Citrus Sinensis ID: 027416

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMVEH
ccccccccccccEEEEEEEEcHHHHHHHccccccHHHHHHHcccccEEEEEEEccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHccccEEEEccccc
ccccccccccccEEEEEEEEcHHHHHHHHHHHHcHHHHHHccccccEEEEEEEccccccccccccccccccccccHHHHHccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEEEcccc
miaqgsqfslRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSlcqpfnlkmslsgplkityhspeeeiafgpgcwlWDYLrrsgasgfllplsggadsssVAAIVGCMCQLVVKEIANGNEQVKADAIRigryangefptesREFAKRIFYTVFmgsenssqETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTltgkrprykvtmveh
miaqgsqfslrdVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRyangefptesrEFAKRIFYTVfmgsenssqeTRMRAKKLADEIGSWHLDVSIDTVVSAFLSLfqtltgkrprykvtmveh
MIAQGSQFSLRdvevvvaqvdldavaGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMVEH
********SLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG**************LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP*********
MIAQGSQFSLRDVEVVVAQVDLDAVAG******************SSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS***********KKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTM***
MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF********KISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS*************LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMVEH
*****SQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMVEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q5ZMA6 707 Glutamine-dependent NAD(+ yes no 0.968 0.305 0.493 1e-55
P38795 714 Glutamine-dependent NAD(+ yes no 0.977 0.305 0.486 1e-54
Q54ML1 713 Glutamine-dependent NAD(+ yes no 0.941 0.294 0.470 1e-53
Q711T7 725 Glutamine-dependent NAD(+ yes no 0.964 0.296 0.472 4e-51
O74940 700 Putative glutamine-depend yes no 0.950 0.302 0.461 9e-50
Q812E8 725 Glutamine-dependent NAD(+ yes no 0.964 0.296 0.453 9e-50
Q6IA69 706 Glutamine-dependent NAD(+ yes no 0.964 0.304 0.458 3e-48
Q3ZBF0 706 Glutamine-dependent NAD(+ yes no 0.973 0.307 0.458 6e-48
Q9VYA0 787 Probable glutamine-depend yes no 0.968 0.274 0.415 1e-47
Q4R5Y2 706 Glutamine-dependent NAD(+ N/A no 0.964 0.304 0.458 3e-47
>sp|Q5ZMA6|NADE_CHICK Glutamine-dependent NAD(+) synthetase OS=Gallus gallus GN=NADSYN1 PE=2 SV=1 Back     alignment and function desciption
 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 145/217 (66%), Gaps = 1/217 (0%)

Query: 2   IAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLK 61
           +AQGSQFSL DVEV+VA +DL+ V  +R  ISS    AS       + V ++L    +L 
Sbjct: 255 VAQGSQFSLDDVEVLVATLDLEDVRSYRAEISSRNLAASKVNPFPRIKVNFALSCSDDLS 314

Query: 62  MSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQ 121
           + +  P++  +HSPEEEI  GP CWLWDYLRRS  +GFLLPLSGG DSS+ A IV  MC+
Sbjct: 315 VPICVPIQWRHHSPEEEICLGPACWLWDYLRRSKQAGFLLPLSGGIDSSATACIVYSMCR 374

Query: 122 LVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKK 181
            V   + NGN +V ADA +I  +     P + +EF KR+F T +M SENSSQ+TR RAK 
Sbjct: 375 QVCLAVKNGNSEVLADARKI-VHDETYIPEDPQEFCKRVFTTCYMASENSSQDTRNRAKL 433

Query: 182 LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
           LA++IGS+H++++ID  V A + +F  +TG+ PR+ V
Sbjct: 434 LAEQIGSYHINLNIDAAVKAIVGIFSMVTGRTPRFSV 470

Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 1
>sp|P38795|NADE_YEAST Glutamine-dependent NAD(+) synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QNS1 PE=1 SV=1 Back     alignment and function description
>sp|Q54ML1|NADE_DICDI Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1 Back     alignment and function description
>sp|Q711T7|NADE_MOUSE Glutamine-dependent NAD(+) synthetase OS=Mus musculus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|O74940|NADE_SCHPO Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=3 SV=1 Back     alignment and function description
>sp|Q812E8|NADE_RAT Glutamine-dependent NAD(+) synthetase OS=Rattus norvegicus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|Q6IA69|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZBF0|NADE_BOVIN Glutamine-dependent NAD(+) synthetase OS=Bos taurus GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VYA0|NADE_DROME Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1 Back     alignment and function description
>sp|Q4R5Y2|NADE_MACFA Glutamine-dependent NAD(+) synthetase OS=Macaca fascicularis GN=NADSYN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
356513255 731 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.298 0.862 1e-107
356523661 731 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.298 0.857 1e-106
224053749 730 predicted protein [Populus trichocarpa] 0.977 0.298 0.848 1e-105
449524932 720 PREDICTED: LOW QUALITY PROTEIN: glutamin 0.977 0.302 0.857 1e-105
449452230 720 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.302 0.857 1e-105
225426228 724 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.301 0.849 1e-104
224075164 730 predicted protein [Populus trichocarpa] 0.964 0.294 0.851 1e-104
297847854 725 carbon-nitrogen hydrolase family protein 0.977 0.300 0.825 1e-102
15221990 725 NAD synthetase [Arabidopsis thaliana] gi 0.977 0.300 0.825 1e-102
255555661 665 glutamine-dependent NAD(+) synthetase, p 0.977 0.327 0.844 1e-101
>gi|356513255|ref|XP_003525329.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/218 (86%), Positives = 201/218 (92%)

Query: 1   MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNL 60
           ++AQGSQFSL+DVEVVVAQ+DLD VA  RGS+SSFQEQASCKTK+ SV V YSLC PFNL
Sbjct: 253 VVAQGSQFSLKDVEVVVAQIDLDVVASLRGSLSSFQEQASCKTKVPSVEVPYSLCLPFNL 312

Query: 61  KMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
           K  LS PLKI YH+PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC
Sbjct: 313 KTRLSLPLKIKYHTPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 372

Query: 121 QLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAK 180
           QLVVKEIANG+EQVKADAIRIG Y +G++PT+SREFAKRIFYTVFMGSENSS+ TR RAK
Sbjct: 373 QLVVKEIANGDEQVKADAIRIGNYKDGQYPTDSREFAKRIFYTVFMGSENSSEMTRSRAK 432

Query: 181 KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
            LADEIGSWHLDVSID VVSAFLSLFQTLTGKRPRYKV
Sbjct: 433 VLADEIGSWHLDVSIDVVVSAFLSLFQTLTGKRPRYKV 470

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523661|ref|XP_003530455.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|224053749|ref|XP_002297960.1| predicted protein [Populus trichocarpa] gi|222845218|gb|EEE82765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524932|ref|XP_004169475.1| PREDICTED: LOW QUALITY PROTEIN: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452230|ref|XP_004143863.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225426228|ref|XP_002263774.1| PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera] gi|297742398|emb|CBI34547.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075164|ref|XP_002304569.1| predicted protein [Populus trichocarpa] gi|222842001|gb|EEE79548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297847854|ref|XP_002891808.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337650|gb|EFH68067.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15221990|ref|NP_175906.1| NAD synthetase [Arabidopsis thaliana] gi|12321572|gb|AAG50835.1|AC073944_2 hypothetical protein [Arabidopsis thaliana] gi|38564264|gb|AAR23711.1| At1g55090 [Arabidopsis thaliana] gi|110736541|dbj|BAF00237.1| hypothetical protein [Arabidopsis thaliana] gi|332195063|gb|AEE33184.1| NAD synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255555661|ref|XP_002518866.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] gi|223541853|gb|EEF43399.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2205667 725 AT1G55090 [Arabidopsis thalian 0.977 0.300 0.770 3.3e-86
UNIPROTKB|Q5ZMA6 707 NADSYN1 "Glutamine-dependent N 0.968 0.305 0.451 6.4e-45
UNIPROTKB|F1P4D3 707 NADSYN1 "Glutamine-dependent N 0.968 0.305 0.451 8.4e-45
SGD|S000001116 714 QNS1 "Glutamine-dependent NAD( 0.977 0.305 0.436 2.1e-43
DICTYBASE|DDB_G0285877 713 nadsyn1 "glutamine-dependent N 0.964 0.301 0.435 4.6e-43
CGD|CAL0004651 714 orf19.1460 [Candida albicans ( 0.968 0.302 0.457 2.2e-42
UNIPROTKB|Q5ALW6 714 CaO19.1460 "Putative uncharact 0.968 0.302 0.457 2.2e-42
MGI|MGI:1926164 725 Nadsyn1 "NAD synthetase 1" [Mu 0.964 0.296 0.435 5.2e-41
POMBASE|SPCC553.02 700 SPCC553.02 "glutamine-dependen 0.959 0.305 0.420 4.2e-40
RGD|727801 725 Nadsyn1 "NAD synthetase 1" [Ra 0.964 0.296 0.416 6.6e-40
TAIR|locus:2205667 AT1G55090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 168/218 (77%), Positives = 184/218 (84%)

Query:     1 MIAQGSQFSLRXXXXXXXXXXXXXXXGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNL 60
             ++AQGSQFSLR                 RGSISSFQEQASCK K+SSVAV   L Q FNL
Sbjct:   253 VVAQGSQFSLRDVEVIISQVDLDAVASLRGSISSFQEQASCKVKVSSVAVPCRLTQSFNL 312

Query:    61 KMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
             KM+LS P KI YHSP+EEIAFGP CW+WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC
Sbjct:   313 KMTLSSPKKIIYHSPQEEIAFGPACWMWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 372

Query:   121 QLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAK 180
             QLVVKEIA G+EQVKADA RIG YANG+FPT+S+EFAKRIFYTVFMGSENSS+ET+ R+K
Sbjct:   373 QLVVKEIAKGDEQVKADANRIGNYANGQFPTDSKEFAKRIFYTVFMGSENSSEETKRRSK 432

Query:   181 KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
             +LADEIG+WHLDV ID VVSA LSLFQT+TGKRPRYKV
Sbjct:   433 QLADEIGAWHLDVCIDGVVSAVLSLFQTVTGKRPRYKV 470
GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0009435 "NAD biosynthetic process" evidence=IEA
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=RCA
UNIPROTKB|Q5ZMA6 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4D3 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000001116 QNS1 "Glutamine-dependent NAD(+) synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285877 nadsyn1 "glutamine-dependent NAD(+) synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0004651 orf19.1460 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ALW6 CaO19.1460 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
MGI|MGI:1926164 Nadsyn1 "NAD synthetase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPCC553.02 SPCC553.02 "glutamine-dependent NAD(+) synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
RGD|727801 Nadsyn1 "NAD synthetase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000769
NAD+ synthase (glutamine-hydrolysing) (EC-6.3.5.1) (730 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_308000002
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)
     •• 0.917
gw1.XIII.983.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.916
gw1.70.673.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.916
gw1.IX.3597.1
NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)
     •  0.910
gw1.I.1484.1
NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)
     •  0.909
grail3.0151001701
hypothetical protein (395 aa)
     •  0.899
fgenesh4_pg.C_scaffold_145000062
hypothetical protein (414 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
PLN02339 700 PLN02339, PLN02339, NAD+ synthase (glutamine-hydro 1e-150
cd00553 248 cd00553, NAD_synthase, NAD+ synthase is a homodime 5e-29
pfam02540 242 pfam02540, NAD_synthase, NAD synthase 2e-09
COG0171 268 COG0171, NadE, NAD synthase [Coenzyme metabolism] 6e-07
TIGR00552 250 TIGR00552, nadE, NAD+ synthetase 1e-06
PRK00768 268 PRK00768, nadE, NAD synthetase; Reviewed 2e-05
PRK13980 265 PRK13980, PRK13980, NAD synthetase; Provisional 6e-05
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 6e-05
>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information 
 Score =  434 bits (1118), Expect = e-150
 Identities = 174/225 (77%), Positives = 191/225 (84%), Gaps = 3/225 (1%)

Query: 1   MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNL 60
           ++AQGSQFSL+DVEVV A VDLDAV  FRGSISSF+EQAS K ++ SVAV + LC PF+L
Sbjct: 253 VVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSL 312

Query: 61  KMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
            +  S PLKI YHSPEEEIA GP CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG MC
Sbjct: 313 SLVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMC 372

Query: 121 QLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAK 180
           QLVVK I  G+EQVKADA RIG YA+GE PT+S+EFAKRIFYTV+MGSENSS+ETR RAK
Sbjct: 373 QLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAK 432

Query: 181 KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV---TMVE 222
           +LADEIGS HLDV ID VVSA LSLFQTLTGKRPRYKV   +  E
Sbjct: 433 QLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAE 477

Length = 700
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase Back     alignment and domain information
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase Back     alignment and domain information
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 99.91
PF02540 242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 99.78
PTZ00323 294 NAD+ synthase; Provisional 99.75
PRK13981 540 NAD synthetase; Provisional 99.75
PRK00768 268 nadE NAD synthetase; Reviewed 99.7
cd00553 248 NAD_synthase NAD+ synthase is a homodimer, which c 99.67
COG0171 268 NadE NAD synthase [Coenzyme metabolism] 99.66
PRK13980 265 NAD synthetase; Provisional 99.61
PRK00876 326 nadE NAD synthetase; Reviewed 99.47
TIGR00552 250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 99.36
COG1606 269 ATP-utilizing enzymes of the PP-loop superfamily [ 99.0
PF03054 356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 98.96
COG0482 356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 98.93
TIGR00268 252 conserved hypothetical protein TIGR00268. The N-te 98.9
PLN02347 536 GMP synthetase 98.72
TIGR00884 311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 98.71
PF00733 255 Asn_synthase: Asparagine synthase; InterPro: IPR00 98.65
PRK14665 360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 98.64
PRK00074 511 guaA GMP synthase; Reviewed 98.59
cd01990 202 Alpha_ANH_like_I This is a subfamily of Adenine nu 98.58
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 98.57
PRK09431 554 asnB asparagine synthetase B; Provisional 98.56
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 98.56
COG0603 222 Predicted PP-loop superfamily ATPase [General func 98.56
TIGR00364 201 exsB protein. This protein family is represented b 98.56
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 98.56
PRK00919 307 GMP synthase subunit B; Validated 98.55
PRK11106 231 queuosine biosynthesis protein QueC; Provisional 98.55
TIGR03573 343 WbuX N-acetyl sugar amidotransferase. This enzyme 98.54
TIGR00420 352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 98.52
PRK14664 362 tRNA-specific 2-thiouridylase MnmA; Provisional 98.49
PRK04527 400 argininosuccinate synthase; Provisional 98.47
cd01997 295 GMP_synthase_C The C-terminal domain of GMP synthe 98.46
cd01991 269 Asn_Synthase_B_C The C-terminal domain of Asparagi 98.45
PF06508 209 QueC: Queuosine biosynthesis protein QueC; InterPr 98.45
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 98.44
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 98.44
KOG2805 377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 98.43
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 98.43
cd01998 349 tRNA_Me_trans tRNA methyl transferase. This family 98.43
PRK00143 346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 98.4
PTZ00077 586 asparagine synthetase-like protein; Provisional 98.37
PRK00509 399 argininosuccinate synthase; Provisional 98.32
PRK01565 394 thiamine biosynthesis protein ThiI; Provisional 98.31
PRK13820 394 argininosuccinate synthase; Provisional 98.31
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 98.29
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 98.28
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 98.28
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 98.22
cd01713173 PAPS_reductase This domain is found in phosphoaden 98.16
PRK14561 194 hypothetical protein; Provisional 98.12
PLN00200 404 argininosuccinate synthase; Provisional 98.09
PRK08576 438 hypothetical protein; Provisional 98.07
TIGR00032 394 argG argininosuccinate synthase. argG in bacteria, 98.06
cd01999 385 Argininosuccinate_Synthase Argininosuccinate synth 98.02
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 98.01
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 97.91
cd01995169 ExsB ExsB is a transcription regulator related pro 97.89
TIGR00342 371 thiazole biosynthesis/tRNA modification protein Th 97.89
PRK13795 636 hypothetical protein; Provisional 97.84
PRK08349198 hypothetical protein; Validated 97.78
TIGR03679 218 arCOG00187 arCOG00187 universal archaeal metal-bin 97.77
PRK10696 258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 97.75
cd01712177 ThiI ThiI is required for thiazole synthesis in th 97.73
PRK08384 381 thiamine biosynthesis protein ThiI; Provisional 97.62
PRK13794 479 hypothetical protein; Provisional 97.58
PRK05253 301 sulfate adenylyltransferase subunit 2; Provisional 97.55
COG0519 315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 97.51
PF01507174 PAPS_reduct: Phosphoadenosine phosphosulfate reduc 97.5
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 97.49
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 97.48
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 97.4
PRK02090 241 phosphoadenosine phosphosulfate reductase; Provisi 97.36
PF00764 388 Arginosuc_synth: Arginosuccinate synthase; InterPr 97.26
PRK08557 417 hypothetical protein; Provisional 97.24
COG0137 403 ArgG Argininosuccinate synthase [Amino acid transp 97.17
PRK05370 447 argininosuccinate synthase; Validated 97.1
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 97.08
COG2117 198 Predicted subunit of tRNA(5-methylaminomethyl-2-th 97.01
PRK01269 482 tRNA s(4)U8 sulfurtransferase; Provisional 96.96
TIGR00289 222 conserved hypothetical protein TIGR00289. Homologo 96.95
KOG1622 552 consensus GMP synthase [Nucleotide transport and m 96.94
TIGR00434 212 cysH phosophoadenylyl-sulfate reductase (thioredox 96.52
TIGR02039 294 CysD sulfate adenylyltransferase, small subunit. I 96.38
TIGR02057 226 PAPS_reductase phosphoadenosine phosphosulfate red 96.31
COG1365 255 Predicted ATPase (PP-loop superfamily) [General fu 96.29
PRK12563 312 sulfate adenylyltransferase subunit 2; Provisional 96.22
COG0301 383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 95.82
COG0175 261 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr 95.57
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 95.41
TIGR00290 223 MJ0570_dom MJ0570-related uncharacterized domain. 95.05
KOG1706 412 consensus Argininosuccinate synthase [Amino acid t 94.41
TIGR03183 447 DNA_S_dndC putative sulfurtransferase DndC. Member 93.97
PRK06850 507 hypothetical protein; Provisional 93.87
PF01902 218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 93.79
COG2102 223 Predicted ATPases of PP-loop superfamily [General 91.46
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 89.42
COG3969 407 Predicted phosphoadenosine phosphosulfate sulfotra 87.97
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-55  Score=403.64  Aligned_cols=220  Identities=56%  Similarity=0.870  Sum_probs=209.8

Q ss_pred             CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhhccCCccEEEEeeccCCCCCCCCCCCCCCcCCCCCCHHHHH
Q 027416            1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIA   80 (223)
Q Consensus         1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~eEi~   80 (223)
                      ++||++|||++||+|++|+|||+.+|++|...+|++.++.....|++|+|+|.+.........|++|+++.+++|+|||+
T Consensus       254 vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~e~~~hsPeeEia  333 (706)
T KOG2303|consen  254 VLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPIEWKYHSPEEEIA  333 (706)
T ss_pred             eeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCcccccCCcHHHhc
Confidence            68999999999999999999999999999998999877766678999999999986554455889999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchHhhhcce
Q 027416           81 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESREFAKRI  160 (223)
Q Consensus        81 ~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  160 (223)
                      .+++||||||||++|..||+|+||||+||+++|+||++||+++++++..|+++|+.|++++..+ ..++|.+|++||+++
T Consensus       334 ~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~~p~dp~~l~nri  412 (706)
T KOG2303|consen  334 LGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISYTPTDPADLCNRI  412 (706)
T ss_pred             cCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCcCCCCHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999877 689999999999999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCCCCCceeccc
Q 027416          161 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVTMV  221 (223)
Q Consensus       161 ~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~~p~~~~~~~  221 (223)
                      ++||||+++|||++|+.+|++||++||++|..++||.+|.+.++.|..++|+.|+|+++|-
T Consensus       413 ~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~gg  473 (706)
T KOG2303|consen  413 LYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGG  473 (706)
T ss_pred             hhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999984

>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B Back     alignment and domain information
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>PRK08557 hypothetical protein; Provisional Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent Back     alignment and domain information
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC Back     alignment and domain information
>PRK06850 hypothetical protein; Provisional Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3ilv_A 634 Crystal Structure Of A Glutamine-Dependent Nad(+) S 2e-07
2pz8_A 284 Nad+ Synthetase From Bacillus Anthracis With Amp-Cp 9e-05
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+) Synthetase From Cytophaga Hutchinsonii Length = 634 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 87  LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIA------NGNEQVKADAIR 140
           L+DY R+S + GF+L LSGGADSS+ A  V    +  +KE+         N +   D   
Sbjct: 294 LFDYXRKSRSKGFVLSLSGGADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPA 353
Query: 141 IGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS 200
           +       F  ++++       T +  + NS  ET   AK LA+ IG+   + S+D  + 
Sbjct: 354 LQHLP---FEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIE 410
Query: 201 AFLSLFQTLTGKRP 214
            + +  + +  +RP
Sbjct: 411 QYKATIENVI-ERP 423
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And Mg2+ Length = 284 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 2e-44
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 1e-37
3fiu_A 249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 2e-09
3p52_A 249 NH(3)-dependent NAD(+) synthetase; structural geno 5e-09
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 7e-08
1xng_A 268 NH(3)-dependent NAD(+) synthetase; amidotransferas 9e-08
1kqp_A 271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 1e-07
2e18_A 257 NH(3)-dependent NAD(+) synthetase; ligase, structu 8e-07
3dpi_A 285 NAD+ synthetase; ssgcid, decode, structural genomi 3e-06
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 8e-06
3q4g_A 279 NH(3)-dependent NAD(+) synthetase; structural geno 3e-05
1wxi_A 275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 6e-04
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
 Score =  155 bits (395), Expect = 2e-44
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 39/221 (17%)

Query: 1   MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNL 60
           +I +  + S ++V ++ A +  D+       ++                           
Sbjct: 244 LIQRNDRLSFKNVNLIYADIATDSAETPETVLTQD------------------------- 278

Query: 61  KMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMC 120
                          E E        L+DY+R+S + GF+L LSGGADSS+ A +V  M 
Sbjct: 279 -----------DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMI 327

Query: 121 QLVVKEIANGNEQVKADAIRIG---RYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 177
           +  +KE+       K++   +       +  F  ++++       T +  + NS  ET  
Sbjct: 328 RKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYT 387

Query: 178 RAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKV 218
            AK LA+ IG+   + S+D  +  + +  + +  +   ++ 
Sbjct: 388 SAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEK 428
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Length = 249 Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} Length = 249 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Length = 271 Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Length = 257 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} Length = 285 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} Length = 279 Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Length = 275 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 99.97
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 99.91
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 99.88
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.77
1wxi_A 275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 99.71
3q4g_A 279 NH(3)-dependent NAD(+) synthetase; structural geno 99.7
1kqp_A 271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 99.69
3p52_A 249 NH(3)-dependent NAD(+) synthetase; structural geno 99.65
3dpi_A 285 NAD+ synthetase; ssgcid, decode, structural genomi 99.65
1xng_A 268 NH(3)-dependent NAD(+) synthetase; amidotransferas 99.62
3fiu_A 249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 99.62
2e18_A 257 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.45
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 98.93
1gpm_A 525 GMP synthetase, XMP aminase; class I glutamine ami 98.81
2dpl_A 308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 98.78
2hma_A 376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 98.73
2pg3_A 232 Queuosine biosynthesis protein QUEC; YP_049261.1, 98.68
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 98.65
2ywb_A 503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 98.64
3bl5_A 219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 98.63
3uow_A 556 GMP synthetase; structural genomics consortium, SG 98.59
3tqi_A 527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 98.51
2der_A 380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 98.5
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 98.45
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 98.42
1vl2_A 421 Argininosuccinate synthase; TM1780, structural gen 98.42
3k32_A 203 Uncharacterized protein MJ0690; predicted subunit 98.4
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 98.28
1kor_A 400 Argininosuccinate synthetase; ligase, riken struct 98.25
2c5s_A 413 THII, probable thiamine biosynthesis protein THII; 98.23
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 98.17
1k92_A 455 Argininosuccinate synthase, argininosuccinate SY; 98.14
2nz2_A 413 Argininosuccinate synthase; amino-acid biosynthesi 98.06
3rjz_A 237 N-type ATP pyrophosphatase superfamily; structural 98.02
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 97.99
2o8v_A 252 Phosphoadenosine phosphosulfate reductase; disulfi 97.92
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 97.81
1zun_A 325 Sulfate adenylyltransferase subunit 2; beta barrel 97.59
2wsi_A 306 FAD synthetase; transferase, nucleotidyltransferas 97.56
2oq2_A 261 Phosphoadenosine phosphosulfate reductase; sulfate 97.51
1vbk_A307 Hypothetical protein PH1313; structural genomics, 97.42
2goy_A 275 Adenosine phosphosulfate reductase; iron sulfur cl 97.06
3fwk_A 308 FMN adenylyltransferase; FAD biosynthesis, alpha/b 95.8
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
Probab=99.97  E-value=6.9e-32  Score=260.31  Aligned_cols=181  Identities=24%  Similarity=0.359  Sum_probs=149.1

Q ss_pred             CceecCCCCCCCceEEEEEEehhhHHHHHhhcCchhhhhhccCCccEEEEeeccCCCCCCCCCCCCCCcCCCCCCHHHHH
Q 027416            1 MIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIA   80 (223)
Q Consensus         1 lla~~~rFs~~d~~v~~a~vDl~~~r~~R~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~eEi~   80 (223)
                      ++++.++|++++.++++|+||+++++..|.+.                      +              ..++.++||+.
T Consensus       244 vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~----------------------~--------------~~~~~~~~~~~  287 (634)
T 3ilv_A          244 LIQRNDRLSFKNVNLIYADIATDSAETPETVL----------------------T--------------QDDLEKEFEFW  287 (634)
T ss_dssp             EEEECCSSCSSSEEEEEEEEEC--------------------------------------------------CCHHHHHH
T ss_pred             EEEECCCCCCCCceEEEEEEEhHHhHHHHhcC----------------------C--------------CCCCCcHHHHH
Confidence            57899999987779999999999998777431                      0              01134589999


Q ss_pred             hhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH-----HhhccCCCCCCCchHh
Q 027416           81 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAI-----RIGRYANGEFPTESRE  155 (223)
Q Consensus        81 ~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~-----~~~~~~~~~~p~~~~~  155 (223)
                      .++++||||||+++|.++++||||||+|||++|+||+.||++|++++  |.++|+.++.     ++......+.|.++++
T Consensus       288 ~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (634)
T 3ilv_A          288 EATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPALQHLPFEEQAKK  365 (634)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSCSSCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--CchhhhhhhhcccccccccccccccccchhH
Confidence            99999999999999999999999999999999999999999999997  5688887775     2222222345667899


Q ss_pred             hhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhhHhhCCCCCceec
Q 027416          156 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKVT  219 (223)
Q Consensus       156 l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~~~~g~~p~~~~~  219 (223)
                      +|+..++|||||+.+|+..++++|+++|+.||++|++|+|+++++++.+.+...+|++|.|+.+
T Consensus       366 ~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~  429 (634)
T 3ilv_A          366 ITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKD  429 (634)
T ss_dssp             HHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTC
T ss_pred             hhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999988754
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1kqpa_ 271 c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacil 9e-14
d1wxia1 274 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase { 1e-09
d1xnga1255 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase { 2e-07
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.5 bits (161), Expect = 9e-14
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 74  SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQ 133
            P++EI      +L  Y++++GA GF+L +SGG DS     + G + QL V+ I      
Sbjct: 17  DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGD 71

Query: 134 VKADAIRI 141
            +  A+R+
Sbjct: 72  AQFIAVRL 79
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1xnga1 255 NH3-dependent NAD+-synthetase {Helicobacter pylori 99.73
d1kqpa_ 271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 99.7
d1wxia1 274 NH3-dependent NAD+-synthetase {Escherichia coli [T 99.55
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 99.09
d1jgta1 299 beta-Lactam synthetase {Streptomyces clavuligerus 98.86
d1q15a1 296 beta-Lactam synthetase {Pectobacterium carotovorum 98.51
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 98.15
d1ct9a1 324 Asparagine synthetase B, C-terminal domain {Escher 98.14
d2pg3a1 230 Queuosine biosynthesis protein QueC {Erwinia carot 98.14
d1ni5a1 227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 98.07
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 98.04
d2c5sa1 218 Thiamine biosynthesis protein ThiI, C-terminal dom 98.0
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 97.98
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 97.88
d1zuna1211 Sulfate adenylyltransferase subunit 2, CysD {Pseud 97.73
d1sura_215 Phosphoadenylyl sulphate (PAPS) reductase {Escheri 97.23
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 96.29
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 94.76
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Helicobacter pylori [TaxId: 210]

Probab=99.73  E-value=1.1e-17  Score=142.67  Aligned_cols=96  Identities=22%  Similarity=0.182  Sum_probs=83.1

Q ss_pred             CHHHHHhhHHHHHHHHHHHhCCCCeEEeccCCchHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHhhccCCCCCCCchH
Q 027416           75 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGNEQVKADAIRIGRYANGEFPTESR  154 (223)
Q Consensus        75 ~~eEi~~~~~~~L~dylr~s~~~g~vl~LSGG~DSs~~a~lv~~m~~~a~~~l~~g~~~~~~~~~~~~~~~~~~~p~~~~  154 (223)
                      ..+++...+..||++|++++|.++++||||||+|||++|+|+       .++               +++          
T Consensus         2 d~~~~~~~l~~~l~~~~~~~G~k~vvvglSGGVDSsv~A~L~-------~~a---------------~~~----------   49 (255)
T d1xnga1           2 DYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKV---------------FKE----------   49 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH---------------HGG----------
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHH---------------hhh----------
Confidence            357888999999999999999999999999999999998886       333               122          


Q ss_pred             hhhcceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHhh
Q 027416          155 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ  207 (223)
Q Consensus       155 ~l~~~~~~t~~m~~~~ss~~t~~~A~~LA~~lG~~~~~i~I~~~v~~~~~~~~  207 (223)
                           ++++++||+..+++++.+.|+.+|+.||++|.+++++.....+.+.+.
T Consensus        50 -----~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~~~~~~~~~~~~~~   97 (255)
T d1xnga1          50 -----NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFK   97 (255)
T ss_dssp             -----GEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCT
T ss_pred             -----hcchhcCcchhcchhhHHHHHHHHHHhhhcchhhhhHHHHhhhhhhcc
Confidence                 389999999999999999999999999999999999887776655543
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure