Citrus Sinensis ID: 027644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQLHCSNLPN
Secondary Structure (PSIPRED)
cccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MALFASilstpvsasvpigrrlingrshsrlfaslspsesspstpattssnnetavssrtppskpfaessrqhdpsfnyaranpagdsplgffRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGlfisnvppnvapnvdralkgsslfgmFSLKLSQLHCSNLPN
Flexible Loop (DISEMBL)
malfasilstpvsasvpiGRRLINGRSHSRLFAslspsesspstpattssnnetavssrtpPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKlsqlhcsnlpn
Low Complexity Region (SEG)
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLspsesspstpattssnnetaVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFlallavggslagsllCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQLHCSNLPN
Disordered region (IsUnstruct)
*****************************************************************************************LGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQL*******
Disordered Region (DISOPRED)
********STPVSASV******************************************************************************SIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNV************KGSSLFGMFSLKLSQLHC*****
Disordered Region (DISEMBL)
MALFASILSTPVSASVPIGRRLINGRSHSRLFA****************************************DPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQLHCSNLPN
Disordered Region (DISPRO)
********S*PVSASVPIGRRLINGRSHSRLFA*L*****************************************FNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP******DRALKGSSLFGMFSLKLSQLHCS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQLHCSNLPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255553454	283	conserved hypothetical protein [Ricinus	0.95	0.738	0.714	5e-72
225450017	278	PREDICTED: uncharacterized protein LOC10	0.95	0.751	0.674	2e-67
356557188	266	PREDICTED: uncharacterized protein LOC10	0.640	0.530	0.815	2e-61
388506628	282	unknown [Lotus japonicus]	0.654	0.510	0.813	4e-61
449464014	289	PREDICTED: uncharacterized protein LOC10	0.713	0.543	0.702	8e-57
15240692	262	uncharacterized protein [Arabidopsis tha	0.559	0.469	0.806	1e-52
20465418	262	unknown protein [Arabidopsis thaliana]	0.559	0.469	0.806	1e-52
297807395	264	structural constituent of ribosome [Arab	0.877	0.731	0.590	4e-52
147819726	195	hypothetical protein VITISV_007114 [Viti	0.472	0.533	0.932	3e-51
212723806	266	uncharacterized protein 114 precursor [Z	0.695	0.575	0.653	1e-49

>gi|255553454|ref|XP_002517768.1| conserved hypothetical protein [Ricinus communis] gi|223543040|gb|EEF44575.1| conserved hypothetical protein [Ricinus communis]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 169/214 (78%), Gaps = 5/214 (2%)

Query: 1   MALFASILSTPVS-ASVPIGRRLIN-GRSHSRLFASLSPSESSP--STPATTSSNNETAV 56
           MAL ASI ++P+S +S PI  R I   R     FA+LS S  S      A   +   + +
Sbjct: 1   MALSASIFTSPLSISSTPIRYRPITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSPI 60

Query: 57  SSRTPPSKPFAESSRQHDPSFNYARANPAGDSPL-GFFRSIESNIERLIFDFRFLALLAV 115
            S   PSKPFAESSR H+ SFNYA ANP+G SP+  F RS ESNIER+IFDFRFLALLAV
Sbjct: 61  DSSKNPSKPFAESSRSHNSSFNYAFANPSGSSPVVQFVRSTESNIERIIFDFRFLALLAV 120

Query: 116 GGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGM 175
           GGSLAGSLLCFLNGC+YIVDAYKVYWTSC KGVHTG+MVLRLVEAIDVYLAGTVMLIFGM
Sbjct: 121 GGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVMLIFGM 180

Query: 176 GLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           GLYGLFISNVPP+VAP VDRALKGSSLFGMF+LK
Sbjct: 181 GLYGLFISNVPPDVAPQVDRALKGSSLFGMFALK 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450017|ref|XP_002274669.1| PREDICTED: uncharacterized protein LOC100267159 [Vitis vinifera] gi|297736322|emb|CBI24960.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 159/209 (76%)

Query: 1   MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRT 60
           MALFA++  TP+S S+   R   N R  S   AS+S S    S P    S     + S  
Sbjct: 1   MALFAAMSYTPLSLSLSRLRPPTNHRRFSPCLASVSSSSHESSPPPPPPSPPTETILSSN 60

Query: 61  PPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLA 120
           PPSKP  ESSR  + ++NYA  +P     + F R  ES+IER+IFDFRFLALLAVGGSLA
Sbjct: 61  PPSKPLVESSRPLNSTYNYALPDPKASPIVRFVRYSESSIERVIFDFRFLALLAVGGSLA 120

Query: 121 GSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL 180
           GSLLCFLNGC+YIVDAYKVYWTSCVKG+HTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL
Sbjct: 121 GSLLCFLNGCVYIVDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL 180

Query: 181 FISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           FISNVPP+V P+VDRALKGSSLFGMF+LK
Sbjct: 181 FISNVPPDVPPSVDRALKGSSLFGMFALK 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557188|ref|XP_003546900.1| PREDICTED: uncharacterized protein LOC100799451 [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 127/141 (90%)

Query: 69  SSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLN 128
            SR  DP+FNYA  NP G+  +   R+ ES+IER+IFDFRFLALLAVGGSLAGSLLCFLN
Sbjct: 57  ESRPPDPAFNYALTNPNGNPIVRIVRATESSIERVIFDFRFLALLAVGGSLAGSLLCFLN 116

Query: 129 GCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPN 188
           GCIYI+DAYKVYW+SCVKGVHTG+MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP+
Sbjct: 117 GCIYIIDAYKVYWSSCVKGVHTGQMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPD 176

Query: 189 VAPNVDRALKGSSLFGMFSLK 209
           V P VDRALKGSSLFGMF++K
Sbjct: 177 VPPTVDRALKGSSLFGMFAMK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506628|gb|AFK41380.1| unknown [Lotus japonicus]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 65  PFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLL 124
           PF ES R  DP+FNYA AN  G   +   R+ ES+IER+IFDFRFLALLAVGGSLAGSLL
Sbjct: 70  PFVES-RPPDPAFNYAYANTNGSPIVRMVRATESSIERIIFDFRFLALLAVGGSLAGSLL 128

Query: 125 CFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN 184
           CFLNGCIYI DAYKVYWT CVKGVH+GKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN
Sbjct: 129 CFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN 188

Query: 185 VPPNVAPNVDRALKGSSLFGMFSLK 209
            PP+V P+VDRALKGSSLFGMF+LK
Sbjct: 189 TPPDVPPSVDRALKGSSLFGMFALK 213

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464014|ref|XP_004149724.1| PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus] gi|449525644|ref|XP_004169826.1| PREDICTED: uncharacterized LOC101217857 [Cucumis sativus]

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 132/168 (78%), Gaps = 11/168 (6%)

Query: 48  TSSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANP-----AGDSP-LGFFRSIESNIE 101
            SS+N T     TPPS  F + S     +F YA  NP     A   P LGF +S ES+IE
Sbjct: 58  VSSSNGT-----TPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIE 112

Query: 102 RLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAI 161
           R+IFDFRFLAL AVGGSLAGS LCFLNGC+YI DAYKVYW+SCVKG+HTG+MVLRLVEAI
Sbjct: 113 RVIFDFRFLALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAI 172

Query: 162 DVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           DVYLAGTVMLIFGMGLYGLFISNV P+  P+VDRAL+GSSLFGMF+LK
Sbjct: 173 DVYLAGTVMLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALK 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240692|ref|NP_196876.1| uncharacterized protein [Arabidopsis thaliana] gi|9758038|dbj|BAB08699.1| unnamed protein product [Arabidopsis thaliana] gi|23297285|gb|AAN12932.1| unknown protein [Arabidopsis thaliana] gi|332004549|gb|AED91932.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/124 (80%), Positives = 112/124 (90%), Gaps = 1/124 (0%)

Query: 87  DSPLG-FFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCV 145
           DSP   FFRS ESN+ER+IFDFRFLALLAVGGSLAGSLLCFLNGC+YIV+AYKVYWT+C 
Sbjct: 69  DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query: 146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
           KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct: 129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGM 188

Query: 206 FSLK 209
           F++K
Sbjct: 189 FAMK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20465418|gb|AAM20133.1| unknown protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/124 (80%), Positives = 112/124 (90%), Gaps = 1/124 (0%)

Query: 87  DSPLG-FFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCV 145
           DSP   FFRS ESN+ER+IFDFRFLALLAVGGSLAGSLLCFLNGC+YIV+AYKVYWT+C 
Sbjct: 69  DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query: 146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
           KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct: 129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHWPHDVPPESDRALRSSSLFGM 188

Query: 206 FSLK 209
           F++K
Sbjct: 189 FAMK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807395|ref|XP_002871581.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297317418|gb|EFH47840.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 148/210 (70%), Gaps = 17/210 (8%)

Query: 1   MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRT 60
           MAL + I +TP+S SVP    L   R      A+L  S S  S+ A++S+     V+  T
Sbjct: 1   MALCSLISATPISVSVPRYLVLPTRRRFHLPLATLGSSSSPESS-ASSSTPTSIPVNGNT 59

Query: 61  PPSKPFAESSRQHDPSFNYARANPAGDSPLG-FFRSIESNIERLIFDFRFLALLAVGGSL 119
            PS            S+   R +   +SP   FFRS ESN+ER+IFDFRFLALLAVGGSL
Sbjct: 60  VPS------------SYGTTRKD---NSPFAQFFRSTESNVERIIFDFRFLALLAVGGSL 104

Query: 120 AGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYG 179
           AGSLLCFLNGC+YIV+AYKVYWT+C KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYG
Sbjct: 105 AGSLLCFLNGCVYIVEAYKVYWTNCAKGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYG 164

Query: 180 LFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           LFIS+ P +V P  DRAL+ SSLFGMF++K
Sbjct: 165 LFISHSPHDVPPESDRALRSSSLFGMFAMK 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819726|emb|CAN69229.1| hypothetical protein VITISV_007114 [Vitis vinifera]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/104 (93%), Positives = 103/104 (99%)

Query: 106 DFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYL 165
           DFRFLALLAVGGSLAGSLLCFLNGC+YI+DAYKVYWTSCVKG+HTGKMVLRLVEAIDVYL
Sbjct: 23  DFRFLALLAVGGSLAGSLLCFLNGCVYIIDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYL 82

Query: 166 AGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           AGTVMLIFGMGLYGLFISNVPP+V P+VDRALKGSSLFGMF+LK
Sbjct: 83  AGTVMLIFGMGLYGLFISNVPPDVPPSVDRALKGSSLFGMFALK 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212723806|ref|NP_001131494.1| uncharacterized protein 114 precursor [Zea mays] gi|194691688|gb|ACF79928.1| unknown [Zea mays] gi|414887929|tpg|DAA63943.1| TPA: uncharacterized protein 114 [Zea mays]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/156 (65%), Positives = 121/156 (77%), Gaps = 3/156 (1%)

Query: 57  SSRTP-PSKPFAESSRQHDPSFNYARANPAGDSPLGFFRS--IESNIERLIFDFRFLALL 113
           SS +P PS   A SS+           N    +P    +S  +E+ +ER+IFDFRFLALL
Sbjct: 39  SSASPAPSGEVASSSQDGRGYGTVGGPNGHAIAPATVTKSTAVETTVERVIFDFRFLALL 98

Query: 114 AVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIF 173
           AV GSLAGS+LCFLNGC++I +AY+VYW+SCVKGVHTG+MVL++VEAIDVYLAGTVMLIF
Sbjct: 99  AVAGSLAGSVLCFLNGCVFIKEAYQVYWSSCVKGVHTGQMVLKVVEAIDVYLAGTVMLIF 158

Query: 174 GMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
           GMGLYGLFISN P +VAP  DRAL GSSLFGMF+LK
Sbjct: 159 GMGLYGLFISNAPASVAPESDRALSGSSLFGMFALK 194

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2173239	262	AT5G13720 [Arabidopsis thalian	0.559	0.469	0.685	4.1e-45
TAIR|locus:2140411	273	AT4G19390 "AT4G19390" [Arabido	0.504	0.406	0.435	4.9e-21

TAIR|locus:2173239 AT5G13720 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 85/124 (68%), Positives = 97/124 (78%)

Query:    87 DSPLG-FFRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCV 145
             DSP   FFRS ESN+ER+IFDFRF               CFLNGC+YIV+AYKVYWT+C 
Sbjct:    69 DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query:   146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
             KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct:   129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGM 188

Query:   206 FSLK 209
             F++K
Sbjct:   189 FAMK 192

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2140411 AT4G19390 "AT4G19390" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 51/117 (43%), Positives = 71/117 (60%)

Query:    93 FRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCVKGVHTGK 152
             F ++E  IE++I+  RF               CF+ GC+Y+VD++  Y       V+ GK
Sbjct:    94 FEALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGK 147

Query:   153 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
             ++  LVEAID+YL GTVML+FG+GLY LFISN+  + +   D     SSLFGMF+LK
Sbjct:   148 VIFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLK 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       185   0.00080  110 3  11 22  0.37    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Total cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Start:  Sat May 11 02:24:47 2013   End:  Sat May 11 02:24:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028719001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (322 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam03350	124	pfam03350, UPF0114, Uncharacterized protein family	3e-29
COG2862	169	COG2862, COG2862, Predicted membrane protein [Func	3e-07

>gnl|CDD|217507 pfam03350, UPF0114, Uncharacterized protein family, UPF0114

 Score =  105 bits (264), Expect = 3e-29
 Identities = 38/100 (38%), Positives = 58/100 (58%)

Query: 103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAID 162
           LIF  R+L L AV G L GS+L FL GC+ +V  +   + + V  +    ++L ++E ID
Sbjct: 1   LIFASRWLVLPAVIGLLLGSVLLFLKGCVELVHLFIETFRAHVFTIDETDLILAVLELID 60

Query: 163 VYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSL 202
           ++L GT++LI G G Y LF+S +     P++   L   SL
Sbjct: 61  LFLIGTLLLIVGFGGYELFVSKLDIAEHPDLPEWLGIVSL 100

Length = 124

>gnl|CDD|225417 COG2862, COG2862, Predicted membrane protein [Function unknown]

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 94  RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTG-- 151
             +E  IERLIF  R+L L  V   L  +L+ F          +K  W   +  +     
Sbjct: 2   SMLEKIIERLIFASRWL-LAPVYLGLIVALVLFAYK------FFKEIW-HLLPNLFDMGE 53

Query: 152 -KMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP 187
             ++L  +  +D+ L   ++++   G Y LF+S +  
Sbjct: 54  NDLILAALSLVDLLLVAGLLVMVSFGGYELFVSKLDI 90

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PRK05208	168	hypothetical protein; Provisional	99.97
TIGR00645	167	HI0507 conserved hypothetical transmembrane protei	99.96
PF03350	124	UPF0114: Uncharacterized protein family, UPF0114;	99.95
COG2862	169	Predicted membrane protein [Function unknown]	99.92

>PRK05208 hypothetical protein; Provisional

Probab=99.97  E-value=3.5e-31  Score=223.55  Aligned_cols=111  Identities=22%  Similarity=0.270  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHH
Q 027644           93 FRSIESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVML  171 (220)
Q Consensus        93 ~~~iE~~fEriLf~SRwLvLlpV~~sLlgSllLF-i~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLL  171 (220)
                      .+++|+.||+++|+|||++ +|||+||++++.+| ++|++|++|.+.+.++     .++++++++++++||+||+|++|+
T Consensus         2 ~~~~e~~~E~~l~~sRwl~-~pv~~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lIDl~Lia~lLl   75 (168)
T PRK05208          2 IKRMERIIERLIFASRWLQ-APLYLGLSLALAVLVYKFFQELWHLLPHVFS-----LDESDLILVVLSLIDVVLVANLLV   75 (168)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999996 99999999999999 9999999999888886     678899999999999999999999


Q ss_pred             HHhhhcchhccccCCCCCCCCcccccccCCccccccccccc
Q 027644          172 IFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQ  212 (220)
Q Consensus       172 Ifs~GLYELFISkid~~~~~~~p~wL~i~SLd~lf~lker~  212 (220)
                      ||++|+|||||||+|.++|++.|+||.+.|+|   .||.+.
T Consensus        76 Iv~~ggYElFISkid~~~~~~~p~wL~~~~l~---~LK~KL  113 (168)
T PRK05208         76 MVIFSGYENFVSRLDIDGHPDEPEWLGKVDAS---SLKVKL  113 (168)
T ss_pred             HHHhhhHHHhhccCccccCCCCCccceecCHH---HHHHHH
Confidence            99999999999999999999999999999999   556553

>TIGR00645 HI0507 conserved hypothetical transmembrane protein

Probab=99.96  E-value=2.6e-29  Score=212.06  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 027644           96 IESNIERLIFDFRFLALLAVGGSLAGSLLC-FLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFG  174 (220)
Q Consensus        96 iE~~fEriLf~SRwLvLlpV~~sLlgSllL-Fi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs  174 (220)
                      +|+.||++||+|||+ ++|||+||++++.+ .+++++|++|.+.+...     .+++++++.++++||+||+|++|+||+
T Consensus         1 ~e~~~E~~l~~SRwl-l~pvy~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lID~~Lia~lLlIv~   74 (167)
T TIGR00645         1 QENIIEKIIFASRWL-LAPIYLGLSLTLVILSYKFIKELWHLLINVND-----MDENDLMLGVLNLVDVVMIAGLLVMVT   74 (167)
T ss_pred             ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            588999999999999 79999999999665 45567778877665543     678899999999999999999999999


Q ss_pred             hhcchhccccCCCCCCCCcccccccCCccccccccccc
Q 027644          175 MGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQ  212 (220)
Q Consensus       175 ~GLYELFISkid~~~~~~~p~wL~i~SLd~lf~lker~  212 (220)
                      +|+|||||||+|.++|++.|+||.+.|+|   .||.+.
T Consensus        75 ~ggYElFISkid~~~~~~~p~wL~~~~l~---~LK~KL  109 (167)
T TIGR00645        75 IGGYEIFVSKLDTRNHPEQPEWLSHVDAT---VLKVKV  109 (167)
T ss_pred             hccHhHhhccCccccCCCCCCceeecCHH---HHHHHH
Confidence            99999999999999999999999999999   556543

This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.

>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes

Probab=99.95  E-value=1.1e-28  Score=197.60  Aligned_cols=108  Identities=35%  Similarity=0.514  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHhhhcchhcc
Q 027644          103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFI  182 (220)
Q Consensus       103 iLf~SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs~GLYELFI  182 (220)
                      ++|+|||+++++++++++++++||++|++|+++.+.++++....+.++++++..+++++|+||+|++++||++|+|||||
T Consensus         1 ~l~~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFI   80 (124)
T PF03350_consen    1 LLFASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFAFGLYELFI   80 (124)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeE
Confidence            47999999999999999999999999999999999999986566677889999999999999999999999999999999


Q ss_pred             ccCCCCCCCCcccccccCCcccccccccccc
Q 027644          183 SNVPPNVAPNVDRALKGSSLFGMFSLKLSQL  213 (220)
Q Consensus       183 Skid~~~~~~~p~wL~i~SLd~lf~lker~~  213 (220)
                      ||+|.+++++.|+||+++|+|   +||.|..
T Consensus        81 s~~~~~~~~~~p~wL~i~s~~---~LK~KL~  108 (124)
T PF03350_consen   81 SKLDIAEHDDRPKWLGIRSLD---DLKLKLG  108 (124)
T ss_pred             ecccccccCcccCcccccCHH---HHHHHHH
Confidence            999999988999999999999   6777643

>COG2862 Predicted membrane protein [Function unknown]

Probab=99.92  E-value=1.2e-25  Score=190.17  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 027644           94 RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNG-CIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLI  172 (220)
Q Consensus        94 ~~iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G-~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLI  172 (220)
                      +++|++|||+||+|||+. +|||+||++++++|.++ ..++||.+.++++     .++.++++.++++||++|+|++|+|
T Consensus         2 ~~~e~~~e~~i~~SRwll-~pv~~gLi~al~lf~~~f~~~i~~~~~~~~~-----~~e~~lil~~l~liDl~Lva~lLvm   75 (169)
T COG2862           2 SMLEKIIERLIFASRWLL-APVYLGLIVALVLFAYKFFKEIWHLLPNLFD-----MGENDLILAALSLVDLLLVAGLLVM   75 (169)
T ss_pred             CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----cCchhHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999885 89999999999988777 4446666666665     5588999999999999999999999


Q ss_pred             HhhhcchhccccCCCCCCCCcccccccCCcccc
Q 027644          173 FGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM  205 (220)
Q Consensus       173 fs~GLYELFISkid~~~~~~~p~wL~i~SLd~l  205 (220)
                      +++|+|||||||+|.++ ++.+.||.+.|+++|
T Consensus        76 v~~g~YelFVskLd~~~-~~~~~wL~~~d~~~L  107 (169)
T COG2862          76 VSFGGYELFVSKLDIAE-EDKPSWLGIVDLSDL  107 (169)
T ss_pred             HHHhhHHHHHhhccccc-ccccchhhcccHHHH
Confidence            99999999999999988 778999999999854

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00