Citrus Sinensis ID: 027501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN
Secondary Structure (PSIPRED)
cccEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccccccEEEEEccccccEEEEEEEcccEEEEEccHHHHHHHHHHHHHccEEEEEEEcEEEEccEEEEEEEEEEccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHEEccccccccEEEEEEccEEEEEccHHHHHHHHHHHHHHHHcEEEEEEEEEEEccEEEEEEEEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccEEcccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtikrvlhwqpnvgtsvnSQILNEVSQCVESINGVKEGRWKATLTFYkpmlrdqslasefprdflgimvpecpnkyfFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEgfqyqlgdfqlrvgkvvpthsenlRGIVMEveylpissiEKSRQIMEEFLEIWQEALSkrtlpghfmpmepnfieyglsdhyssqHTAVQYATVMAQLIASVQSVQSMRN
Flexible Loop (DISEMBL)
mtikrvlhwqpnvgtsvnsqILNEVSQCVEsingvkegrWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPthsenlrgivMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN
Low Complexity Region (SEG)
MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN
Disordered region (IsUnstruct)
****RVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIAS*********
Disordered Region (DISOPRED)
MTIKRVLHWQPNVG*SVNSQILNEVSQCVESINGVKEGRWKATLTFYK**************DFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLI***********
Disordered Region (DISEMBL)
MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASV********
Disordered Region (DISPRO)
MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q6NPF4	219	Mediator of RNA polymeras	yes	no	0.986	1.0	0.730	1e-94
Q9M0S0	219	Mediator of RNA polymeras	no	no	0.972	0.986	0.652	8e-85
Q54FL3	195	Putative mediator of RNA	yes	no	0.756	0.861	0.299	3e-11
Q17LR9	219	Mediator of RNA polymeras	N/A	no	0.427	0.433	0.28	4e-06
Q7Q6Y4	218	Mediator of RNA polymeras	yes	no	0.427	0.435	0.27	2e-05
Q5ZKY9	211	Mediator of RNA polymeras	yes	no	0.481	0.507	0.297	0.0002
Q6NTV8	211	Mediator of RNA polymeras	N/A	no	0.599	0.630	0.251	0.0003

>sp|Q6NPF4|MD20A_ARATH Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana GN=MED20A PE=1 SV=1

 Score =  345 bits (886), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 194/219 (88%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K VLHWQPN G++V+SQILNE +QCVESINGVKEGRWKATL +YKPML+DQ+   EF
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61  PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+ 
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
           ++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+ 
Sbjct: 181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVRG 219

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0S0|MD20B_ARATH Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana GN=MED20B PE=3 SV=1

 Score =  313 bits (801), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 141/216 (65%), Positives = 185/216 (85%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K +LHWQPN G++ +SQILNEV+Q +ES+NGVKEG WKATL +YKPML+DQ+  +EF
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PR+F+GI +PE P+KY+FVIR+QRIV+EADS+IQ IME LQSYK +++  FEG +YQLGD
Sbjct: 61  PREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           F+LRVGKVVPTH+E +RG+VMEVEYLPISS+  ++++MEEFLEIWQEA+SKR+LPG F+ 
Sbjct: 121 FRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVN 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
            E NF ++GL D+Y+ QHTAV YA  MA L+A++Q+
Sbjct: 181 KELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).

Arabidopsis thaliana (taxid: 3702)

>sp|Q54FL3|MED20_DICDI Putative mediator of RNA polymerase II transcription subunit 20 OS=Dictyostelium discoideum GN=med20 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 29/197 (14%)

Query: 22  LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR 81
           L E+++ +E + G+K        + Y   + D S  +  PR+F  ++  E P K F V R
Sbjct: 13  LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDGS--NLIPREFHLLLYDEKPKKCFTVCR 70

Query: 82  TQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVM 141
               ++E D  + +I+EK  SYK R        +Y+LGDF +RVG +V      +RGI++
Sbjct: 71  DT--IVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV--FRTEIRGILV 126

Query: 142 EVEY----LPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPM-EP-----NFIEY-GL 190
           EVEY     P++S     +++ EF+             G+  P  EP     +F  Y  L
Sbjct: 127 EVEYTACSTPVTSPFNCTKLLSEFIN------------GNLGPFPEPIQTSFDFSAYPTL 174

Query: 191 SDHYSSQHTAVQYATVM 207
              YS  HT+ QY  + 
Sbjct: 175 PKSYSDLHTSYQYVNLF 191

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Dictyostelium discoideum (taxid: 44689)

>sp|Q17LR9|MED20_AEDAE Mediator of RNA polymerase II transcription subunit 20 OS=Aedes aegypti GN=MED20 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 82  TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
           T++I L  D     +M ++    + K +  +  +G +++ GDF +++G V  T S+N +G
Sbjct: 77  TKQIPLVTDGLFDLLMTRISPVYTSKKQTKIESKGPRFEFGDFLIKLGSV--TMSQNFKG 134

Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
           +++EVEY P        ++M EFL+ +  +    T+P +F
Sbjct: 135 VLVEVEYRPCLVASSCWELMREFLQGFLGSNVSNTIPAYF 174

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q7Q6Y4|MED20_ANOGA Mediator of RNA polymerase II transcription subunit 20 OS=Anopheles gambiae GN=MED20 PE=3 SV=6

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 82  TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
           T++I L  D     +M ++    + K +  +  +G +++ GDF +++G V  T S+N +G
Sbjct: 76  TKQIPLVTDGLFDLLMTRIAPAYTSKKQTKIESKGQRFEFGDFVIKLGSV--TMSQNFKG 133

Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
           +++EVEY P        ++M EFL+ +  +    ++P +F
Sbjct: 134 VLVEVEYRPCLVPGSCWELMREFLQGFLGSNVSNSMPAYF 173

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q5ZKY9|MED20_CHICK Mediator of RNA polymerase II transcription subunit 20 OS=Gallus gallus GN=MED20 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 86  VLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
            L AD+   T+M KL+ +      N     G +YQ  DF ++VG V  T   + RGI +E
Sbjct: 83  CLIADANFDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTV--TMGPSARGISVE 140

Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
           VEY P         ++ EF++         +  G   P  P+         YS   T VQ
Sbjct: 141 VEYCPCVIANDCWNLLMEFMQ---------SFMGSHTPGIPSVFGTKHDSIYSPADTMVQ 191

Query: 203 Y 203
           Y
Sbjct: 192 Y 192

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q6NTV8|MED20_XENLA Mediator of RNA polymerase II transcription subunit 20 OS=Xenopus laevis GN=med20 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 78  FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
           F +      L AD  +  +M KL+ +      N     G +YQ  DF +++G V  T  +
Sbjct: 76  FALFENGPCLVADLNLDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TVGQ 133

Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
           + RGI +EV+Y P +       +M EF++ +          G   P  P          Y
Sbjct: 134 SGRGITVEVDYCPCAVPGDCWNLMMEFMQSFM---------GSHAPSVPPVFSAKHDPLY 184

Query: 195 SSQHTAVQYATVMAQLIASVQSVQSMR 221
           +   T VQY  ++ ++     +V  MR
Sbjct: 185 TPADTMVQYMELLNKIRKQQVTVAGMR 211

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
224069122	221	predicted protein [Populus trichocarpa]	0.995	1.0	0.828	1e-108
225444764	222	PREDICTED: putative mediator of RNA poly	1.0	1.0	0.774	1e-103
297738577	223	unnamed protein product [Vitis vinifera]	1.0	0.995	0.771	1e-102
449446620	223	PREDICTED: mediator of RNA polymerase II	1.0	0.995	0.793	1e-102
255551861	221	conserved hypothetical protein [Ricinus	0.995	1.0	0.801	1e-101
147781153	242	hypothetical protein VITISV_017913 [Viti	0.977	0.896	0.779	1e-101
297822453	219	hypothetical protein ARALYDRAFT_481687 [	0.986	1.0	0.739	3e-95
30683816	219	TATA-binding related factor (TRF) of sub	0.986	1.0	0.730	6e-93
388517899	218	unknown [Lotus japonicus]	0.968	0.986	0.725	2e-90
359807578	218	uncharacterized protein LOC100814806 [Gl	0.968	0.986	0.688	2e-86

>gi|224069122|ref|XP_002326280.1| predicted protein [Populus trichocarpa] gi|222833473|gb|EEE71950.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/222 (82%), Positives = 207/222 (93%), Gaps = 1/222 (0%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K VLHWQPN GT+VN+QILNEV+QCVESINGVKEGRWKAT+T+YKP+LRDQS A E 
Sbjct: 1   MPLKWVLHWQPNAGTTVNTQILNEVTQCVESINGVKEGRWKATVTYYKPILRDQSQAPEL 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI +PE PNKY+F+IR QRIVLEADS+IQTIMEKLQSYK RVAL FEGFQYQLGD
Sbjct: 61  PRDFLGISLPEQPNKYYFIIRGQRIVLEADSSIQTIMEKLQSYKSRVALYFEGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           FQLRVGKV PTHS+NLRGI+MEVEYLP+SSI+KSRQ+MEEF++IWQEA+SKR+LPGHFM 
Sbjct: 121 FQLRVGKVTPTHSDNLRGIIMEVEYLPLSSIDKSRQVMEEFVDIWQEAISKRSLPGHFMH 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
           MEPNF+EYGLSDHYSSQHTAVQYATVMAQLIA+ QSVQ+ RN
Sbjct: 181 MEPNFVEYGLSDHYSSQHTAVQYATVMAQLIAT-QSVQAARN 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444764|ref|XP_002279553.1| PREDICTED: putative mediator of RNA polymerase II transcription subunit 20-like [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/222 (77%), Positives = 203/222 (91%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM RDQ++ +E+
Sbjct: 1   MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRDQAVPAEY 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLGD
Sbjct: 61  PRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           FQLRVGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM 
Sbjct: 121 FQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFMH 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
           +EPNF E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 181 IEPNFAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738577|emb|CBI27822.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/223 (77%), Positives = 203/223 (91%), Gaps = 1/223 (0%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLR-DQSLASE 59
           M +K V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM R DQ++ +E
Sbjct: 1   MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRADQAVPAE 60

Query: 60  FPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLG 119
           +PRDFLGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLG
Sbjct: 61  YPRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLG 120

Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
           DFQLRVGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM
Sbjct: 121 DFQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFM 180

Query: 180 PMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
            +EPNF E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 181 HIEPNFAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446620|ref|XP_004141069.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like [Cucumis sativus] gi|449488087|ref|XP_004157936.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like [Cucumis sativus]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/223 (79%), Positives = 201/223 (90%), Gaps = 1/223 (0%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQ-SLASE 59
           M +K VLHWQPN G++VNSQILNEVSQCVESI+GVK G+WKATLTFYKP+LRDQ S A+E
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 60  FPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLG 119
           FPRDFLGI +PE PNKY+ +IR QRIVLEAD TIQ IMEKLQSYK+RVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
           DFQLRVGKVVP +SENLRGIVME+EYLPISS+EKSRQ+MEEF ++WQEA+SK +LPG FM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFM 180

Query: 180 PMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
            +E NF EYGLSD+Y+SQHTAVQY  VMAQLIA+VQ+VQS RN
Sbjct: 181 HIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSARN 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551861|ref|XP_002516976.1| conserved hypothetical protein [Ricinus communis] gi|223544064|gb|EEF45590.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/222 (80%), Positives = 200/222 (90%), Gaps = 1/222 (0%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K VLHWQPN GT+VN+QILNEVSQCVESINGVKEGRWKA LT YKPMLRDQSL  EF
Sbjct: 1   MPLKWVLHWQPNAGTTVNTQILNEVSQCVESINGVKEGRWKAALTSYKPMLRDQSLTPEF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI +PE PNKY+F+IR QR+V+EADS+IQTIMEKLQSYK RVAL FEGFQYQLGD
Sbjct: 61  PRDFLGISLPEQPNKYYFMIRGQRLVVEADSSIQTIMEKLQSYKSRVALLFEGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           FQLRVGKVVP HSENLRGIVMEVEYLPISSIEK+R IMEEF++IWQEA+SKR+LPG FM 
Sbjct: 121 FQLRVGKVVPNHSENLRGIVMEVEYLPISSIEKARPIMEEFVDIWQEAISKRSLPGQFMH 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
           +E NF +YGL DHY+ QHTA+QYATV+AQLIA+ Q+VQ+ RN
Sbjct: 181 IETNFADYGLFDHYTPQHTALQYATVIAQLIAT-QTVQAARN 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781153|emb|CAN67376.1| hypothetical protein VITISV_017913 [Vitis vinifera]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/218 (77%), Positives = 200/218 (91%), Gaps = 1/218 (0%)

Query: 6   VLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLR-DQSLASEFPRDF 64
           V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM R DQ++ +E+PRDF
Sbjct: 25  VFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRADQAVPAEYPRDF 84

Query: 65  LGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLR 124
           LGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLGDFQLR
Sbjct: 85  LGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLGDFQLR 144

Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPN 184
           VGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM +EPN
Sbjct: 145 VGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFMHIEPN 204

Query: 185 FIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
           F E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 205 FAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822453|ref|XP_002879109.1| hypothetical protein ARALYDRAFT_481687 [Arabidopsis lyrata subsp. lyrata] gi|297324948|gb|EFH55368.1| hypothetical protein ARALYDRAFT_481687 [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 162/219 (73%), Positives = 198/219 (90%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K VLHWQPN G++V+SQILNEV+QCVESINGVKEGRWKATL +YKPMLRDQ+  SEF
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEVTQCVESINGVKEGRWKATLNYYKPMLRDQANQSEF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI + + PNKY+F+IR+QRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61  PRDFLGISLADQPNKYYFIIRSQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+ 
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
           ++ NF+E+GL D+Y+ QHTAV+YA VMA +IA+VQ+V+ 
Sbjct: 181 IDLNFVEFGLGDNYTPQHTAVRYALVMAHMIATVQAVRG 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683816|ref|NP_180390.2| TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana] gi|75127115|sp|Q6NPF4.1|MD20A_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 20a gi|38454106|gb|AAR20747.1| At2g28230 [Arabidopsis thaliana] gi|38604010|gb|AAR24748.1| At2g28230 [Arabidopsis thaliana] gi|330252999|gb|AEC08093.1| TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana]

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 194/219 (88%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +K VLHWQPN G++V+SQILNE +QCVESINGVKEGRWKATL +YKPML+DQ+   EF
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61  PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+ 
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
           ++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+ 
Sbjct: 181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVRG 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517899|gb|AFK47011.1| unknown [Lotus japonicus]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/215 (72%), Positives = 185/215 (86%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M I+ +LHWQP+ GT VNS  LNE+SQCVE+INGVK+GRWK+TLTFY+P LRDQS+A++F
Sbjct: 1   MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI + E P KY+F+IR  +IV+EADS+I TIMEKLQSYK +VALNFEG QY+LGD
Sbjct: 61  PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           FQLRV KVVP  +ENLRGI+ME+EYLPISS+EK R IMEEF+EIW+E LSK++LPGHFM 
Sbjct: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKPRPIMEEFIEIWREVLSKKSLPGHFMR 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
            EPNF EYGL D Y+ QHTAVQYA  +AQLIASVQ
Sbjct: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807578|ref|NP_001241412.1| uncharacterized protein LOC100814806 [Glycine max] gi|255647815|gb|ACU24367.1| unknown [Glycine max]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 186/215 (86%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M I+ +LHWQPN G+ VNSQ+LNE+SQCVES+NGVKEGR KA+LTFY+P LRDQS+  +F
Sbjct: 1   MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDF 60

Query: 61  PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
           PRDFLGI + E PNKY+F+IR Q+IVLEADS+I  IMEKLQSYK +VAL+FEG  Y+LGD
Sbjct: 61  PRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGD 120

Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
           FQ+RV KVVP+ +E+LRGI++E+EYLPISS+EKS+QI+EEF++IW+E +SK++L G FM 
Sbjct: 121 FQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMH 180

Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
            EPN+ EYGLSD+Y+SQHTAVQYA  +AQLI S Q
Sbjct: 181 TEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQ 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2062799	219	AT2G28230 [Arabidopsis thalian	0.981	0.995	0.733	8e-85
TAIR|locus:2122318	219	AT4G09070 [Arabidopsis thalian	0.972	0.986	0.652	2.4e-76
TAIR|locus:2057886	70	AT2G28020 "AT2G28020" [Arabido	0.301	0.957	0.602	6.7e-17
DICTYBASE|DDB_G0290781	195	med20 "putative mediator compl	0.779	0.887	0.305	7.1e-13

TAIR|locus:2062799 AT2G28230 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 160/218 (73%), Positives = 194/218 (88%)

Query:     1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
             M +K VLHWQPN G++V+SQILNE +QCVESINGVKEGRWKATL +YKPML+DQ+   EF
Sbjct:     1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60

Query:    61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
             PRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct:    61 PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120

Query:   121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
             F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+ 
Sbjct:   121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180

Query:   181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQ 218
             ++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+
Sbjct:   181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVR 218

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

TAIR|locus:2122318 AT4G09070 [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 141/216 (65%), Positives = 185/216 (85%)

Query:     1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
             M +K +LHWQPN G++ +SQILNEV+Q +ES+NGVKEG WKATL +YKPML+DQ+  +EF
Sbjct:     1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEF 60

Query:    61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
             PR+F+GI +PE P+KY+FVIR+QRIV+EADS+IQ IME LQSYK +++  FEG +YQLGD
Sbjct:    61 PREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGD 120

Query:   121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
             F+LRVGKVVPTH+E +RG+VMEVEYLPISS+  ++++MEEFLEIWQEA+SKR+LPG F+ 
Sbjct:   121 FRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVN 180

Query:   181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
              E NF ++GL D+Y+ QHTAV YA  MA L+A++Q+
Sbjct:   181 KELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

TAIR|locus:2057886 AT2G28020 "AT2G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 41/68 (60%), Positives = 56/68 (82%)

Query:   151 IEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ-YATVMAQ 209
             +E +R++MEEFLEIW EAL+KR+LPG F+  + NF E+GL D+Y+ QHTAV+ YA VMA 
Sbjct:     1 MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60

Query:   210 LIASVQSV 217
             +IA+VQ+V
Sbjct:    61 MIATVQAV 68

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0290781 med20 "putative mediator complex subunit 20" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 58/190 (30%), Positives = 93/190 (48%)

Query:    22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR 81
             L E+++ +E + G+K        + Y   + D S  +  PR+F  ++  E P K F V R
Sbjct:    13 LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDGS--NLIPREFHLLLYDEKPKKCFTVCR 70

Query:    82 TQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVM 141
                 ++E D  + +I+EK  SYK R        +Y+LGDF +RVG +V   +E +RGI++
Sbjct:    71 DT--IVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV-FRTE-IRGILV 126

Query:   142 EVEYL----PISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYG-LSDHYSS 196
             EVEY     P++S     +++ EF+      L     P   +    +F  Y  L   YS 
Sbjct:   127 EVEYTACSTPVTSPFNCTKLLSEFIN---GNLGPFPEP---IQTSFDFSAYPTLPKSYSD 180

Query:   197 QHTAVQYATV 206
              HT+ QY  +
Sbjct:   181 LHTSYQYVNL 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       222   0.00096  112 3  11 22  0.50    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.75u 0.22s 20.97t   Elapsed:  00:00:00
  Total cpu time:  20.75u 0.22s 20.97t   Elapsed:  00:00:00
  Start:  Fri May 10 19:16:05 2013   End:  Fri May 10 19:16:05 2013

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NPF4	MD20A_ARATH	No assigned EC number	0.7305	0.9864	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_280007 hypothetical protein (222 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam08612	197	pfam08612, Med20, TATA-binding related factor (TRF	8e-56

>gnl|CDD|219933 pfam08612, Med20, TATA-binding related factor (TRF) of subunit 20 of Mediator complex

 Score =  175 bits (447), Expect = 8e-56
 Identities = 69/214 (32%), Positives = 99/214 (46%), Gaps = 23/214 (10%)

Query: 1   MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
           M +  +   +     S  SQ L E+   +E++  VK GRW      Y+P     SL +  
Sbjct: 1   MGVTVIFFQKATPNGS-ASQTLTELHDRLENLGAVKRGRWSVECKTYRPTP--SSLPASQ 57

Query: 61  PRDFLGIMVPECPNKYFFVIRTQR-IVLEADSTIQTIMEKLQSY---KMRVALNFEGFQY 116
           P+    + + E PN  F +I       L ADS  Q +MEKLQS+   +  V     G  Y
Sbjct: 58  PKLLYVLSLSEHPNSTFSIINNTAITTLVADSFFQLLMEKLQSFWTQRQTVKGEGGGT-Y 116

Query: 117 QLGDFQLRVGKVVPTHSENLRGIVMEVEY--LPISSIEKSRQIMEEFLEIWQEALSKRTL 174
           +LGDF++RVG V  T     RGI++EVEY   P    EK R ++ EFL+ +    +K ++
Sbjct: 117 ELGDFRVRVGNVFQTT--TFRGILVEVEYRYDPCEEFEKCRALIREFLQKFGINGAKESI 174

Query: 175 PGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMA 208
           P              LSD Y    TA QY  ++ 
Sbjct: 175 PS--------VGPEKLSDLY---DTAYQYLEILN 197

This family of proteins is related to TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the preinitiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex. This Med20 subunit of Mediator is found in the non-essential part of the head. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG4309	217	consensus Transcription mediator-related factor [T	100.0
PF08612	225	Med20: TATA-binding related factor (TRF) of subuni	100.0
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.3
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	90.42

>KOG4309 consensus Transcription mediator-related factor [Transcription]

Probab=100.00  E-value=1.3e-58  Score=384.53  Aligned_cols=208  Identities=23%  Similarity=0.325  Sum_probs=186.8

Q ss_pred             CCceEEEEecCCCCCCchhhHHHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEE
Q 027501            1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVI   80 (222)
Q Consensus         1 M~v~~v~~w~~~~~~t~~~q~~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~   80 (222)
                      |||++|-..+-+.+-+ .+|+++.|+|+||+|||.+.|+|.|||++|+++++....  ..-|.+|++|+||+|.+.|.|+
T Consensus         1 mgvt~~~~mpv~egks-~~qt~~~l~r~Le~lGa~~~GtF~VDcetF~~~~~~~~g--~~g~~~~VmHnSeyP~STFSI~   77 (217)
T KOG4309|consen    1 MGVTCVSQMPVAEGKS-VQQTVELLTRKLEMLGAEKQGTFCVDCETFHTAASTLGG--QTGKLMYVMHNSEYPLSTFSIF   77 (217)
T ss_pred             CCceeecccCcccccc-HHHHHHHHHHHHHHhCccccCeEEEeccccCCCCCCCCC--CcCceEEEEecCCCCcceeEEe
Confidence            8999888877666666 599999999999999999999999999999998653211  1359999999999999999999


Q ss_pred             ecCc---eeeecCchHHHHHHHhhh-hhcceeEEEe--eeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHH
Q 027501           81 RTQR---IVLEADSTIQTIMEKLQS-YKMRVALNFE--GFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKS  154 (222)
Q Consensus        81 ~~~~---~~l~aD~~~~~il~kl~s-y~~r~~~~iE--G~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~  154 (222)
                      ++++   .+++||++||.||.||++ |+++++.|||  |.+|++|||.||+|+|  +|++++|||+|||||.||.++.+|
T Consensus        78 ~ngTfKks~~VaD~~FDLlm~Kl~~~f~s~ka~KIE~rG~ry~Y~Df~IkvGtv--Tmg~tvKGi~vEIEY~pcvI~~~C  155 (217)
T KOG4309|consen   78 ENGTFKKSCLVADTNFDLLMVKLKGFFQSAKASKIETRGTRYQYCDFLIKVGTV--TMGPTVKGISVEIEYGPCVIASDC  155 (217)
T ss_pred             cCCCcceeEEEecCCcceeehhhccceeeccccceeeccceeeecceEEEEcce--EeccccceEEEEEeeCCEEEhHHH
Confidence            9986   499999999999999999 8999999999  9999999999999999  799999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCccCCCccccccCCCCCCChhhHHHHHHHHHHHHHHhhc---cccccc
Q 027501          155 RQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ---SVQSMR  221 (222)
Q Consensus       155 ~~ll~EF~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~Ys~~dT~~QY~~~f~~~~~~~~---~~~~~~  221 (222)
                      |+||.||++++++.+ .+++|..|-+       .++|+.|+|+|||+||+++|.|+||-+|   +|||+|
T Consensus       156 w~M~~Eflqsflg~~-~p~aP~~fg~-------t~h~~~y~p~DTm~QYLe~fTk~RKkt~qqv~vag~~  217 (217)
T KOG4309|consen  156 WSMLLEFLQSFLGSH-TPGAPAVFGN-------TRHDAVYGPADTMVQYLELFTKIRKKTQQQVPVAGIR  217 (217)
T ss_pred             HHHHHHHHHHHhccc-CCCchHhhcC-------ccCccccCcHHHHHHHHHHHHHHHHhhhhhccccccC
Confidence            999999999998765 3666766643       5999999999999999999999996554   999987

>PF08612 Med20: TATA-binding related factor (TRF) of subunit 20 of Mediator complex; InterPro: IPR013921 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=6.1e-53  Score=365.88  Aligned_cols=199  Identities=32%  Similarity=0.516  Sum_probs=148.3

Q ss_pred             CCceEEEEecCCCCCCchhhHHHHHHHHHHhcCcEEEeeEEEEEEEcccccccc--cccCCCCceEEEEecCCCCceEEE
Q 027501            1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQ--SLASEFPRDFLGIMVPECPNKYFF   78 (222)
Q Consensus         1 M~v~~v~~w~~~~~~t~~~q~~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~--~~~~~~~r~~~~l~~se~P~~~f~   78 (222)
                      |||+||++|+|+|+++..+|++++++++|+++||++.|+|++||++||+++...  +++...+|.||+||+||+|+++|+
T Consensus         1 M~vt~v~~~~~~p~~~~~~qti~~~~~~l~~~~~~~~g~w~v~~k~yr~~~~~~p~~~~~~~~r~~~~L~~S~~p~~~f~   80 (225)
T PF08612_consen    1 MGVTVVFFQKATPEAKTASQTITELHDRLENLGATKQGRWSVECKTYRDTPSSLPASQPPSQPRYMYVLSLSEYPNSTFI   80 (225)
T ss_dssp             --EEEEEESS--TT------HHHHHHHHCTTTEEEEE--EEEEEEEEEE-SSS------SSS-SEEEEEEEESSSEEEEE
T ss_pred             CcEEEEEEECCCcccchhHHHHHHHHHHHHhcCCEEeeeEEEEEEEecCCCCCCCcccccccccEEEEEecccCCCcEEE
Confidence            999999999999999889999999999999999999999999999999987632  233457899999999999999999


Q ss_pred             EEecCce-----------------eeecCchHHHHHHHhhh-hhcceeEEEeeee-EeeeceEEEEEEeeeCCCCcceeE
Q 027501           79 VIRTQRI-----------------VLEADSTIQTIMEKLQS-YKMRVALNFEGFQ-YQLGDFQLRVGKVVPTHSENLRGI  139 (222)
Q Consensus        79 v~~~~~~-----------------~l~aD~~~~~il~kl~s-y~~r~~~~iEG~~-y~~GDF~VrvG~v~~~~~~~~rGi  139 (222)
                      ++++++.                 ++++|+.|+.||.||++ |+.|+++++||.. |++|||+||+|+|+  +++++|||
T Consensus        81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~i~~KL~~~w~~Rq~~kie~~~~YelgDf~VRvg~v~--~~~~~rGi  158 (225)
T PF08612_consen   81 IINNGPAKTTTNSQTNSHLMNGCPTLVADSFFDLIMSKLQSLWTQRQTIKIEGGGTYELGDFTVRVGNVF--QGQSFRGI  158 (225)
T ss_dssp             EETTEEEEEES-GGGHHHHHTTSS-S-B--HHHHHHHHSTTTEEEEEEEEEESEEEEEETTEEEEEEEEE--ETTEEEEE
T ss_pred             EEcCCCcccccccCCccceeccccccccChHHHHHHHHHHhhhhhcEEEEEeeeeEEEECCEEEEEEEEE--ECCCCcEE
Confidence            9977641                 88999999999999999 8999999999555 99999999999996  66799999


Q ss_pred             EEEEEE---eccccHHHHHHHHHHHHHHHHhhhccCCCCCCc-cCCCccccccCCCCCCChh-hHHHHHHHHHH
Q 027501          140 VMEVEY---LPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF-MPMEPNFIEYGLSDHYSSQ-HTAVQYATVMA  208 (222)
Q Consensus       140 lvEVEY---~Pc~~~~~~~~ll~EF~~~~~~~~~~~~~p~~~-~~~~p~~~~~~~~~~Ys~~-dT~~QY~~~f~  208 (222)
                      +|||||   .||++++.||+||+||++.+..       |+.- ....|++...++++.|++. |||+||+++|+
T Consensus       159 lvEVEy~~~~p~~~~~~~~~li~efl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~dta~QY~e~~~  225 (225)
T PF08612_consen  159 LVEVEYRGSDPCVSFEQCWELIREFLQSFGI-------PDAKESIFVPNLGPEKLDDLYTPGSDTAYQYMEIFN  225 (225)
T ss_dssp             EEEEEE---SSSTTHHHHHHHHHHHHHHTTS--------S-EEE-----SSSS---HH----HHHHHHHHHHH-
T ss_pred             EEEEEEccCCccccHHHHHHHHHHHHHHhCC-------CCCcccccCcccccccccccccchhhHHHHHHHHhC
Confidence            999999   9999999999999999999732       1111 1124777778999999998 99999999996

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Proteins in this entry are subunit Med20 of the Mediator complex, and is found in the non-essential part of the head []. and related to the TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the pre-initiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZS_C 3RJ1_M 2HZM_G.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.30  E-value=1.3e-14  Score=136.65  Aligned_cols=208  Identities=16%  Similarity=0.125  Sum_probs=172.3

Q ss_pred             CCceEEEEecCCCCCCchhhHHHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecC-CCCceEEEE
Q 027501            1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVP-ECPNKYFFV   79 (222)
Q Consensus         1 M~v~~v~~w~~~~~~t~~~q~~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~s-e~P~~~f~v   79 (222)
                      |.++|+.||.+++..+...++++.+....+.+.+++.+.|.--+.-|.+...++  ...+++.+-+.+.+ ..|.+.+..
T Consensus        83 ~~vS~~v~~~~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~--~~~~g~~t~G~Ses~l~~~k~~~~  160 (491)
T KOG1383|consen   83 GLASGVVYWGEPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAP--SDSCGCGTVGGSESGLAAKKSYRN  160 (491)
T ss_pred             CeeeEEEecCCcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCC--ccccCccccccchHHHHHHHHHHH
Confidence            568999999988888887777777666667788888888876555555554443  22578888888877 777776654


Q ss_pred             EecC--ceeeecCchHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHHHHH
Q 027501           80 IRTQ--RIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQI  157 (222)
Q Consensus        80 ~~~~--~~~l~aD~~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~~~l  157 (222)
                      .+..  +.....+..-..+++.+..|...-.+++++..|..|||.+++|.++....++.+|++.+++|.|-..+++...|
T Consensus       161 ~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l  240 (491)
T KOG1383|consen  161 RRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKL  240 (491)
T ss_pred             HHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHH
Confidence            5554  45677889999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCccC--CCccccccCCCCCCChhhHHHH--HHHHHHHH
Q 027501          158 MEEFLEIWQEALSKRTLPGHFMP--MEPNFIEYGLSDHYSSQHTAVQ--YATVMAQL  210 (222)
Q Consensus       158 l~EF~~~~~~~~~~~~~p~~~~~--~~p~~~~~~~~~~Ys~~dT~~Q--Y~~~f~~~  210 (222)
                      +++|++.|...+++++.+|.|+.  ...++.+++....|.+.+++.-  |--..+.+
T Consensus       241 ~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~  297 (491)
T KOG1383|consen  241 ADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGS  297 (491)
T ss_pred             HHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCc
Confidence            99999999988999999999997  5667777888888999998876  65444433

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=90.42  E-value=8.7  Score=31.90  Aligned_cols=131  Identities=14%  Similarity=0.104  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCc-----------eeeecC
Q 027501           22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQR-----------IVLEAD   90 (222)
Q Consensus        22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~-----------~~l~aD   90 (222)
                      .+.+.++|+++|+...+ ....-..|..++...-..   ......+....  ..+++-...+.           -+-++|
T Consensus        13 ~~~~~~~L~~~g~~~~~-~~~q~D~Yfd~p~~~l~~---~~~~LRiR~~~--~~~~lT~Kgp~~~~~~~~~~E~e~~v~d   86 (174)
T TIGR00318        13 KEKVVEKLKNKGFKFIK-KEFQHDIYFSNPCRDFAS---TDEALRIRKLT--GEKFVTYKGPKIDNESKTRKEIEFKIED   86 (174)
T ss_pred             HHHHHHHHHhcCccccc-ccceEEEeecCCCcchhh---CCcEEEEEEcC--CcEEEEEeCCccCCcceEEEEEEEEECC
Confidence            56788899999987666 555567777765421000   11111222110  11222222221           122233


Q ss_pred             -chHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEecc--ccHHHHHHHHHHHHHHH
Q 027501           91 -STIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPI--SSIEKSRQIMEEFLEIW  165 (222)
Q Consensus        91 -~~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc--~~~~~~~~ll~EF~~~~  165 (222)
                       ..+..||..|. |...-.++=.-..|.+|++.|.+-.|-     .+ |-.+|||...=  ...+.+.+-+.++++.+
T Consensus        87 ~~~~~~iL~~LG-~~~~~~v~K~R~~~~l~~~~i~lD~v~-----~l-G~FvEIE~~~~~~~~~~~~~~~i~~~~~~L  157 (174)
T TIGR00318        87 IENALQILKKLG-FKKVYEVIKKRRIYQTNELNVSIDDVE-----GL-GFFLEIEKIINNINDKDLALEEIFEIINQL  157 (174)
T ss_pred             HHHHHHHHHHCC-CeEEEEEEEEEEEEEECCEEEEEEccC-----CC-ccEEEEEEecCCccchHHHHHHHHHHHHHc
Confidence             55666777554 543222222255589999999998772     34 89999999743  56677777777777763

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2hzm_A	212	RNA polymerase II mediator complex subunit 20; bet	100.0
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	93.88
1yem_A	179	Hypothetical protein; structural genomics, southea	91.47
3n10_A	179	Adenylate cyclase 2; CYTH domain, antiparallel bar	86.66

>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A

Probab=100.00  E-value=1.2e-32  Score=234.29  Aligned_cols=184  Identities=15%  Similarity=0.209  Sum_probs=138.0

Q ss_pred             eEEEEecCCCCCCchhhHHHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecC
Q 027501            4 KRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQ   83 (222)
Q Consensus         4 ~~v~~w~~~~~~t~~~q~~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~   83 (222)
                      +.|++-+.+     ++|+++.++++|+++||++.|.|++||++||++...  .+....|.||++|+|++|.++| ++++.
T Consensus         6 ~avifv~ka-----tpqTIt~f~d~Lsn~la~~~G~ws~d~kty~~~~~s--~p~~~sk~lytl~~S~~p~st~-li~~~   77 (212)
T 2hzm_A            6 SAVIFVERA-----TPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKN--LPADVSKLMYSITFHHHGRQTV-LIKDN   77 (212)
T ss_dssp             EEEEEECSC-----CTTHHHHHHHHHGGGCCEECCCEEEEEEEEEECSCC--C----CCEEEEEEEESSSEEEE-EEETT
T ss_pred             eEEEEEecC-----ChhHHHHHHHHHHhhhhhhcCceEEEEEEecCCccc--CCCCCceEEEEEeccCCCceEE-EEeCC
Confidence            367777644     488999999999999999999999999999998652  1112479999999999999999 78871


Q ss_pred             -------------------ceeeecCchHHHHH-HHhhh-hhcceeEEEe-eeeEeeeceEEEEEEeeeCCCCcceeEEE
Q 027501           84 -------------------RIVLEADSTIQTIM-EKLQS-YKMRVALNFE-GFQYQLGDFQLRVGKVVPTHSENLRGIVM  141 (222)
Q Consensus        84 -------------------~~~l~aD~~~~~il-~kl~s-y~~r~~~~iE-G~~y~~GDF~VrvG~v~~~~~~~~rGilv  141 (222)
                                         ..++.+|.+||.|| .||++ |+.|++.|.| |.+|++|||+||+|+|  .+++++||++|
T Consensus        78 sa~v~~~~~~~ip~~~~~~G~~~~~~~~FD~ll~~KL~siwtqrq~iKge~G~~Y~~~df~VR~~Nv--f~~~~fKGlLi  155 (212)
T 2hzm_A           78 SAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDAGETLILDGLTVRLVNL--FSSTGFKGLLI  155 (212)
T ss_dssp             EEEEEECCGGGSCHHHHHTTSSCSCCCCHHHHHHHHSTTTEEEEEEEEEEEEEEEEETTEEEEEEEE--EETTEEEEEEE
T ss_pred             cceeecccccccchhhhcCCccccCCccHHHHHHHHHHHHHhHhhcccccCCceeEecCEEEEEeeE--EEcCcceeEEE
Confidence                               24788999999999 99999 9999999999 9999999999999999  58899999999


Q ss_pred             EEEEeccccHHHHHHHHHHHHHHHHhhhccCCCCCCccCCCccccccCCCCCCChhhHHHHHHHHHH
Q 027501          142 EVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMA  208 (222)
Q Consensus       142 EVEY~Pc~~~~~~~~ll~EF~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~Ys~~dT~~QY~~~f~  208 (222)
                      ||||.|-..-+.-.+-++++++.   +    .+|..=+  .-+....+..+.|  .|.+.||+++++
T Consensus       156 EiEy~~~~~~~~~~~~i~~~l~~---~----~~~~~~~--~~~~l~~~~~~~~--~dL~~Qy~~~L~  211 (212)
T 2hzm_A          156 ELQADEAGEFETKIAGIEGHLAE---I----RAKEYKT--SSDSLGPDTSNEI--CDLAYQYVRALE  211 (212)
T ss_dssp             EEEESCGGGHHHHHHHHHHHHHH---T----TCCCCEE--ECCCSSTTCCCHH--HHHHHHHHHHHT
T ss_pred             EEEecCcchhHHHHHHHHHHHHH---c----CCCccee--ehhhcCCcchhHH--HHHHHHHHHHhc
Confidence            99999922222222333333332   2    3444222  1111111222333  489999999863

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2

Probab=91.47  E-value=4.7  Score=32.51  Aligned_cols=126  Identities=17%  Similarity=0.265  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCc----------eeeecC-
Q 027501           22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQR----------IVLEAD-   90 (222)
Q Consensus        22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~----------~~l~aD-   90 (222)
                      .+.+.++|.++||...+... ....|..++...         ...|........+++-+..+.          .+-++| 
T Consensus        19 ~~~~~~~L~~lg~~~~~~~~-Q~d~Yfd~p~~~---------~LRIR~~~~~~~~~lT~K~p~~g~~k~~~E~e~~v~d~   88 (179)
T 1yem_A           19 LEDFLHTLNTFNPEFVRYEE-QEDVYFEVPRPK---------LLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDF   88 (179)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE-EEEEEECCCTTE---------EEEEEEETTTTEEEEEEEEECSSSSCEEEEEEEEESCH
T ss_pred             HHHHHHHHHhcCCccCcceE-EEEEEEcCCCCC---------EEEEEEEcCCCeEEEEEeccCCCCccceeEEEEEeCCH
Confidence            67889999999998777654 788888765321         111110011122222112111          011233 


Q ss_pred             chHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHHHHHHHHHHHHH
Q 027501           91 STIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIW  165 (222)
Q Consensus        91 ~~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~~~ll~EF~~~~  165 (222)
                      ..+..||..| +|...-.++=.-..|.+|++.|-+=.+.   +   -|..+|||+.- ..++.+...+.+|++.+
T Consensus        89 ~~~~~iL~~L-G~~~~~~i~K~R~~~~~~~~~i~lD~~~---~---lG~f~EIE~~~-~~~e~~~~~~~~ll~~L  155 (179)
T 1yem_A           89 EKAVEVFKRL-GFKIQATIKKKRWVYKLNGVTLEVNRVE---G---IGDFVDIEVIS-DSPEEAKEKIWEVAKML  155 (179)
T ss_dssp             HHHHHHHHHT-TCCEEEEEEEEEEEEEETTEEEEEEEET---T---TEEEEEEEEEC-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHC-CCcEEEEEEEEEEEEEECCEEEEEEecC---C---CCCEEEEEEec-CChHHHHHHHHHHHHHc
Confidence            2345556655 3554433333466688999999998882   2   58899999853 37788888899998875

>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A

Probab=86.66  E-value=10  Score=29.95  Aligned_cols=134  Identities=11%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCce-----eeecC-chHHH
Q 027501           22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRI-----VLEAD-STIQT   95 (222)
Q Consensus        22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~~-----~l~aD-~~~~~   95 (222)
                      .+.+.++|.++|+............|..++...-.   ..+....+..........+-..+++.     +-+.| ..+..
T Consensus        20 ~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~---~~~~~lRiR~~~~~~~~~lt~kg~~~~~e~e~~v~~~~~~~~   96 (179)
T 3n10_A           20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLA---KQQISMVLREMNPSGIRLWIVKGPGAERCEASNIEDVSKVQS   96 (179)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTG---GGTCEEEEEEEETTCCEEEEEECSSSSBEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhcCCccccceEEEEEEEEeCCChhHH---hCCceEEEEecCCCceEEEEEcCCccccceeeccCCHHHHHH
Confidence            45678889999998766666667788776542100   01222222221111112222233321     11122 23333


Q ss_pred             HHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEecc--ccHHHHHHHHHHHHHHH
Q 027501           96 IMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPI--SSIEKSRQIMEEFLEIW  165 (222)
Q Consensus        96 il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc--~~~~~~~~ll~EF~~~~  165 (222)
                      ++..+ +|...-.++..-..|.++++.|-+=.|.      .-|-.+|||..--  ..++.+.+.+.++++.+
T Consensus        97 ~l~~l-g~~~~~~~~k~R~~~~~~~~~v~lD~v~------~lG~f~EiE~e~~~~~~~~~~~~~~~~l~~~L  161 (179)
T 3n10_A           97 MLATL-GYHPAFTIEKQRSIYFVGKFHITVDHLT------GLGDFAEIAIMTDDATELDKLKAECRDFANTF  161 (179)
T ss_dssp             HHHHT-TCEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEESCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCeEEEEEEEEEEEEEECCEEEEEEecc------CCCcEEEEEEEeCCCccHHHHHHHHHHHHHHc
Confidence            44333 2666666666677899999999998883      2478899998632  45677888888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	93.09
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	83.3

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.09  E-value=1.2  Score=33.25  Aligned_cols=134  Identities=8%  Similarity=0.086  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCc------eeeecCchHHH
Q 027501           22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQR------IVLEADSTIQT   95 (222)
Q Consensus        22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~------~~l~aD~~~~~   95 (222)
                      .+.+.++|+.+|+.........+.+|..++...-.   ..+.-..+...+.-..+..-..++.      ..+.....+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~l~---~~~~~lR~R~~~~~~~~tl~~k~~~~~~e~e~~v~~~~~~~~   91 (174)
T d2acaa1          15 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLT---QQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQS   91 (174)
T ss_dssp             HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHH---HTTCEEEEEEEETTTEEEEEEECSSTTBEEEEEBSCHHHHHH
T ss_pred             HHHHHHHHHHcCCccccceEEEEEEEEECCCCchh---hCceeeEEeecCCCcEEEEEEcccCCCceEEEecCCHHHHHH
Confidence            46788899999998877777778888776541100   0111111111111112211111111      12222234455


Q ss_pred             HHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEecc--ccHHHHHHHHHHHHHHH
Q 027501           96 IMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPI--SSIEKSRQIMEEFLEIW  165 (222)
Q Consensus        96 il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc--~~~~~~~~ll~EF~~~~  165 (222)
                      |+..+. |...-.+.-+-..|.+||+.|-+=.+-      .-|-.+|||+.-=  ..++.+...|.+|++.+
T Consensus        92 il~~lg-~~~~~~~~k~R~~~~~~~~~v~lD~v~------~lg~f~EiE~~~~~~~~~e~~~~~i~~~~~~L  156 (174)
T d2acaa1          92 MLENMG-YEVIQCSKKIRSIFFVGEFHITLDFLD------GFGHFAEFAIMTDDETALARYRERLVALAQQF  156 (174)
T ss_dssp             HHHHTT-CEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEESCSGGGTTHHHHHHHHHHHT
T ss_pred             HHHhCC-CceEEEEEEEEEEEEECCEEEEEEEec------CCCcEEEEEEEeCCccchHHHHHHHHHHHHHc
Confidence            555443 555444555577799999999988872      1388999998732  45567788899998875

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.30  E-value=6.7  Score=28.70  Aligned_cols=125  Identities=16%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecC----------ceeeecC-c
Q 027501           23 NEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQ----------RIVLEAD-S   91 (222)
Q Consensus        23 ~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~----------~~~l~aD-~   91 (222)
                      +.+.++|.++||...+... ....|..++...         +..+........+..-...+          -.+-++| .
T Consensus        12 ~~~~~~L~~~ga~~~~~~~-~~d~Yfd~p~~~---------llrvR~~~~~~~~~lt~K~~~~~~~~~~~E~e~~v~~~~   81 (163)
T d1yema_          12 EDFLHTLNTFNPEFVRYEE-QEDVYFEVPRPK---------LLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFE   81 (163)
T ss_dssp             HHHHHHHHTTCCEEEEEEE-EEEEEECCCTTE---------EEEEEEETTTTEEEEEEEEECSSSSCEEEEEEEEESCHH
T ss_pred             HHHHHHHHhcCCcccceEE-EEEeEEccCChH---------HhhhhhhcCCceEEEEEeCccCCCCceEEEEEecccchH
Confidence            4578899999999999865 456666654421         11111111122222211111          0111222 2


Q ss_pred             hHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHHHHHHHHHHHHH
Q 027501           92 TIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIW  165 (222)
Q Consensus        92 ~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~~~ll~EF~~~~  165 (222)
                      .+..++..|. |...-.+.-.-..|.+||+.|-+=.+-      .-|-.+|||... ...+.+.+.+.++++.+
T Consensus        82 ~~~~~l~~lg-~~~~~~~~K~R~~y~~~~~~i~lD~v~------~lg~f~EiE~~~-~~~~~~~~~i~~l~~~L  147 (163)
T d1yema_          82 KAVEVFKRLG-FKIQATIKKKRWVYKLNGVTLEVNRVE------GIGDFVDIEVIS-DSPEEAKEKIWEVAKML  147 (163)
T ss_dssp             HHHHHHHHTT-CCEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEC-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcC-ceEEEEEEEEEEEEEECCEEEEEEeeC------CCCcEEEEEEEe-cChHHHHHHHHHHHHHc
Confidence            3444444443 655544555577899999999998772      238889999874 45567777777777764