Citrus Sinensis ID: 027567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MSLRCRRLSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI
Secondary Structure (PSIPRED)
cccEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEcccccccccEEEEEccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEHHHccccHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccEEEEEEccccccEccccccccEEEEEcccccccccccccccccccccEEEcccccccccccccEccccccccccccEEEEEccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccc
Coil and Loop (DISEMBL)
mslrcrrlssrVSCVFLALCMFLNSLPGLVLAAVVTLDSIKiykthewldnkptvyfkcqgenkkilpdvkeknttyvfkgeeswqPLTEFLgtkckrcglyeedtfnsddvfdewefcpgdfadndgkYIRKTKkefdatflcpkcksgrtesdthvgrkGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEdgdeiedelglgtvi
Flexible Loop (DISEMBL)
mslrcrrlssrVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIykthewldnkptvYFKCQgenkkilpdvkekNTTYvfkgeeswqplTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKefdatflcpkcksgrtesdthvgrKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLfedgdeiedelglgtvi
Low Complexity Region (SEG)
MslrcrrlssrvscvFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESDTHVGRKGMHvaiivlisllasivTAIVLVAAYKYWQKKKRQQDQARFLKlfedgdeiedelglgTVI
Disordered region (IsUnstruct)
*******LSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRT*SDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKK*****ARFLKLF****************
Disordered Region (DISOPRED)
********SSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLC**********************IIVLISLLASIVTAIVLVAAYKY**************KLFEDGDEIEDELGLGT**
Disordered Region (DISEMBL)
********SSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKS********VGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI
Disordered Region (DISPRO)
*SLRCRRLSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKS*************MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTV*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLRCRRLSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
224140135	227	predicted protein [Populus trichocarpa]	1.0	0.977	0.629	2e-77
297741515	221	unnamed protein product [Vitis vinifera]	0.932	0.936	0.594	2e-70
356548178	229	PREDICTED: uncharacterized protein LOC10	0.990	0.960	0.558	9e-68
357510479	226	hypothetical protein MTR_7g100150 [Medic	0.882	0.867	0.615	1e-67
359807460	223	uncharacterized protein LOC100790395 [Gl	0.887	0.883	0.593	1e-67
359481499	211	PREDICTED: uncharacterized protein LOC10	0.882	0.928	0.597	4e-67
255568488	216	conserved hypothetical protein [Ricinus	0.905	0.930	0.606	1e-66
356505160	223	PREDICTED: uncharacterized protein LOC10	0.878	0.874	0.581	4e-65
449448685	229	PREDICTED: uncharacterized protein LOC10	0.995	0.965	0.608	2e-64
356548180	211	PREDICTED: uncharacterized protein LOC10	0.869	0.914	0.592	6e-64

>gi|224140135|ref|XP_002323440.1| predicted protein [Populus trichocarpa] gi|222868070|gb|EEF05201.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 168/227 (74%), Gaps = 5/227 (2%)

Query: 1   MSLRCRRLSSRVS-CVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKC 59
           MS+ C    SRVS   FL   +FL   PG+VL AVVTLDS+KIY+THEWL+ +PT+YF C
Sbjct: 1   MSICCHLQISRVSSATFLVSLIFLIYFPGIVLPAVVTLDSMKIYRTHEWLNVEPTIYFSC 60

Query: 60  QGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFC 119
           +GEN+  LPDVK+ N +Y FKGEESWQPLTEF   KCKRCG YE+D F SDDVFDEWEFC
Sbjct: 61  KGENRTALPDVKQVNVSYTFKGEESWQPLTEFTSLKCKRCGFYEKDDFKSDDVFDEWEFC 120

Query: 120 PGDFADNDGKYIRKTKKEFDATFLCPKC----KSGRTESDTHVGRKGMHVAIIVLISLLA 175
           P DFA +DGK  R    EFDATFLCP+C        + S  H      H+A+++LIS L 
Sbjct: 121 PSDFAGSDGKNERIIHGEFDATFLCPQCVPLAADSNSASKPHKKGNETHLAVVILISALV 180

Query: 176 SIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI 222
           S V  + +VAAYKYWQKKKR+QDQARFLKLFEDGD+IEDELGLGTV+
Sbjct: 181 STVFVLGVVAAYKYWQKKKREQDQARFLKLFEDGDDIEDELGLGTVL 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741515|emb|CBI32647.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 160/212 (75%), Gaps = 5/212 (2%)

Query: 11  RVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDV 70
           RVS  FL   + L+  PG + +A+VTLDS+ I+KTHEWL+ KPT YF+CQGEN  ++PDV
Sbjct: 11  RVSSHFLVCWIVLSCFPGFISSAIVTLDSVVIFKTHEWLE-KPTFYFQCQGENMTVIPDV 69

Query: 71  KEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKY 130
           K+ +  Y FKGEESWQPLTE    KCKRCG YE+D+  SDDVFDEWEFC  DF  +DGKY
Sbjct: 70  KKTHVLYTFKGEESWQPLTEIAVKKCKRCGFYEKDSIKSDDVFDEWEFCLSDFIASDGKY 129

Query: 131 IRKTKKEFDATFLCPKCKSGRTESD----THVGRKGMHVAIIVLISLLASIVTAIVLVAA 186
           +    KEF+ATFLCP+C   +  SD    +H G KG+H+ +++++S L SIV+ + +VA 
Sbjct: 130 VHFKNKEFNATFLCPECIPLQKASDHTTGSHDGGKGVHLVLVIMVSALVSIVSVLAVVAV 189

Query: 187 YKYWQKKKRQQDQARFLKLFEDGDEIEDELGL 218
           YKYWQK+KR+QDQARFLKLFEDGD+IEDEL L
Sbjct: 190 YKYWQKRKREQDQARFLKLFEDGDDIEDELAL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548178|ref|XP_003542480.1| PREDICTED: uncharacterized protein LOC100816823 [Glycine max]

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 158/222 (71%), Gaps = 2/222 (0%)

Query: 1   MSLRCRRLSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQ 60
           MS    RL      +F++  +F  S PGL   A+V+L SI+I+KTHEWL    TVYF C+
Sbjct: 10  MSTNHTRLCQVPLLLFIS-SIFFTSFPGLTFGAIVSLRSIEIFKTHEWLKATTTVYFLCK 68

Query: 61  GENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCP 120
           GEN+ +LPDVK+ +  Y F G+ESWQPL+ F   KCKRCG YEED+  SDD FDEWEFCP
Sbjct: 69  GENETVLPDVKKPHAIYAFNGQESWQPLSSFSSKKCKRCGFYEEDSITSDDAFDEWEFCP 128

Query: 121 GDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESDTHVGRKGMHVAIIVLISLLASIVTA 180
            DFA  +G+YIR  +KEF+ATFLCP+C S     D H   KGMH+A++VL+S+L S+   
Sbjct: 129 SDFAAPNGEYIRFKEKEFNATFLCPECLS-LAGVDEHDDGKGMHIAVVVLLSILVSVTLI 187

Query: 181 IVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI 222
           + +V AYK+W+KK R+QDQAR LKLFED D+I DELGLG+ I
Sbjct: 188 LGVVGAYKFWRKKLREQDQARLLKLFEDDDDIGDELGLGSAI 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510479|ref|XP_003625528.1| hypothetical protein MTR_7g100150 [Medicago truncatula] gi|355500543|gb|AES81746.1| hypothetical protein MTR_7g100150 [Medicago truncatula]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 152/200 (76%), Gaps = 4/200 (2%)

Query: 27  PGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQ 86
           PGLVL+AVVTL SI+I+ THEWL   P+VYF+C G+NK ILPDVK+K+  Y FKGEESWQ
Sbjct: 27  PGLVLSAVVTLSSIEIFTTHEWLRPTPSVYFRCSGDNKTILPDVKKKHVLYAFKGEESWQ 86

Query: 87  PLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPK 146
           PLTEF   KCKRCG YE+D+  SDD FDEWE CP DF   DGKY+   +KE +A+F+CP+
Sbjct: 87  PLTEFTARKCKRCGFYEKDSVLSDDEFDEWELCPSDFTAPDGKYVHFKEKELNASFICPE 146

Query: 147 CKSGRTE----SDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF 202
           C S   +    SD +   KGM+V +IVL+++L S V     V  YKYWQK+KR+QDQARF
Sbjct: 147 CLSFSNDTISASDGNHKGKGMNVGVIVLLTVLVSTVLIAGAVGTYKYWQKRKREQDQARF 206

Query: 203 LKLFEDGDEIEDELGLGTVI 222
           LKLF++GD+IEDELGLGT+I
Sbjct: 207 LKLFDEGDDIEDELGLGTII 226

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807460|ref|NP_001240882.1| uncharacterized protein LOC100790395 [Glycine max] gi|255639431|gb|ACU20010.1| unknown [Glycine max]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 156/204 (76%), Gaps = 7/204 (3%)

Query: 26  LPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESW 85
            PGL+++A VTL SI+I+ THE+L   PTVYF C+G+NK  LPD+K+ +  Y FKGEESW
Sbjct: 20  FPGLIISADVTLSSIEIFTTHEFLKATPTVYFLCKGDNKTQLPDIKKPHVFYSFKGEESW 79

Query: 86  QPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCP 145
           QPLT F G KCKRCG+YEED F SDDVFD WEFCP DF   DG+Y+   +KEF+A+FLCP
Sbjct: 80  QPLTNFSGKKCKRCGIYEEDKFLSDDVFDVWEFCPSDFTTPDGRYVHFKEKEFNASFLCP 139

Query: 146 KCKSGRTES-------DTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQD 198
           +C S    S       + +  +KGM+VA+I+L+S+L S +  + ++ AYKYWQK+KR+QD
Sbjct: 140 ECLSFSGASVSAPPVENHNPNKKGMNVAVIILLSILGSTILILGMLGAYKYWQKRKREQD 199

Query: 199 QARFLKLFEDGDEIEDELGLGTVI 222
           QARFLKLFE+GD+IEDELGLGT+I
Sbjct: 200 QARFLKLFEEGDDIEDELGLGTII 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481499|ref|XP_002274085.2| PREDICTED: uncharacterized protein LOC100253341 [Vitis vinifera]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 153/201 (76%), Gaps = 5/201 (2%)

Query: 22  FLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKG 81
           F+    G + +A+VTLDS+ I+KTHEWL+ KPT YF+CQGEN  ++PDVK+ +  Y FKG
Sbjct: 12  FIGKDRGFISSAIVTLDSVVIFKTHEWLE-KPTFYFQCQGENMTVIPDVKKTHVLYTFKG 70

Query: 82  EESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDAT 141
           EESWQPLTE    KCKRCG YE+D+  SDDVFDEWEFC  DF  +DGKY+    KEF+AT
Sbjct: 71  EESWQPLTEIAVKKCKRCGFYEKDSIKSDDVFDEWEFCLSDFIASDGKYVHFKNKEFNAT 130

Query: 142 FLCPKCKSGRTESD----THVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQ 197
           FLCP+C   +  SD    +H G KG+H+ +++++S L SIV+ + +VA YKYWQK+KR+Q
Sbjct: 131 FLCPECIPLQKASDHTTGSHDGGKGVHLVLVIMVSALVSIVSVLAVVAVYKYWQKRKREQ 190

Query: 198 DQARFLKLFEDGDEIEDELGL 218
           DQARFLKLFEDGD+IEDEL L
Sbjct: 191 DQARFLKLFEDGDDIEDELAL 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568488|ref|XP_002525218.1| conserved hypothetical protein [Ricinus communis] gi|223535515|gb|EEF37184.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/211 (60%), Positives = 155/211 (73%), Gaps = 10/211 (4%)

Query: 21  MFLNSLPGLVLAA--VVTLDSIKIYKTHEWLDN-KPTVYFKCQGENKKILPDVKEKNTTY 77
           +FL+  PGL ++   VVTL+SIKIY +HEW+ + KP VYF C+GEN   LPDV + N TY
Sbjct: 7   LFLSCFPGLAISGGGVVTLESIKIYNSHEWIKSVKPIVYFSCKGENNTELPDVNQLNFTY 66

Query: 78  VFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKE 137
            FKG+ESWQPLTEF  TKCKRCG YE DTF SDDVFDEWEFCP DF D DGKY R    E
Sbjct: 67  TFKGQESWQPLTEFTSTKCKRCGFYERDTFKSDDVFDEWEFCPSDF-DTDGKYSRAKLHE 125

Query: 138 FDATFLCPKC------KSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQ 191
           FDA+F CP C       S  + + +    KGMH+A+ +L++ L S +  + L+A YKYWQ
Sbjct: 126 FDASFFCPHCLPLASADSNSSSASSPKKGKGMHIAVAILVTALVSTLFLLGLLAVYKYWQ 185

Query: 192 KKKRQQDQARFLKLFEDGDEIEDELGLGTVI 222
           KKKR+QDQARFLKLFEDGD+IEDELGLG+V+
Sbjct: 186 KKKREQDQARFLKLFEDGDDIEDELGLGSVL 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505160|ref|XP_003521360.1| PREDICTED: uncharacterized protein LOC100813774 [Glycine max]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 152/203 (74%), Gaps = 8/203 (3%)

Query: 27  PGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQ 86
           PGL+++A +TL SI+I+ THE L   PTVYF C+G+NK  LPD+K+ +  Y FKGEESWQ
Sbjct: 22  PGLIISADMTLSSIEIFTTHELLKATPTVYFLCKGDNKTELPDIKKPHLLYSFKGEESWQ 81

Query: 87  PLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPK 146
           PLT F G KCKRCG+YEED F SDDVFDEWE CP DF   DG+Y    +KEF+A+FLCP+
Sbjct: 82  PLTNFSGKKCKRCGIYEEDIF-SDDVFDEWELCPSDFTTPDGRYAHFKEKEFNASFLCPE 140

Query: 147 C-------KSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ 199
           C        S     + +  +KGM+VA+I+L+S+L S +  + ++  YKYWQK+KR+QDQ
Sbjct: 141 CLSFSGVSVSAPPAENDNPNKKGMNVAVIILLSILGSTILILGMLGTYKYWQKRKREQDQ 200

Query: 200 ARFLKLFEDGDEIEDELGLGTVI 222
           ARFLKLFE+GD+IEDELGLGT+I
Sbjct: 201 ARFLKLFEEGDDIEDELGLGTII 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448685|ref|XP_004142096.1| PREDICTED: uncharacterized protein LOC101220441 [Cucumis sativus] gi|449502587|ref|XP_004161685.1| PREDICTED: uncharacterized LOC101220441 [Cucumis sativus]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 163/230 (70%), Gaps = 9/230 (3%)

Query: 1   MSLRCRRLSSRVSCVFLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQ 60
           M +RC  L+ RVS  FL +  FL+       +AVVTLDSI IYKTHEWL  KPTVYF CQ
Sbjct: 1   MPIRCT-LNFRVSAFFLLVSTFLSCHSEGAESAVVTLDSIVIYKTHEWLAAKPTVYFHCQ 59

Query: 61  GENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCP 120
           G N+  LPDV++++  Y F GEESWQPLTEF   KCKRCG YEED+  SDDVF+EWEFCP
Sbjct: 60  GGNRTTLPDVQKEHVLYSFNGEESWQPLTEFKSKKCKRCGFYEEDSIKSDDVFEEWEFCP 119

Query: 121 GDFADNDGKYIRKTKKEFDATFLCPKCKS--------GRTESDTHVGRKGMHVAIIVLIS 172
            DF    GKY+R   KEF+ATFLC KC +          T S T  G KGM  AII++IS
Sbjct: 120 SDFTAPAGKYVRFNPKEFNATFLCLKCTAYSNVTSTSSSTSSITDGGEKGMQSAIIIVIS 179

Query: 173 LLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIEDELGLGTVI 222
           ++AS+V  I +V  YKYWQKK+RQQDQARFLKLFEDGD+IEDELGL  VI
Sbjct: 180 IVASVVLIIGMVVGYKYWQKKRRQQDQARFLKLFEDGDDIEDELGLSDVI 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548180|ref|XP_003542481.1| PREDICTED: uncharacterized protein LOC100816823 [Glycine max]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 145/194 (74%), Gaps = 1/194 (0%)

Query: 29  LVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPL 88
           L   A+V+L SI+I+KTHEWL    TVYF C+GEN+ +LPDVK+ +  Y F G+ESWQPL
Sbjct: 19  LTFGAIVSLRSIEIFKTHEWLKATTTVYFLCKGENETVLPDVKKPHAIYAFNGQESWQPL 78

Query: 89  TEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCK 148
           + F   KCKRCG YEED+  SDD FDEWEFCP DFA  +G+YIR  +KEF+ATFLCP+C 
Sbjct: 79  SSFSSKKCKRCGFYEEDSITSDDAFDEWEFCPSDFAAPNGEYIRFKEKEFNATFLCPECL 138

Query: 149 SGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFED 208
           S     D H   KGMH+A++VL+S+L S+   + +V AYK+W+KK R+QDQAR LKLFED
Sbjct: 139 S-LAGVDEHDDGKGMHIAVVVLLSILVSVTLILGVVGAYKFWRKKLREQDQARLLKLFED 197

Query: 209 GDEIEDELGLGTVI 222
            D+I DELGLG+ I
Sbjct: 198 DDDIGDELGLGSAI 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2084091	225	AT3G53490 "AT3G53490" [Arabido	0.833	0.822	0.522	6.5e-51
TAIR|locus:2151196	138	AT5G02720 "AT5G02720" [Arabido	0.522	0.840	0.347	6.9e-15

TAIR|locus:2084091 AT3G53490 "AT3G53490" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 103/197 (52%), Positives = 125/197 (63%)

Query:    16 FLALCMFLNSLPGLVLAAVVTLDSIKIYKTHEWLDNKPTVYFKCQGENKKILPDVKEKNT 75
             FL   +F +SLPG +L   VTLDS++I+ TH+W   KPTV+F+C+GENK +LPDVK  N 
Sbjct:    15 FLLCFIFFSSLPGTILTQEVTLDSVQIFTTHDWFSTKPTVFFQCKGENKTVLPDVKRTNV 74

Query:    76 TYVFKGEESWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTK 135
             +Y F GEESWQPLTE  GTKCKRCG+YE+D    D  FDEWE CP DF   +G Y R  +
Sbjct:    75 SYSFNGEESWQPLTELQGTKCKRCGIYEDDPLKYD-TFDEWELCPSDFTA-EGSYKRFKE 132

Query:   136 KEFDATFLCPKC--------KSGRTESDTHVGRKGMHXXXXXXXXXXXXXXTAIVLVAAY 187
             KEF+ATFLC  C        K   TE +   G  GMH               A+ L+  Y
Sbjct:   133 KEFNATFLCHGCSQVGAGSNKESGTEKEEQKG--GMHPGIVVLIVVLLLGVVAVGLLVGY 190

Query:   188 KYWQKKKRQQDQARFLK 204
             KYW+KKKRQQ+QARFLK
Sbjct:   191 KYWRKKKRQQEQARFLK 207

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2151196 AT5G02720 "AT5G02720" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 42/121 (34%), Positives = 65/121 (53%)

Query:    88 LTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKC 147
             +T   G KCKRCG+YE+ +  SD  FD WE CP DF+ +   Y+   +KE +ATF+C  C
Sbjct:     1 MTGIGGEKCKRCGIYEQGSLVSDKEFDVWEVCPTDFSASQ-VYMHFKEKEINATFVCHGC 59

Query:   148 -KSGRTESDTHVGRKGMHXXXXXXXXXXXXXXTAIVLVAA---YKYWQKKKRQQDQARFL 203
              K     + +    +G +              T +V+V     +K+ Q+ K+Q+DQARF+
Sbjct:    60 AKFHSAVAASSPQEEGYNGLTFMIAIIAGVLCTTLVVVGGVFMFKHTQRMKKQRDQARFM 119

Query:   204 K 204
             +
Sbjct:   120 Q 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       179   0.00089  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  189 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.20u 0.13s 17.33t   Elapsed:  00:00:01
  Total cpu time:  17.20u 0.13s 17.33t   Elapsed:  00:00:01
  Start:  Fri May 10 23:06:27 2013   End:  Fri May 10 23:06:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	95.93
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.16
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	91.6
COG4736	60	CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Post	90.94
PF04689	69	S1FA: DNA binding protein S1FA; InterPro: IPR00677	90.87
PF14283	218	DUF4366: Domain of unknown function (DUF4366)	90.47
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.98
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	88.89
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	88.32
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	87.53
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	86.18
PF11669	102	WBP-1: WW domain-binding protein 1; InterPro: IPR0	85.28
PF06864	414	PAP_PilO: Pilin accessory protein (PilO); InterPro	84.62
PHA03265	402	envelope glycoprotein D; Provisional	84.55
PF06365	202	CD34_antigen: CD34/Podocalyxin family; InterPro: I	84.36
PTZ00046	358	rifin; Provisional	84.03
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	83.26
PF02699	82	YajC: Preprotein translocase subunit; InterPro: IP	82.78
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	82.75
KOG3653	534	consensus Transforming growth factor beta/activin	82.74
PRK05346	256	Na(+)-translocating NADH-quinone reductase subunit	82.28
PF02404	273	SCF: Stem cell factor; InterPro: IPR003452 Stem ce	81.43
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	80.78
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	80.35

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=95.93  E-value=0.011  Score=41.32  Aligned_cols=30  Identities=23%  Similarity=0.635  Sum_probs=18.8

Q ss_pred             ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567          167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ  199 (222)
Q Consensus       167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q  199 (222)
                      |.+|+++.+  +.+++ .++|+.||.+||-.|+
T Consensus        13 VF~lVglv~--i~iva-~~iYRKw~aRkr~l~r   42 (43)
T PF08114_consen   13 VFCLVGLVG--IGIVA-LFIYRKWQARKRALQR   42 (43)
T ss_pred             ehHHHHHHH--HHHHH-HHHHHHHHHHHHHHhc
Confidence            344444443  33333 4599999999997663

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.16  E-value=0.05  Score=37.35  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=17.5

Q ss_pred             CCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567          159 GRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKK  194 (222)
Q Consensus       159 ~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkk  194 (222)
                      ..+...+++.|.+-|.+  ++++.++++|..|+|+|
T Consensus         7 ~~~~vaIa~~VvVPV~v--I~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen    7 NSNTVAIAVGVVVPVGV--IIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             CCceEEEEEEEEechHH--HHHHHHHHhheEEeccC
Confidence            34555555555554444  33333344666676664

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=91.60  E-value=0.16  Score=41.45  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=17.3

Q ss_pred             eehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccC
Q 027567          166 AIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDG  209 (222)
Q Consensus       166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFEe~  209 (222)
                      ++.|+++|.+.+++++ ++..|-.+|++||..-...=  +-++|
T Consensus        66 i~~Ii~gv~aGvIg~I-lli~y~irR~~Kk~~~~~~p--~P~~~  106 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGII-LLISYCIRRLRKKSSSDVQP--LPEED  106 (122)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHS----------------
T ss_pred             eeehhHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCC--CCCCC
Confidence            3456666666554444 46688889888886332222  56663

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.94  E-value=0.32  Score=35.78  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=24.5

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhccCcchhhhcC
Q 027567          186 AYKYWQKKKRQQDQARFLKLFEDGDEIEDELG  217 (222)
Q Consensus       186 ~yk~wqkkkRe~~qARflKLFEe~Dd~e~ELG  217 (222)
                      .|-||.+||.+.|||+-. .|..+||.+|+.|
T Consensus        27 ~~ayr~~~K~~~d~aa~~-~l~l~Dd~q~~~~   57 (60)
T COG4736          27 YFAYRPGKKGEFDEAARG-ILPLNDDAQDAAG   57 (60)
T ss_pred             HHHhcccchhhHHHHhcc-CCCCCcchhhhhc
Confidence            678899999999999863 3567888888765

>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix

Probab=90.87  E-value=0.28  Score=37.34  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             CCCCceEeehhhHHHHH-HHHHHHHHHHHHHHHHH
Q 027567          159 GRKGMHVAIIVLISLLA-SIVTAIVLVAAYKYWQK  192 (222)
Q Consensus       159 ~~k~~~~~viii~~vl~-s~~~~~~~~~~yk~wqk  192 (222)
                      +.||.+-++||+++|.- ..++.+|.+++|-||||
T Consensus         6 ~~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk   40 (69)
T PF04689_consen    6 EAKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK   40 (69)
T ss_pred             cccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence            44777666655544433 33556788999999996

S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14283 DUF4366: Domain of unknown function (DUF4366)

Probab=90.47  E-value=0.029  Score=49.10  Aligned_cols=10  Identities=10%  Similarity=0.152  Sum_probs=6.9

Q ss_pred             CCCCCceEEe
Q 027567          124 ADNDGKYIRK  133 (222)
Q Consensus       124 ~~~dG~Y~~f  133 (222)
                      ..++|+|+|.
T Consensus        79 ~Tk~gn~Fyl   88 (218)
T PF14283_consen   79 TTKSGNTFYL   88 (218)
T ss_pred             EecCCCEEEE
Confidence            4457888765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.98  E-value=0.44  Score=42.37  Aligned_cols=24  Identities=21%  Similarity=0.548  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Q 027567          176 SIVTAIVLVAAYKYWQKKKRQQDQ  199 (222)
Q Consensus       176 s~~~~~~~~~~yk~wqkkkRe~~q  199 (222)
                      .++++++.+|+++|||.++-++.|
T Consensus        28 gviLg~~~lfGW~ywq~~q~~q~~   51 (207)
T COG2976          28 GVILGLGGLFGWRYWQSHQVEQAQ   51 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335667777899999999999743

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=88.89  E-value=0.35  Score=41.14  Aligned_cols=15  Identities=13%  Similarity=0.359  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHhHH
Q 027567          183 LVAAYKYWQKKKRQQ  197 (222)
Q Consensus       183 ~~~~yk~wqkkkRe~  197 (222)
                      +.++++.+|-|||++
T Consensus       110 ~yfvir~~R~r~~~r  124 (163)
T PF06679_consen  110 LYFVIRTFRLRRRNR  124 (163)
T ss_pred             HHHHHHHHhhccccc
Confidence            345778887776544

Their function is unknown.

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=88.32  E-value=1  Score=41.33  Aligned_cols=41  Identities=20%  Similarity=0.570  Sum_probs=25.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHhhhhcc
Q 027567          168 IVLISLLASIVTAIVLVAAYKYWQ--KKKRQQDQARFLKLFED  208 (222)
Q Consensus       168 iii~~vl~s~~~~~~~~~~yk~wq--kkkRe~~qARflKLFEe  208 (222)
                      .|++|+++.+++++.++..|-.||  |||+-.....-+||.+|
T Consensus       257 ~I~aSiiaIliIVLIMvIIYLILRYRRKKKmkKKlQYiKLL~e  299 (299)
T PF02009_consen  257 AIIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLKE  299 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence            466677776677777777777774  44444445555666554

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=87.53  E-value=0.83  Score=35.42  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHhHHHHHHHhhh
Q 027567          185 AAYKYWQKKKRQQDQARFLKL  205 (222)
Q Consensus       185 ~~yk~wqkkkRe~~qARflKL  205 (222)
                      ..|+.|+|-|||+.--|+++=
T Consensus        25 iv~ieYrk~~rqrkId~li~R   45 (81)
T PF00558_consen   25 IVYIEYRKIKRQRKIDRLIER   45 (81)
T ss_dssp             HH------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            368888888888776666654

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=86.18  E-value=2.2  Score=33.36  Aligned_cols=21  Identities=33%  Similarity=0.762  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHh
Q 027567          183 LVAAYKYWQKKKRQQDQARFL  203 (222)
Q Consensus       183 ~~~~yk~wqkkkRe~~qARfl  203 (222)
                      ++++|.+||-+|-+++-++|.
T Consensus        16 ~i~~y~~~k~~ka~~~~~kL~   36 (87)
T PF10883_consen   16 LILAYLWWKVKKAKKQNAKLQ   36 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344677777666666644443

>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein

Probab=85.28  E-value=1.4  Score=34.49  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH
Q 027567          179 TAIVLVAAYKYWQKKKRQQDQARF  202 (222)
Q Consensus       179 ~~~~~~~~yk~wqkkkRe~~qARf  202 (222)
                      ++++...++++|++|.|-++|-|-
T Consensus        32 ill~c~c~~~~~r~r~~~~~q~rq   55 (102)
T PF11669_consen   32 ILLSCCCACRHRRRRRRLQQQQRQ   55 (102)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcc
Confidence            345667789999998887776653

This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].

>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins

Probab=84.62  E-value=3  Score=38.57  Aligned_cols=30  Identities=27%  Similarity=0.472  Sum_probs=16.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567          168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ  199 (222)
Q Consensus       168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q  199 (222)
                      ++++++++  ++++++.++|.|||..++|+++
T Consensus       166 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~  195 (414)
T PF06864_consen  166 LVLAAALV--VLALAGGYGWWYWQAQQEEARR  195 (414)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHhhhhhhHHHH
Confidence            34444443  3334456688899877544433

The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.

>PHA03265 envelope glycoprotein D; Provisional

Probab=84.55  E-value=1.1  Score=43.10  Aligned_cols=43  Identities=16%  Similarity=0.219  Sum_probs=27.7

Q ss_pred             CCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567          155 DTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQA  200 (222)
Q Consensus       155 ~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA  200 (222)
                      .+..+++++.+++||-++|  .+++++|+. +|-.|+|||.....+
T Consensus       340 ~~~s~~~~~~~g~~ig~~i--~glv~vg~i-l~~~~rr~k~~~k~~  382 (402)
T PHA03265        340 PPTSKSNSTFVGISVGLGI--AGLVLVGVI-LYVCLRRKKELKKSA  382 (402)
T ss_pred             CCCCCCCCcccceEEccch--hhhhhhhHH-HHHHhhhhhhhhhhh
Confidence            4445667777776654443  345556655 899999998766544

>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins

Probab=84.36  E-value=1.3  Score=39.01  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567          163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF  202 (222)
Q Consensus       163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARf  202 (222)
                      +++ +|+||......++|+++.++|-.|||+-.-..+.|+
T Consensus        99 ~~~-lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl  137 (202)
T PF06365_consen   99 YPT-LIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRL  137 (202)
T ss_pred             ceE-EEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhh
Confidence            453 333333332335666667789999998765555554

The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].

>PTZ00046 rifin; Provisional

Probab=84.03  E-value=1.8  Score=41.16  Aligned_cols=41  Identities=24%  Similarity=0.625  Sum_probs=29.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHhhhhcc
Q 027567          168 IVLISLLASIVTAIVLVAAYKY--WQKKKRQQDQARFLKLFED  208 (222)
Q Consensus       168 iii~~vl~s~~~~~~~~~~yk~--wqkkkRe~~qARflKLFEe  208 (222)
                      .|++|+++.++++|.++..|-.  +||||+-......+||.+|
T Consensus       316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~e  358 (358)
T PTZ00046        316 AIIASIVAIVVIVLIMVIIYLILRYRRKKKMKKKLQYIKLLEE  358 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcc
Confidence            5777777777777766666643  5777777777888888775

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=83.26  E-value=0.37  Score=40.30  Aligned_cols=50  Identities=16%  Similarity=0.452  Sum_probs=8.3

Q ss_pred             eeeCCCCCCCCcCCCCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567          141 TFLCPKCKSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ  199 (222)
Q Consensus       141 TFlCp~C~~~~~~~~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q  199 (222)
                      |-+|..|.+...+|        -..+.+|..|++.+++ +++++.++-+|+|-.|++.-
T Consensus        61 S~~C~~C~a~p~~p--------~~l~~pi~~sal~v~l-Vl~llsg~lv~rrcrrr~~~  110 (129)
T PF12191_consen   61 SPFCQGCPAAPPAP--------FPLLWPILGSALSVVL-VLALLSGFLVWRRCRRREKF  110 (129)
T ss_dssp             -CCCCCHSS-SSS---------SSSS---------------------------------
T ss_pred             CccccCCCCCCCCC--------cceehhhhhhHHHHHH-HHHHHHHHHHHhhhhccccC
Confidence            44588888765332        1223455556655443 35556677788888777653

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=82.78  E-value=2.1  Score=32.04  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhccCcc
Q 027567          186 AYKYWQKKKRQQDQARFLKLFEDGDE  211 (222)
Q Consensus       186 ~yk~wqkkkRe~~qARflKLFEe~Dd  211 (222)
                      .+-+..+|||+++++.++.=..-||+
T Consensus        17 f~~~rpqkk~~k~~~~m~~~Lk~Gd~   42 (82)
T PF02699_consen   17 FLMIRPQKKQQKEHQEMLASLKPGDE   42 (82)
T ss_dssp             HHTHHHHHHHHHHHTTGGG-------
T ss_pred             hheecHHHHHHHHHHHHHHcCCCCCE
Confidence            34455666777777777766665554

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=82.75  E-value=2.2  Score=40.56  Aligned_cols=42  Identities=19%  Similarity=0.564  Sum_probs=29.1

Q ss_pred             ehhhHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHhhhhcc
Q 027567          167 IIVLISLLASIVTAIVLVAAYK--YWQKKKRQQDQARFLKLFED  208 (222)
Q Consensus       167 viii~~vl~s~~~~~~~~~~yk--~wqkkkRe~~qARflKLFEe  208 (222)
                      -.|++|++|.++++|.++..|-  -+||||+-......+||.+|
T Consensus       310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~e  353 (353)
T TIGR01477       310 TPIIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLNE  353 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcc
Confidence            3677777777676666666664  35677777777778888765

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=82.74  E-value=3.7  Score=41.04  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=17.4

Q ss_pred             cccccccccccccccccccccCCCC
Q 027567           84 SWQPLTEFLGTKCKRCGLYEEDTFN  108 (222)
Q Consensus        84 SWQPLT~~~~~KCKRCG~YEed~~~  108 (222)
                      .|.--+.-...+|+.|=-|--|.+.
T Consensus        72 vW~~t~~~~~~v~qGC~~~~~D~~~   96 (534)
T KOG3653|consen   72 VWNKTSGTIEVVKQGCWSHITDDIN   96 (534)
T ss_pred             EeeccCCceeEEeecCccccCCccc
Confidence            4655666777888989876666554

>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional

Probab=82.28  E-value=3.5  Score=36.97  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             cCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q 027567          158 VGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFE  207 (222)
Q Consensus       158 ~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFE  207 (222)
                      .+.+...++++++++++++++++.+.+++-..=+..|+-..|..+|....
T Consensus         5 ~~s~~~ti~~a~~l~lVcs~~vs~~a~~Lk~~q~~N~~ld~~~nIL~aag   54 (256)
T PRK05346          5 KDSNGKTLIVVVVLCLVCSVIVAGAAVGLKPRQEENKLLDKQKNILAAAG   54 (256)
T ss_pred             CCCCceEEEEEeehHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHCC
Confidence            45677788889999999999999888866665555666666777777665

>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis

Probab=81.43  E-value=0.47  Score=43.77  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567          168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQA  200 (222)
Q Consensus       168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA  200 (222)
                      |++++++.  +++.+++ +--||.||+|++.|+
T Consensus       218 iAL~sl~S--LVIGFvl-G~l~WKkkq~~~~~~  247 (273)
T PF02404_consen  218 IALPSLFS--LVIGFVL-GALYWKKKQRSLTQE  247 (273)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHH--HHHHHHH-HHHHHHhhccccccc
Confidence            44444443  2233333 444999999977665

SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=80.78  E-value=0.96  Score=40.07  Aligned_cols=32  Identities=9%  Similarity=0.210  Sum_probs=18.7

Q ss_pred             eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567          164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQ  196 (222)
Q Consensus       164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe  196 (222)
                      +..|-|+|++.+.+++ +.++++|-++|||.|.
T Consensus       270 ~~~vPIaVG~~La~lv-livLiaYli~Rrr~~~  301 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLV-LIVLIAYLIGRRRSRA  301 (306)
T ss_pred             cchHHHHHHHHHHHHH-HHHHHhheeEeccccc
Confidence            3445444544443333 3445589999988775

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=80.35  E-value=3.1  Score=44.49  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             eehhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhhh
Q 027567          166 AIIVLISLLASIVTAIVLVAAYKYWQ-KKKRQQDQARFLKLF  206 (222)
Q Consensus       166 ~viii~~vl~s~~~~~~~~~~yk~wq-kkkRe~~qARflKLF  206 (222)
                      +++++++.++.++++++.|++|-+|| ++.+.+-+.|+|.+=
T Consensus       630 ~~~~viG~~Ll~~~~~~~~~~~~~~r~q~~~k~~~rr~lq~~  671 (1177)
T KOG1025|consen  630 TAIAVIGGLLLAFFVFLGFSLYMCRRMQIIIKRTMRRLLQLE  671 (1177)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHhc
Confidence            44556665555666667777888888 677778888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	90.3
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	89.37
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	87.93

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=90.30  E-value=0.51  Score=34.59  Aligned_cols=39  Identities=13%  Similarity=0.298  Sum_probs=17.6

Q ss_pred             eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567          164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF  202 (222)
Q Consensus       164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARf  202 (222)
                      +++.||+-++.+++++.+.++.++|+...-+..+++|||
T Consensus         9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kF   47 (79)
T 2knc_B            9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKF   47 (79)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444455555667644433333333333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=89.37  E-value=0.1  Score=35.39  Aligned_cols=15  Identities=13%  Similarity=0.224  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHhHHH
Q 027567          184 VAAYKYWQKKKRQQD  198 (222)
Q Consensus       184 ~~~yk~wqkkkRe~~  198 (222)
                      ++.+=||+||++++.
T Consensus        28 ~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A           28 LTFAVYVRRKSIKKK   42 (44)
T ss_dssp             HHHHHHHHTTCSSCC
T ss_pred             HHHHHHhhhhhhhhc
Confidence            335667887776653

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=87.93  E-value=0.22  Score=33.51  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=15.7

Q ss_pred             ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027567          163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQ  197 (222)
Q Consensus       163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~  197 (222)
                      ..++.-|+.++++.++++   ++.+=||+||++++
T Consensus        11 ~~IA~gVVgGv~~~~ii~---~~~~~~~RRr~~~~   42 (44)
T 2ks1_B           11 PSIATGMVGALLLLLVVA---LGIGLFMRRRHIVR   42 (44)
T ss_dssp             SSSTHHHHHHHHHHHHHH---HHHHHHHHTTTCCS
T ss_pred             ceEEeehhHHHHHHHHHH---HHHHHHhhhhHhhc
Confidence            334444555555433333   33555777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00