Citrus Sinensis ID: 027649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE
Secondary Structure (PSIPRED)
ccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHcccEEEEccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccccccccccccccEEccccccccccccEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEcccccEEEEEEccccccEEEEEEEEEEEEcHHHccccccccEEEEEEEccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
MAISGDLRVAATLASyhqhplrsslpsskvdfagfpseitpkwpgmaidncsMRQSKLFSRisgdyklspnpisHEVESFLLNAINMSFFDRLNLAWkivfpspttrrnsNARIAKQRLQMILFsdrcavsdeAKRKIVNNIVHALSDFveiesqdkvqlnvstdtdlgtiysvtvpvrrvkpeyldsydvgtianveykdtgetsgsvdvrfdffvpde
Flexible Loop (DISEMBL)
MAISGDLRVAATLASyhqhplrsslpsskVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVfpspttrrnsnaRIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVqlnvstdtdlgtiysvtvpvrrvkpeyldsydvgtIANVeykdtgetsgsvdvrfdffvpde
Low Complexity Region (SEG)
MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE
Disordered region (IsUnstruct)
*******************************FAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTT****NARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFV***
Disordered Region (DISOPRED)
**********A*******************DFAGFPSEITP***************************************LLNAINMSFFDRLNLAWKIV********************MILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRR********************DTGETSGSVDVRFDFFVP**
Disordered Region (DISEMBL)
MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE
Disordered Region (DISPRO)
*****DLRVAATLASYHQHPLRSSLPSSKVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTT**NSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGFPSEITPKWPGMAIDNCSMRQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9C4Z7	229	Cell division topological	yes	no	0.972	0.934	0.691	2e-80
Q5N4D6	91	Cell division topological	yes	no	0.372	0.901	0.305	0.0003
Q31PU2	91	Cell division topological	yes	no	0.372	0.901	0.305	0.0003

>sp|Q9C4Z7|MINE1_ARATH Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1 PE=1 SV=1

 Score =  298 bits (762), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 179/227 (78%), Gaps = 13/227 (5%)

Query: 4   SGDLRVAATLAS--YHQHPLRSSLPSS--KVDFAGFPS------EITPKWPGMAIDNCSM 53
           SG LR++ATL S  +H H  R SLPSS  KVDF GF S      E     PG+AI   + 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 54  R-QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNA 112
           R Q K+ +R +GDY+LSP+P   E+ESFL NAINM FFDRLNLAWKI+FPS  +RR+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 113 RIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIY 172
           RIAKQRL+MILFSDRC VSDEAKRKIVNNI+HALSDFVEIES++KVQLNVSTD DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 173 SVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPD 219
           SVTVPVRRVKPEY D  + GTI NVEYKDT +  GSVDVRFDF+VP+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

Acts as a topological specificity factor during plastid division and specify plastid constriction sites. May contribute to gravitropism in stems and hypocotyls. Stimulates MIND1 ATPase activity. In cooperation with MIND1, prevents FtsZ ring formation anywhere outside of the mid-plastids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5N4D6|MINE_SYNP6 Cell division topological specificity factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=minE PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 89  FFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSD 148
            F+RL       FP     R++     KQRL+++L  DR  +S E  +K+   I+  +S 
Sbjct: 5   LFERL-------FPRQQASRDT----VKQRLKLVLAHDRADLSPELLQKMRQEILEVVSR 53

Query: 149 FVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKP 183
           +VE++S+  ++L++  D  +  + +  +P+RRVKP
Sbjct: 54  YVELDSEG-MELSLENDQRVTALVA-NLPIRRVKP 86

Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q31PU2|MINE_SYNE7 Cell division topological specificity factor OS=Synechococcus elongatus (strain PCC 7942) GN=minE PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 13/95 (13%)

Query: 89  FFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSD 148
            F+RL       FP     R++     KQRL+++L  DR  +S E  +K+   I+  +S 
Sbjct: 5   LFERL-------FPRQQASRDT----VKQRLKLVLAHDRADLSPELLQKMRQEILEVVSR 53

Query: 149 FVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKP 183
           +VE++S+  ++L++  D  +  + +  +P+RRVKP
Sbjct: 54  YVELDSEG-MELSLENDQRVTALVA-NLPIRRVKP 86

Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255542134	232	conserved hypothetical protein [Ricinus	1.0	0.948	0.716	1e-90
378750395	232	MinE protein [Manihot esculenta]	1.0	0.948	0.711	7e-88
449452056	226	PREDICTED: cell division topological spe	0.995	0.969	0.685	3e-82
225469230	225	PREDICTED: cell division topological spe	0.986	0.964	0.702	2e-81
118489508	226	unknown [Populus trichocarpa x Populus d	0.981	0.955	0.691	2e-81
118484956	232	unknown [Populus trichocarpa]	0.995	0.943	0.681	8e-81
224108934	232	predicted protein [Populus trichocarpa]	0.995	0.943	0.676	2e-80
224101417	226	predicted protein [Populus trichocarpa]	0.981	0.955	0.674	4e-80
351722701	232	plastid division regulator MinE [Glycine	1.0	0.948	0.686	3e-79
18409259	229	bacterial MinE 1-like protein [Arabidops	0.972	0.934	0.691	1e-78

>gi|255542134|ref|XP_002512131.1| conserved hypothetical protein [Ricinus communis] gi|223549311|gb|EEF50800.1| conserved hypothetical protein [Ricinus communis]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 193/229 (84%), Gaps = 9/229 (3%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPSS--KVDFAGFP---SEITP---KWPGMAIDNCS 52
           MAISGDLRV+ATL SYH+HP RSS PSS  KV+F GFP   S  +P   KWP + +D C 
Sbjct: 1   MAISGDLRVSATLTSYHKHPFRSSFPSSNSKVEFTGFPGGGSVTSPNVHKWPSIMVDRCK 60

Query: 53  MR-QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSN 111
           M   S+ FS I+GDY+LS   I  E ESFLLNAINMSFF+RLNLAWKI+FPSP  R++SN
Sbjct: 61  MHDHSRRFSGITGDYQLSSTSIGEEAESFLLNAINMSFFERLNLAWKIIFPSPARRKSSN 120

Query: 112 ARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTI 171
           AR+AKQRL+MILFSDRCAVSDEAKRKIV+NIVHALS+FV IESQDKVQL+V+ D+DLGT+
Sbjct: 121 ARVAKQRLKMILFSDRCAVSDEAKRKIVSNIVHALSEFVVIESQDKVQLSVTADSDLGTV 180

Query: 172 YSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           YSVTVPVRRV+PEY D+ ++G+I N+EYKDTGE+SGSVDVRFDFF+PDE
Sbjct: 181 YSVTVPVRRVRPEYQDAEEIGSITNIEYKDTGESSGSVDVRFDFFIPDE 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378750395|gb|AFC37489.1| MinE protein [Manihot esculenta]

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 194/229 (84%), Gaps = 9/229 (3%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPSS--KVDFAGFP---SEITP---KWPGMAIDNCS 52
           MAISGDLRV+ATLASYH+HPLRSSLP+S  KV+F GFP   S  +P   KWPG+ +D   
Sbjct: 1   MAISGDLRVSATLASYHKHPLRSSLPTSNSKVEFIGFPGRGSGASPNRHKWPGIMLDRYK 60

Query: 53  MR-QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSN 111
           M+  S+ FS ISGDY+LS   I  + ESFLLNAINMSF +RLNLAWKI+FPSP  R++SN
Sbjct: 61  MQDHSRRFSGISGDYQLSSTSIRDDAESFLLNAINMSFPERLNLAWKIIFPSPARRKSSN 120

Query: 112 ARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTI 171
           ARIAKQRL+MILFSDRCAVSDEAK+KIV N+VHALS+FVEI+S+DKVQL+V+ D DLGT+
Sbjct: 121 ARIAKQRLKMILFSDRCAVSDEAKQKIVRNVVHALSEFVEIDSEDKVQLSVTADLDLGTV 180

Query: 172 YSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           YSVTVPVRRV+PEY D+ + G+I N+EYKDTG+TSGSVDVRFDFF+PDE
Sbjct: 181 YSVTVPVRRVRPEYQDAEETGSITNIEYKDTGDTSGSVDVRFDFFIPDE 229

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452056|ref|XP_004143776.1| PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Cucumis sativus] gi|449486521|ref|XP_004157321.1| PREDICTED: cell division topological specificity factor homolog, chloroplastic-like [Cucumis sativus]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/226 (68%), Positives = 187/226 (82%), Gaps = 7/226 (3%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGF----PS--EITPKWPGMAIDNCSMR 54
           MA+SGDLRV+ATL S+H HPLR S PSSKV+F+GF    PS  E+  KW   AID+ + R
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 55  Q-SKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNAR 113
             S++ +  S  ++LS    S E E+FLLNAINM+FF+RLNLAW+I+FPSP ++RNSNA 
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 114 IAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYS 173
           IAKQRL+MILF+DRCAVSDEAKRKIV+NIV ALSDFVEIES+DKVQL++STD+DLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 174 VTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPD 219
           VTVPVRRVK EY ++ + GTI N+EYKD GETSGSVDVRFDFF+PD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469230|ref|XP_002265574.1| PREDICTED: cell division topological specificity factor homolog, chloroplastic [Vitis vinifera] gi|296088282|emb|CBI36508.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 181/225 (80%), Gaps = 8/225 (3%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPSSKVDFAGFPS------EITPKWPGMAIDNCSMR 54
           MA+SGDLRV ATL+SY  HPLRSSL SSKV FAG  +      +ITP+WP + ++   + 
Sbjct: 1   MAVSGDLRVVATLSSYPTHPLRSSLLSSKVGFAGALNGESSIPDITPRWPSLVLNGHPVH 60

Query: 55  -QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNAR 113
             SK    I GD KLSP  IS E ES LLNAINM+F +RLNLAWKI+FP P   R+SNAR
Sbjct: 61  CHSKRIFGIMGDNKLSPRSISQEAESLLLNAINMNFLERLNLAWKIIFP-PQKTRHSNAR 119

Query: 114 IAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYS 173
           IAKQRLQMILFSDRCAVSDEAK+KIVNNIVHALSDFVEIESQDKVQL+VSTD +LGT+YS
Sbjct: 120 IAKQRLQMILFSDRCAVSDEAKQKIVNNIVHALSDFVEIESQDKVQLSVSTDPNLGTVYS 179

Query: 174 VTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVP 218
           VTVPVRRVKPEY    ++GTIAN+EYKD G++SGSVDVRFDF +P
Sbjct: 180 VTVPVRRVKPEYQAVDEMGTIANIEYKDNGDSSGSVDVRFDFVIP 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489508|gb|ABK96556.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 181/227 (79%), Gaps = 11/227 (4%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPS-SKVDFAGF------PSEITPKWPGMAIDNCSM 53
           MAISGDLRV+ATLASY +H L S  PS SKV+F GF       S+   KWPG  I     
Sbjct: 1   MAISGDLRVSATLASYSKHLLCSLPPSNSKVEFLGFLNGGCGTSQNMLKWPGFKIHGHFK 60

Query: 54  RQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNAR 113
           R +     I+ DY+LS   I+ E ES LL+AINMSFF+RLNLAW+I+FPSPT R++SNAR
Sbjct: 61  RSAG----IAEDYQLSSTAINQEAESLLLSAINMSFFERLNLAWRIIFPSPTQRKSSNAR 116

Query: 114 IAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYS 173
           IAKQRL+MILFSDRCAVSDEAKRKIVNNIVHALS+FVEIESQDKVQL+V+TDTDLGT+YS
Sbjct: 117 IAKQRLKMILFSDRCAVSDEAKRKIVNNIVHALSEFVEIESQDKVQLSVTTDTDLGTVYS 176

Query: 174 VTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           VTVPV RVKP Y    + G+I N+EYKDTGETSGSVDVRFDF++PDE
Sbjct: 177 VTVPVHRVKPGYQGEEESGSITNIEYKDTGETSGSVDVRFDFYIPDE 223

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484956|gb|ABK94343.1| unknown [Populus trichocarpa]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 10/229 (4%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLP--SSKVDFAGF------PSEITPKWPGMAIDNCS 52
           MAISGDLRV+ATLASY +HP R SLP  +SKV+F GF       S+   KWPG   D+  
Sbjct: 1   MAISGDLRVSATLASYSKHPPRCSLPPSNSKVEFLGFLNGGCGTSQNMLKWPGGVFDSRK 60

Query: 53  MRQS-KLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSN 111
           M    K  + I+ +Y+LS   I+ E E  LL+AINMS F+RLNLAW+I+FPSPT R++SN
Sbjct: 61  MHGHFKRSAGIAEEYQLSSTAINQEAERLLLSAINMSLFERLNLAWRIIFPSPTQRKSSN 120

Query: 112 ARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTI 171
           ARIAKQRL+MILFSDRCAVSDEAKRKIVNNIVHALS+FVEIESQDKVQL+V+TDTDLGT+
Sbjct: 121 ARIAKQRLKMILFSDRCAVSDEAKRKIVNNIVHALSEFVEIESQDKVQLSVTTDTDLGTV 180

Query: 172 YSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           YSVTVPVRRVKP Y +  + G+I N+EYKDTGE SGSVDVRFDF++PDE
Sbjct: 181 YSVTVPVRRVKPGYQEE-ESGSITNIEYKDTGENSGSVDVRFDFYLPDE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108934|ref|XP_002315021.1| predicted protein [Populus trichocarpa] gi|222864061|gb|EEF01192.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 184/229 (80%), Gaps = 10/229 (4%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLP--SSKVDFAGF------PSEITPKWPGMAIDNCS 52
           MAISGDLRV+ATLASY +HP R SLP  +SKV+F GF       S+   KWPG   D+  
Sbjct: 1   MAISGDLRVSATLASYSKHPPRCSLPPSNSKVEFLGFLNGGCGTSQNMLKWPGGVFDSRK 60

Query: 53  MRQS-KLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSN 111
           M    K  + I+ +Y+LS   I+ E E  LL+AINMS F+RLNLAW+I+FPSP+ R++SN
Sbjct: 61  MHGHFKRSAGIAEEYQLSSTAINQEAERLLLSAINMSLFERLNLAWRIIFPSPSQRKSSN 120

Query: 112 ARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTI 171
           ARIAKQRL+MILFSDRCAVSDEAKRKIVNNIVHALS+FVEIESQDKVQL+V+TDTDLGT+
Sbjct: 121 ARIAKQRLKMILFSDRCAVSDEAKRKIVNNIVHALSEFVEIESQDKVQLSVTTDTDLGTV 180

Query: 172 YSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           YSVTVPVRRVKP Y +  + G+I N+EYKDTGE SGSVDVRFDF++PDE
Sbjct: 181 YSVTVPVRRVKPGYQEE-ESGSITNIEYKDTGENSGSVDVRFDFYLPDE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101417|ref|XP_002312270.1| predicted protein [Populus trichocarpa] gi|222852090|gb|EEE89637.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 153/227 (67%), Positives = 181/227 (79%), Gaps = 11/227 (4%)

Query: 1   MAISGDLRVAATLASYHQHPLRSSLPS-SKVDFAGF------PSEITPKWPGMAIDNCSM 53
           MAISGDLRV+ATLASY +H L S  PS SKV+F GF       S+   KWPG  I     
Sbjct: 1   MAISGDLRVSATLASYSKHLLCSLPPSNSKVEFLGFLNGGCGTSQNMLKWPGFKIHGHFK 60

Query: 54  RQSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNAR 113
           R +     I+ DY+LS   I+ E ES LL+A+NMSFF+RLNLAW+I+FPSP+ R++SNAR
Sbjct: 61  RSAG----IAEDYQLSSTAINQEAESLLLSAVNMSFFERLNLAWRIIFPSPSQRKSSNAR 116

Query: 114 IAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYS 173
           IAKQRL+MILFSDRCAVSDEAKRKIVNN+VHALS+FVEIESQDKVQL+V+TDTDLGT+YS
Sbjct: 117 IAKQRLKMILFSDRCAVSDEAKRKIVNNVVHALSEFVEIESQDKVQLSVTTDTDLGTVYS 176

Query: 174 VTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           VTVPV RVKP Y +  + G+I N+EYKDTGETS SVDVRFDF++PDE
Sbjct: 177 VTVPVHRVKPGYQEEEESGSITNIEYKDTGETSASVDVRFDFYIPDE 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722701|ref|NP_001236997.1| plastid division regulator MinE [Glycine max] gi|71089837|gb|AAZ23775.1| plastid division regulator MinE [Glycine max]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 181/230 (78%), Gaps = 10/230 (4%)

Query: 1   MAISGDLRVAATLASYHQH--PLRSSLPSS-KVDFAGFP------SEITPKWPGMAIDNC 51
           MAISGDLRV+ATL  Y  H  PLR+S  SS KVDF  F       SE TPK P + I  C
Sbjct: 1   MAISGDLRVSATLPLYRSHSPPLRTSSQSSPKVDFHRFLNRACSISEFTPKCPYLTIVRC 60

Query: 52  SMRQ-SKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNS 110
           +MR   K  + + G  K + N +S E E+FLL+A+ M+FF+RLNLAWKI+FPS T+R+NS
Sbjct: 61  NMRGYCKPVAAVLGGPKFTSNSVSQETENFLLDAVKMNFFERLNLAWKIIFPSATSRKNS 120

Query: 111 NARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGT 170
           NARIAKQRL+MILFSDRC VSDEAKRKIV+N+V ALSDFVEIESQDKVQL+VS DTDLGT
Sbjct: 121 NARIAKQRLKMILFSDRCEVSDEAKRKIVSNVVRALSDFVEIESQDKVQLSVSADTDLGT 180

Query: 171 IYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPDE 220
           IYSVTVPVRRVKPEY +  + GTI NVEYKDTGETSGSVDV FDF+VPDE
Sbjct: 181 IYSVTVPVRRVKPEYQEMDEFGTITNVEYKDTGETSGSVDVTFDFYVPDE 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409259|ref|NP_564964.1| bacterial MinE 1-like protein [Arabidopsis thaliana] gi|75168864|sp|Q9C4Z7.1|MINE1_ARATH RecName: Full=Cell division topological specificity factor homolog, chloroplastic; Short=AtMinE1; AltName: Full=Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 12; Flags: Precursor gi|12325080|gb|AAG52489.1|AC018364_7 unknown protein; 12187-10624 [Arabidopsis thaliana] gi|12597797|gb|AAG60109.1|AC073178_20 unknown protein [Arabidopsis thaliana] gi|17511220|dbj|BAB79236.1| AtMinE [Arabidopsis thaliana] gi|21618085|gb|AAM67135.1| unknown [Arabidopsis thaliana] gi|27754532|gb|AAO22713.1| unknown protein [Arabidopsis thaliana] gi|28394107|gb|AAO42461.1| unknown protein [Arabidopsis thaliana] gi|332196797|gb|AEE34918.1| bacterial MinE 1-like protein [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 179/227 (78%), Gaps = 13/227 (5%)

Query: 4   SGDLRVAATLAS--YHQHPLRSSLPSS--KVDFAGFPS------EITPKWPGMAIDNCSM 53
           SG LR++ATL S  +H H  R SLPSS  KVDF GF S      E     PG+AI   + 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 54  R-QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRRNSNA 112
           R Q K+ +R +GDY+LSP+P   E+ESFL NAINM FFDRLNLAWKI+FPS  +RR+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 113 RIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIY 172
           RIAKQRL+MILFSDRC VSDEAKRKIVNNI+HALSDFVEIES++KVQLNVSTD DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 173 SVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPD 219
           SVTVPVRRVKPEY D  + GTI NVEYKDT +  GSVDVRFDF+VP+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2007171	229	MINE1 "homologue of bacterial	0.986	0.947	0.692	5.9e-73
UNIPROTKB|Q3AF72	88	minE "Cell division topologica	0.331	0.829	0.25	0.00029
TIGR_CMR|CHY_0349	88	CHY_0349 "cell division topolo	0.331	0.829	0.25	0.00029

TAIR|locus:2007171 MINE1 "homologue of bacterial MinE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 160/231 (69%), Positives = 183/231 (79%)

Query:     1 MAIS-GDLRVAATLAS--YHQHPLRSSLPSS--KVDFAGFPSE-----ITPKW-PGMAID 49
             MA+S G LR++ATL S  +H H  R SLPSS  KVDF GF S       T K  PG+AI 
Sbjct:     1 MAMSSGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAIS 60

Query:    50 NCSMR-QSKLFSRISGDYKLSPNPISHEVESFLLNAINMSFFDRLNLAWKIVFPSPTTRR 108
               + R Q K+ +R +GDY+LSP+P   E+ESFL NAINM FFDRLNLAWKI+FPS  +RR
Sbjct:    61 RENTRGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRR 120

Query:   109 NSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDL 168
             +SNARIAKQRL+MILFSDRC VSDEAKRKIVNNI+HALSDFVEIES++KVQLNVSTD DL
Sbjct:   121 SSNARIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDL 180

Query:   169 GTIYSVTVPVRRVKPEYLDSYDVGTIANVEYKDTGETSGSVDVRFDFFVPD 219
             GTIYSVTVPVRRVKPEY D  + GTI NVEYKDT +  GSVDVRFDF+VP+
Sbjct:   181 GTIYSVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

GO:0032955 "regulation of barrier septum assembly" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0051117 "ATPase binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009706 "chloroplast inner membrane" evidence=IDA

UNIPROTKB|Q3AF72 minE "Cell division topological specificity factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 93 (37.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 19/76 (25%), Positives = 47/76 (61%)

Query:   107 RRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166
             ++NS   +AK+RL+++L  DR  VS E  + +  +++  ++ ++EI+ +  +++N+ +  
Sbjct:     8 QQNSKT-MAKERLRLVLVQDRTNVSPELLQNLKEDLIAVITKYMEIDEK-ALEVNIDSHE 65

Query:   167 DLGTIYSVTVPVRRVK 182
             D   + +  +P++ VK
Sbjct:    66 DQVALIA-NIPIKNVK 80

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0349 CHY_0349 "cell division topological specificity factor MinE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 93 (37.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 19/76 (25%), Positives = 47/76 (61%)

Query:   107 RRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT 166
             ++NS   +AK+RL+++L  DR  VS E  + +  +++  ++ ++EI+ +  +++N+ +  
Sbjct:     8 QQNSKT-MAKERLRLVLVQDRTNVSPELLQNLKEDLIAVITKYMEIDEK-ALEVNIDSHE 65

Query:   167 DLGTIYSVTVPVRRVK 182
             D   + +  +P++ VK
Sbjct:    66 DQVALIA-NIPIKNVK 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.38    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.13u 0.11s 19.24t   Elapsed:  00:00:01
  Total cpu time:  19.13u 0.11s 19.24t   Elapsed:  00:00:01
  Start:  Sat May 11 02:40:01 2013   End:  Sat May 11 02:40:02 2013

GO:0000910 "cytokinesis" evidence=ISS

GO:0000918 "barrier septum site selection" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C4Z7	MINE1_ARATH	No assigned EC number	0.6916	0.9727	0.9344	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012505001	SubName- Full=Chromosome undetermined scaffold_387, whole genome shotgun sequence; (225 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037716001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (333 aa)					•		•		0.577

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam03776	69	pfam03776, MinE, Septum formation topological spec	3e-09
PRK13987	91	PRK13987, PRK13987, cell division topological spec	2e-06
PRK13988	97	PRK13988, PRK13988, cell division topological spec	5e-05
TIGR01215	81	TIGR01215, minE, cell division topological specifi	5e-05
COG0851	88	COG0851, MinE, Septum formation topological specif	0.002

>gnl|CDD|217723 pfam03776, MinE, Septum formation topological specificity factor MinE

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 111 NARIAKQRLQMILFSDRCAVSDEA-KRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLG 169
           +A +AK+RLQ+IL  DR  +S E    ++   I+  +S +VEI+  DKV++ +  D D+ 
Sbjct: 1   SASVAKERLQIILAHDRADLSPEDYLPQLKEEILEVISKYVEID-PDKVEVQLERDDDV- 58

Query: 170 TIYSVTVPVRR 180
           +     +P+ R
Sbjct: 59  SALEANIPLPR 69

The E. coli minicell locus was shown to code for three gene products (MinC, MinD, and MinE) whose coordinate action is required for proper placement of the division septum. The minE gene codes for a topological specificity factor that, in wild-type cells, prevents the division inhibitor from acting at internal division sites while permitting it to block septation at polar sites. Length = 69

>gnl|CDD|237579 PRK13987, PRK13987, cell division topological specificity factor MinE; Provisional

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 108 RNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQD-KVQLNVSTDT 166
           + ++  +AK+RL++IL  DR  +S +    I  +I+  +S +VEI+++D  +++  S + 
Sbjct: 10  KPTSKDVAKERLKLILIHDRGDISPDVLEMIKEDILKVISKYVEIDNEDVDIKMTKSEEI 69

Query: 167 DLGTIYSV--TVPVRRVK 182
           D G   ++   +P++++K
Sbjct: 70  DEGMSPALIANIPIKKIK 87

Length = 91

>gnl|CDD|184441 PRK13988, PRK13988, cell division topological specificity factor MinE; Provisional

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 106 TRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD 165
            R+ ++A  A++RLQ++L  DR  +S E   ++   I+  ++ +VEI+ +   +  VS +
Sbjct: 12  GRQPASASTARERLQLVLAHDRADLSPELLEQMRKEILEVVARYVEIDPE---EGEVSLE 68

Query: 166 T-DLGTIYSVTVPVRRVKPE 184
           T D  T     +P+RRVK  
Sbjct: 69  TEDRMTALVANLPIRRVKRG 88

Length = 97

>gnl|CDD|188120 TIGR01215, minE, cell division topological specificity factor MinE

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/94 (20%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 87  MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHAL 146
           MS  +              +R+ ++A +AK RL++IL  +R  ++ E   ++   I+  +
Sbjct: 1   MSLLEFF-----------KSRKKNSAEVAKDRLKLILAHERAQLAPEYLEELRKEILEVI 49

Query: 147 SDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRR 180
           S +VEI   + V++++ +  D+ ++  + + +  
Sbjct: 50  SKYVEI-DPEMVEVSLESQGDM-SVLELNITLPE 81

This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites [Cellular processes, Cell division]. Length = 81

>gnl|CDD|223920 COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning]

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 20/102 (19%)

Query: 87  MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSD----EAKRKIVNNI 142
           MS FD              +R+ ++A  AK+RLQ+IL  +R A       E  RK    I
Sbjct: 1   MSLFDFF-----------FSRKKNSAETAKERLQLILAHERAAGLQPDYLEQLRK---EI 46

Query: 143 VHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKPE 184
           +  +S +V+I+  DKV++++  D  + +I  + + +  V   
Sbjct: 47  LEVISKYVQID-PDKVEVSLERDDRI-SILELNITLPEVSER 86

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PRK13988	97	cell division topological specificity factor MinE;	99.97
PRK13991	87	cell division topological specificity factor MinE;	99.96
PRK13987	91	cell division topological specificity factor MinE;	99.95
TIGR01215	81	minE cell division topological specificity factor	99.95
PRK13989	84	cell division topological specificity factor MinE;	99.95
COG0851	88	MinE Septum formation topological specificity fact	99.94
PRK00296	86	minE cell division topological specificity factor	99.93
PRK13990	90	cell division topological specificity factor MinE;	99.9
PF03776	70	MinE: Septum formation topological specificity fac	99.88

>PRK13988 cell division topological specificity factor MinE; Provisional

Probab=99.97  E-value=1.1e-31  Score=209.53  Aligned_cols=94  Identities=24%  Similarity=0.433  Sum_probs=86.0

Q ss_pred             HhHHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEee
Q 027649           85 INMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVST  164 (220)
Q Consensus        85 ~~M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~  164 (220)
                      .+|+||++||+           ++++|+++||+|||+||+|||++++|++|++||+||++||+|||+||+++ |+|++++
T Consensus         2 ~~~~~l~~lf~-----------~k~~Sa~~AK~RLk~iL~~dR~~~sp~~l~~mk~dIl~VIskYv~Id~~~-v~V~l~~   69 (97)
T PRK13988          2 TLRDLLEKLFG-----------RQPASASTARERLQLVLAHDRADLSPELLEQMRKEILEVVARYVEIDPEE-GEVSLET   69 (97)
T ss_pred             cHHHHHHHHhc-----------CCCCcHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHeeeCccc-eEEEEEe
Confidence            46899999985           56789999999999999999999999999999999999999999999996 9999999


Q ss_pred             CCCCceEEEEEEeccCcCCCccccCCc
Q 027649          165 DTDLGTIYSVTVPVRRVKPEYLDSYDV  191 (220)
Q Consensus       165 d~d~~tvL~anIPVrrvK~~~~~~~e~  191 (220)
                      +++. ++|+|||||+++|++++.+++.
T Consensus        70 ~~~~-~~L~~nIPi~~v~~~~~~~~~~   95 (97)
T PRK13988         70 EDRM-TALVANLPIRRVKRGEIKFKES   95 (97)
T ss_pred             CCCc-eEEEEEeeeeccccCCCCcCcc
Confidence            8874 7999999999999998876554

>PRK13991 cell division topological specificity factor MinE; Provisional

Probab=99.96  E-value=1.1e-29  Score=194.75  Aligned_cols=84  Identities=26%  Similarity=0.495  Sum_probs=77.8

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccc-cccCCcEEEEEeeC
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVE-IESQDKVQLNVSTD  165 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVe-ID~e~kVeV~l~~d  165 (220)
                      |+||++||+          +++++||++||+|||+||+|||++++|++|++||+||++||+|||+ ||+++ |+|+++++
T Consensus         1 M~~l~~~f~----------~k~~~Sa~~AKeRLqliLahdR~~~~p~~l~~lk~eil~VIsKYv~~Id~~~-i~V~l~~~   69 (87)
T PRK13991          1 MSFLDGLFG----------RKRDSSSELAKQRLLTVLVHDRVKLTPEMMEQMKADLAEVIKRYVPAIDAEA-IEVTLSRG   69 (87)
T ss_pred             CChHHHhhc----------CCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccCccc-eEEEEEeC
Confidence            799999986          2456899999999999999999999999999999999999999999 99996 99999998


Q ss_pred             CCCceEEEEEEeccCcC
Q 027649          166 TDLGTIYSVTVPVRRVK  182 (220)
Q Consensus       166 ~d~~tvL~anIPVrrvK  182 (220)
                      ++ .++|++|||+++++
T Consensus        70 ~~-~~~Le~NIpl~~~~   85 (87)
T PRK13991         70 EA-HDHLKADIPLRRTT   85 (87)
T ss_pred             CC-ceEEEEEeEeeccc
Confidence            77 48999999999998

>PRK13987 cell division topological specificity factor MinE; Provisional

Probab=99.95  E-value=9.6e-29  Score=190.94  Aligned_cols=86  Identities=24%  Similarity=0.575  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT  166 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~  166 (220)
                      |+||++|+            ++++||++||||||+||+|||++++|++|++||+||++||+|||+||+++ |+|++++++
T Consensus         1 M~~~~~f~------------~k~~Sa~~AKeRLq~iLa~dR~~~sp~~l~~lk~eIl~VI~kYv~Id~~~-v~i~l~~~~   67 (91)
T PRK13987          1 MDLFKFFS------------KKPTSKDVAKERLKLILIHDRGDISPDVLEMIKEDILKVISKYVEIDNED-VDIKMTKSE   67 (91)
T ss_pred             CchhHhhc------------CCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHheeeCccc-eEEEEEeCC
Confidence            67888653            35679999999999999999999999999999999999999999999996 999999865


Q ss_pred             CC----ceEEEEEEeccCcCCCc
Q 027649          167 DL----GTIYSVTVPVRRVKPEY  185 (220)
Q Consensus       167 d~----~tvL~anIPVrrvK~~~  185 (220)
                      +.    .++|.||||++++|+.+
T Consensus        68 ~~~~~~~~aL~anIPi~~~~~~~   90 (91)
T PRK13987         68 EIDEGMSPALIANIPIKKIKKKI   90 (91)
T ss_pred             cccCCCcceEEEEccchHhhhcc
Confidence            42    26899999999999865

>TIGR01215 minE cell division topological specificity factor MinE

Probab=99.95  E-value=2.5e-28  Score=184.28  Aligned_cols=81  Identities=25%  Similarity=0.516  Sum_probs=74.5

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCC
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDT  166 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~  166 (220)
                      |+||++|++           ++++||++||+|||+||+|||++++|+++++||+||++||+||++||+++ |+|++++++
T Consensus         1 M~l~~~f~~-----------~k~~Sa~~AKeRLq~iL~~dR~~~~p~~l~~mk~dil~VIskY~~id~~~-v~v~l~~~~   68 (81)
T TIGR01215         1 MSLLEFFKS-----------RKKNSAEVAKDRLKLILAHDRAQLAPEYLEELRKEILEVISKYVEIDPEM-VEVSLESQG   68 (81)
T ss_pred             CchHHHhhc-----------CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHheecchHh-EEEEEEeCC
Confidence            789998874           45589999999999999999999999999999999999999999999995 999999987


Q ss_pred             CCceEEEEEEeccC
Q 027649          167 DLGTIYSVTVPVRR  180 (220)
Q Consensus       167 d~~tvL~anIPVrr  180 (220)
                      +. ++|++|||+++
T Consensus        69 ~~-~~L~~nI~l~~   81 (81)
T TIGR01215        69 DM-SVLEANITLPE   81 (81)
T ss_pred             Ce-eEEEEEeEcCC
Confidence            74 89999999974

This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.

>PRK13989 cell division topological specificity factor MinE; Provisional

Probab=99.95  E-value=3.8e-28  Score=184.86  Aligned_cols=81  Identities=21%  Similarity=0.393  Sum_probs=74.8

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHHhccccccccCCcEEEEEee
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCA--VSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVST  164 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~--~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~  164 (220)
                      |+||++|++           ++++||++||+|||+||+|||++  ++|+++++||+||++||+|||+||+++ |+|++++
T Consensus         1 M~l~~~f~~-----------~k~~Sa~vAKeRLqiiLa~dR~~~~~~p~~l~~lk~dil~VIsKYv~Id~~~-v~i~l~~   68 (84)
T PRK13989          1 MSILSFLLG-----------EKKKTASVAKERLQIIIAHERVGGRQPPDYLPALQKELVAVISKYVKISPDD-IRVSLER   68 (84)
T ss_pred             CchHHHhhc-----------CCCCcHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHheeeCccc-eEEEEEe
Confidence            799999885           46789999999999999999987  899999999999999999999999996 9999999


Q ss_pred             CCCCceEEEEEEeccC
Q 027649          165 DTDLGTIYSVTVPVRR  180 (220)
Q Consensus       165 d~d~~tvL~anIPVrr  180 (220)
                      +++ .++|++||+++.
T Consensus        69 ~~~-~~~Le~nI~Lp~   83 (84)
T PRK13989         69 QDN-LEVLEVKIELPQ   83 (84)
T ss_pred             CCC-eEEEEEEeECCC
Confidence            887 489999999874

>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]

Probab=99.94  E-value=7e-27  Score=180.10  Aligned_cols=85  Identities=26%  Similarity=0.477  Sum_probs=77.5

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDR-CAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD  165 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR-~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d  165 (220)
                      |++|++|++           ++++||++||+|||+|||||| .+..|++++.||+||++||+|||+||++. |+|+++++
T Consensus         1 Msl~dff~~-----------r~~~Sa~~AkeRLQiilA~eR~~~~~pd~l~~Lr~eIl~VI~KYV~id~d~-v~v~~e~~   68 (88)
T COG0851           1 MSLFDFFFS-----------RKKNSAETAKERLQLILAHERAAGLQPDYLEQLRKEILEVISKYVQIDPDK-VEVSLERD   68 (88)
T ss_pred             CcHHHHHHh-----------cCCCcHHHHHHHHHHhhhhhhhcCCCcchHHHHHHHHHHHHHHHheeCccc-EEEEEcCC
Confidence            799999985           455999999999999999999 67799999999999999999999999995 99999998


Q ss_pred             CCCceEEEEEEeccCcCCC
Q 027649          166 TDLGTIYSVTVPVRRVKPE  184 (220)
Q Consensus       166 ~d~~tvL~anIPVrrvK~~  184 (220)
                      ++ .++|++|||+++.+..
T Consensus        69 ~~-~s~Le~ni~lp~~~~~   86 (88)
T COG0851          69 DR-ISILELNITLPEVSER   86 (88)
T ss_pred             CC-eEEEEEeccccccccc
Confidence            86 4899999999988754

>PRK00296 minE cell division topological specificity factor MinE; Reviewed

Probab=99.93  E-value=1.8e-26  Score=176.19  Aligned_cols=82  Identities=24%  Similarity=0.482  Sum_probs=74.1

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAV-SDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD  165 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~-SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d  165 (220)
                      |+||++|++           ++++|+++||+|||+||+|||+++ +|+++++||+||++||+||++||+++ |+|+++++
T Consensus         1 M~l~~~f~~-----------kk~~Sa~~AKeRLq~iL~~dR~~~~~p~~l~~lk~dIl~VIsKY~~Id~~~-v~i~l~~~   68 (86)
T PRK00296          1 MSLLDFFRS-----------RKKSTANVAKERLQIIVAHERSSRGEPDYLPQLRKEILEVIAKYVQIDPDK-VSVQLDKD   68 (86)
T ss_pred             CchHHhhcc-----------CCCCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHheecChhh-EEEEEEeC
Confidence            789997763           446899999999999999999998 59999999999999999999999996 99999988


Q ss_pred             CCCceEEEEEEeccCc
Q 027649          166 TDLGTIYSVTVPVRRV  181 (220)
Q Consensus       166 ~d~~tvL~anIPVrrv  181 (220)
                      ++. ++|++||+++.-
T Consensus        69 ~~~-~~Le~nI~lp~~   83 (86)
T PRK00296         69 GDI-STLELNVTLPEA   83 (86)
T ss_pred             CCe-EEEEEEEEcCCc
Confidence            874 799999999873

>PRK13990 cell division topological specificity factor MinE; Provisional

Probab=99.90  E-value=2.9e-24  Score=166.06  Aligned_cols=80  Identities=20%  Similarity=0.435  Sum_probs=68.4

Q ss_pred             HHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCC-------CCHHHHHHHHHHHHHHhccccccccCC--cEEE
Q 027649           90 FDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCA-------VSDEAKRKIVNNIVHALSDFVEIESQD--KVQL  160 (220)
Q Consensus        90 fd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~-------~SPd~Le~Lk~DILeVISKYVeID~e~--kVeV  160 (220)
                      |++||+.    |     ++++||++||+|||+||+|||++       ++|++|++||+||++||+|||+||+++  +|+|
T Consensus         2 l~~lf~~----~-----~k~~Sa~vAKeRLqiiLaheR~~~~~~~~~~~pd~L~~lk~eIl~VI~KYv~Id~~~i~dV~v   72 (90)
T PRK13990          2 LAKLFGL----S-----KKQQSASVAKERLQIIVAHQRSELHPRSSKISSHLLAELKDEIIEVVKKYVALSEENIRDIDL   72 (90)
T ss_pred             hhHhhCc----c-----cCCCcHHHHHHHhheeeeeecccCCcccccCCHHHHHHHHHHHHHHHHHheecChhccceEEE
Confidence            6677761    1     45689999999999999999986       467999999999999999999999996  2588


Q ss_pred             EEeeCCCCceEEEEEEecc
Q 027649          161 NVSTDTDLGTIYSVTVPVR  179 (220)
Q Consensus       161 ~l~~d~d~~tvL~anIPVr  179 (220)
                      +++++++ .++|++|||+.
T Consensus        73 ~le~~~~-~~~LevnI~~~   90 (90)
T PRK13990         73 KVEDSSK-NSTIEVNIPFN   90 (90)
T ss_pred             EEecCCC-eEEEEEeeecC
Confidence            9988777 47999999974

>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes

Probab=99.88  E-value=8.4e-25  Score=160.62  Aligned_cols=68  Identities=32%  Similarity=0.595  Sum_probs=58.9

Q ss_pred             cHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccC
Q 027649          111 NARIAKQRLQMILFSDRCAVSD--EAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRR  180 (220)
Q Consensus       111 Sa~IAKeRLKlILahDR~~~SP--d~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrr  180 (220)
                      ||++||+|||+||+|||++++|  ++|++||+||++||+||++|++++ |+|+++++++ .++|++|||+++
T Consensus         1 Sa~iAKeRLk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~~~~-v~v~l~~~~~-~~~L~~nIpl~~   70 (70)
T PF03776_consen    1 SADIAKERLKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEIDEED-VEVQLERDDD-MSVLEANIPLPR   70 (70)
T ss_dssp             HCHCSSCEEEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---CCC-EEEEEEECTT-EEEEEEEEEE--
T ss_pred             ChHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecCccc-EEEEEEECCC-ceEEEEEEEcCC
Confidence            6899999999999999999998  999999999999999999999996 9999998877 589999999985

In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2kxo_A	95	Cell division topological specificity factor; MINE	6e-09
3ku7_A	80	MINE, cell division topological specificity factor	3e-05

>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae} Length = 95

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 87  MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDR--CAVSDEAKRKIVNNIVH 144
           MS  + L             R+   A +A+ RLQ+I+  +R     + +    +   ++ 
Sbjct: 1   MSLIELL-----------FGRKQKTATVARDRLQIIIAQERAQEGQTPDYLPTLRKALME 49

Query: 145 ALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVKP 183
            LS +V +   D ++++      +  +  + + +   K 
Sbjct: 50  VLSKYVNVS-LDNIRISQEKQDGMDVLE-LNITLPEQKK 86

>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A Length = 80

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 86  NMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHA 145
           +MS FD               +   +A  A  RL++IL  +R       + ++   I+  
Sbjct: 3   HMSLFDFF-------------KNKGSAATATDRLKLILAKERTLNLPYME-EMRKEIIAV 48

Query: 146 LSDFVEIESQDKVQLNVSTDTD 167
           +  + +        L+ +   +
Sbjct: 49  IQKYTKSSDIHFKTLDSNQSVE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2kxo_A	95	Cell division topological specificity factor; MINE	99.94
3r9j_C	77	MINE, cell division topological specificity factor	99.9
3ku7_A	80	MINE, cell division topological specificity factor	99.88

>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}

Probab=99.94  E-value=2.6e-29  Score=193.83  Aligned_cols=86  Identities=17%  Similarity=0.354  Sum_probs=77.6

Q ss_pred             HHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEee
Q 027649           87 MSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRC--AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVST  164 (220)
Q Consensus        87 M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~--~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~  164 (220)
                      |+||++||+           ++++||++||||||+||+|||+  +++|++|++||+||++||+|||+||+++ |+|++++
T Consensus         1 M~l~~~f~~-----------kk~~Sa~vAKeRLqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~-v~V~l~~   68 (95)
T 2kxo_A            1 MSLIELLFG-----------RKQKTATVARDRLQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNVSLDN-IRISQEK   68 (95)
T ss_dssp             CCHHHHHTC-----------SSCCCSCCSSEEEEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCCCTTS-EEEEEEE
T ss_pred             CchHHHhcc-----------CCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheecchhh-eEEEEEe
Confidence            689998874           4568999999999999999998  5899999999999999999999999996 9999999


Q ss_pred             CCCCceEEEEEEeccCcCCCc
Q 027649          165 DTDLGTIYSVTVPVRRVKPEY  185 (220)
Q Consensus       165 d~d~~tvL~anIPVrrvK~~~  185 (220)
                      +++ .++|++|||+++.+...
T Consensus        69 ~~~-~~vL~~nIpl~~~~~~~   88 (95)
T 2kxo_A           69 QDG-MDVLELNITLPEQKKVL   88 (95)
T ss_dssp             ETT-EEEEEEEEEECCCCCCC
T ss_pred             CCC-cEEEEEEEEeCCCCccc
Confidence            887 58999999999877654

>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A

Probab=99.90  E-value=5.2e-25  Score=164.60  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=64.3

Q ss_pred             CcHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeC-CCCceEEEEEEeccC
Q 027649          110 SNARIAKQRLQMILFSDRC-AVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTD-TDLGTIYSVTVPVRR  180 (220)
Q Consensus       110 sSa~IAKeRLKlILahDR~-~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d-~d~~tvL~anIPVrr  180 (220)
                      +||++||+|||+||+|||+ +++|++|++||+||++||+|||+||+++ |+|+++++ ++ .++|++||+++.
T Consensus         2 ~Sa~vAKeRLqliLahdR~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~-v~v~l~~~~~~-~~vLe~nI~lp~   72 (77)
T 3r9j_C            2 NTANIAKERLQNIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEM-VTVQLEQKDGD-ISILELNVTLPE   72 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHTTGGGTTSCCCCSC-CCCEEEEETTT-EEEEEBCCEEC-
T ss_pred             CcHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhheecCccc-EEEEEEEcCCC-EEEEEEEEEcCC
Confidence            6899999999999999999 8999999999999999999999999996 99999998 56 589999999985

>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A

Probab=99.88  E-value=4.4e-25  Score=166.08  Aligned_cols=77  Identities=19%  Similarity=0.370  Sum_probs=56.0

Q ss_pred             hHHHHHHHhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEE-ee
Q 027649           86 NMSFFDRLNLAWKIVFPSPTTRRNSNARIAKQRLQMILFSDRCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNV-ST  164 (220)
Q Consensus        86 ~M~ffd~l~~aw~i~Fp~~~~kkksSa~IAKeRLKlILahDR~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l-~~  164 (220)
                      .|+||++| +            |++||++||+|||+||+|||+ ++|+++++||+||++||+|||+|  ++ |+|++ ++
T Consensus         3 ~M~l~~~f-~------------k~~Sa~vAKeRLqliLa~dR~-~~p~~l~~lk~eil~VIskYv~i--d~-v~V~l~e~   65 (80)
T 3ku7_A            3 HMSLFDFF-K------------NKGSAATATDRLKLILAKERT-LNLPYMEEMRKEIIAVIQKYTKS--SD-IHFKTLDS   65 (80)
T ss_dssp             --------------------------CCSSSCEEEEEEEEESS-CCCTTHHHHHHHHHHHHHHHHCC--CE-EEEECC--
T ss_pred             cccHhHhc-C------------CCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHcCc--cc-eEEEEEec
Confidence            38999944 2            468999999999999999995 89999999999999999999998  44 99999 77


Q ss_pred             CCCCceEEEEEEeccC
Q 027649          165 DTDLGTIYSVTVPVRR  180 (220)
Q Consensus       165 d~d~~tvL~anIPVrr  180 (220)
                      +++ .++|++||+++|
T Consensus        66 ~~~-~~vLe~nI~lp~   80 (80)
T 3ku7_A           66 NQS-VETIEVEIILPR   80 (80)
T ss_dssp             -CC-EEEEEEEEECC-
T ss_pred             CCC-EEEEEEEeecCC
Confidence            777 489999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1ev0a_	58	Cell division protein MinE topological specificity	99.32

>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cell division protein MinE topological specificity domain
superfamily: Cell division protein MinE topological specificity domain
family: Cell division protein MinE topological specificity domain
domain: Cell division protein MinE topological specificity domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=4.5e-13  Score=94.14  Aligned_cols=55  Identities=13%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccccccccCCcEEEEEeeCCCCceEEEEEEeccCcC
Q 027649          127 RCAVSDEAKRKIVNNIVHALSDFVEIESQDKVQLNVSTDTDLGTIYSVTVPVRRVK  182 (220)
Q Consensus       127 R~~~SPd~Le~Lk~DILeVISKYVeID~e~kVeV~l~~d~d~~tvL~anIPVrrvK  182 (220)
                      |.+..|++|++||+||++||+|||.|++++ |+|++++.++..++|++||-++.-+
T Consensus         1 R~~~~PDyLp~Lq~eil~VI~KyV~Id~d~-v~V~le~~~~~~svLElnI~lPe~~   55 (58)
T d1ev0a_           1 RSDAEPHYLPQLRKDILEVICKYVQIDPEM-VTVQLEQKDGDISILELNVTLPEAE   55 (58)
T ss_dssp             CGGGTTSSHHHHHHHHHHHHHHHSCCCGGG-EEEEEEEETTTEEEEEEEEEECCCC
T ss_pred             CCCCCcchHHHHHHHHHHHHHHhEeecHHH-eEEEEecCCCCEEEEEEEEEcCccc
Confidence            556689999999999999999999999996 9999985443247999999887655