchHHHHHhh
Confidence 68999999999999999999999 99854 567887777765 379999999865544 34445554
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=90.27 E-value=0.17 Score=36.14 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=46.7
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
||.-+|-|+...+..++.+++. |+++. ...++.+.+..+ .+||+|++|-.=..- .++.+.++
T Consensus 3 rILiVDD~~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ir 68 (123)
T d1mb3a_ 3 KVLIVEDNELNMKLFHDLLEAQ-GYETL-QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLK 68 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhCCCCEEEEEeccCCCcHHHHHHHHH
Confidence 7889999999999999999999 99843 457777777655 379999999863332 34444443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.26 E-value=0.68 Score=37.17 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH------HHh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE------EVM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~------evL----~~ 110 (223)
+=|.+|=-|.+.|. +.+++...+ ..|.+|+-+++|++..+.+.+.++.. |.++..+..|.. +.+ .+
T Consensus 4 ~gK~alITGas~GI-G~aia~~la--~~Ga~V~~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 4 NGKVCLVTGAGGNI-GLATALRLA--EEGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34778888888773 555555544 34789999999999999999999988 877777777753 122 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++..|.++.-|.
T Consensus 80 ~g~iDilVnnaG 91 (260)
T d1zema1 80 FGKIDFLFNNAG 91 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCeehhhhc
Confidence 357898887754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.06 E-value=0.16 Score=38.56 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=59.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHH-hcCC--CCcc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEV-MGEL--KGVD 115 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~ev-L~~L--~~fD 115 (223)
.=++||=.|.+.|.+..++.+|+. .+++++.+..++++.+.+++ . |.. |.....+..+. +... ..+|
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~---~Ga~vi~~~~~~~~~~~~~~----~-Ga~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKIAYLKQ----I-GFDAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----T-TCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHc---cCCEEEEeCCCHHHHHHHHh----h-hhhhhcccccccHHHHHHHHhhcCCCc
Confidence 347899889888776566666653 37899999998887655544 4 655 33333333443 3332 3699
Q ss_pred EEEEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 116 FLVVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 116 fVFIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
+|| |+-- .++++ .+..+++||.++.--
T Consensus 101 ~v~-D~vG---~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 101 CYF-DNVG---GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEE-ESSC---HHHHHHHGGGEEEEEEEEECC
T ss_pred eeE-EecC---chhhhhhhhhccCCCeEEeec
Confidence 965 6653 34565 456678889888643
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=89.88 E-value=0.24 Score=36.19 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~ 134 (223)
+|.=+|-|+...+..+..++.. |+.|. ...++.+.+..+ ..||+|++|-.-.. =.+++..++
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr 67 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMK-GIKVE-SAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIK 67 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHH-TCEEE-EESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHH
Confidence 5777999999999999999999 99955 457777777655 47999999975333 245555554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.53 E-value=0.24 Score=39.24 Aligned_cols=110 Identities=11% Similarity=-0.056 Sum_probs=65.9
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--e----EEEEecchHH------
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--V----SEVIVRQAEE------ 106 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~----I~li~GdA~e------ 106 (223)
..+|.+||=||.++- +..+++.|.. -+++|+-+|.+++..+..++.+.++.-+ . .+--.|.|.+
T Consensus 26 ~V~pa~VvViGaGva-G~~Aa~~A~~---lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~ 101 (183)
T d1l7da1 26 TVPPARVLVFGVGVA-GLQAIATAKR---LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFR 101 (183)
T ss_dssp EECCCEEEEECCSHH-HHHHHHHHHH---TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------
T ss_pred CcCCcEEEEEcCcHH-HHHHHHHHHH---cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHH
Confidence 467999999999853 2355555443 3789999999999999888876655110 0 1112233322
Q ss_pred -----Hh-cCCCCccEEEEeCCC--cccHHHH--HHhccCCCceEEEEeCCCCCCc
Q 027409 107 -----VM-GELKGVDFLVVDCTS--KDFARVL--RFARFSNKGAVLAFKNAFQRST 152 (223)
Q Consensus 107 -----vL-~~L~~fDfVFIDa~K--~~Y~~~f--~~~~~l~~GgvIV~DNvl~~g~ 152 (223)
.| +.+..-|+|.-=+-- ..-+.+. +.+..++||+|||.=.+=++|.
T Consensus 102 ~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn 157 (183)
T d1l7da1 102 KKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN 157 (183)
T ss_dssp CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence 12 224578998766531 2233344 3567789999988666656664
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=89.40 E-value=0.28 Score=34.99 Aligned_cols=62 Identities=21% Similarity=0.128 Sum_probs=47.1
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
||.=+|-|+...+..+..++.. |++|. ...++.+.+..+ ..||+|++|-.=... .++++.++
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~-G~~v~-~a~~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~ 67 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDA-GHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR 67 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHhcccceeehhccCCCchhHHHHHHHH
Confidence 6788999999999999999998 99844 456777766655 479999999873333 45555553
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=0.61 Score=37.46 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=56.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--H--------hcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--V--------MGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--v--------L~~ 110 (223)
+=|.+|=-|.+.|. +.+++...+ ..|++|+-++++++..+.+.+.+++. |-++..+..|..+ . ..+
T Consensus 10 ~gK~alITGas~GI-G~aia~~la--~~Ga~V~~~~r~~~~~~~~~~~l~~~-g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 10 DGKCAIITGAGAGI-GKEIAITFA--TAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHH--TTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34788888888774 566555544 45789999999999999999999998 8777777787642 1 222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|+++.-|.
T Consensus 86 ~g~iDilvnnAG 97 (255)
T d1fmca_ 86 LGKVDILVNNAG 97 (255)
T ss_dssp HSSCCEEEECCC
T ss_pred cCCCCEeeeCCc
Confidence 357998877653
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=89.27 E-value=0.23 Score=35.48 Aligned_cols=63 Identities=8% Similarity=0.170 Sum_probs=48.1
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhcc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARF 135 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~ 135 (223)
||.-+|-|+...+..++.+++. |+++. ...++.+.+..+ ..||+|++|-.=... .++++.++.
T Consensus 3 rILvVDD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~ 69 (119)
T d1peya_ 3 KILIVDDQSGIRILLNEVFNKE-GYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 69 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHH
Confidence 7889999999999999999999 99844 456777766655 379999999874433 455555543
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=89.10 E-value=0.4 Score=34.09 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=46.3
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHh
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFA 133 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~ 133 (223)
||.=+|-|+...+..+..+++. |+++. ...++.+.+..+ .+||+|++|-.=.. =.++.+.+
T Consensus 2 kILiVDD~~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~l 66 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQN-GFQPV-EAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHL 66 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEE-EECSHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-CCEEE-EECChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHH
Confidence 6788999999999999999999 99844 356777766655 37999999976333 34455555
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.02 E-value=1.1 Score=35.64 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=53.9
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L~ 112 (223)
|-+|=-|.+.|. +.+++.+.| ..|.+|+-++++++..+.+.+.+++. |.++..+..|..+ ++.+++
T Consensus 3 KValITGas~GI-G~aia~~la--~~Ga~V~i~~r~~~~l~~~~~~l~~~-g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 3 EVALVTGATSGI-GLEIARRLG--KEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CEEEEESCSSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 344666777773 566665554 34789999999999999999999988 8777777777531 222335
Q ss_pred CccEEEEeCC
Q 027409 113 GVDFLVVDCT 122 (223)
Q Consensus 113 ~fDfVFIDa~ 122 (223)
+.|.++.-|.
T Consensus 79 ~iDilVnnAG 88 (257)
T d2rhca1 79 PVDVLVNNAG 88 (257)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEeccc
Confidence 7998886553
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.01 E-value=3.1 Score=30.65 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEE
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFI 119 (223)
|.+|-=||+ |..+++++++.+..+---.|+-+|+++++.+.-..-++.+.... .++..++-.+.+. .-|+|+|
T Consensus 1 p~Ki~IIGa--G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~---daDvVVi 75 (143)
T d1llda1 1 PTKLAVIGA--GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICR---DADMVVI 75 (143)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGT---TCSEEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhh---CCcEEEE
Confidence 678888995 66678888777766555689999999987643333366541122 5665554455444 5799999
Q ss_pred eCCCcc
Q 027409 120 DCTSKD 125 (223)
Q Consensus 120 Da~K~~ 125 (223)
-|...+
T Consensus 76 taG~~~ 81 (143)
T d1llda1 76 TAGPRQ 81 (143)
T ss_dssp CCCCCC
T ss_pred eccccc
Confidence 886543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.97 E-value=0.46 Score=35.52 Aligned_cols=94 Identities=15% Similarity=-0.032 Sum_probs=54.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEec-ch-HHHhcCC--CCccEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVR-QA-EEVMGEL--KGVDFLV 118 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~G-dA-~evL~~L--~~fDfVF 118 (223)
..||=+|.+ |...+++.++.+. ...+|+.++.++++.+.|+++-... .|..... |. .+++... ..+|.+|
T Consensus 30 dtVlV~GaG-G~G~~~~~~~~~~--g~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 30 STCAVFGLG-GVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CEEEEECCC-CcHHHHHHHHHHc--CCceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 579999996 5455665555432 2469999999999999887764322 0221111 22 2333333 3799877
Q ss_pred EeCCCcccHHHHH-HhccC-CCceEEEEe
Q 027409 119 VDCTSKDFARVLR-FARFS-NKGAVLAFK 145 (223)
Q Consensus 119 IDa~K~~Y~~~f~-~~~~l-~~GgvIV~D 145 (223)
-..... ..++ .+..+ +.||+++.=
T Consensus 104 d~~G~~---~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 104 EVIGRL---DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp ECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred ecCCch---hHHHHHHHHHhcCCcceEEe
Confidence 765433 3344 34444 334565543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.87 E-value=0.29 Score=37.36 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=62.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecc-hHHHhcCC--CCccEEEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQ-AEEVMGEL--KGVDFLVV 119 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~Gd-A~evL~~L--~~fDfVFI 119 (223)
..||=-|.+.|++..++.||++. +++++.+-.++++.+.+++ . |...-+-..| ..+.+... +.+|.||-
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~---Ga~Viat~~s~~k~~~~~~----l-Gad~vi~~~~~~~~~~~~~~~~gvd~vid 96 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKR---GYDVVASTGNREAADYLKQ----L-GASEVISREDVYDGTLKALSKQQWQGAVD 96 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHH---TCCEEEEESSSSTHHHHHH----H-TCSEEEEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHHHHc---CCceEEEecCHHHHHHHHh----h-cccceEeccchhchhhhcccCCCceEEEe
Confidence 36998898889887888888764 6899999999988777654 4 6651121111 12233333 36998764
Q ss_pred eCCCcccHHHHH-HhccCCCceEEEEeCCCCCC
Q 027409 120 DCTSKDFARVLR-FARFSNKGAVLAFKNAFQRS 151 (223)
Q Consensus 120 Da~K~~Y~~~f~-~~~~l~~GgvIV~DNvl~~g 151 (223)
--.-+ .|+ .+..+++||.||+=-...+.
T Consensus 97 ~vgg~----~~~~~~~~l~~~G~iv~~G~~~g~ 125 (167)
T d1tt7a2 97 PVGGK----QLASLLSKIQYGGSVAVSGLTGGG 125 (167)
T ss_dssp SCCTH----HHHHHHTTEEEEEEEEECCCSSCS
T ss_pred cCcHH----HHHHHHHHhccCceEEEeeccCCC
Confidence 44332 444 45667889999886655544
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.81 E-value=0.32 Score=37.16 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=61.7
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCc-EEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCC--CCccEE
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCA-RHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGEL--KGVDFL 117 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g-~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L--~~fDfV 117 (223)
+.||=.|.+.|.+..++.+|+.. ++ +|+++...++...... +.. |.. |+....+..+.+.++ +.+|+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~---Ga~~vi~~~~~~e~~~~l~---~~~-gad~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLL---GCSRVVGICGTQEKCLFLT---SEL-GFDAAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHT---TCSEEEEEESSHHHHHHHH---HHS-CCSEEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHc---CCcceecccchHHHHhhhh---hcc-cceEEeeccchhHHHHHHHHhccCceEE
Confidence 56999887667766777887653 43 5777776655433322 233 555 777777888888775 369998
Q ss_pred EEeCCCcccHHHHH-HhccCCCceEEEEeC
Q 027409 118 VVDCTSKDFARVLR-FARFSNKGAVLAFKN 146 (223)
Q Consensus 118 FIDa~K~~Y~~~f~-~~~~l~~GgvIV~DN 146 (223)
| |+--. +.++ .+..+++||.++.=-
T Consensus 105 ~-D~vGg---~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 105 F-DNVGG---DISNTVISQMNENSHIILCG 130 (187)
T ss_dssp E-ESSCH---HHHHHHHTTEEEEEEEEEC-
T ss_pred E-ecCCc---hhHHHHhhhccccccEEEec
Confidence 5 87643 4565 456779999888643
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.38 Score=34.95 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=48.1
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
+-+|.-+|-|+...+.-++.++.. |+.|. ...++.+.+.-+ .+||+||+|-.=... .++++.++
T Consensus 8 ~~~ILiVDD~~~~~~~l~~~L~~~-g~~v~-~a~~g~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir 75 (133)
T d2ayxa1 8 DMMILVVDDHPINRRLLADQLGSL-GYQCK-TANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIR 75 (133)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH-TSEEE-EECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-CCEEE-EECcHHHHHHHHhccCceEEEEeccCCCCCHHHHHHHHH
Confidence 468999999999999999999999 99854 356666665544 489999999864333 44555553
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=88.72 E-value=0.36 Score=42.09 Aligned_cols=122 Identities=8% Similarity=-0.002 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEE-EeCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVC-IVPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~T-IE~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|=..|+++-++...+=..+ |-++.+..+. +...+|.+|++ -+.........+..+++. |+.+++...
T Consensus 56 ~~nPT~~~LE~~la~LEg~~~a~~~~S--GmaAi~~~l~-~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~-Gi~~~~~d~ 131 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEGGEAGLALAS--GMGAITSTLW-TLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHVDM 131 (392)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESS--HHHHHHHHHH-HHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEEEECT
T ss_pred CCChHHHHHHHHHHHHhCCcceeehhh--HHHHHHHHHH-hhccCCCeeecccccchhhhhhhhhhhccC-CcccccCCc
Confidence 668889999999999999999887655 4432332222 33455656555 556777778888888888 999888765
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHHHH--HHh-ccC-CCceEEEEeCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFARVL--RFA-RFS-NKGAVLAFKNAFQ 149 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~~f--~~~-~~l-~~GgvIV~DNvl~ 149 (223)
.-.+.+.+ + ++-++||+-.-..-..+.. +.+ ... +.|.++|+||.|.
T Consensus 132 ~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~a 184 (392)
T d1gc0a_ 132 ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYC 184 (392)
T ss_dssp TCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTT
T ss_pred cCHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCcc
Confidence 43444443 4 3689999997544443333 333 232 7899999999875
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=88.59 E-value=0.41 Score=34.30 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=48.3
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhcc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARF 135 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~ 135 (223)
+|.=||-|+...+.-+..++.. |+.|. ...++.+.|..+ .+||+|++|-.=... .++++.++.
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~ 70 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSA-GFEVE-TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTA 70 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHc-CCCcc-ccccHHHHHHHHHhcCCCEeehhhhcccchhHHHHHHHHh
Confidence 7999999999999999999999 99854 445788877766 379999999863332 445555543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.48 E-value=1 Score=36.00 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=54.1
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCceEEEEecchHH----------HhcC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~I~li~GdA~e----------vL~~ 110 (223)
=|.+|=-|.+.|. +.+++...+. .|.+|+-++++++..+.+.+.+. +. |.++..+..|..+ +..+
T Consensus 5 gK~~lITGas~GI-G~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 5 GRVALVTGGSRGL-GFGIAQGLAE--AGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3788888988884 5666665543 47899999999998888777664 55 7667777787531 1222
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
++++|.++.-|.
T Consensus 81 ~g~iDiLVnnAG 92 (251)
T d1vl8a_ 81 FGKLDTVVNAAG 92 (251)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 357999987653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.16 E-value=0.47 Score=38.16 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHH------Hh----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEE------VM---- 108 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~e------vL---- 108 (223)
+=|.+|=.|.+.|. +.+++...+ ..|.+|+-.++|++.++.+.+-+++. |.. +..+..|..+ .+
T Consensus 9 k~Kv~lITGas~GI-G~aiA~~la--~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 9 RDRLALVTGASGGI-GAAVARALV--QQGLKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999884 566655544 45789999999999999999999988 764 6666676532 22
Q ss_pred cCCCCccEEEEeCCC
Q 027409 109 GELKGVDFLVVDCTS 123 (223)
Q Consensus 109 ~~L~~fDfVFIDa~K 123 (223)
.+++.+|.++.-|.-
T Consensus 85 ~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 85 SQHSGVDICINNAGL 99 (257)
T ss_dssp HHHCCCSEEEECCCC
T ss_pred HhcCCCCEEEecccc
Confidence 223579988877643
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.64 E-value=0.51 Score=33.21 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=38.3
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCC--------chHHHHHHHHHHhhcCce
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPD--------ERSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d--------~e~~~~Ar~~~~~a~G~~ 96 (223)
.-.-|++++=||. || .++-+|.+...-+.+||-+|.. ++..+..++.+++. |+.
T Consensus 17 ~~~~p~~vvIiGg--G~--~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~-gV~ 78 (115)
T d1lvla2 17 PKALPQHLVVVGG--GY--IGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKL-GIA 78 (115)
T ss_dssp CSSCCSEEEEECC--SH--HHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHH-TCE
T ss_pred cccCCCeEEEECC--CH--HHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhh-cce
Confidence 3457899999988 46 5555555554446788888875 44667778888888 775
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=87.52 E-value=0.8 Score=33.36 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=48.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhcc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARF 135 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~ 135 (223)
+|.-+|-|+...+.-+..++.. |+.+.. ..++.+.+..+ ..||+|++|-.=..- .++++.++-
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~-g~~v~~-~~~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~ 68 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELA-GFTVSS-FASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILA 68 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEEE-ESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHC-CCEEEE-eCChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHH
Confidence 5778999999999999999999 998543 37888888877 379999999764432 456665543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.44 E-value=2.5 Score=30.70 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=48.0
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEE-ecchHHHhcCCCCccEEEE
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVI-VRQAEEVMGELKGVDFLVV 119 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li-~GdA~evL~~L~~fDfVFI 119 (223)
+|.=||. |..+++++++.+..+.-..|+-+|+++++.+.....+.++ .+...++. .+| .+.+ ...|+|+|
T Consensus 2 KI~IIGa--G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~---~dadvvvi 75 (142)
T d1guza1 2 KITVIGA--GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADT---ANSDIVII 75 (142)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGG---TTCSEEEE
T ss_pred EEEEECc--CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHh---cCCeEEEE
Confidence 3556784 5667888777776655568999999999876655555443 12335554 344 3333 46899999
Q ss_pred eCC
Q 027409 120 DCT 122 (223)
Q Consensus 120 Da~ 122 (223)
-+.
T Consensus 76 tag 78 (142)
T d1guza1 76 TAG 78 (142)
T ss_dssp CCS
T ss_pred EEe
Confidence 985
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.25 E-value=0.67 Score=37.69 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=52.8
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc----hHHHHHHHHHHhhcCce-EEEEecchHHHhcC--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE----RSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGE--L 111 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~----e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~--L 111 (223)
..+||+||=.|.. ||.||.|...+. ..|=+|+.+|... +.....+...... ... ++++.||..+.... .
T Consensus 13 ~~~~k~iLVTG~t-GfIGs~lv~~L~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~d~~~~~~~ 88 (341)
T d1sb8a_ 13 PAQPKVWLITGVA-GFIGSNLLETLL--KLDQKVVGLDNFATGHQRNLDEVRSLVSEK-QWSNFKFIQGDIRNLDDCNNA 88 (341)
T ss_dssp HHSCCEEEEETTT-SHHHHHHHHHHH--HTTCEEEEEECCSSCCHHHHHHHHHHSCHH-HHTTEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEecCC-CHHHHHHHHHHH--HCcCEEEEEECCCCcchhhHHHHHHhhhhc-ccCCeeEEeeccccccccccc
Confidence 3589999999875 998887765443 3355899998632 2333333333333 233 89999999775432 1
Q ss_pred -CCccEEEEeCCCcc
Q 027409 112 -KGVDFLVVDCTSKD 125 (223)
Q Consensus 112 -~~fDfVFIDa~K~~ 125 (223)
...|.|+.-++-..
T Consensus 89 ~~~~~~v~~~~a~~~ 103 (341)
T d1sb8a_ 89 CAGVDYVLHQAALGS 103 (341)
T ss_dssp HTTCSEEEECCSCCC
T ss_pred ccccccccccccccc
Confidence 36788877766544
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=87.03 E-value=1.7 Score=30.70 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=50.0
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhccC
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARFS 136 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~l 136 (223)
+-+|.=+|-|+...+.-+..+++. |+.|. ...++.+.+..+ .+||+|++|-.=.. =.++++.++-.
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~ 72 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTMN-GFAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL 72 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHT-TCEEE-EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhc
Confidence 358889999999999999999999 99864 456777776655 37999999986333 25566666543
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.66 E-value=0.4 Score=34.68 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=44.0
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCce-EEEEecc---hHHHhcCC----CCccEEEEeCCCccc--HHHHHHh
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQ---AEEVMGEL----KGVDFLVVDCTSKDF--ARVLRFA 133 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~Gd---A~evL~~L----~~fDfVFIDa~K~~Y--~~~f~~~ 133 (223)
||.-+|-|+...+..+..+++. |+. |+.- .| |++.+.+. ++||+||+|-.=... .+..+.+
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~~-g~~~v~~a-~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~i 73 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNLE-GIENIELA-CDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMI 73 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-TCCCEEEE-SSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHc-CCeEEEEE-cChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHH
Confidence 5788999999999999999998 997 7754 44 44544432 479999999864443 3344444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.47 E-value=1.6 Score=34.86 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=53.1
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCc--eEEEEecchHH--H----h----cC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGW--VSEVIVRQAEE--V----M----GE 110 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~--~I~li~GdA~e--v----L----~~ 110 (223)
|.+|=-|.+.|. +.+++...+. .|.+|+-++++++..+.+.+.+... +. ++..+..|..+ . + .+
T Consensus 5 K~alITGas~GI-G~aia~~la~--~Ga~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 5 RVVLITGGGSGL-GRATAVRLAA--EGAKLSLVDVSSEGLEASKAAVLET-APDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CEEEEETTTSHH-HHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHH-CTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHH-HHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhh-CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 678888988773 5666655543 4789999999999999988888765 43 37777777421 1 2 22
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 357898887653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=0.24 Score=36.22 Aligned_cols=91 Identities=7% Similarity=-0.033 Sum_probs=52.6
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|+=||+| ..++.++-.++. .+-.|+.++++++..+.... ... +.. ...+..+..+.+. .+|+||+=.
T Consensus 2 kI~IiGaG--~iG~~~a~~L~~--~G~~V~~~~r~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~---~~D~iii~v 71 (167)
T d1ks9a2 2 KITVLGCG--ALGQLWLTALCK--QGHEVQGWLRVPQPYCSVNL--VET-DGSIFNESLTANDPDFLA---TSDLLLVTL 71 (167)
T ss_dssp EEEEECCS--HHHHHHHHHHHH--TTCEEEEECSSCCSEEEEEE--ECT-TSCEEEEEEEESCHHHHH---TCSEEEECS
T ss_pred EEEEECcC--HHHHHHHHHHHH--CCCceEEEEcCHHHhhhhcc--ccC-Cccccccccccchhhhhc---ccceEEEee
Confidence 57788885 445555433332 24579999998874432111 011 111 2333344344333 699999988
Q ss_pred CCcccHHHHHHhccC-CCceEEEE
Q 027409 122 TSKDFARVLRFARFS-NKGAVLAF 144 (223)
Q Consensus 122 ~K~~Y~~~f~~~~~l-~~GgvIV~ 144 (223)
...+-...++.+.++ +++.+|+.
T Consensus 72 ka~~~~~~~~~l~~~~~~~~~Iv~ 95 (167)
T d1ks9a2 72 KAWQVSDAVKSLASTLPVTTPILL 95 (167)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred cccchHHHHHhhccccCcccEEee
Confidence 777777788877654 66665554
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.43 Score=33.86 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=47.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhccC
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFARFS 136 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~~l 136 (223)
.|.=+|-|+...+.-++.+++. |++|. ...++.+.+..+ .+||+|++|-.=.+. .+++..++..
T Consensus 2 nILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~ 69 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEGD-GMRVF-EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW 69 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-TCEEE-EESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHHHHC-CCEEE-EeCCHHHHHHHHHhcCCCEEEeccccCCCCCchHHHHHHhc
Confidence 3677999999999999999998 99844 456777777665 379999999864433 4455555433
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=2.4 Score=33.61 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=57.5
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH------H----hcCCC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE------V----MGELK 112 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e------v----L~~L~ 112 (223)
|.+|=-|.+.|. +.+++...+ ..|.+|+-.+++++..+...+.++.. |-.+..+..|-.+ . ..+++
T Consensus 8 kv~lITGas~GI-G~~ia~~la--~~G~~V~l~~r~~~~l~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 8 EIVLITGAGHGI-GRLTAYEFA--KLKSKLVLWDINKHGLEETAAKCKGL-GAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp CEEEEETTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCcHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 677888998884 566666554 34789999999999999999999887 7667777777532 1 12345
Q ss_pred CccEEEEeCCCcc
Q 027409 113 GVDFLVVDCTSKD 125 (223)
Q Consensus 113 ~fDfVFIDa~K~~ 125 (223)
..|+++.-|.-..
T Consensus 84 ~idilinnag~~~ 96 (244)
T d1yb1a_ 84 DVSILVNNAGVVY 96 (244)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCceeEeeccccc
Confidence 7999887765443
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=85.85 E-value=0.68 Score=32.87 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=46.6
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCCccc--HHHHHHhcc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTSKDF--ARVLRFARF 135 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K~~Y--~~~f~~~~~ 135 (223)
+|.-+|-|+...+.-+..+++. |. +. ...++.+.|....+||+|++|-.=..- .+++..++.
T Consensus 4 kILiVDDd~~~~~~l~~~L~~~-g~-v~-~~~~~~~al~~~~~~dlillD~~mP~~~G~~~~~~lr~ 67 (120)
T d1p2fa2 4 KIAVVDDDKNILKKVSEKLQQL-GR-VK-TFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKE 67 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT-EE-EE-EESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhC-CE-EE-EECCHHHHHhcCCCCCEEEEeCcccccchhHHHHHHhh
Confidence 7888999999999999999998 85 33 356888888776789999999863332 344454543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.50 E-value=1.6 Score=34.92 Aligned_cols=61 Identities=15% Similarity=-0.019 Sum_probs=47.9
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE 105 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~ 105 (223)
+=|.+|=.|.+.|. +.+++...+ ..+.+|+-++++++..+.+.+.+.+. |..+.++..|..
T Consensus 5 ~gK~alITGas~GI-G~aia~~la--~~G~~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~D~s 65 (258)
T d1ae1a_ 5 KGTTALVTGGSKGI-GYAIVEELA--GLGARVYTCSRNEKELDECLEIWREK-GLNVEGSVCDLL 65 (258)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEeecC
Confidence 44789999999884 566665544 34789999999999999999999988 877777767653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.99 E-value=2.8 Score=30.86 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=53.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCceEEEEecchHHHhcCCCCcc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWVSEVIVRQAEEVMGELKGVD 115 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~I~li~GdA~evL~~L~~fD 115 (223)
..+.++|-=||+ |..+++++++.+..+--.+|+-+|+++++.+.-..-+..+ .+..+.+..+|- ..+..-|
T Consensus 3 ~~~~~KI~IiGa--G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daD 76 (148)
T d1ldna1 3 NNGGARVVVIGA--GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDAD 76 (148)
T ss_dssp TTTSCEEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCS
T ss_pred CCCCCeEEEECc--CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccce
Confidence 346778999995 5667888777766555568999999998866555456654 122266777774 3345679
Q ss_pred EEEEeCC
Q 027409 116 FLVVDCT 122 (223)
Q Consensus 116 fVFIDa~ 122 (223)
+|++=+.
T Consensus 77 vvvitag 83 (148)
T d1ldna1 77 LVVICAG 83 (148)
T ss_dssp EEEECCS
T ss_pred eEEEecc
Confidence 9998543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=1 Score=34.71 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=61.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhc------CceEEE--EecchHHHhcCC--
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVV------GWVSEV--IVRQAEEVMGEL-- 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~------G~~I~l--i~GdA~evL~~L-- 111 (223)
-|+|-=||+ |+.|++|+...|. .|-.|+-.|+|++..+.|++.+++.+ |..-.. -..+..+.+.++
T Consensus 4 IkkvaViGa--G~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 79 (192)
T d1f0ya2 4 VKHVTVIGG--GLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 79 (192)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred eEEEEEECc--CHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc
Confidence 478999999 5688888776654 36689999999999999988876540 110000 000111222222
Q ss_pred --------CCccEEEEeCCCccc---HHHHHHhccC-CCceEEEEeC
Q 027409 112 --------KGVDFLVVDCTSKDF---ARVLRFARFS-NKGAVLAFKN 146 (223)
Q Consensus 112 --------~~fDfVFIDa~K~~Y---~~~f~~~~~l-~~GgvIV~DN 146 (223)
..-|| .|.|-.++. .+.|..+... +++.++..+-
T Consensus 80 ~~d~~~a~~~ad~-ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT 125 (192)
T d1f0ya2 80 STDAASVVHSTDL-VVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 125 (192)
T ss_dssp ESCHHHHTTSCSE-EEECCCSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred cchhHhhhcccce-ehhhcccchhHHHHHHHHHhhhcccCceeeccC
Confidence 24677 567877776 5677766554 6665554443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.57 E-value=1.9 Score=34.35 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=57.0
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH----------HHhcC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE----------EVMGE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~----------evL~~ 110 (223)
+=|.+|=-|.+.|. +.+++...+ ..+.+|+-+++|++..+.+.+.+... |..+.++..|.. ++..+
T Consensus 7 ~GK~alITGas~GI-G~aia~~la--~~Ga~V~~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 7 EGCTALVTGGSRGI-GYGIVEELA--SLGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 34788888988773 566655554 34789999999999999999999988 877777777753 12233
Q ss_pred CC-CccEEEEeCC
Q 027409 111 LK-GVDFLVVDCT 122 (223)
Q Consensus 111 L~-~fDfVFIDa~ 122 (223)
+. +.|.++.-|.
T Consensus 83 ~~~~idilvnnAG 95 (259)
T d2ae2a_ 83 FHGKLNILVNNAG 95 (259)
T ss_dssp TTTCCCEEEECCC
T ss_pred hCCCceEEEECCc
Confidence 44 6899887654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.53 E-value=1.1 Score=33.05 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=59.3
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEe--cchHHHhcCC--C
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIV--RQAEEVMGEL--K 112 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~--GdA~evL~~L--~ 112 (223)
...=.+||=+|++ |.+.+++.+|.+.. ..+|++++.++++.+.|+++ |.. |.... .++.+++... .
T Consensus 26 ~~~G~tVlI~GaG-GvG~~aiq~ak~~G--~~~vi~~~~~~~k~~~ak~l-----Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 26 LEPGSVCAVFGLG-GVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEF-----GATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHH-----TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCCEEEEecch-hHHHHHHHHHHHHh--cCceEEEcccHHHHHHHHHh-----CCcEEEeCCchhhHHHHHHHHHcCC
Confidence 3444678888986 77777777776642 35899999999998888753 544 33322 3344555543 3
Q ss_pred CccEEEEeCCCcccHHHHHH-hccCCCceEEEE
Q 027409 113 GVDFLVVDCTSKDFARVLRF-ARFSNKGAVLAF 144 (223)
Q Consensus 113 ~fDfVFIDa~K~~Y~~~f~~-~~~l~~GgvIV~ 144 (223)
.+|.||--.. -...++. ...+++|+.++.
T Consensus 98 g~D~vid~~G---~~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 98 GVDYSFECIG---NVKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp CBSEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred CCcEeeecCC---CHHHHHHHHHhhcCCceeEE
Confidence 7998875443 2345553 455566655543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=84.45 E-value=1.2 Score=36.88 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHhhcccCCCCcHHHHHHHHHHHHhc--CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHH
Q 027409 12 KAYIDTVKSCENIKESGVAELLSAMAAGW--NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAM 89 (223)
Q Consensus 12 ~ayl~~l~~~~~ii~p~~g~fL~~L~~~~--~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~ 89 (223)
+.++..-......++..+-.+..+.-+.. .--+||++|||-|. .+ +.| +...+...+..+++--...+ .....
T Consensus 35 ~~~~~~~~~~~~~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGg--ws-~~~-a~~~~v~~V~g~~iG~d~~e-~P~~~ 109 (257)
T d2p41a1 35 KEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGG--WS-YYC-GGLKNVREVKGLTKGGPGHE-EPIPM 109 (257)
T ss_dssp HHHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSH--HH-HHH-HTSTTEEEEEEECCCSTTSC-CCCCC
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHhcCccCCCeEEEecCCCCh--HH-HHH-HhhcCCCceeEEEecCcccc-CCccc
Confidence 44555444333477888887777665543 34479999999995 33 333 22333456666666222111 01112
Q ss_pred HhhcCce-EEEEecchHHHhcCCCCccEEEEeCCC---------cccHHHHHHh-ccCCCceEEEEeCCCC
Q 027409 90 YDVVGWV-SEVIVRQAEEVMGELKGVDFLVVDCTS---------KDFARVLRFA-RFSNKGAVLAFKNAFQ 149 (223)
Q Consensus 90 ~~a~G~~-I~li~GdA~evL~~L~~fDfVFIDa~K---------~~Y~~~f~~~-~~l~~GgvIV~DNvl~ 149 (223)
+.. +.. +++..++....++. .+.|.|+.|... ..-.+.++++ +-|++||-.++ =||.
T Consensus 110 ~~~-~~ni~~~~~~~dv~~l~~-~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv-KVl~ 177 (257)
T d2p41a1 110 STY-GWNLVRLQSGVDVFFIPP-ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV-KVLN 177 (257)
T ss_dssp CST-TGGGEEEECSCCTTTSCC-CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE-EESC
T ss_pred ccc-ccccccchhhhhHHhcCC-CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE-EECC
Confidence 333 555 89988887544432 379999999864 2334566655 45788887777 4554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.43 E-value=1.5 Score=30.75 Aligned_cols=52 Identities=13% Similarity=-0.042 Sum_probs=37.5
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeC--------CchHHHHHHHHHHhhcCce
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVP--------DERSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~--------d~e~~~~Ar~~~~~a~G~~ 96 (223)
.-|++|+=||. || .++-+|.+....+.++|-+|+ |++..+...+.+++. |+.
T Consensus 19 ~~p~~vvIiGg--G~--ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~-GV~ 78 (116)
T d1gesa2 19 ALPERVAVVGA--GY--IGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAE-GPQ 78 (116)
T ss_dssp SCCSEEEEECC--SH--HHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHH-SCE
T ss_pred hCCCEEEEECC--Ch--hhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHC-CCE
Confidence 35899999987 56 455555554445678888887 456677778888888 876
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=84.41 E-value=6.1 Score=29.10 Aligned_cols=78 Identities=19% Similarity=0.066 Sum_probs=51.7
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhh---cCce-EEEEecchHHHhcCCCCc
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDV---VGWV-SEVIVRQAEEVMGELKGV 114 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a---~G~~-I~li~GdA~evL~~L~~f 114 (223)
+.+.++|-=||+ |+.++++++..+..+- ..|+-+|+++++.+.-..-+..+ .+.. .....++-.+.+. .-
T Consensus 4 ~~k~~KI~IIGa--G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~a 77 (154)
T d1pzga1 4 VQRRKKVAMIGS--GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT---GA 77 (154)
T ss_dssp CSCCCEEEEECC--SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT---TC
T ss_pred ccCCCcEEEECC--CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc---CC
Confidence 346788888996 5567888776655432 48999999998876665556553 2333 3333444445554 68
Q ss_pred cEEEEeCC
Q 027409 115 DFLVVDCT 122 (223)
Q Consensus 115 DfVFIDa~ 122 (223)
|+|.+-|.
T Consensus 78 diVvitag 85 (154)
T d1pzga1 78 DCVIVTAG 85 (154)
T ss_dssp SEEEECCS
T ss_pred CeEEEecc
Confidence 99999874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=1.2 Score=35.65 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred CeE-EEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------HhcCC
Q 027409 43 KLI-VEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE----------VMGEL 111 (223)
Q Consensus 43 k~I-LEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e----------vL~~L 111 (223)
||| |==|.+.|. +.+++...+. ..+.+|+...+|++..+.+.+.++.. |..++++..|-.+ +..++
T Consensus 3 ~rVAlVTGas~GI-G~a~A~~la~-~~g~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 3 IHVALVTGGNKGI-GLAIVRDLCR-LFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCEEEESSCSSHH-HHHHHHHHHH-HSSSEEEEEESSHHHHHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCHH-HHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 455 334555553 3444433332 23679999999999999999999988 8777777777532 22223
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
+++|+++.-|.
T Consensus 80 g~iDiLVnNAG 90 (275)
T d1wmaa1 80 GGLDVLVNNAG 90 (275)
T ss_dssp SSEEEEEECCC
T ss_pred CCcEEEEEcCC
Confidence 57999998875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=84.04 E-value=2.1 Score=33.91 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=53.4
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHH-hhcCceEEEEecchHH----------HhcC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMY-DVVGWVSEVIVRQAEE----------VMGE 110 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~-~a~G~~I~li~GdA~e----------vL~~ 110 (223)
=|.+|=-|.+.|. +.+++...+ ..|.+|+-++++++..+.+.+.+. +. |.++..+..|..+ +..+
T Consensus 9 gK~alITGas~GI-G~aia~~la--~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 9 NKTIIVTGGNRGI-GLAFTRAVA--AAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TEEEEEETTTSHH-HHHHHHHHH--HTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3788888988774 566655544 347899999999988877776664 55 7777777787631 2223
Q ss_pred CCCccEEEEeCC
Q 027409 111 LKGVDFLVVDCT 122 (223)
Q Consensus 111 L~~fDfVFIDa~ 122 (223)
+++.|.++.-|.
T Consensus 85 ~g~iDilVnnAg 96 (260)
T d1h5qa_ 85 LGPISGLIANAG 96 (260)
T ss_dssp SCSEEEEEECCC
T ss_pred hCCCcEeccccc
Confidence 357998877653
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.66 E-value=2.3 Score=36.50 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|=..|+.+-++...+=. +.|-+ +|....+...+|.+|++.+ .........+..+.+. |+.++++..
T Consensus 46 ~~nPt~~~le~~la~LE~~~~a~~f--sSGMa--Aisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~-gi~~~~~d~ 120 (380)
T d1ibja_ 46 SGNPTRDALESLLAKLDKADRAFCF--TSGMA--ALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNT 120 (380)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEE--SSHHH--HHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGG-TCEEEEECT
T ss_pred CCChHHHHHHHHHHHHcCCceEEeh--hhHHH--HHHHHHHhhCCCCEEEEEecccccccchhhhhhccc-cccccccCc
Confidence 4578888888999999999887754 44653 3333334556677877654 3445556666667777 988777776
Q ss_pred chHHHhc-CC-CCccEEEEeC--CCcccHHHHHHhc-cC-CCceEEEEeCCCCCC
Q 027409 103 QAEEVMG-EL-KGVDFLVVDC--TSKDFARVLRFAR-FS-NKGAVLAFKNAFQRS 151 (223)
Q Consensus 103 dA~evL~-~L-~~fDfVFIDa--~K~~Y~~~f~~~~-~l-~~GgvIV~DNvl~~g 151 (223)
+-.+.+. .+ .+-++||+-. ++..-..=++.+. .. ..|..+|+||.|...
T Consensus 121 ~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP 175 (380)
T d1ibja_ 121 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSP 175 (380)
T ss_dssp TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCT
T ss_pred chHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccc
Confidence 6555444 34 4789999995 3333333334443 32 789999999988543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.61 E-value=0.54 Score=33.47 Aligned_cols=58 Identities=10% Similarity=-0.079 Sum_probs=39.2
Q ss_pred HhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch-------HHHHHHHHHHhhcCceEEEEec
Q 027409 38 AGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER-------SRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 38 ~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e-------~~~~Ar~~~~~a~G~~I~li~G 102 (223)
...++++|+=||. || +++-+|.+....+.+||-+|..+. ..+..++.+++. |+ +++.+
T Consensus 28 ~~~~~~~vvIiGg--G~--iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~-GV--~~~~~ 92 (122)
T d1xhca2 28 SIENSGEAIIIGG--GF--IGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEET-GV--KFFLN 92 (122)
T ss_dssp HHHHHSEEEEEEC--SH--HHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHT-TE--EEECS
T ss_pred HhhcCCcEEEECC--cH--HHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHC-Cc--EEEeC
Confidence 3456799999987 56 566666555555778988988654 455566667776 65 45544
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.55 E-value=1.1 Score=31.89 Aligned_cols=52 Identities=10% Similarity=-0.064 Sum_probs=39.0
Q ss_pred cCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc--------hHHHHHHHHHHhhcCce
Q 027409 40 WNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE--------RSRLAYVKAMYDVVGWV 96 (223)
Q Consensus 40 ~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~--------e~~~~Ar~~~~~a~G~~ 96 (223)
.-||+++=||. || .++-+|.+...-+.+||=+|..+ +..+..++.|++. |+.
T Consensus 21 ~~p~~~vIiG~--G~--ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~-GV~ 80 (122)
T d1v59a2 21 EIPKRLTIIGG--GI--IGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQ-GLD 80 (122)
T ss_dssp SCCSEEEEECC--SH--HHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHT-TCE
T ss_pred cCCCeEEEECC--Cc--hHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhc-cce
Confidence 46899999988 46 45555544444577888888755 8889999999998 876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.48 E-value=1.4 Score=35.32 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=56.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchH------HHh----cC
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAE------EVM----GE 110 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~------evL----~~ 110 (223)
+=|.+|=-|.+.|. +.+++.+.+ ..|.+|+-++++++..+.+.+.+... +.++..+..|.. +.+ .+
T Consensus 7 kgK~alVTGas~GI-G~aiA~~la--~~Ga~V~~~~r~~~~l~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGI-GHAIVEEFA--GFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 44788888988884 566555544 34789999999999999999999887 767777777753 122 22
Q ss_pred C-CCccEEEEeCC
Q 027409 111 L-KGVDFLVVDCT 122 (223)
Q Consensus 111 L-~~fDfVFIDa~ 122 (223)
+ +..|.++.-|.
T Consensus 83 ~~g~idilvnnAG 95 (259)
T d1xq1a_ 83 FGGKLDILINNLG 95 (259)
T ss_dssp HTTCCSEEEEECC
T ss_pred hCCCccccccccc
Confidence 2 35888887764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=83.40 E-value=1.2 Score=35.35 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=53.0
Q ss_pred Ce-EEEEccCcchHHHHHHHHHhcCC-----CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH----------
Q 027409 43 KL-IVEAWTHGGPITTSIGLAIAARH-----TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE---------- 106 (223)
Q Consensus 43 k~-ILEIGT~~Gys~Stl~la~A~~~-----~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e---------- 106 (223)
|+ ||=-|.+.|. +.+++...|... .+..|+.++++++.++...+.++.. |..+.++..|..+
T Consensus 1 K~VvlITGas~GI-G~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 1 KHILLITGAGKGI-GRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE-GALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp CEEEEEETTTSHH-HHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT-TCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEccCCCHH-HHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHH
Confidence 45 4555877773 556555444321 1234999999999999999999988 8777777777531
Q ss_pred HhcCCCCccEEEEeCCC
Q 027409 107 VMGELKGVDFLVVDCTS 123 (223)
Q Consensus 107 vL~~L~~fDfVFIDa~K 123 (223)
+..+++..|+++.-|.-
T Consensus 79 ~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGV 95 (240)
T ss_dssp HHHHTSCCSEEEECCCC
T ss_pred HHHHcCCcceeeccccc
Confidence 22233579999877653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.21 E-value=1.5 Score=30.50 Aligned_cols=53 Identities=17% Similarity=0.025 Sum_probs=38.1
Q ss_pred hcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch--------HHHHHHHHHHhhcCce
Q 027409 39 GWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER--------SRLAYVKAMYDVVGWV 96 (223)
Q Consensus 39 ~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e--------~~~~Ar~~~~~a~G~~ 96 (223)
-.-|++|+=||. || .++-+|.....-|.+||-+|..+. ..+...+.+++. |+.
T Consensus 19 ~~~p~~v~IiGg--G~--ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~-GI~ 79 (117)
T d1ebda2 19 GEVPKSLVVIGG--GY--IGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKK-GVE 79 (117)
T ss_dssp SSCCSEEEEECC--SH--HHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHT-TCE
T ss_pred hhcCCeEEEECC--Cc--cceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhc-CCE
Confidence 457899999988 56 555555554445778999997655 567777778887 865
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=83.05 E-value=7.6 Score=29.15 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=49.6
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCC--CCcEEEEEeCCchHHHHHHHHH----HhhcCceEEE-EecchHHHhcCCCCc
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARH--TCARHVCIVPDERSRLAYVKAM----YDVVGWVSEV-IVRQAEEVMGELKGV 114 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~--~~g~i~TIE~d~e~~~~Ar~~~----~~a~G~~I~l-i~GdA~evL~~L~~f 114 (223)
.-+|.=||.|..+....+....+..+ ....|+-+|+|+++++...+.+ +.. +...++ ...|-.|.|+ .-
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~eal~---~A 78 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK-APDIEFAATTDPEEAFT---DV 78 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH-CTTSEEEEESCHHHHHS---SC
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh-CCCcceEecCChhhccC---CC
Confidence 34677788875442111111111111 1358999999999976444443 344 555333 3456667676 68
Q ss_pred cEEEEeCCCcccH
Q 027409 115 DFLVVDCTSKDFA 127 (223)
Q Consensus 115 DfVFIDa~K~~Y~ 127 (223)
|||++=+....++
T Consensus 79 D~Vvitag~~~~~ 91 (167)
T d1u8xx1 79 DFVMAHIRVGKYA 91 (167)
T ss_dssp SEEEECCCTTHHH
T ss_pred CEEEECCCcCCCC
Confidence 9999999887775
|
| >d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=0.92 Score=32.38 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=46.8
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
+-||.-+|-|+...+..+..++.. |+. |. ...++.+.+..+ .+||+|++|-.=... .++++.++
T Consensus 4 ~lriLvVDD~~~~r~~i~~~L~~~-g~~~v~-~a~~g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir 72 (128)
T d1jbea_ 4 ELKFLVVDDFSTMRRIVRNLLKEL-GFNNVE-EAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIR 72 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT-TCCCEE-EESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC-CCcEEE-EecCchHHHHHHhcCCCCEEEEecccccCCHHHHHHHHH
Confidence 457999999999999999999998 986 43 346666655544 479999999863332 44555553
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=82.76 E-value=2.2 Score=36.98 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEe-CCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIV-PDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE-~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.=.|.+-.|=..|+.+-++...+=..+ |-++.+..+. +...+|.+|++.+ ..--.+......+.+. |++++++..
T Consensus 60 ~~nPT~~~LE~~la~LEgg~~a~~~sS--GmaAi~~~l~-~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~-Gi~~~~vd~ 135 (397)
T d1y4ia1 60 LGNPTTDALEKKLAVLERGEAGLATAS--GISAITTTLL-TLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRFVDA 135 (397)
T ss_dssp TSCHHHHHHHHHHHHHHTCSEEEEESS--HHHHHHHHHH-HHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred CCCHHHHHHHHHHHHHhCCccceeehH--HHHHHHHHHh-hccCCCCeeeeecccccccchhhhcccCCC-ceEeeccCC
Confidence 668989999999999999988776655 4422332332 4456677766654 5556667777888898 999888876
Q ss_pred chHHHhcC-C-CCccEEEEeCCCcccHHHH--HHh-ccC-CCceEEEEeCCCCC
Q 027409 103 QAEEVMGE-L-KGVDFLVVDCTSKDFARVL--RFA-RFS-NKGAVLAFKNAFQR 150 (223)
Q Consensus 103 dA~evL~~-L-~~fDfVFIDa~K~~Y~~~f--~~~-~~l-~~GgvIV~DNvl~~ 150 (223)
.-.+.+.. + ++-.+||+-.--.-..++. +.+ +.- +.|.++|+||.|..
T Consensus 136 ~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~at 189 (397)
T d1y4ia1 136 GKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 189 (397)
T ss_dssp TSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred CCHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccC
Confidence 54454443 4 3789999997433333333 333 332 77999999998753
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.60 E-value=6.8 Score=28.30 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=47.9
Q ss_pred eEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce--EEEEecchHHHhcCCCCccEEEEeC
Q 027409 44 LIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV--SEVIVRQAEEVMGELKGVDFLVVDC 121 (223)
Q Consensus 44 ~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~--I~li~GdA~evL~~L~~fDfVFIDa 121 (223)
+|-=||+ |..+++++++.+..+--.+|+-+|+++++.+.-..-+..+..+. ..+..||-.+ +..-|+|++=|
T Consensus 2 KI~IIGa--G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvita 75 (140)
T d1a5za1 2 KIGIVGL--GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD----LKGSDVVIVAA 75 (140)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG----GTTCSEEEECC
T ss_pred EEEEECc--CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH----hcCCCEEEEec
Confidence 3555785 44567777766665555689999999988765544455541222 6666776432 34689999987
Q ss_pred CC
Q 027409 122 TS 123 (223)
Q Consensus 122 ~K 123 (223)
..
T Consensus 76 g~ 77 (140)
T d1a5za1 76 GV 77 (140)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.79 Score=36.45 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch-----H-HHhcCCCCc
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA-----E-EVMGELKGV 114 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA-----~-evL~~L~~f 114 (223)
.=|++|=.|.+.| ++.+++...+ ..|.+|+-++++++.++...+.+.. ++.+..|. . +.+.++++.
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la--~~G~~V~~~~r~~~~l~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALH--ATGARVVAVSRTQADLDSLVRECPG-----IEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHSTT-----CEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHH--HcCCEEEEEECCHHHHHHHHHhcCC-----CeEEEEeCCCHHHHHHHHHHhCCc
Confidence 3488999999988 4566665544 3478999999999887766554432 23333343 2 355667789
Q ss_pred cEEEEeCC
Q 027409 115 DFLVVDCT 122 (223)
Q Consensus 115 DfVFIDa~ 122 (223)
|.++.-|.
T Consensus 78 DilVnnAg 85 (244)
T d1pr9a_ 78 DLLVNNAA 85 (244)
T ss_dssp CEEEECCC
T ss_pred eEEEeccc
Confidence 98876553
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.50 E-value=2.6 Score=33.28 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=54.8
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcC-ceEEEEecchHH------Hhc----CC
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVG-WVSEVIVRQAEE------VMG----EL 111 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G-~~I~li~GdA~e------vL~----~L 111 (223)
|.+|=-|.+.|. +.+++...+ ..|++|+-++++++..+.+.+.+.+..+ ..+.++..|..+ .+. ++
T Consensus 4 KvalITGas~GI-G~aia~~la--~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 4 KVALVTGAAQGI-GRAFAEALL--LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp CEEEEETTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 778888988884 566665554 3478999999999999988888876412 227788787632 222 22
Q ss_pred CCccEEEEeCCC
Q 027409 112 KGVDFLVVDCTS 123 (223)
Q Consensus 112 ~~fDfVFIDa~K 123 (223)
++.|.++.-|.-
T Consensus 81 G~iDilVnnAg~ 92 (254)
T d2gdza1 81 GRLDILVNNAGV 92 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcCeecccccc
Confidence 579999888753
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=81.81 E-value=0.58 Score=39.03 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=77.1
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecch
Q 027409 25 KESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQA 104 (223)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA 104 (223)
..+....+|..+-+.+.-.. +.- |.+|- ++|.....+.-+++-+|..|+..+.-+++|+.- -.|.+...|+
T Consensus 67 ~p~~~~~yl~~v~~~n~~~~---l~~---YPGSP-~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~--~~~~v~~~DG 137 (271)
T d2oo3a1 67 LPSLFLEYISVIKQINLNST---LSY---YPGSP-YFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDG 137 (271)
T ss_dssp SCGGGHHHHHHHHHHSSSSS---CCE---EECHH-HHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCH
T ss_pred hhhhHHHHHHHHHHhCCCCC---cCc---CCCCH-HHHHHhCCCCCceEEeecCHHHHHHHHHHhccC--CCceEEcCch
Confidence 34556777776666554322 122 44566 444444445569999999999988888776542 2399999999
Q ss_pred HHHhcC-C---CCccEEEEeC---CCcccHHHHHHhc----cCCCceEEEEeCCCC
Q 027409 105 EEVMGE-L---KGVDFLVVDC---TSKDFARVLRFAR----FSNKGAVLAFKNAFQ 149 (223)
Q Consensus 105 ~evL~~-L---~~fDfVFIDa---~K~~Y~~~f~~~~----~l~~GgvIV~DNvl~ 149 (223)
.+.|.. + +.==||+||- .|+.|.+..+.+. .-+.|-++|=-=++.
T Consensus 138 ~~~l~allPP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~ 193 (271)
T d2oo3a1 138 VSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 193 (271)
T ss_dssp HHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred HHHHHhhCCCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccC
Confidence 997765 3 2456999995 5889998888662 226666665554443
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=81.73 E-value=0.52 Score=33.90 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=46.2
Q ss_pred CcEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 69 CARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 69 ~g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.-+|.=+|-|+......++.+++. |+. |.. ..|+.+.+..+ .+||+|++|..=... .++++.++
T Consensus 6 ~~kILiVDD~~~~~~~l~~~L~~~-g~~~v~~-a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr 74 (129)
T d1p6qa_ 6 KIKVLIVDDQVTSRLLLGDALQQL-GFKQITA-AGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVR 74 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTT-TCSCEEC-CSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CCeEEEE-ECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHH
Confidence 347899999999999999999998 996 544 45555544433 479999999875443 34555554
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=81.49 E-value=6.7 Score=33.48 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEE-eCCchHHHHHHHHHHhhcCceEEEEec
Q 027409 24 IKESGVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCI-VPDERSRLAYVKAMYDVVGWVSEVIVR 102 (223)
Q Consensus 24 ii~p~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TI-E~d~e~~~~Ar~~~~~a~G~~I~li~G 102 (223)
.-.|.+..|=..|+.+-++...+=..| |-++.+.++ .+...++.+|++- ..........++.+.+. |+.+++...
T Consensus 55 ~~nPt~~~le~~la~LEg~~~a~~~~S--GMaAi~~~l-~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~-Gi~~~~~d~ 130 (391)
T d1cl1a_ 55 RGTLTHFSLQQAMCELEGGAGCVLFPC--GAAAVANSI-LAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWFDP 130 (391)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESS--HHHHHHHHH-HHHCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEECT
T ss_pred CCChhHHHHHHHHHHHhCCccEEEecc--ccceeeehh-hcccCCCCeEEEecccccchhhhhhhccccc-ccccccccC
Confidence 678999999999999999998887665 442232222 2344556676654 45666677777778887 988777664
Q ss_pred -chHHHhcCC-CCccEEEEeCCCcccHHHH--HHh----ccCCCceEEEEeCCCCC
Q 027409 103 -QAEEVMGEL-KGVDFLVVDCTSKDFARVL--RFA----RFSNKGAVLAFKNAFQR 150 (223)
Q Consensus 103 -dA~evL~~L-~~fDfVFIDa~K~~Y~~~f--~~~----~~l~~GgvIV~DNvl~~ 150 (223)
|..++...+ ++-++||+-.--.-..+.. +.+ +...+|.++|+||.|..
T Consensus 131 ~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~at 186 (391)
T d1cl1a_ 131 LIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAA 186 (391)
T ss_dssp TCGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTT
T ss_pred ccccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccc
Confidence 333333344 3689999987433332222 222 32357999999998753
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.49 E-value=0.95 Score=32.14 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=44.5
Q ss_pred EEEEEeCCchHHHHHHHHHHhhcCc-eEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 71 RHVCIVPDERSRLAYVKAMYDVVGW-VSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 71 ~i~TIE~d~e~~~~Ar~~~~~a~G~-~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
||.=+|-|+...+..++++++. |. .+--...++.+.|..+ ..||+||+|-.=..- .++++.++
T Consensus 3 rILivDD~~~~~~~l~~~L~~~-~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG~e~~~~ir 70 (123)
T d1dz3a_ 3 KVCIADDNRELVSLLDEYISSQ-PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIR 70 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 6778899999999999999887 64 2222356666666554 379999999874433 45666664
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=81.43 E-value=0.92 Score=32.89 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=50.3
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCce-EEEEecchHHHhcCC--CCccEEEEeCCCcc--cHHHHHHhccCCCceEE
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWV-SEVIVRQAEEVMGEL--KGVDFLVVDCTSKD--FARVLRFARFSNKGAVL 142 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~-I~li~GdA~evL~~L--~~fDfVFIDa~K~~--Y~~~f~~~~~l~~GgvI 142 (223)
-||.=+|-|+...+.-+..+++. |.. +-...+|+.+.+..+ ..||+|++|-.=.. =.++++.++-..+...|
T Consensus 4 irVLiVDD~~~~r~~l~~~L~~~-g~~~~v~~a~~g~~al~~~~~~~pDlvllDi~MP~~dG~e~~~~ir~~~~~~~i 80 (140)
T d1a2oa1 4 IRVLSVDDSALMRQIMTEIINSH-SDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (140)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 47888999999999999999988 864 333457877776655 37999999985332 24556666544444433
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.35 E-value=2.2 Score=33.85 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCce---EEEEecchH------HHhcC---
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWV---SEVIVRQAE------EVMGE--- 110 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~---I~li~GdA~------evL~~--- 110 (223)
|.+|=-|.+.|. +.+++...+ ..|.+|+-++++++..+.+.+.+... |.. +.++..|.. +.+.+
T Consensus 6 KvalVTGas~GI-G~aia~~la--~~Ga~V~~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 6 KVAIITGSSNGI-GRATAVLFA--REGAKVTITGRHAERLEETRQQILAA-GVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp CEEEETTTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHhc-CCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 667777888773 566555544 34789999999999999999999887 654 888888763 22222
Q ss_pred -CCCccEEEEeC
Q 027409 111 -LKGVDFLVVDC 121 (223)
Q Consensus 111 -L~~fDfVFIDa 121 (223)
+++.|.++.-|
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 24789887665
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=81.04 E-value=1.3 Score=32.35 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=44.2
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEE-EecchH---HHhcCC------CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEV-IVRQAE---EVMGEL------KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~l-i~GdA~---evL~~L------~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.+|.=+|-|+...+..++.+++. |...++ ...|+. +.|.+- ..||+|++|..=... .++++.++
T Consensus 4 k~ILiVdD~~~~~~~l~~~L~~~-g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir 79 (144)
T d1i3ca_ 4 KVILLVEDSKADSRLVQEVLKTS-TIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 79 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSC-CSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHH
Confidence 47899999999999999999998 776333 344544 445431 259999999864433 44555553
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.82 E-value=3.7 Score=28.87 Aligned_cols=72 Identities=14% Similarity=-0.038 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCc---------hHHHHHHHHHHhhcCceEE
Q 027409 28 GVAELLSAMAAGWNAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDE---------RSRLAYVKAMYDVVGWVSE 98 (223)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~---------e~~~~Ar~~~~~a~G~~I~ 98 (223)
+-..=|...+...++|+|+=||. |+ .++-+|.+....+-+||=+|..+ +..+..++.+++. | |+
T Consensus 16 ~da~~i~~~~~~~~~k~vvViGg--G~--iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~-g--v~ 88 (123)
T d1nhpa2 16 QWAIKLKQKTVDPEVNNVVVIGS--GY--IGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN-N--IT 88 (123)
T ss_dssp HHHHHHHHHHTCTTCCEEEEECC--SH--HHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTT-T--EE
T ss_pred HHHHHHHHHhhccCCCEEEEECC--hH--HHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcC-C--eE
Confidence 33444445555567899999977 56 55556555555577888887654 3345555666665 5 45
Q ss_pred EEecchHH
Q 027409 99 VIVRQAEE 106 (223)
Q Consensus 99 li~GdA~e 106 (223)
++.|...+
T Consensus 89 ~~~~~~v~ 96 (123)
T d1nhpa2 89 IATGETVE 96 (123)
T ss_dssp EEESCCEE
T ss_pred EEeCceEE
Confidence 55555444
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.60 E-value=1 Score=34.10 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=47.1
Q ss_pred cEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEeCCCccc--HHHHHHhc
Q 027409 70 ARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 70 g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
-||.=+|-+|...+..+..+++. |+.+.-..+++.+.+.-+ ..||+|++|-.=... .++++.++
T Consensus 4 ~kILiVDD~~~~r~~l~~~L~~~-g~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~dG~e~~~~ir 71 (190)
T d1s8na_ 4 RRVLIAEDEALIRMDLAEMLREE-GYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIA 71 (190)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhcCCCCEEEEeccccCcchHHHHHHHH
Confidence 48999999999999999999998 997433457766666544 379999999863333 44555443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.52 E-value=1.5 Score=33.48 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=60.4
Q ss_pred CeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCC--CCccEEEEe
Q 027409 43 KLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGEL--KGVDFLVVD 120 (223)
Q Consensus 43 k~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L--~~fDfVFID 120 (223)
..||=.|.+.|.+..++.||++. +.+++.+-.++++.+.+++ . |.. .++.-+-.+....+ ..+|.| +|
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~---Ga~Via~~~~~~k~~~~~~----l-Gad-~vi~~~~~~~~~~l~~~~~~~v-vD 102 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKL---GYQVVAVSGRESTHEYLKS----L-GAS-RVLPRDEFAESRPLEKQVWAGA-ID 102 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCGGGHHHHHH----H-TEE-EEEEGGGSSSCCSSCCCCEEEE-EE
T ss_pred CcEEEEEccccchHHHHHHHHHc---CCCeEEEecchhHHHHHHh----h-ccc-cccccccHHHHHHHHhhcCCee-EE
Confidence 48998898888877888888764 7899999999998766653 4 554 22322222222334 257876 58
Q ss_pred CCCcccHHHHH-HhccCCCceEEEEe
Q 027409 121 CTSKDFARVLR-FARFSNKGAVLAFK 145 (223)
Q Consensus 121 a~K~~Y~~~f~-~~~~l~~GgvIV~D 145 (223)
+--+ ++++ .+..+++||.||.=
T Consensus 103 ~Vgg---~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 103 TVGD---KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp SSCH---HHHHHHHHTEEEEEEEEEC
T ss_pred Ecch---HHHHHHHHHhccccceEee
Confidence 8644 3565 45667888888874
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.45 E-value=2.9 Score=33.38 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCch-HHHHHHHHHHhhcCceEEEEecchHH--Hh----c----
Q 027409 41 NAKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDER-SRLAYVKAMYDVVGWVSEVIVRQAEE--VM----G---- 109 (223)
Q Consensus 41 ~ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e-~~~~Ar~~~~~a~G~~I~li~GdA~e--vL----~---- 109 (223)
+=|.+|=.|.+.| ++.+++...+. .|.+|+-++++.+ ..+...+.+++. |.++..+..|..+ .+ .
T Consensus 6 ~gK~alITGas~G-IG~aia~~la~--~G~~Vv~~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 6 EGKVVVITGSSTG-LGKSMAIRFAT--EKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCcHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3477888888877 35666655543 4789999998754 677778888888 8777777777642 22 2
Q ss_pred CCCCccEEEEeCC
Q 027409 110 ELKGVDFLVVDCT 122 (223)
Q Consensus 110 ~L~~fDfVFIDa~ 122 (223)
++++.|.++.-|.
T Consensus 82 ~~G~iDiLVnnAG 94 (261)
T d1geea_ 82 EFGKLDVMINNAG 94 (261)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCCCEeeccce
Confidence 2247898887764
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=80.43 E-value=0.92 Score=33.63 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHHHhcCCCCccEEEEeCCCccc--HHHHHHhc
Q 027409 68 TCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEEVMGELKGVDFLVVDCTSKDF--ARVLRFAR 134 (223)
Q Consensus 68 ~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~evL~~L~~fDfVFIDa~K~~Y--~~~f~~~~ 134 (223)
.++||.-+|-|+...+.-+..++.. |+.+ +-.|+....+-.-.+||+|++|..=..- .+++..++
T Consensus 12 ~~~rILiVDD~~~~~~~l~~~L~~~-g~~v-~~~~~~~~~~~~~~~~DlillD~~mP~~dG~el~~~ir 78 (153)
T d1w25a2 12 LGGRVLIVDDNERQAQRVAAELGVE-HRPV-IESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALR 78 (153)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTTT-SEEE-EECCHHHHHHHHHSSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHC-CCEE-EEccHHHHHHHhcCCCCEEEEECccccccchHHHHHHH
Confidence 3679999999999999999999888 8874 2233332222222479999999864432 34445553
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=80.08 E-value=2.7 Score=33.43 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCeEEEEccCcchHHHHHHHHHhcCCCCcEEEEEeCCchHHHHHHHHHHhhcCceEEEEecchHH--Hh--------cCC
Q 027409 42 AKLIVEAWTHGGPITTSIGLAIAARHTCARHVCIVPDERSRLAYVKAMYDVVGWVSEVIVRQAEE--VM--------GEL 111 (223)
Q Consensus 42 ak~ILEIGT~~Gys~Stl~la~A~~~~~g~i~TIE~d~e~~~~Ar~~~~~a~G~~I~li~GdA~e--vL--------~~L 111 (223)
=|.+|=.|.+.|. +.+++...+ ..|++|+-++++++..+.+.+.+... |. +.++..|..+ .+ .++
T Consensus 6 gKvalITGas~GI-G~aia~~la--~~Ga~V~i~~r~~~~~~~~~~~l~~~-~~-~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 6 DKVAIITGGAGGI-GETTAKLFV--RYGAKVVIADIADDHGQKVCNNIGSP-DV-ISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TCEEEEESTTSHH-HHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHCCT-TT-EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHH-HHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHhcCC-Cc-eEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4778888988884 565555444 34789999999999988888887665 44 6667777531 22 222
Q ss_pred CCccEEEEeCC
Q 027409 112 KGVDFLVVDCT 122 (223)
Q Consensus 112 ~~fDfVFIDa~ 122 (223)
+..|.++.-|.
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 47899887663
|