Citrus Sinensis ID: 027552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MAEEAAKELTESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKALGGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSRN
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccEEEEEEEccccccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccHHccccccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHcccccEEEEEccccccccEEEEEEEcccccccccHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAEEAAKELTesnaaaedmdleggenggdanakrarddddggegngdvskkqkideDEKSVEEERLEKKEvvngsgrvklgpkefgssiEMFDYFYKFlhfwppnlnvnkYEHMVLLDLLkkghpepdkkigggiqafqvryhptyksrcffliredetaddfsfrkcvdhmlplpedmkvksdankalggggggkgrgggrgghghgkgghgrgrggksrn
Flexible Loop (DISEMBL)
MAEEAAKEltesnaaaedmdleggenggdanakrarddddggegngdvskkqkidedeksveeerlekkevvngsgrvklgpkefgsSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKALGgggggkgrgggrgghghgkgghgrgrggksrn
Low Complexity Region (SEG)
MAEEAAKELTESNAAAEDMDLEGGENggdanakrarddddggegngdVSKKQKIDedeksveeerlekkevvNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKALggggggkgrgggrgghghgkgghgrgrggkSRN
Disordered region (IsUnstruct)
************************************************************************************FGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML*************************************************
Disordered Region (DISOPRED)
*******************************************************************************LGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMK******************************************
Disordered Region (DISEMBL)
*************AAAEDMDLEGGEN****************************************EKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL*********************************
Disordered Region (DISPRO)
**************************************************************************SGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKS***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKALGGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q42463	224	Protein DCL, chloroplasti	N/A	no	0.265	0.263	0.433	1e-07

>sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
            +L  L   HPE DKKIG G+    V YHP ++ SRC F++R+D    DFS+ KC+  ++
Sbjct: 142 TILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLI 201

Has a function in the early stage of chloroplast development and palisade cell morphogenesis.
Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
225457413	235	PREDICTED: uncharacterized protein LOC10	0.837	0.791	0.607	4e-64
356508551	252	PREDICTED: uncharacterized protein LOC10	0.851	0.75	0.609	3e-63
356516804	252	PREDICTED: uncharacterized protein LOC10	0.851	0.75	0.580	7e-59
255547391	224	conserved hypothetical protein [Ricinus	0.801	0.794	0.653	2e-58
224131056	250	predicted protein [Populus trichocarpa]	0.797	0.708	0.577	3e-58
449477258	232	PREDICTED: uncharacterized protein LOC10	0.810	0.775	0.572	2e-55
351724155	206	uncharacterized protein LOC100305757 [Gl	0.779	0.839	0.578	2e-53
356565099	208	PREDICTED: uncharacterized protein LOC10	0.779	0.831	0.574	3e-52
297797213	203	hypothetical protein ARALYDRAFT_496421 [	0.734	0.802	0.569	2e-49
224123172	160	predicted protein [Populus trichocarpa]	0.716	0.993	0.586	6e-49

>gi|225457413|ref|XP_002284935.1| PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 127/209 (60%), Positives = 152/209 (72%), Gaps = 23/209 (11%)

Query: 1   MAEEAAKELTES-----NAAAEDMDLEGGE-------------NGGDANAKRARDDD-DG 41
           MAE    E  E+      A  +DMD+E  E               GD+N+KR R++  +G
Sbjct: 1   MAETVVSETPETVTERETANTQDMDVEAPEPSQPNGSDSADNVTNGDSNSKRGREEAGEG 60

Query: 42  GEGNGDVSKKQKIDEDEKSVEEERLEKKEV-VNGSGRVKLGPKEFGSSIEMFDYFYKFLH 100
            + N  V+KKQK+   EKSVEEERLEK E  V  +GR  LGPK FGSS+EMFD+F+KFLH
Sbjct: 61  EDANDAVTKKQKV---EKSVEEERLEKLEAEVVETGRFSLGPKTFGSSVEMFDHFFKFLH 117

Query: 101 FWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETA 160
           +WP NL+VNKYEHM+LLDLLKKGH EPDKKIGGGI AFQVRYHP +KSRCFF+IR+DE+ 
Sbjct: 118 YWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDDESV 177

Query: 161 DDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
           DDFSFRKCVDH+ PLPE+MK KS+ NKAL
Sbjct: 178 DDFSFRKCVDHISPLPENMKAKSEVNKAL 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508551|ref|XP_003523019.1| PREDICTED: uncharacterized protein LOC100804514 [Glycine max]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/215 (60%), Positives = 158/215 (73%), Gaps = 26/215 (12%)

Query: 1   MAEEAAKELTESNAAAE----DMDLEGGE---NGGDANAKRARDDDDGGEGNGDVSKKQK 53
           MAEEAA E+ + N AA     DMD+E  E   NG + N KRAR++++   G+ DVSKKQ+
Sbjct: 1   MAEEAALEVVDPNTAAAAAAVDMDVENVEAGGNGAEPNQKRAREEEEPQGGDDDVSKKQR 60

Query: 54  IDED-EKSVEEERLEKKEVVN------------------GSGRVKLGPKEFGSSIEMFDY 94
           +DE+ EKSVEE+RLEK++                      SG V LG K FGSS+EMF Y
Sbjct: 61  VDEENEKSVEEQRLEKRDEQEEEKGEEKEAEKEEEEEKEASGSVNLGFKSFGSSLEMFHY 120

Query: 95  FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 154
           FY FLH WP  LNVNKYEH++LL+LLK GH EPDKKIGGG++AFQVR HPT+KSRCFFLI
Sbjct: 121 FYNFLHTWPQYLNVNKYEHLMLLELLKNGHAEPDKKIGGGVRAFQVRKHPTFKSRCFFLI 180

Query: 155 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
           RED++ADDFSFRKCVDH+LPLPE+M +KSDANKAL
Sbjct: 181 REDDSADDFSFRKCVDHILPLPEEMHLKSDANKAL 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516804|ref|XP_003527083.1| PREDICTED: uncharacterized protein LOC100796421 [Glycine max]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 151/212 (71%), Gaps = 23/212 (10%)

Query: 1   MAEEAAKELTESNAAAE-------DMD---LEGGENGGDANAKRARDDDDGGEGNGDVSK 50
           MAEEAA ++ + N           DMD   +E G+NG + N KRAR++++    + DV K
Sbjct: 1   MAEEAAPKVVDPNTVVAAAAAAAVDMDVENIEAGDNGAEPNQKRAREEEEPLGDDDDVLK 60

Query: 51  KQKI-DEDEKSVEEERLEKKEVVNG------------SGRVKLGPKEFGSSIEMFDYFYK 97
           KQK+ +E E+SVEE+RLEK++                SG V LG K F SS EMF YFY 
Sbjct: 61  KQKVAEEKEQSVEEQRLEKRDEKEEKEAEKEEEEKEASGSVNLGFKSFVSSSEMFHYFYN 120

Query: 98  FLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIRED 157
           FLH WP  LNVNKYEH++LL+LLK GH EPDKKIGGG++AFQVR HPT+KSRCFFLIRED
Sbjct: 121 FLHTWPQYLNVNKYEHLMLLELLKNGHAEPDKKIGGGVRAFQVRKHPTFKSRCFFLIRED 180

Query: 158 ETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
           ++ADDFSFRKCVDH+LPLPE+M +K DANKAL
Sbjct: 181 DSADDFSFRKCVDHILPLPEEMHLKFDANKAL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547391|ref|XP_002514753.1| conserved hypothetical protein [Ricinus communis] gi|223546357|gb|EEF47859.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/199 (65%), Positives = 149/199 (74%), Gaps = 21/199 (10%)

Query: 1   MAEEAAKELTESN-----AAAEDMDL--EGGENGGDANAKRARDDDDGGEGNGDVSKKQK 53
           MAEE A E T++N     +  EDMD+  E   NG    AKR RD ++  + + DVSKKQK
Sbjct: 1   MAEEKATEPTQANQERVDSTTEDMDVAEESAANG----AKRVRDSEEE-QNDDDVSKKQK 55

Query: 54  IDEDEKSVEEERLEKKEVVNG------SGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLN 107
           +D   KSVEEERLEK E   G      S  V LGPK FGSS+EMFDYFY  LH+WPPNL 
Sbjct: 56  VD---KSVEEERLEKLEEGEGEEDKEESVPVSLGPKSFGSSVEMFDYFYNLLHYWPPNLT 112

Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRK 167
           VNKYEHMVLL+LLKKGH +P+KKIGGGIQAFQVRYHP +KSRCFFLIR+D+T DDFSFRK
Sbjct: 113 VNKYEHMVLLELLKKGHSDPEKKIGGGIQAFQVRYHPMWKSRCFFLIRDDDTMDDFSFRK 172

Query: 168 CVDHMLPLPEDMKVKSDAN 186
           CVD +LPLPEDMK+KSD N
Sbjct: 173 CVDKILPLPEDMKIKSDGN 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131056|ref|XP_002328442.1| predicted protein [Populus trichocarpa] gi|222838157|gb|EEE76522.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/220 (57%), Positives = 146/220 (66%), Gaps = 43/220 (19%)

Query: 1   MAEEAAKELTESN-----AAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKID 55
           MAEE   E  E+N      A E+MD+   E+     AKRAR+ ++  E N DV KKQK+D
Sbjct: 1   MAEEIVAEAIEANLERADTATEEMDM--VEDVAANGAKRAREGEE--EDNEDVEKKQKVD 56

Query: 56  EDEKSVEEERLEKKEVVN-------------------------------GSGRVKLGPKE 84
              KSVEEERLEK E                                   SG V+LG K 
Sbjct: 57  ---KSVEEERLEKLEGEGTGEGEEKKEEERPDKLEGEGTGEGEEKKEKENSGPVRLGLKS 113

Query: 85  FGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHP 144
           FGS++EMFDYFY FLH+WPPNLNVNKYE MVLLDLLK+GH EPDKKIGGGIQ FQVR+HP
Sbjct: 114 FGSAVEMFDYFYNFLHYWPPNLNVNKYEQMVLLDLLKRGHTEPDKKIGGGIQTFQVRFHP 173

Query: 145 TYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSD 184
            +KSRCFFLIR+DE+ DDFSFRKCVDH+LPLPEDMK+KSD
Sbjct: 174 MFKSRCFFLIRDDESVDDFSFRKCVDHILPLPEDMKIKSD 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477258|ref|XP_004154974.1| PREDICTED: uncharacterized protein LOC101228008 [Cucumis sativus]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/215 (57%), Positives = 147/215 (68%), Gaps = 35/215 (16%)

Query: 1   MAEEAAKELTE--SNAAAEDMDLEGGEN----------------GGDANAKRARDDD-DG 41
           MAEE   +L    +N+  EDM+LE  E                  GDA +KR R++  D 
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60

Query: 42  GEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGR-------VKLGPKEFGSSIEMFDY 94
           G  +G   KKQKI   EKSVEEERLEK   + G G+       V LGPK F SS+E+FDY
Sbjct: 61  GVADG---KKQKI---EKSVEEERLEK---LGGDGKCEEEPVPVSLGPKSFRSSVELFDY 111

Query: 95  FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 154
           FYK LH WP NLNVN+YE MVL+DLLKKGH EP+KKIG GI +FQ+R+HP +KS+CFFLI
Sbjct: 112 FYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLI 171

Query: 155 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
           REDE+ADDFSFRKCVDH+LPLPE+ K K DAN+AL
Sbjct: 172 REDESADDFSFRKCVDHILPLPENFKGKFDANRAL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724155|ref|NP_001236280.1| uncharacterized protein LOC100305757 [Glycine max] gi|255626533|gb|ACU13611.1| unknown [Glycine max]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 138/197 (70%), Gaps = 24/197 (12%)

Query: 1   MAEEAAKEL-----TESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKID 55
           MAE  A EL     T +NAAA D+ ++G E    +N KR R+D D  E    VSKKQK+D
Sbjct: 3   MAEATASELEIVEPTTTNAAAADVAVDGVE----SNLKRTREDSDDEEDG--VSKKQKVD 56

Query: 56  EDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMV 115
            +EK               SG VKLG K F SS+EMFDYFY  LH WP  LN+N+YEHM+
Sbjct: 57  AEEK-------------KASGPVKLGFKSFASSVEMFDYFYNLLHAWPAYLNLNQYEHMM 103

Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPL 175
           LL+LLK GH EPD KIGGGI+ FQVR HP +KSRCFFL+R+DE+ DDFSFRKCVDH+LPL
Sbjct: 104 LLELLKNGHTEPDTKIGGGIRVFQVRKHPMWKSRCFFLVRDDESVDDFSFRKCVDHILPL 163

Query: 176 PEDMKVKSDANKALGGG 192
           P++M+V+ DAN+ALGG 
Sbjct: 164 PQEMQVRPDANRALGGA 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565099|ref|XP_003550782.1| PREDICTED: uncharacterized protein LOC100810172 [Glycine max]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 130/195 (66%), Gaps = 22/195 (11%)

Query: 1   MAEEAAKE---LTESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDED 57
           MAE  A E   +  +  AA D       +G D+N KR R D D  E    VSKK+K+DE+
Sbjct: 1   MAEATASEPEIVEPTTMAAADTAF----DGVDSNQKRTRVDSDDEEDG--VSKKRKVDEE 54

Query: 58  EKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLL 117
           EK               SG VKLG K F SS+EMFDYFY  LH WPP  N+N+YEHM+LL
Sbjct: 55  EK-------------EPSGPVKLGFKSFASSLEMFDYFYNLLHAWPPFQNLNQYEHMMLL 101

Query: 118 DLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPE 177
           +LLK GH EPD KIGGGI  FQVR HP +KSRCFFL+RE E+ DDFSF KCVDH+LPLPE
Sbjct: 102 ELLKNGHTEPDTKIGGGICVFQVRKHPMWKSRCFFLVREGESVDDFSFHKCVDHILPLPE 161

Query: 178 DMKVKSDANKALGGG 192
           +M+VK DAN ALGGG
Sbjct: 162 EMQVKPDANMALGGG 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797213|ref|XP_002866491.1| hypothetical protein ARALYDRAFT_496421 [Arabidopsis lyrata subsp. lyrata] gi|297312326|gb|EFH42750.1| hypothetical protein ARALYDRAFT_496421 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/186 (56%), Positives = 132/186 (70%), Gaps = 23/186 (12%)

Query: 1   MAEEAAKELTESNAAAE------DMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKI 54
           MAE+  +E+ +S +A        DM++EG     +   ++   ++   E NG  SKKQK+
Sbjct: 1   MAEQ--QEILDSVSAQVNPDQKVDMEVEGVAPKAETGDEKREREETEEEENGGESKKQKV 58

Query: 55  DEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHM 114
            E+EKS               G VKLGPKEF +S+ MFDYF KFLHFWP +L+VNKYEHM
Sbjct: 59  AEEEKS---------------GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHM 103

Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
           VLLDL+KKGH EP+KKIGGGI+ FQVR HP +KSRCFFL+RED+TADDFSFRKCVDH+LP
Sbjct: 104 VLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDHILP 163

Query: 175 LPEDMK 180
           LPE+MK
Sbjct: 164 LPENMK 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123172|ref|XP_002319012.1| predicted protein [Populus trichocarpa] gi|222857388|gb|EEE94935.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 126/167 (75%), Gaps = 8/167 (4%)

Query: 56  EDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMV 115
           E+E+ V  ++++K+E V   G V+LGPK F S++EMFD+FY FLHFWPPNLNVNK+EHMV
Sbjct: 2   EEEQFVRFKKMKKQEEV---GPVRLGPKTFVSAVEMFDFFYNFLHFWPPNLNVNKFEHMV 58

Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPL 175
           L++LL + H EP+KKIG GIQAFQ+R+ P +K+RC FLI +DE  DDFSF K  D++LPL
Sbjct: 59  LVELLMQDHLEPEKKIGCGIQAFQLRFRPMWKTRCIFLIWDDEFVDDFSFWKRTDNILPL 118

Query: 176 PEDMKVKSDANKALGGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSRN 222
           PEDM++KSDA+ + GGG   K +GGG        G H  GRGGKSRN
Sbjct: 119 PEDMRIKSDASLSSGGGKSRKRKGGGV-----RIGEHNHGRGGKSRN 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2154089	202	AT5G62440 "AT5G62440" [Arabido	0.477	0.524	0.792	7.1e-45
TAIR|locus:504956149	219	AT1G45230 "AT1G45230" [Arabido	0.279	0.283	0.406	3.9e-09
TAIR|locus:2075190	207	AT3G46630 "AT3G46630" [Arabido	0.261	0.280	0.355	8.2e-05
TAIR|locus:2061151	1976	NRPD1B "nuclear RNA polymerase	0.346	0.038	0.287	0.00036

TAIR|locus:2154089 AT5G62440 "AT5G62440" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 84/106 (79%), Positives = 96/106 (90%)

Query:    75 SGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGG 134
             SG VKLGPKEF +S+ MFDYF KFLHFWP +L+VNKYEHMVLLDL+KKGH EP+KKIGGG
Sbjct:    64 SGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGG 123

Query:   135 IQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMK 180
             I+ FQVR HP +KSRCFFL+RED+TADDFSFRKCVD +LPLPE+MK
Sbjct:   124 IKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0017126 "nucleologenesis" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0000741 "karyogamy" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:504956149 AT1G45230 "AT1G45230" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query:   112 EH-MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKS-RCFFLIREDETADDFSFRKCV 169
             EH   ++++L   HPE +KKIG GI    V +HP ++S RC F++R+D    DFS+ KC+
Sbjct:   133 EHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCI 192

Query:   170 DHML 173
               ++
Sbjct:   193 KGLI 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2075190 AT3G46630 "AT3G46630" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query:   112 EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
             +  ++++ L   HP    KIG G+    V  HP ++ SRC F++R D    DFS++KC+
Sbjct:   124 DEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2061151 NRPD1B "nuclear RNA polymerase D1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00036, P = 0.00036
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query:    97 KFLH--FWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFL 153
             K +H   +P    ++  +   +L+ +   HP+ + K+G G+    V  H  +  SRCFF+
Sbjct:  1752 KIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFV 1811

Query:   154 IREDETADDFSFRKCVDHML 173
             +  D    DFS+RK +++ L
Sbjct:  1812 VSTDGAKQDFSYRKSLNNYL 1831


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       154   0.00088  105 3  11 22  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  143 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.33u 0.24s 12.57t   Elapsed:  00:00:01
  Total cpu time:  12.33u 0.24s 12.57t   Elapsed:  00:00:01
  Start:  Fri May 10 22:21:09 2013   End:  Fri May 10 22:21:10 2013

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI

GO:0006306 "DNA methylation" evidence=RCA;IMP

GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IDA;IPI

GO:0030880 "RNA polymerase complex" evidence=IPI

GO:0035194 "posttranscriptional gene silencing by RNA" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0030422 "production of siRNA involved in RNA interference" evidence=IGI;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam11523	76	pfam11523, DUF3223, Protein of unknown function (D	5e-27
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	6e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003

>gnl|CDD|221127 pfam11523, DUF3223, Protein of unknown function (DUF3223)

 Score = 98.1 bits (245), Expect = 5e-27
 Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 95  FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFL 153
           F   LH +     ++  +   LL+ L + HP+ ++KIG GI  F+VR HP   KSRCFF+
Sbjct: 1   FKAILHRYDDGDRLSDEDEKTLLEALLEYHPDAEEKIGAGIDHFEVRTHPEGGKSRCFFV 60

Query: 154 IREDETADDFSFRKCV 169
           +R D T++DFS+RKC+
Sbjct: 61  VRTDGTSEDFSYRKCI 76

This family of proteins has no known function. Length = 76

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/31 (70%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 190 GGGGGGKGRGGGRGG-HGHGKGGHGRGRGGK 219
           GGG GG GRGGGRGG  G G+GG G GRGG 
Sbjct: 19  GGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 190 GGGGGGKGRGGGRGGHGHGKGGHGRGRGGK 219
            GGG G GRG GRGG G G+GG G G  GK
Sbjct: 27  RGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 18/30 (60%), Positives = 18/30 (60%)

Query: 190 GGGGGGKGRGGGRGGHGHGKGGHGRGRGGK 219
           G GGGG G  GG G  G   GG GRGRGG 
Sbjct: 13  GRGGGGGGGRGGGGRGGGRGGGRGRGRGGG 42

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 190 GGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSRN 222
           GG GGG+G G GRG  G G G  G G GG  + 
Sbjct: 25  GGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKV 57

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 189 LGGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSR 221
             GGG G GRGGGRGG G G  G G   GG+  
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGG 33

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 17/29 (58%), Positives = 17/29 (58%)

Query: 190 GGGGGGKGRGGGRGGHGHGKGGHGRGRGG 218
            GGGG  G  GG  G G G GG GRG GG
Sbjct: 22  RGGGGRGGGRGGGRGRGRGGGGGGRGGGG 50

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF11523	76	DUF3223: Protein of unknown function (DUF3223); In	99.97
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	96.37
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	95.22
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	89.91
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	89.03
COG4907	595	Predicted membrane protein [Function unknown]	88.66
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	88.03
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	86.08
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	85.03
PF12764	104	Gly-rich_Ago1: Glycine-rich region of argonaut; In	82.22
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	80.7
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	80.55

>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function

Probab=99.97  E-value=2e-32  Score=204.44  Aligned_cols=74  Identities=47%  Similarity=0.910  Sum_probs=61.3

Q ss_pred             HHHhhhcCCCCCCcChhh-HHHHHHHHhhCCCCcccccCCCceeEEeeeCCCCC-cceeEEEecCCCcccccHHHHh
Q 027552           95 FYKFLHFWPPNLNVNKYE-HMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV  169 (222)
Q Consensus        95 Fr~IL~~y~~g~~L~e~D-~~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~~-sRCFfVvR~DGt~eDFSY~KCi  169 (222)
                      |+.|||+|++++.|+++| +.+|+.|| .|||+++.|||+||++|+|++||.|. ||||||||+|||.+||||+|||
T Consensus         1 ~k~iL~~y~~g~~l~~~d~~~~l~~ll-~~HP~~~~KiG~Gi~~i~V~~hp~~~~srCF~vvR~DGs~~DFSy~KCi   76 (76)
T PF11523_consen    1 FKRILHRYPDGERLSEEDEKSVLEALL-KYHPEAEEKIGCGIDHIMVRKHPEFKDSRCFFVVRTDGSEEDFSYRKCI   76 (76)
T ss_dssp             HHHHHHHS-TTEE--HHH-HHHHHHHH-HTSTTHHHHHTT-EEEEEEEESSSS---EEEEEEETTS-EEE--GGGSS
T ss_pred             ChhHHhhCCCcCCcCHHHHHHHHHHHH-HhCCcHHHhhcCCeeeEEEeecCCCCcceEEEEEEeCCCeeeeEhhhhC
Confidence            789999999999999998 67777777 59999999999999999999999997 9999999999999999999997

; PDB: 2K0M_A.

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=96.37  E-value=0.0033  Score=59.91  Aligned_cols=24  Identities=63%  Similarity=1.282  Sum_probs=12.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
Q 027552          194 GGKGRGGGRGGHGHGKGGHGRGRGG  218 (222)
Q Consensus       194 g~~~~~~~~~~~~~~~~~~~~~~~~  218 (222)
                      ||+.++|||+|+|||+| +|+|||+
T Consensus       436 gggr~gggr~gggrgrg-ggggrg~  459 (465)
T KOG3973|consen  436 GGGRDGGGRDGGGRGRG-GGGGRGG  459 (465)
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCcc
Confidence            33334466666666554 3355544

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=95.22  E-value=0.018  Score=55.05  Aligned_cols=16  Identities=56%  Similarity=1.168  Sum_probs=8.0

Q ss_pred             CCCCCCCCCCCCCCCC
Q 027552          198 RGGGRGGHGHGKGGHG  213 (222)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (222)
                      .+|||+|+||++||||
T Consensus       435 ~gggr~gggr~gggrg  450 (465)
T KOG3973|consen  435 DGGGRDGGGRDGGGRG  450 (465)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            4455555555554444

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=89.91  E-value=0.34  Score=51.48  Aligned_cols=6  Identities=33%  Similarity=1.027  Sum_probs=2.6

Q ss_pred             HHHHHh
Q 027552          116 LLDLLK  121 (222)
Q Consensus       116 L~eLL~  121 (222)
                      |+.++.
T Consensus      1129 llnmiR 1134 (1282)
T KOG0921|consen 1129 LLNMIR 1134 (1282)
T ss_pred             HHHHHH
Confidence            444443

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=89.03  E-value=0.56  Score=44.43  Aligned_cols=15  Identities=20%  Similarity=0.051  Sum_probs=8.4

Q ss_pred             CcChhhHHHHHHHHh
Q 027552          107 NVNKYEHMVLLDLLK  121 (222)
Q Consensus       107 ~L~e~D~~vL~eLL~  121 (222)
                      .++..+...+++.|.
T Consensus       278 ~~~~~~R~~~l~~F~  292 (456)
T PRK10590        278 NKSQGARTRALADFK  292 (456)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            345555555666664

>COG4907 Predicted membrane protein [Function unknown]

Probab=88.66  E-value=0.39  Score=47.64  Aligned_cols=15  Identities=0%  Similarity=0.184  Sum_probs=6.6

Q ss_pred             HHHHhhhcCCCchhh
Q 027552          165 FRKCVDHMLPLPEDM  179 (222)
Q Consensus       165 Y~KCi~~~~p~~~~~  179 (222)
                      |.....++-+.++++
T Consensus       553 ysr~~~~~~raysa~  567 (595)
T COG4907         553 YSRSFNNLNRAYSAI  567 (595)
T ss_pred             hhhhhcccchhhhcc
Confidence            444444444444443

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=88.03  E-value=0.5  Score=42.24  Aligned_cols=24  Identities=50%  Similarity=0.828  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q 027552          198 RGGGRGGHGHGKGGHGRGRGGKSR  221 (222)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~  221 (222)
                      ++|+++|+|+|++|+|+.||+.+|
T Consensus        89 ~~G~y~gggrgGgg~gg~rgppsr  112 (241)
T KOG0105|consen   89 RRGSYSGGGRGGGGGGGRRGPPSR  112 (241)
T ss_pred             cccccCCCCCCCCCCCcccCCccc
Confidence            344455555666666666776665

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=86.08  E-value=0.95  Score=43.91  Aligned_cols=20  Identities=40%  Similarity=0.610  Sum_probs=9.5

Q ss_pred             EEeeeCCCCCcceeEEE-ecCC
Q 027552          138 FQVRYHPTYKSRCFFLI-REDE  158 (222)
Q Consensus       138 i~V~~hp~~~sRCFfVv-R~DG  158 (222)
                      |+|+. |.-...||-.| ..|.
T Consensus       320 I~vr~-~~~~~~~fgFV~f~~~  340 (419)
T KOG0116|consen  320 IQVRS-PGGKNPCFGFVEFENA  340 (419)
T ss_pred             eEEec-cCCCcCceEEEEEeec
Confidence            44444 33333388544 4443

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=85.03  E-value=0.96  Score=43.89  Aligned_cols=8  Identities=25%  Similarity=0.372  Sum_probs=5.0

Q ss_pred             EEeeeCCC
Q 027552          138 FQVRYHPT  145 (222)
Q Consensus       138 i~V~~hp~  145 (222)
                      |.|..=|.
T Consensus       291 i~V~nlP~  298 (419)
T KOG0116|consen  291 IFVKNLPP  298 (419)
T ss_pred             eEeecCCC
Confidence            77776554

>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins

Probab=82.22  E-value=1.7  Score=34.92  Aligned_cols=22  Identities=50%  Similarity=0.955  Sum_probs=10.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 027552          191 GGGGGKGRGGGRGGHGHGKGGH  212 (222)
Q Consensus       191 ~~~g~~~~~~~~~~~~~~~~~~  212 (222)
                      ||+|+..-.|||++.|+|++|+
T Consensus         9 rGRGgp~~qgG~~~yGggrgg~   30 (104)
T PF12764_consen    9 RGRGGPPQQGGRPGYGGGRGGG   30 (104)
T ss_pred             cCCCCCcccCCCCCCCCCCCCC
Confidence            3444444445555554444433

Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=80.70  E-value=14  Score=34.73  Aligned_cols=16  Identities=19%  Similarity=0.175  Sum_probs=11.6

Q ss_pred             CcccCCHHHHHHHHHH
Q 027552           82 PKEFGSSIEMFDYFYK   97 (222)
Q Consensus        82 ~k~F~S~~ea~~yFr~   97 (222)
                      -.+|.+..+|...+..
T Consensus       153 FVeF~~~e~A~~Ai~~  168 (346)
T TIGR01659       153 FVDFGSEADSQRAIKN  168 (346)
T ss_pred             EEEEccHHHHHHHHHH
Confidence            3568888888877754

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=80.55  E-value=2.2  Score=40.43  Aligned_cols=13  Identities=15%  Similarity=0.511  Sum_probs=7.1

Q ss_pred             ccccHHHHhhhcC
Q 027552          161 DDFSFRKCVDHML  173 (222)
Q Consensus       161 eDFSY~KCi~~~~  173 (222)
                      .|..+.+.|..++
T Consensus       352 ~d~~~~~~ie~~l  364 (456)
T PRK10590        352 DEHKLLRDIEKLL  364 (456)
T ss_pred             HHHHHHHHHHHHh
Confidence            3555556666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2k0m_A	104	Solution Nmr Structure Of The Uncharacterized Prote		5e-08

>pdb|2K0M|A Chain A, Solution Nmr Structure Of The Uncharacterized Protein From Rhodospirillum Rubrum Gene Locus Rru_a0810. Northeast Structural Genomics Target Rrr43 Length = 104

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 78  VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
           +++   EF    +   +    L+ + P   V+  +   L++ LK+ HP+   KIG G++ 
Sbjct: 7   IEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR-HPDATSKIGPGVRN 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
           F+VR    Y ++CF+++R D + + FS++KCV
Sbjct: 66  FEVR-SADYGTQCFWILRTDGSEERFSYKKCV 96
  Database: pdbaa

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2k0m_A	104	Uncharacterized protein; structural genomics, unkn	100.0
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	90.0
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	88.49
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	87.4
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	80.21

>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}

Probab=100.00  E-value=3e-40  Score=259.00  Aligned_cols=98  Identities=28%  Similarity=0.615  Sum_probs=94.8

Q ss_pred             cCCCceeeCCcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCcccccCCCceeEEeeeCCCCCcceeE
Q 027552           73 NGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFF  152 (222)
Q Consensus        73 ~~~kPV~LG~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~~sRCFf  152 (222)
                      ++++||+||+++|+|+++|++||+.||++|++++.|+++|+.+|++||. |||+++.|||+||++|+|++| .|.|||||
T Consensus         2 ~~akpv~lG~~~F~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~-~HP~~~~KiG~Gi~~i~V~~h-~~~srCFf   79 (104)
T 2k0m_A            2 AKAQPIEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALK-RHPDATSKIGPGVRNFEVRSA-DYGTQCFW   79 (104)
T ss_dssp             CCCCCEEETTEEESSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHH-TSTTHHHHHTTCEEEEEEEES-SSSCEEEE
T ss_pred             CCCCCeEECCEecCCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH-hCCcHHHhcCCCcceEEEecC-CCCCcEEE
Confidence            4789999999999999999999999999999999999999999999996 999999999999999999999 78999999


Q ss_pred             EEecCCCcccccHHHHhhhc
Q 027552          153 LIREDETADDFSFRKCVDHM  172 (222)
Q Consensus       153 VvR~DGt~eDFSY~KCi~~~  172 (222)
                      |||+|||.+||||+|||++-
T Consensus        80 vvR~DGt~~DFSy~KCv~~~   99 (104)
T 2k0m_A           80 ILRTDGSEERFSYKKCVLEH   99 (104)
T ss_dssp             EEETTSCEEECCGGGSSCCT
T ss_pred             EEEeCCCeeeeeHHHHhhhh
Confidence            99999999999999999874

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=90.00  E-value=0.29  Score=37.75  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             HHHHHhhCCCCcccccCCCceeEEeeeCCCC-Cccee-EEEecCCCcccccHHHHhhhc
Q 027552          116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCF-FLIREDETADDFSFRKCVDHM  172 (222)
Q Consensus       116 L~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~-~sRCF-fVvR~DGt~eDFSY~KCi~~~  172 (222)
                      |.++|..        .| -|..|.|-.++.- .+++| ||...+-    =+-.+||..+
T Consensus        56 l~~~F~~--------~G-~i~~v~i~~~~~~~~~~g~afV~f~~~----~~A~~Ai~~l  101 (156)
T 1h2v_Z           56 IYELFSK--------SG-DIKKIIMGLDKMKKTACGFCFVEYYSR----ADAENAMRYI  101 (156)
T ss_dssp             HHHHHGG--------GS-CEEEEEEEECTTTCCEEEEEEEEESSH----HHHHHHHHHT
T ss_pred             HHHHHHh--------cC-CeEEEEEEecCCCCccceEEEEEECCH----HHHHHHHHHh
Confidence            6777753        33 3788888776653 35555 3443321    1345666644

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=88.49  E-value=0.86  Score=42.04  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=16.1

Q ss_pred             HHHHHHHhhCCCCcccccCCCceeEEeeeCCC-CCccee
Q 027552          114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPT-YKSRCF  151 (222)
Q Consensus       114 ~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~-~~sRCF  151 (222)
                      ..|..+|..|        | -|..|.|-.++. ..+++|
T Consensus       117 ~~L~~~F~~~--------G-~I~~v~i~~d~~tg~~kG~  146 (437)
T 3pgw_S          117 SKLRREFEVY--------G-PIKRIHMVYSKRSGKPRGY  146 (437)
T ss_pred             HHHHHHHHHc--------C-CeeEEEeeccCCCCCccce
Confidence            3477777632        3 377777765543 234544

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=87.40  E-value=0.11  Score=47.01  Aligned_cols=7  Identities=0%  Similarity=0.088  Sum_probs=2.9

Q ss_pred             HHHhhhc
Q 027552          166 RKCVDHM  172 (222)
Q Consensus       166 ~KCi~~~  172 (222)
                      +.|+..+
T Consensus       235 ~~i~~~i  241 (358)
T 2pk2_A          235 DELTHEF  241 (358)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=80.21  E-value=4.5  Score=33.73  Aligned_cols=47  Identities=19%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             HHHHHHHhhCCCCcccccCC-CceeEEeeeCCCC-CcceeE-EEecCCCcccccHHHHhhhc
Q 027552          114 MVLLDLLKKGHPEPDKKIGG-GIQAFQVRYHPTY-KSRCFF-LIREDETADDFSFRKCVDHM  172 (222)
Q Consensus       114 ~vL~eLL~~yHPd~e~KIG~-GI~~i~V~~hp~~-~sRCFf-VvR~DGt~eDFSY~KCi~~~  172 (222)
                      ..|.++|..        .|+ -|..|.|-.+..- .++||- |...+-.    +..+||..+
T Consensus        83 ~~L~~~F~~--------~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~----~a~~Ai~~l  132 (229)
T 3q2s_C           83 EDLTEAVHS--------LGVNDILEIKFFENRANGQSKGFALVGVGSEA----SSKKLMDLL  132 (229)
T ss_dssp             HHHHHHHHT--------TTCCCEEEEEEEECTTTCCEEEEEEEEESCTT----HHHHHHTTS
T ss_pred             HHHHHHHHH--------HCCcceEEEEEEecCCCCccceEEEEEECCHH----HHHHHHHHc
Confidence            347888863        343 4888888776543 577774 4444322    456777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00