Citrus Sinensis ID: 027653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccEEEEEEccccccEEcccccccEEEEcccEEEEEHHHHHHHHccccEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccEEEEEEEccccEEEEcccccEEEEccccEEEEEcHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maedtgdgstaemddyETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYeesgmdpltvsLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNEslwsrlsdpekMFVQRCIDDMEKHLEETVlsklpdnyqsvrrqsviseeddmvpepqldTFIACKARNRFVSlrladserplemerhDVSFVLYKVIEDkigadidlv
Flexible Loop (DISEMBL)
maedtgdgstaemddyeTLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNEslwsrlsdpEKMFVQRCIDDMEKHLEEtvlsklpdnyqsVRRQSviseeddmvpepQLDTFIACKARNRFVSLrladserplemerhdvSFVLYKVIedkigadidlv
Low Complexity Region (SEG)
MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Disordered region (IsUnstruct)
**************************LLKTAWRNEKAAPEILQFQAPLVKR********************DPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE**V****************************LDTFIACKARNRFVSLRLADS***LEMERHDVSFVLYKVIEDKIGAD****
Disordered Region (DISOPRED)
******************LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQL****************TVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVR*************EPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Disordered Region (DISEMBL)
**********AEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Disordered Region (DISPRO)
****************ETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQ*****EDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLxxxxxxxxxxxxxxxxxxxxxGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGADIDLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q99LZ3	223	DNA replication complex G	yes	no	0.736	0.726	0.325	1e-17
Q499W2	223	DNA replication complex G	yes	no	0.804	0.793	0.315	1e-16
Q9BRT9	223	DNA replication complex G	yes	no	0.722	0.713	0.315	1e-15
A2VE40	223	DNA replication complex G	yes	no	0.736	0.726	0.318	1e-15
Q9P7C8	214	DNA replication complex G	yes	no	0.809	0.831	0.303	7e-15
Q55EA2	211	DNA replication complex G	yes	no	0.890	0.928	0.253	2e-12
Q2HE71	221	DNA replication complex G	N/A	no	0.786	0.782	0.293	4e-11
Q4IQM6	221	DNA replication complex G	no	no	0.804	0.800	0.274	9e-10
Q6CKF3	292	DNA replication complex G	yes	no	0.604	0.455	0.3	2e-08
Q6CE80	260	DNA replication complex G	yes	no	0.654	0.553	0.281	1e-07

>sp|Q99LZ3|SLD5_MOUSE DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 19/181 (10%)

Query: 6   GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
            DG + EM     L      E L+ AW NEK APE+L+ +A +V+   EQ++ MEE +  
Sbjct: 12  SDGGSEEM----VLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRR 67

Query: 66  YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSR-----LSD 120
            ++     L VS+++M+++R  ++L SYLR RL K+EK+  +I + E + S      LS 
Sbjct: 68  AKKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSP 124

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            E +F +  +D  E H +   L  +P N Q V            VP+P LD+++  + + 
Sbjct: 125 EEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLLRA-------VPKPDLDSYVFLRVKE 177

Query: 181 R 181
           R
Sbjct: 178 R 178

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.
Mus musculus (taxid: 10090)

>sp|Q499W2|SLD5_RAT DNA replication complex GINS protein SLD5 OS=Rattus norvegicus GN=Gins4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 23/200 (11%)

Query: 23  TDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLY 79
           T AEL   L+ AW NEK APE+L+ ++ +V+   EQ++ MEE +   ++     L VS++
Sbjct: 22  TPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGD---LKVSIH 78

Query: 80  QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSDPEKMFVQRCIDDME 134
           +M+++R  ++L SYLR RL K+EK+  +I + E        S LS  E +F +  +D  E
Sbjct: 79  RMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYMDHTE 138

Query: 135 KHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRL---ADSE 191
            H +   L  +P N Q V            VP+P LD+++  + + R  ++ +   AD +
Sbjct: 139 THFKNVALKHMPPNLQKVDLMRA-------VPKPDLDSYVFLRVKERQENILVEPEADEQ 191

Query: 192 RP--LEMERHDVSFVLYKVI 209
           R   +++E      + YK I
Sbjct: 192 RDYVIDLEEGSQHLIRYKTI 211

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. SLD5 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Rattus norvegicus (taxid: 10116)

>sp|Q9BRT9|SLD5_HUMAN DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 25/184 (13%)

Query: 6   GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
            DG + E+     L      E L+ AW NEK APE+L+ +  +V+   EQ++ MEE +  
Sbjct: 12  SDGGSEEV----VLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRR 67

Query: 66  YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
              +  + L VS++QM+++R  ++L SYLR RL K+EK+  ++ + E        S LS 
Sbjct: 68  ---AKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSP 124

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
            E  F +  + + E +L+   L  +P N Q V          D+   VP+P LD+++  +
Sbjct: 125 EELAFAREFMANTESYLKNVALKHMPPNLQKV----------DLFRAVPKPDLDSYVFLR 174

Query: 178 ARNR 181
            R R
Sbjct: 175 VRER 178

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|A2VE40|SLD5_BOVIN DNA replication complex GINS protein SLD5 OS=Bos taurus GN=GINS4 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 20/182 (10%)

Query: 8   GSTAEMDDYETLMSTTDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE 64
           G  ++ D  E ++  T AEL   L+ AW NEK APE+L+ ++ +V+   EQ++ MEE ++
Sbjct: 9   GQDSDGDSEEVIL--TPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENLK 66

Query: 65  EYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDP--- 121
             ++     L VS++QM+++R  F+L SYLR RL K+EK+  +  + E        P   
Sbjct: 67  RAKKGD---LKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREEEPPILS 123

Query: 122 --EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179
             E +F +  + + E +L++T L  +P N Q V            VP+P LD ++  + +
Sbjct: 124 PEELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLRT-------VPKPDLDAYVFLRVK 176

Query: 180 NR 181
            R
Sbjct: 177 ER 178

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q9P7C8|SLD5_SCHPO DNA replication complex GINS protein sld5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sld5 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 20/198 (10%)

Query: 23  TDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE-EYEESGMDPLTVSLYQM 81
            D E L T W NE+ AP++L F   +V R  ++I+   ET++     S        L Q 
Sbjct: 18  NDYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQT 77

Query: 82  DLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETV 141
           +L+R  F+LRSY+R R+ K++KY  YI  + +L   LS PE+ ++ R    + +H  ++ 
Sbjct: 78  ELERVKFVLRSYMRTRINKIDKYAQYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYMDSF 137

Query: 142 LSKLPDNYQSVRRQSVISEEDD------MVPEPQLDTFIACKARNRFV--SLRLADSERP 193
           L ++P         + +++ DD      MV  P +DT + C   N  V  + R++++E  
Sbjct: 138 LREVP---------AKMNKLDDKVGNLSMVASPDMDTAVFCVV-NESVEENFRVSENEY- 186

Query: 194 LEMERHDVSFVLYKVIED 211
           + +++ DV  + Y VI D
Sbjct: 187 ITLDKGDVLILRYSVISD 204

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation and is required for bir1 localization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 OS=Dictyostelium discoideum GN=gins4 PE=3 SV=2

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 109/217 (50%), Gaps = 21/217 (9%)

Query: 15  DYETLMSTTDAEL-----LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEES 69
           +Y    +T + EL     LK AW NEK AP +L ++  ++K   E+I+  E        +
Sbjct: 5   EYGDFNNTNNKELSLLDKLKKAWINEKYAPNLLNYEDVIIKEVMEKIEEKESLCASAISN 64

Query: 70  GMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIW---KNESL--WSRLSDPEKM 124
                T ++Y+M+++R  ++++ YL  R++K++K+   I    +N+    +  LS+ E  
Sbjct: 65  INLQFTANIYEMEIERLKYIIKCYLVQRIKKIDKFYSSILLEIENDEYDSYKLLSEFEIN 124

Query: 125 FVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVS 184
           + Q+    M+ + + T+L+ +P ++Q +   S        +  P L+TF+ CK R     
Sbjct: 125 YCQKYKALMDGYFKNTLLNSIPKDFQKMDSNS--------INRPFLNTFVFCKPREDLGD 176

Query: 185 LRLADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
             L D E  ++ ++  + F+ Y  I+  + G  +DL+
Sbjct: 177 F-LVDDE-TIDFKKTSIYFLKYLPIKSLVEGGKMDLI 211

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

>sp|Q2HE71|SLD5_CHAGB DNA replication complex GINS protein SLD5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SLD5 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 11/184 (5%)

Query: 24  DAELLKTAWRNEKAAPEILQFQA-PLVKRAKEQIQLMEETVEEYEESGMDPLT---VSLY 79
           D + L  AW  E++APE+L + A  L +R  + I+   E VEE     MDP T   + + 
Sbjct: 23  DLQELTRAWIAERSAPELLAWPADGLFERINDNIKQQIEKVEEMT-GDMDPKTNFALIVI 81

Query: 80  QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEE 139
           Q +L+R  +L+RSYLR R+ K++++  +    + L +RLS+ E  +  R    +  H   
Sbjct: 82  QTELERYRYLVRSYLRARIAKIDRHTLHYLSTDDLRARLSEMELAYATRHQALLHNHYLS 141

Query: 140 TVLSKLPDNYQSVRRQSV-ISEEDDMVPEPQLDTFIACKA-RNRFVSLRLADSERPLEME 197
           + LS  P N Q++   +  IS    M+  P L++ +  +A ++  V  R  D++   +++
Sbjct: 142 SFLSSFPANLQNLNDAAAGIS----MIETPDLESAVFIRALKDTPVEARGVDTDAYADLK 197

Query: 198 RHDV 201
             D+
Sbjct: 198 ESDI 201

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q4IQM6|SLD5_GIBZE DNA replication complex GINS protein SLD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SLD5 PE=3 SV=2

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 24  DAELLKTAWRNEKAAPEILQFQA-PLVKRAKEQIQLMEETVEEYEESGMDPLT---VSLY 79
           D + L   W  E++APE+L++    L +R   +I+   E VE+     MDP T   + + 
Sbjct: 23  DLQALTRLWVAERSAPELLEWPTDGLFERVNARIKTQIEKVEDMT-GDMDPKTNFALIVI 81

Query: 80  QMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEE 139
           Q +L+R  FL+RS+LR RL K++K+  +   ++ L  RLS  E  +  +    +  H   
Sbjct: 82  QTELERYKFLMRSFLRARLAKIDKHTLHYLSSQELRDRLSPTELSYATKHQALLHNHYLS 141

Query: 140 TVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKA-RNRFVSLRLADSERPLEMER 198
           + L+  P   Q++      +    M+  P LDT +  +  R++ V  +  D++  L    
Sbjct: 142 SFLASFPQQLQNLND---TAGNISMIDSPDLDTAVFIRMLRDKDVYGKGTDADITLPATN 198

Query: 199 HDVSFV 204
            DV  +
Sbjct: 199 GDVLII 204

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q6CKF3|SLD5_KLULA DNA replication complex GINS protein SLD5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SLD5 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 27/160 (16%)

Query: 12  EMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRA----KEQIQLMEET----V 63
           ++DDY+ L+         T W+NE+ +PE+L +   L+ R     +E+I+L+E      +
Sbjct: 58  KIDDYQKLI---------THWKNERMSPELLPYPHHLMTRTLIRIQERIELIETLSMGYL 108

Query: 64  EEYEESGMDP-LTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWK-----NESLWSR 117
           E+ +E  +D  L +   + +L+R  FL+RS++R RL K++KY  Y+ +     N +  SR
Sbjct: 109 EDNQELTVDSKLPLLCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSR 168

Query: 118 L----SDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVR 153
           L    S  E  +  +  D + K     VL  LP+  Q+V 
Sbjct: 169 LDLLMSKEEVKYHMKHSDILLKLFNNAVLKHLPEELQAVN 208

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6CE80|SLD5_YARLI DNA replication complex GINS protein SLD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SLD5 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 9/153 (5%)

Query: 24  DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDP-----LTVSL 78
           D + L  +W  E+ +P +L  +  L+ R  +++QL  E +EE +   M P     L + +
Sbjct: 63  DIKELTHSWVTERMSPTLLPTKEALLFRILKRVQLQIEVIEE-KSIDMSPDTDVKLELLI 121

Query: 79  YQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE 138
            + +L+R  +L+RSYLRVRL K++  M Y   +      +S  E+M++ R    ++    
Sbjct: 122 VETELERIKYLIRSYLRVRLLKIDNSMEYYQSSPLDRMNMSQTERMYLNRHYALLKNLYA 181

Query: 139 ETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLD 171
              ++  PD   S+++ +  S    MV EP +D
Sbjct: 182 HQFMNTFPD---SLKQMNDSSGSASMVQEPNMD 211

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
297792159	220	hypothetical protein ARALYDRAFT_331329 [	0.981	0.981	0.616	2e-71
225431990	220	PREDICTED: DNA replication complex GINS	0.995	0.995	0.606	4e-71
30695589	220	GINS complex subunit 4 [Arabidopsis thal	0.981	0.981	0.611	3e-70
297792123	220	predicted protein [Arabidopsis lyrata su	0.981	0.981	0.607	2e-69
224099123	220	predicted protein [Populus trichocarpa]	0.963	0.963	0.613	5e-67
255556422	195	conserved hypothetical protein [Ricinus	0.795	0.897	0.683	2e-65
388508754	227	unknown [Medicago truncatula]	1.0	0.969	0.563	4e-65
449433073	198	PREDICTED: DNA replication complex GINS	0.868	0.964	0.612	1e-62
449480396	198	PREDICTED: DNA replication complex GINS	0.868	0.964	0.607	3e-62
356526033	226	PREDICTED: DNA replication complex GINS	1.0	0.973	0.548	2e-61

>gi|297792159|ref|XP_002863964.1| hypothetical protein ARALYDRAFT_331329 [Arabidopsis lyrata subsp. lyrata] gi|297309799|gb|EFH40223.1| hypothetical protein ARALYDRAFT_331329 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/224 (61%), Positives = 174/224 (77%), Gaps = 8/224 (3%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA ++  G +A   DYETLMST+D ELLK AWRNEKAAPEILQ++  LV+RAKEQI+L+E
Sbjct: 1   MASNSEAGGSA---DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVQRAKEQIELVE 57

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           ET+E+Y E+G+DPL VSLYQMDLDRA FLLRSYLRVRL K+EK+MF+  K+E    RLS+
Sbjct: 58  ETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLKSEEAERRLSE 117

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            EK+F  RC DD+ KH EETVL KLP+NYQSV +QS+ISE DDMVP+P LDTF+ C+++N
Sbjct: 118 QEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRSKN 177

Query: 181 RFVSLRL---ADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
            FVSL L    +S   +EMER D+ F+ YK+++  I    IDL+
Sbjct: 178 -FVSLNLYEEGESPETVEMERGDLYFIRYKIVKGAIESGQIDLI 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431990|ref|XP_002279153.1| PREDICTED: DNA replication complex GINS protein SLD5 [Vitis vinifera] gi|296083231|emb|CBI22867.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 172/221 (77%), Gaps = 2/221 (0%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA  + +GS    DDYE+L++TTD ELLK AWRNEKAAPEIL FQ  LV+R++EQIQLME
Sbjct: 1   MASGSEEGSGFPADDYESLIATTDVELLKRAWRNEKAAPEILHFQTALVQRSREQIQLME 60

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           ETVEE+ E+G DPLTVSLYQMDLDR  FLLRSYLR+RLQK+EKYMF+I K + +WSRLS+
Sbjct: 61  ETVEEFGENGTDPLTVSLYQMDLDRTQFLLRSYLRIRLQKIEKYMFHILKTD-VWSRLSE 119

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            E+ F +RC DDME+HLE++VLS+LPD YQS+ +QSV SEEDDMVPEP+LDTF+ CK++ 
Sbjct: 120 QEQKFAKRCTDDMERHLEQSVLSRLPDGYQSILKQSVASEEDDMVPEPRLDTFVFCKSKG 179

Query: 181 RFVSLRLADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
              + +L DS+  +++   D+  + Y  ++  I    IDLV
Sbjct: 180 SIEAFQLDDSKEVVDLVADDLYILRYNSVKPLIESGQIDLV 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695589|ref|NP_199712.2| GINS complex subunit 4 [Arabidopsis thaliana] gi|34146798|gb|AAQ62407.1| At5g49010 [Arabidopsis thaliana] gi|62319442|dbj|BAD94796.1| hypothetical protein [Arabidopsis thaliana] gi|332008373|gb|AED95756.1| GINS complex subunit 4 [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/224 (61%), Positives = 172/224 (76%), Gaps = 8/224 (3%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA ++  G +A   DYETLMST+D ELLK AWRNEKAAPEILQ++  LV RAKEQI+L+E
Sbjct: 1   MASNSEAGGSA---DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVE 57

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           ET+E+Y E+G+DPL VSLYQMDLDRA FLLRSYLRVRL K+EK+MF+   +E    RLS+
Sbjct: 58  ETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRLSE 117

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            EK+F  RC DD+ KH EETVL KLP+NYQSV +QS+ISE DDMVP+P LDTF+ C+++N
Sbjct: 118 QEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRSKN 177

Query: 181 RFVSLRL---ADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
            FVSL L    +S   +EMER D+ F+ YK+++  I    IDL+
Sbjct: 178 -FVSLNLYEEGESPETVEMERGDLYFIRYKIVKRAIESGQIDLI 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792123|ref|XP_002863946.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309781|gb|EFH40205.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/224 (60%), Positives = 171/224 (76%), Gaps = 8/224 (3%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA ++  G +A   DYETLMST+D ELLK AWRNEKAAPEILQ++  LV RAKEQI+L+E
Sbjct: 1   MASNSEAGGSA---DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVE 57

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           ET+E+Y E+G+DPL VSLYQMDLDR  FLLRSYLRVRL K+EK+MF+  K+E    RLS+
Sbjct: 58  ETIEDYVENGIDPLVVSLYQMDLDRTQFLLRSYLRVRLLKIEKFMFHNLKSEEAERRLSE 117

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            EK+F  RC DD+ KH EETVL KLP+NYQSV +QS+ISE DD VP+P LDTF+ C+++N
Sbjct: 118 QEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDTVPQPHLDTFVVCRSKN 177

Query: 181 RFVSLRL---ADSERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
            FVSL L    +S   +EMER D+ F+ YK+++  I    IDL+
Sbjct: 178 -FVSLSLYEEGESPETVEMERGDLYFIRYKIVKRAIESGQIDLI 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099123|ref|XP_002311380.1| predicted protein [Populus trichocarpa] gi|222851200|gb|EEE88747.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 161/215 (74%), Gaps = 3/215 (1%)

Query: 9   STAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEE 68
           S + MDDYETL+STTD ELLK AWRNEKAAPEILQF++ LV+R KEQI+L E+ VE  E 
Sbjct: 6   SASVMDDYETLISTTDVELLKRAWRNEKAAPEILQFESSLVQRIKEQIELAEQNVEISEA 65

Query: 69  SGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQR 128
           + +DPLTVSLYQMDLDR  FLLRSYLRVRLQK+EKY+FY+ K +   +RLS  E+MF +R
Sbjct: 66  NNIDPLTVSLYQMDLDRTQFLLRSYLRVRLQKIEKYLFYVLKTDEYLNRLSKQEQMFARR 125

Query: 129 CIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLA 188
           C DD+  HL+ETVL+KLPDNYQS+ +QS+ SEEDDMVP P+LDTF+ CKA+     L   
Sbjct: 126 CTDDLGSHLDETVLAKLPDNYQSILKQSITSEEDDMVPVPRLDTFVICKAKQYLSGLDFE 185

Query: 189 D--SERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
              S    EMER  ++FV YK I+  +    IDLV
Sbjct: 186 PEYSMEITEMERDLLTFVCYKFIKKPLENGKIDLV 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556422|ref|XP_002519245.1| conserved hypothetical protein [Ricinus communis] gi|223541560|gb|EEF43109.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 149/177 (84%), Gaps = 2/177 (1%)

Query: 5   TGDGSTAE--MDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEET 62
           +G+GS +   MDDYETL+STTD ELLK AWRNEKAAPEILQ++A LV+R KEQI+L E+ 
Sbjct: 6   SGEGSMSATLMDDYETLISTTDVELLKRAWRNEKAAPEILQYEASLVQRIKEQIELAEQN 65

Query: 63  VEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPE 122
           VE +E  G+DPLTVSLYQMDLDRA FLLRSYLRVRLQK+E+Y+F+I  N++  +RLSD E
Sbjct: 66  VEIFETDGIDPLTVSLYQMDLDRAQFLLRSYLRVRLQKIEEYLFHILGNDAHRNRLSDQE 125

Query: 123 KMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179
           ++F +RC +D+  HL+ETVL+KLPDNYQS  RQS+ SEEDDMVP P+LDTF+ CKAR
Sbjct: 126 QIFAERCENDLRNHLDETVLAKLPDNYQSTLRQSITSEEDDMVPAPRLDTFVICKAR 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508754|gb|AFK42443.1| unknown [Medicago truncatula]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 166/227 (73%), Gaps = 7/227 (3%)

Query: 1   MAEDTGDGSTAEM-DDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLM 59
           M   + +G  + + DDY+ L+STTD ELLK AWRNEKAAPEIL+F++ L+ R K QI+LM
Sbjct: 1   MGSRSAEGEQSSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLINRVKGQIELM 60

Query: 60  EETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLS 119
           EETVEE    G DPL+VSLYQMDLDR  FLLRSYLR+R+ K+EKYMF+I K + LW+RLS
Sbjct: 61  EETVEEKLSVGSDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTQELWNRLS 120

Query: 120 DPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179
             EK+F +RC DD+++HLE +VLSKLP+NYQS  RQSVISEEDDMVPEP+LDTF+ C+++
Sbjct: 121 RDEKLFTERCTDDLKEHLESSVLSKLPENYQSYERQSVISEEDDMVPEPRLDTFVLCRSK 180

Query: 180 NRFVSLRLADS-----ERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
                ++L D       +  EME   + F+ YK I+  +    IDL+
Sbjct: 181 EYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433073|ref|XP_004134322.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Cucumis sativus]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 143/191 (74%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA + G  S ++ DD+ET   TTD E LK AWRNEKAAPEIL ++A LV R KEQIQ ME
Sbjct: 1   MASNLGGASISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAME 60

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           +T+EEY  SG+DPL VSLYQMDLDR  FLLRSY+R RLQK+EKYM YI K++ L+ RLS 
Sbjct: 61  DTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRLSR 120

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            E  F  RC  DM+KH +E+VLSKLP+NYQ + +QS+ SEEDDMVPEP LDTF+ CK++ 
Sbjct: 121 EEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSKE 180

Query: 181 RFVSLRLADSE 191
               ++L D E
Sbjct: 181 YLEHIQLEDEE 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480396|ref|XP_004155882.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Cucumis sativus]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 143/191 (74%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA + G  S ++ DD+ET   TTD E LK AWRNEKAAPEIL ++A LV R KEQIQ ME
Sbjct: 1   MASNLGGASISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAME 60

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           +T+EEY  SG+DPL VSLYQMDLDR  FLLRSY+R RLQK+EKYM YI K++ L+ RLS 
Sbjct: 61  DTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRLSR 120

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            E  F  RC  DM+KH +E+VLSKLP+NYQ + +QS+ SEEDDMVPEP LDTF+ C+++ 
Sbjct: 121 EEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCRSKE 180

Query: 181 RFVSLRLADSE 191
               ++L D E
Sbjct: 181 YLEHIQLEDEE 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526033|ref|XP_003531624.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Glycine max]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 161/226 (71%), Gaps = 6/226 (2%)

Query: 1   MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
           MA  +     +  DDYETL++TTD ELLK AWRNEKAAPEIL++++ LV R  + IQLME
Sbjct: 1   MASSSAAEGVSMDDDYETLIATTDVELLKRAWRNEKAAPEILRYESKLVSRVNKVIQLME 60

Query: 61  ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
           E VEE    G DPL+VSLYQMDLDR  FLLRSYLR+R+QK+EKY+F+I K E L +RLS 
Sbjct: 61  EIVEEKSSGGTDPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYVFHIQKTEELRNRLSK 120

Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
            EK F + C +D+E+HL+E+VLSKLP +Y+SV RQS +SEEDDMVPEPQLDTF+ C+++ 
Sbjct: 121 YEKDFAKMCENDLEQHLDESVLSKLPKDYKSVLRQSSMSEEDDMVPEPQLDTFVLCRSKE 180

Query: 181 RFVSLRLADS-----ERPLEMERHDVSFVLYKVIEDKI-GADIDLV 220
               ++L D       +  EME   + F+ YK I+  +    IDL+
Sbjct: 181 YLTGIQLEDGPVDDRSKLFEMEPGVLHFICYKSIKALVESGKIDLL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2154329	220	SLD5 "AT5G49010" [Arabidopsis	0.981	0.981	0.616	1.1e-66
MGI|MGI:1923847	223	Gins4 "GINS complex subunit 4	0.818	0.807	0.320	4.4e-20
RGD|1307397	223	Gins4 "GINS complex subunit 4	0.872	0.860	0.291	7.2e-20
UNIPROTKB|Q499W2	223	Gins4 "DNA replication complex	0.872	0.860	0.291	7.2e-20
UNIPROTKB|E2R2C7	224	GINS4 "Uncharacterized protein	0.877	0.861	0.286	1.2e-19
UNIPROTKB|F1SE31	223	GINS4 "Uncharacterized protein	0.863	0.852	0.306	1.9e-19
UNIPROTKB|F6X4M2	223	GINS4 "Uncharacterized protein	0.872	0.860	0.286	2.5e-19
UNIPROTKB|A2VE40	223	GINS4 "DNA replication complex	0.945	0.932	0.289	3.1e-19
UNIPROTKB|Q9BRT9	223	GINS4 "DNA replication complex	0.872	0.860	0.286	5.1e-19
POMBASE|SPBP4H10.21c	214	sld5 "GINS complex subunit Sld	0.831	0.855	0.303	1.1e-18

TAIR|locus:2154329 SLD5 "AT5G49010" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 138/224 (61%), Positives = 173/224 (77%)

Query:     1 MAEDTGDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLME 60
             MA ++  G +A   DYETLMST+D ELLK AWRNEKAAPEILQ++  LV RAKEQI+L+E
Sbjct:     1 MASNSEAGGSA---DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVE 57

Query:    61 ETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSD 120
             ET+E+Y E+G+DPL VSLYQMDLDRA FLLRSYLRVRL K+EK+MF+   +E    RLS+
Sbjct:    58 ETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRLSE 117

Query:   121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARN 180
              EK+F  RC DD+ KH EETVL KLP+NYQSV +QS+ISE DDMVP+P LDTF+ C+++N
Sbjct:   118 QEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRSKN 177

Query:   181 RFVSLRL-ADSERP--LEMERHDVSFVLYKVIEDKI-GADIDLV 220
              FVSL L  + E P  +EMER D+ F+ YK+++  I    IDL+
Sbjct:   178 -FVSLNLYEEGESPETVEMERGDLYFIRYKIVKRAIESGQIDLI 220

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0000811 "GINS complex" evidence=ISS

GO:0006270 "DNA replication initiation" evidence=RCA;TAS

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

MGI|MGI:1923847 Gins4 "GINS complex subunit 4 (Sld5 homolog)" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 65/203 (32%), Positives = 110/203 (54%)

Query:    20 MSTTDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTV 76
             M  T AEL   L+ AW NEK APE+L+ +A +V+   EQ++ MEE +   ++     L V
Sbjct:    19 MVLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRRAKKGD---LKV 75

Query:    77 SLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSR-----LSDPEKMFVQRCID 131
             S+++M+++R  ++L SYLR RL K+EK+  +I + E + S      LS  E +F +  +D
Sbjct:    76 SIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSPEEFVFAKEYMD 135

Query:   132 DMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRL---A 188
               E H +   L  +P N Q V    ++      VP+P LD+++  + + R  ++ +   A
Sbjct:   136 HTETHFKNVALKHMPPNLQKV---DLLRA----VPKPDLDSYVFLRVKERQENILVEPEA 188

Query:   189 DSERP--LEMERHDVSFVLYKVI 209
             D +R   +++E      + YK I
Sbjct:   189 DEQRDYVIDLEVGSQHLIRYKTI 211

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1307397 Gins4 "GINS complex subunit 4 (Sld5 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 62/213 (29%), Positives = 111/213 (52%)

Query:     8 GSTAEMDDYETLMSTTDA-ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY 66
             G  ++    E +++  +  E L+ AW NEK APE+L+ ++ +V+   EQ++ MEE +   
Sbjct:     9 GQDSDEGSEEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRA 68

Query:    67 EESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSDP 121
             ++     L VS+++M+++R  ++L SYLR RL K+EK+  +I + E        S LS  
Sbjct:    69 KKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPE 125

Query:   122 EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNR 181
             E +F +  +D  E H +   L  +P N Q V            VP+P LD+++  + + R
Sbjct:   126 EFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLMRA-------VPKPDLDSYVFLRVKER 178

Query:   182 FVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
               ++ +   AD +R   +++E      + YK I
Sbjct:   179 QENILVEPEADEQRDYVIDLEEGSQHLIRYKTI 211

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q499W2 Gins4 "DNA replication complex GINS protein SLD5" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 62/213 (29%), Positives = 111/213 (52%)

Query:     8 GSTAEMDDYETLMSTTDA-ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY 66
             G  ++    E +++  +  E L+ AW NEK APE+L+ ++ +V+   EQ++ MEE +   
Sbjct:     9 GQDSDEGSEEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRA 68

Query:    67 EESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSDP 121
             ++     L VS+++M+++R  ++L SYLR RL K+EK+  +I + E        S LS  
Sbjct:    69 KKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPE 125

Query:   122 EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNR 181
             E +F +  +D  E H +   L  +P N Q V            VP+P LD+++  + + R
Sbjct:   126 EFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLMRA-------VPKPDLDSYVFLRVKER 178

Query:   182 FVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
               ++ +   AD +R   +++E      + YK I
Sbjct:   179 QENILVEPEADEQRDYVIDLEEGSQHLIRYKTI 211

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2R2C7 GINS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/213 (28%), Positives = 113/213 (53%)

Query:     8 GSTAEMDDYETLMSTTDA-ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY 66
             G  ++ D  E +++  +  E L+ AW NEK APE+L+ ++ +V+   EQ+  MEE +   
Sbjct:     9 GQDSDADSEEVVLTPAELIEKLEQAWMNEKFAPELLESKSEIVECVMEQLDHMEENLRRA 68

Query:    67 EESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESL-----WSRLSDP 121
             ++     L VS+++M+++R  ++L SYLR RL K+EK+  +I + E        S LS  
Sbjct:    69 KKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTPREGELSSLSPE 125

Query:   122 EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNR 181
             E +F ++ + + E +L+   L  +P N Q      V+      VP+P LD+++  + + R
Sbjct:   126 ELIFAKQYMANTETYLKNVALKHMPPNLQ------VVDLLRSAVPKPDLDSYVFLRVKER 179

Query:   182 FVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
               ++ +    D +R   +++E      + YK I
Sbjct:   180 QENILVEPETDEQRDYVIDLEEGSQHLIRYKTI 212

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SE31 GINS4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 66/215 (30%), Positives = 113/215 (52%)

Query:     8 GSTAEMDDYETLMSTTDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE 64
             G  ++ D  E ++  T AEL   L+ AW NEK APE+L+ ++ +V+   EQ+  MEE + 
Sbjct:     9 GQDSDGDSEEVVL--TPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLDHMEENLR 66

Query:    65 EYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLS 119
               ++     L VS++QM+++R  F+L SYLR RL K+EK+  ++ + E        S LS
Sbjct:    67 RAKKGD---LKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLS 123

Query:   120 DPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR 179
               E  F Q  + + E +L+   L  +P N Q V    ++      VP+P LD+++  + +
Sbjct:   124 PEEFAFAQEYMVNTENYLKNVALKHMPPNLQKV---DLLRA----VPKPDLDSYVFLRVK 176

Query:   180 NRFVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
              R  ++ +    D +R   +++E      + YK I
Sbjct:   177 ERQENILVEPETDEQRDYVIDLEEGSQHLIRYKTI 211

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6X4M2 GINS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 61/213 (28%), Positives = 114/213 (53%)

Query:     8 GSTAEMDDYETLMSTTDA-ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY 66
             G  ++ D  E +++  +  E L+ AW NEK APE+L+ ++ +V+   EQ+  MEE +   
Sbjct:     9 GQDSDADSEEVVLTPAELIEKLEQAWMNEKFAPELLESKSEIVECVMEQLDHMEENLRRA 68

Query:    67 EESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESL-----WSRLSDP 121
             ++     L VS+++M+++R  ++L SYLR RL K+EK+  +I + E        S LS  
Sbjct:    69 KKGD---LKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTPREGELSSLSPE 125

Query:   122 EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNR 181
             E +F ++ + + E +L+   L  +P N Q V    ++      VP+P LD+++  + + R
Sbjct:   126 ELIFAKQYMANTETYLKNVALKHMPPNLQVV---DLLRS----VPKPDLDSYVFLRVKER 178

Query:   182 FVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
               ++ +    D +R   +++E      + YK I
Sbjct:   179 QENILVEPETDEQRDYVIDLEEGSQHLIRYKTI 211

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A2VE40 GINS4 "DNA replication complex GINS protein SLD5" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 68/235 (28%), Positives = 124/235 (52%)

Query:     1 MAEDTGD-GSTAEMDDYETLMSTTDAEL---LKTAWRNEKAAPEILQFQAPLVKRAKEQI 56
             MAE+    G  ++ D  E ++  T AEL   L+ AW NEK APE+L+ ++ +V+   EQ+
Sbjct:     1 MAEEADLLGQDSDGDSEEVIL--TPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQL 58

Query:    57 QLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWS 116
             + MEE ++  ++     L VS++QM+++R  F+L SYLR RL K+EK+  +  + E    
Sbjct:    59 EHMEENLKRAKKGD---LKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRR 115

Query:   117 R-----LSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLD 171
                   LS  E +F +  + + E +L++T L  +P N Q V    ++      VP+P LD
Sbjct:   116 EEEPPILSPEELVFAKEFLANTETYLKDTALKHMPPNLQKV---DLLRT----VPKPDLD 168

Query:   172 TFIACKARNRFVSLRLA---DSERP--LEMERHDVSFVLYKVIEDKIGAD-IDLV 220
              ++  + + R  ++ +    D +R   +++E      + Y+ +   + +  I L+
Sbjct:   169 AYVFLRVKERQENILVEPENDEQRDYVIDLEEGSQHLMRYRTVAPLVASGAIQLI 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q9BRT9 GINS4 "DNA replication complex GINS protein SLD5" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 61/213 (28%), Positives = 111/213 (52%)

Query:     8 GSTAEMDDYETLMSTTDA-ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY 66
             G  ++    E +++  +  E L+ AW NEK APE+L+ +  +V+   EQ++ MEE +   
Sbjct:     9 GQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRA 68

Query:    67 EESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSDP 121
             +    + L VS++QM+++R  ++L SYLR RL K+EK+  ++ + E        S LS  
Sbjct:    69 KR---EDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125

Query:   122 EKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNR 181
             E  F +  + + E +L+   L  +P N Q V       +    VP+P LD+++  + R R
Sbjct:   126 ELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKPDLDSYVFLRVRER 178

Query:   182 FVSLRL---ADSERP--LEMERHDVSFVLYKVI 209
               ++ +    D +R   +++E+     + YK I
Sbjct:   179 QENILVEPDTDEQRDYVIDLEKGSQHLIRYKTI 211

GO:0005737 "cytoplasm" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

POMBASE|SPBP4H10.21c sld5 "GINS complex subunit Sld5" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 58/191 (30%), Positives = 99/191 (51%)

Query:    24 DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE-EYEESGMDPLTVSLYQMD 82
             D E L T W NE+ AP++L F   +V R  ++I+   ET++     S        L Q +
Sbjct:    19 DYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQTE 78

Query:    83 LDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVL 142
             L+R  F+LRSY+R R+ K++KY  YI  + +L   LS PE+ ++ R    + +H  ++ L
Sbjct:    79 LERVKFVLRSYMRTRINKIDKYAQYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYMDSFL 138

Query:   143 SKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFV--SLRLADSERPLEMERHD 200
              ++P     +     +     MV  P +DT + C   N  V  + R++++E  + +++ D
Sbjct:   139 REVPAKMNKL--DDKVGNLS-MVASPDMDTAVFCVV-NESVEENFRVSENEY-ITLDKGD 193

Query:   201 VSFVLYKVIED 211
             V  + Y VI D
Sbjct:   194 VLILRYSVISD 204

GO:0000811 "GINS complex" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006270 "DNA replication initiation" evidence=IC

GO:0031261 "DNA replication preinitiation complex" evidence=IC

GO:0034613 "cellular protein localization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P7C8	SLD5_SCHPO	No assigned EC number	0.3030	0.8090	0.8317	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_8000672	annotation not avaliable (220 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_301430.1	annotation not avaliable (210 aa)				•	•	•	•		0.648
	fgenesh1_pm.C_scaffold_2001974	annotation not avaliable (202 aa)				•	•	•	•		0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd11711	119	cd11711, GINS_A_Sld5, Alpha-helical domain of GINS	8e-43
COG5086	218	COG5086, COG5086, Uncharacterized conserved protei	2e-17

>gnl|CDD|212549 cd11711, GINS_A_Sld5, Alpha-helical domain of GINS complex protein Sld5

 Score =  140 bits (354), Expect = 8e-43
 Identities = 63/119 (52%), Positives = 81/119 (68%)

Query: 24  DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDL 83
           D ELLK AW NEK APE+L +Q  LV+R  EQI+  EE +EE + S  D L +SL++M+L
Sbjct: 1   DLELLKRAWVNEKFAPELLPYQEELVERVLEQIEQQEENLEELKASEKDDLRLSLHEMEL 60

Query: 84  DRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVL 142
           +R  FLLRSYLR RLQK+EKY  +I   E L SRLS  E  F +R  + +E HL+ +VL
Sbjct: 61  ERIRFLLRSYLRTRLQKIEKYALHILSEEELPSRLSPEELEFAKRYAELLENHLKSSVL 119

Sld5 is a component of GINS tetrameric protein complex, and within the complex Sld5 interacts with Psf1 via its N-terminal A-domain, and with Psf2 through a combination of the A and B domains. Sld5 in Drosophila is required for normal cell cycle progression and the maintenance of genomic integrity. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function unknown]

 Score = 77.3 bits (190), Expect = 2e-17
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 20  MSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVE-EYEESGMDPLTVSL 78
           MS  D   L  AW+NE++ P +L +   L+ R  ++I    E V+    +S        L
Sbjct: 19  MSFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESIL 78

Query: 79  YQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE 138
            + +L+R  F++RSY+R RL+K++K ++Y   +E+    LS  E  + ++        L+
Sbjct: 79  METELERVKFVVRSYIRTRLKKIDKNLYYDLSDENSLILLSGGELAYYEKHSLIYIDLLK 138

Query: 139 ETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEMER 198
           ++ L   P  +  V           M  EP  + F+                +  LE+ +
Sbjct: 139 DSDLYVTPQKFHKVHDF---VGFYCMTDEPDWNKFVFGAVNEDLQENDTVGEKELLELFK 195

Query: 199 HDVSFVLYKVIED 211
            D     Y VI D
Sbjct: 196 GDFFVARYDVIMD 208

Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG3176	223	consensus Predicted alpha-helical protein, potenti	100.0
COG5086	218	Uncharacterized conserved protein [Function unknow	100.0
KOG3303	192	consensus Predicted alpha-helical protein, potenti	99.97
COG5230	194	Uncharacterized conserved protein [Function unknow	99.9
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	97.98
COG1711	223	DNA replication initiation complex subunit, GINS f	96.72

>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]

Probab=100.00  E-value=7.5e-53  Score=348.02  Aligned_cols=200  Identities=40%  Similarity=0.598  Sum_probs=179.4

Q ss_pred             chhccCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 027653           15 DYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYL   94 (220)
Q Consensus        15 ~~~~~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYl   94 (220)
                      +++.++++++++.|+++|+|||||||||||+.++|+++++||+.|++++..-.++  .++..++|+||++|+||+++||+
T Consensus        18 ~~~~~t~~~~le~L~~aW~NEk~APeLLp~~~elve~~ldqIe~~eE~i~~~a~~--~dlr~~~~qmELERvkfvlrSYl   95 (223)
T KOG3176|consen   18 DYETLTPEEDLEDLETAWQNEKCAPELLPYALELVERLLDQIEHMEETIERKASN--KDLRVSLHQMELERVKFVLRSYL   95 (223)
T ss_pred             cceecCcHHHHHHHHHHHhhhccChhhcCChHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999999999633222  35999999999999999999999


Q ss_pred             HHHHHHHHHhHHHhhcccccc----cCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCC
Q 027653           95 RVRLQKLEKYMFYIWKNESLW----SRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQL  170 (220)
Q Consensus        95 R~RL~KIe~~~~~~~~~~e~~----~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~  170 (220)
                      ||||+||++|+.|+++.++.+    ++||+.|++|+++|+.++++||..++|+++|+++|..   ++..+...||++|++
T Consensus        96 RcRL~KIekf~~~~ln~ee~re~~~~~LS~~E~kfa~~~a~~~~k~~~~~~l~~mp~~~~~~---~dkv~~~~~v~~p~~  172 (223)
T KOG3176|consen   96 RCRLQKIEKFLQHILNQEELREGALSLLSEEELKFAEEYADILKKHFVDVVLQKMPENLQEN---DDKVGFVCMVDKPDL  172 (223)
T ss_pred             HHHHHHHHhhhHHhhcchhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH---HhhhceeEEEecCCC
Confidence            999999999999999988765    7899999999999999999999999999999999876   333345579999999


Q ss_pred             CceEEEEEcccCCc-eecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653          171 DTFIACKARNRFVS-LRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV  220 (220)
Q Consensus       171 d~~Vfvrvl~d~g~-v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI  220 (220)
                      |++|||+|+.+..+ |..++++ .++|.||++|++||..|.+||+. .|.||
T Consensus       173 ~s~Vf~~vn~~~~~~~~~~D~e-~~el~~gs~~viry~~v~dll~~~~V~Li  223 (223)
T KOG3176|consen  173 DSRVFIKVNESVEETVAVPDDE-LLELTKGSQHVIRYEVVSDLLRDGEVQLI  223 (223)
T ss_pred             ceeEEEEeccccccceeecCcc-cccccccceeeeeHHHHHHHHhcCCeeeC
Confidence            99999999987655 4555554 69999999999999999999999 99986

>COG5086 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-40  Score=265.55  Aligned_cols=196  Identities=24%  Similarity=0.354  Sum_probs=168.8

Q ss_pred             ChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653           21 STTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE-YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQ   99 (220)
Q Consensus        21 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~-~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~   99 (220)
                      +..+++.|..+|+|||+||+||||...+|++++++|..|.+.++- +..+...+-.-.++++|+||+||++++|+||||.
T Consensus        20 ~~~d~~DL~~~w~NEr~tp~LLPya~~li~r~LdrIs~q~e~v~ia~g~S~a~~~~S~lMetElERvKFvvrsYirtRl~   99 (218)
T COG5086          20 SFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESILMETELERVKFVVRSYIRTRLK   99 (218)
T ss_pred             CcCCHHHHHHHHhccccCccccCcHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999998872 2222122233445799999999999999999999


Q ss_pred             HHHHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCCCceEEEEEc
Q 027653          100 KLEKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKAR  179 (220)
Q Consensus       100 KIe~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~d~~Vfvrvl  179 (220)
                      ||.+|+.|..++|...-.||..|++|..+++....+|++.++|..+|+.++++   .+..+...|+.+|++|+||||-|+
T Consensus       100 Kidk~~~y~~s~~N~LilLS~~E~~y~~~Hs~I~~~l~~ds~l~~~p~k~~kv---~d~vG~~~m~dePD~nk~Vf~~Vn  176 (218)
T COG5086         100 KIDKNLYYDLSDENSLILLSGGELAYYEKHSLIYIDLLKDSDLYVTPQKFHKV---HDFVGFYCMTDEPDWNKFVFGAVN  176 (218)
T ss_pred             HhhhhHHHhhcCCceeeEecchhHHHHHHhhHHHHHHHHhhHHHHhHHHHHHH---HhhccceeeecCCCccceeEEEEc
Confidence            99999999999877656799999999999999999999999999999999998   344445589999999999999999


Q ss_pred             ccCCc-eecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653          180 NRFVS-LRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV  220 (220)
Q Consensus       180 ~d~g~-v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI  220 (220)
                      .|..+ ..++.. +.++|.||++|++||+.|.++++. .|.||
T Consensus       177 EdlqEN~~V~ek-E~~el~kGd~~v~ry~vI~D~Lr~~~V~Li  218 (218)
T COG5086         177 EDLQENDTVGEK-ELLELFKGDFFVARYDVIMDFLRRNEVILI  218 (218)
T ss_pred             chhhhccccchh-heeeeecCcEEEEEHHHHHHHHhcCceeeC
Confidence            87554 223333 369999999999999999999999 99886

>KOG3303 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]

Probab=99.97  E-value=2.3e-30  Score=209.54  Aligned_cols=177  Identities=17%  Similarity=0.284  Sum_probs=142.8

Q ss_pred             CChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHH----HhcCCCc----hhHHHHHHHHHHHHHHHH
Q 027653           20 MSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEY----EESGMDP----LTVSLYQMDLDRAHFLLR   91 (220)
Q Consensus        20 ~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~----~~~~~~~----~~~~l~~~eleRik~ll~   91 (220)
                      .++...+.+..+=.++..  .|+||++++|+.+.++|.+...+.+.+    ...++++    ..+.++|..++|+|+|+.
T Consensus         3 ~g~kg~~Li~d~kr~~~~--~Lppyn~d~ir~i~~E~~~l~~~~~~i~~~~~~g~~~d~~~~~~~~m~h~~~~RNkRClm   80 (192)
T KOG3303|consen    3 FGEKGLQLILDLKRTPLG--QLPPYNEDLIRQILEEIDALDARNESIKQKAQSGGSDDNLLPVNYLMMHLSLERNKRCLM   80 (192)
T ss_pred             hhHHHHHHHHHHhhCccc--cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHhHHHHH
Confidence            344555555555543333  489999999999999999876543333    2333333    457789999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhhcc--cccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653           92 SYLRVRLQKLEKYMFYIWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ  169 (220)
Q Consensus        92 sYlR~RL~KIe~~~~~~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~  169 (220)
                      ||++.|+..|..++|-++..  ..++..||.+|.+|+++|+.+++.|+.+..++                ...+|+  ||
T Consensus        81 AY~~~R~~~lr~~~W~~g~~lps~i~~sls~~E~eyf~~Ys~~La~y~~~~gid----------------l~~~~v--PP  142 (192)
T KOG3303|consen   81 AYVYLRLARLRDLAWSYGLDLPSSIRFSLSHEEEEYFKNYSNLLAEYMGPLGID----------------LTGDMV--PP  142 (192)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHhhhHHHHHHHHHHHHHHHHHhcCccch----------------hccCcC--CC
Confidence            99999999999999999954  34566799999999999999999998864211                134555  99


Q ss_pred             CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccc
Q 027653          170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGA-DID  218 (220)
Q Consensus       170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~  218 (220)
                      +|.||.|||++|+|+|++++|  +|+|.|+++|++|..+|++||.| -|.
T Consensus       143 k~lfI~VR~LkD~Ge~ete~g--~inL~KdS~hfl~r~d~E~LI~qG~v~  190 (192)
T KOG3303|consen  143 KDLFIQVRVLKDYGEFETEDG--TINLKKDSQHFLKRTDCERLIAQGFVL  190 (192)
T ss_pred             ccceEEEEEecccCceeecCC--eEEeeccchhhccHhHHHHHHHccchh
Confidence            999999999999999999987  79999999999999999999999 564

>COG5230 Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=6.2e-23  Score=163.20  Aligned_cols=163  Identities=13%  Similarity=0.180  Sum_probs=126.4

Q ss_pred             cCCCcCCCChHHHHHHHHHHHHHHH----HHHHHHhc--CCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027653           37 AAPEILQFQAPLVKRAKEQIQLMEE----TVEEYEES--GMD---PLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFY  107 (220)
Q Consensus        37 ~aPeLLpy~~~lV~~v~~~I~~q~e----~l~~~~~~--~~~---~~~~~l~~~eleRik~ll~sYlR~RL~KIe~~~~~  107 (220)
                      .-| |+||+.+.|+.+..+++....    .+++.+..  +.|   +....+.....+|||+||+||.+.|.+.+..++|-
T Consensus        19 Ld~-lp~Y~~d~i~~i~~E~~~ldr~~~eilqeasq~g~~~d~~~~~~y~~m~~~~erNkRcL~aY~~lR~~~L~~~~ws   97 (194)
T COG5230          19 LDP-LPPYRRDEIKAIEGENEHLDRRMEEILQEASQAGSGIDEELSVNYVMMKYFKERNKRCLRAYKFLRSAALFDSFWS   97 (194)
T ss_pred             ccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            456 999999999999999988742    23322211  112   23455566677799999999999999999999997


Q ss_pred             hhcc--cccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCCCCceEEEEEcccCCce
Q 027653          108 IWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSL  185 (220)
Q Consensus       108 ~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~~d~~Vfvrvl~d~g~v  185 (220)
                      -+..  .-....||..|.+|+++|+.++..|...         |..+       |- .....||.+.||-|||++|||.|
T Consensus        98 ~gk~m~s~~dt~LSh~E~eyl~~Ys~ll~~ykg~---------~~~i-------Dl-tgslvPP~~~FidVrvLkD~G~i  160 (194)
T COG5230          98 KGKRMKSVGDTMLSHEEEEYLEKYSNLLREYKGP---------FKHI-------DL-TGSLVPPVQFFIDVRVLKDCGVI  160 (194)
T ss_pred             CCcchhhhhccccchHHHHHHHHHHHHHHHHhCC---------ceee-------cc-ccccCCchheeEEeEeecccchh
Confidence            7553  1122369999999999999999999532         2223       21 22355999999999999999999


Q ss_pred             ecCCCCcceeeecCCEEEEEhhhHHHHHhh-cccc
Q 027653          186 RLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDL  219 (220)
Q Consensus       186 ~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~L  219 (220)
                      +++.|  +++|.|+++|++|-++|++||.| -+.-
T Consensus       161 ~tEyg--~inL~Kdsq~fvr~~dverLI~qGfl~k  193 (194)
T COG5230         161 MTEYG--LINLKKDSQYFVRKNDVERLIDQGFLRK  193 (194)
T ss_pred             ccccc--eEEeeccchhhhhHhHHHHHHHhhhhhc
Confidence            99886  79999999999999999999998 6543

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=97.98  E-value=1.4e-05  Score=59.30  Aligned_cols=40  Identities=33%  Similarity=0.562  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHh----hcccccccCCCHHHH
Q 027653           84 DRAHFLLRSYLRVRLQKLEKYMFYI----WKNESLWSRLSDPEK  123 (220)
Q Consensus        84 eRik~ll~sYlR~RL~KIe~~~~~~----~~~~e~~~~LS~~E~  123 (220)
                      +|+|+||.+|+++|+.||.+++|++    ....+..++||+.|+
T Consensus        65 ~~ik~~l~~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   65 ERIKRLLRDYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            9999999999999999999999999    233556789999985

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]

Probab=96.72  E-value=0.045  Score=46.50  Aligned_cols=112  Identities=20%  Similarity=0.229  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653           24 DAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEK  103 (220)
Q Consensus        24 ~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KIe~  103 (220)
                      +++.|.++.-.|++.-.|---+++.=..+-.-|+.++.........  .++...+....+++++...++-..-|+.||-+
T Consensus         2 ~i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~--~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~   79 (223)
T COG1711           2 DIEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEA--RDIEKYLLTDRIETAKSDARSIFQRRYGKIVS   79 (223)
T ss_pred             CHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999998999999999999999999998877655432  45555555558999999999999999999999


Q ss_pred             hHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHH
Q 027653          104 YMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE  138 (220)
Q Consensus       104 ~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~  138 (220)
                      -||+-....- .++|+++|++|+....+.+....-
T Consensus        80 ~A~~~~~~~~-~~~Lt~eEk~ly~~l~~~I~~e~~  113 (223)
T COG1711          80 RAIYDVPGET-ISNLTPEEKELYEDLVNFIEDERI  113 (223)
T ss_pred             HHHHhccccc-hhcCCHHHHHHHHHHHHHHhhchh
Confidence            9998776433 578999999999999888877644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
2e9x_D	223	The Crystal Structure Of Human Gins Core Complex Le		9e-17
2eho_A	203	Crystal Structure Of Human Gins Complex Length = 20		1e-14

>pdb|2E9X|D Chain D, The Crystal Structure Of Human Gins Core Complex Length = 223

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 25/184 (13%)
Query: 6   GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
            DG + E+     L      E L+ AW NEK APE+L+ +  +V+   EQ++ MEE +  
Sbjct: 12  SDGGSEEV----VLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRR 67
Query: 66  YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
              +  + L VS++QM+++R  ++L SYLR RL K+EK+  ++ + E        S LS 
Sbjct: 68  ---AKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSP 124
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
            E  F +  + + E +L+   L  +P N Q V          D+   VP+P LD+++  +
Sbjct: 125 EELAFAREFMANTESYLKNVALKHMPPNLQKV----------DLFRAVPKPDLDSYVFLR 174
Query: 178 ARNR 181
            R R
Sbjct: 175 VRER 178

>pdb|2EHO|A Chain A, Crystal Structure Of Human Gins Complex Length = 203

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 25/184 (13%)
Query: 6   GDGSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEE 65
            DG + E+     L      E L+ AW NEK APE+L+ +  +V+   EQ++  EE +  
Sbjct: 2   SDGGSEEV----VLTPAELIERLEQAWXNEKFAPELLESKPEIVECVXEQLEHXEENLRR 57
Query: 66  YEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW-----SRLSD 120
              +  + L VS++Q + +R  ++L SYLR RL K+EK+  ++ + E        S LS 
Sbjct: 58  ---AKREDLKVSIHQXEXERIRYVLSSYLRCRLXKIEKFFPHVLEKEKTRPEGEPSSLSP 114
Query: 121 PEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDM---VPEPQLDTFIACK 177
            E  F +    + E +L+   L   P N Q V          D+   VP+P LD+++  +
Sbjct: 115 EELAFAREFXANTESYLKNVALKHXPPNLQKV----------DLFRAVPKPDLDSYVFLR 164
Query: 178 ARNR 181
            R R
Sbjct: 165 VRER 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2e9x_D	223	GINS complex subunit 4; eukaryotic DNA replication	2e-42
2q9q_C	196	DNA replication complex GINS protein PSF1; elongat	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A* Length = 223

 Score =  141 bits (357), Expect = 2e-42
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 23/233 (9%)

Query: 1   MAEDTGD--GSTAEMDDYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQL 58
           M E+       +    +   L      E L+ AW NEK APE+L+ +  +V+   EQ++ 
Sbjct: 1   MTEEVDFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEH 60

Query: 59  MEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWKNESLW--- 115
           MEE +   +    + L VS++QM+++R  ++L SYLR RL K+EK+  ++ + E      
Sbjct: 61  MEENLRRAKR---EDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEG 117

Query: 116 --SRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTF 173
             S LS  E  F +  + + E +L+   L  +P N Q V       +    VP+P LD++
Sbjct: 118 EPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKPDLDSY 170

Query: 174 IACKARNRFVSLRLAD-----SERPLEMERHDVSFVLYKVIEDKIGA-DIDLV 220
           +  + R R  ++ +        +  +++E+     + YK I   + +  + L+
Sbjct: 171 VFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223

>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens} Length = 196

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 25  AELLKTAWRNEKAAPEILQFQAPLVKRAKEQI----QLMEETVEEYEESGMDPLTVSL-- 78
            EL++   R  +   ++  F    +++  E++    +  +  V E +  G   L  ++  
Sbjct: 7   MELIRELHRAPE--GQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKF 64

Query: 79  YQMDLDRAHFLLRSYLRVRLQKLEKYMFYIWK--NESLWSRLSDPEKMFVQRCIDDMEKH 136
               L R      +YL  RL ++    +        +L   ++  E  +       +  +
Sbjct: 65  RHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHMAAEEMEWFNNYKRSLATY 124

Query: 137 LEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQLDTFIACKARNRFVSLRLADSERPLEM 196
           +      +  D  Q +              +P    +I  +    +    + D    + +
Sbjct: 125 MRSLGGDEGLDITQDM--------------KPPKSLYIEVRCLKDYGEFEVDDGT-SVLL 169

Query: 197 ERHDVSFVLYKVIEDKI 213
           +++   F+     E  I
Sbjct: 170 KKNSQHFLPRWKCEQLI 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 29/219 (13%), Positives = 69/219 (31%), Gaps = 49/219 (22%)

Query: 26  ELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDR 85
           ++ K+    E+    I+       K A      +  T+   +E  +      + +++   
Sbjct: 40  DMPKSILSKEEI-DHIIM-----SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK- 92

Query: 86  AHFLLRSYLRVRLQKLEKYMFYIWKNESLWSRLSDPEKMFVQR--CIDDMEKHLEE---- 139
             FL+      + Q       YI + + L++      K  V R      + + L E    
Sbjct: 93  --FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 140 -------------TVL-----------SKLPDN--YQSVRRQSVISEEDDMVPEPQLDTF 173
                        T +            K+     + +++  +  S E  +    +L   
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQ 208

Query: 174 IACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDK 212
           I     +R      +D    +++  H +   L ++++ K
Sbjct: 209 IDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSK 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2e9x_D	223	GINS complex subunit 4; eukaryotic DNA replication	100.0
2q9q_C	196	DNA replication complex GINS protein PSF1; elongat	100.0
2e9x_A	149	DNA replication complex GINS protein PSF1; eukaryo	99.97
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	98.65
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	97.47

>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*

Probab=100.00  E-value=2.5e-58  Score=391.02  Aligned_cols=196  Identities=30%  Similarity=0.498  Sum_probs=174.8

Q ss_pred             chhccCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 027653           15 DYETLMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYL   94 (220)
Q Consensus        15 ~~~~~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYl   94 (220)
                      +.+.+++.+++++|+++|+||++||+||||++++|++++++|+.|+++++.+..   +++.+.+||+|++|+||||+|||
T Consensus        17 ~~~~~t~~~~~~~L~~~w~nE~~aPeLlpy~~~lv~~v~~~i~~~~e~i~~~~~---~~~~l~i~~~eleR~k~~l~sYl   93 (223)
T 2e9x_D           17 EEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKR---EDLKVSIHQMEMERIRYVLSSYL   93 (223)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccChHHHHHHHHHHHHcccCCCcccCcchHHHHHHHHHHHHHHHHHHHhhc---ccHhHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999998887754   47899999999999999999999


Q ss_pred             HHHHHHHHHhHHHhhccccc----c-cCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653           95 RVRLQKLEKYMFYIWKNESL----W-SRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ  169 (220)
Q Consensus        95 R~RL~KIe~~~~~~~~~~e~----~-~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~  169 (220)
                      |+||.||++|+||++.+++.    . ++||++|++|+++|+.++++||.+++|++||++++.+       +...|+++||
T Consensus        94 R~RL~KIe~~~~~~~~~~~~r~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~P~~~~~l-------d~~~m~~~P~  166 (223)
T 2e9x_D           94 RCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKPD  166 (223)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCC-------CHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHhCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHhhhhhhCCHhhhcc-------CccccccCCC
Confidence            99999999999999986554    2 8899999999999999999999999999999999987       4557899999


Q ss_pred             CCceEEEEEcccCCceecCCCC-----cceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653          170 LDTFIACKARNRFVSLRLADSE-----RPLEMERHDVSFVLYKVIEDKIGA-DIDLV  220 (220)
Q Consensus       170 ~d~~Vfvrvl~d~g~v~l~~g~-----~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI  220 (220)
                      +|.||||||++|+|.|.+++++     ++|+|.||++|++||++|++||.+ .|+||
T Consensus       167 ~d~~VfvRvl~d~g~v~~~~~~g~~~~~~i~L~kgs~~~vry~~ve~LI~~G~velI  223 (223)
T 2e9x_D          167 LDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223 (223)
T ss_dssp             TTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred             CCCeEEEEEeeccCeEEeCCCCCCccceeEEEccCCEEEEEHHHHHHHHHcCCEEeC
Confidence            9999999999999999998742     269999999999999999999999 99987

>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}

Probab=100.00  E-value=9.6e-46  Score=308.19  Aligned_cols=184  Identities=12%  Similarity=0.150  Sum_probs=112.0

Q ss_pred             cCChHHHHHHHHHHHhhhcCC-CcCCCChHHHHHHHHHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHHHH
Q 027653           19 LMSTTDAELLKTAWRNEKAAP-EILQFQAPLVKRAKEQIQLMEETVEEYEES------GMDPLTVSLYQMDLDRAHFLLR   91 (220)
Q Consensus        19 ~~~~~~~~~L~~~w~NEk~aP-eLLpy~~~lV~~v~~~I~~q~e~l~~~~~~------~~~~~~~~l~~~eleRik~ll~   91 (220)
                      |.++...+.++.+|+   ++| +||||++++|++++++|+.|++++....+.      +.+.+.+.++|++++||||||+
T Consensus         1 m~g~~a~~Ll~el~r---~~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~R~Kr~l~   77 (196)
T 2q9q_C            1 MFCEKAMELIRELHR---APEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTV   77 (196)
T ss_dssp             CTTHHHHHHHHHHHT---SCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHh---cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHHHHHHHHHHHHHHHHHH
Confidence            467889999999996   455 999999999999999999999887655422      1234779999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhhc--ccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCCC
Q 027653           92 SYLRVRLQKLEKYMFYIWK--NESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEPQ  169 (220)
Q Consensus        92 sYlR~RL~KIe~~~~~~~~--~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P~  169 (220)
                      ||||+|+.||++|+|+++.  +++.+++|||+|++|+++|+.++.+|+.+.+.+     + .+       +. .+.++||
T Consensus        78 aYlr~Rl~KI~~~~w~~~~~l~~~~~~~LS~~E~~y~~~y~~ll~~y~~~~~~~-----~-~l-------dl-t~~~~Pp  143 (196)
T 2q9q_C           78 AYLYDRLLRIRALRWEYGSILPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGD-----E-GL-------DI-TQDMKPP  143 (196)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSS-----S-CC-------CT-TSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhcccc-----c-Cc-------Cc-cCCCCCC
Confidence            9999999999999999985  366789999999999999999999998875311     1 12       11 1235899


Q ss_pred             CCceEEEEEcccCCceecCCCCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653          170 LDTFIACKARNRFVSLRLADSERPLEMERHDVSFVLYKVIEDKIGA-DIDLV  220 (220)
Q Consensus       170 ~d~~Vfvrvl~d~g~v~l~~g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI  220 (220)
                      +|.||||||++|+|+|.+++|+ +|+|.||++|++||++|++||.+ .|+||
T Consensus       144 ~d~~V~VRvl~d~gev~~~~g~-~v~L~kgs~~~lr~~~ve~LI~~G~leli  194 (196)
T 2q9q_C          144 KSLYIEVRCLKDYGEFEVDDGT-SVLLKKNSQHFLPRWKCEQLIRQGVLEHI  194 (196)
T ss_dssp             CC--------------------------------------------------
T ss_pred             CCCeEEEEEecccCeEEecCCC-EEEEeeCCEEEEEHHHHHHHHHCCceecc
Confidence            9999999999999999998875 69999999999999999999999 99886

>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*

Probab=99.97  E-value=1.1e-29  Score=202.74  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             cCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcC---C---CchhHHHHHHHHHHHHHHHHH
Q 027653           19 LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESG---M---DPLTVSLYQMDLDRAHFLLRS   92 (220)
Q Consensus        19 ~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~---~---~~~~~~l~~~eleRik~ll~s   92 (220)
                      |.++..++.++.+|.++  +|+||||++++|++|+++|+.+++++....+..   .   ..+.+.+||++++||||||+|
T Consensus         1 m~g~~a~~Ll~el~rs~--~~~Lppy~~dlVr~v~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~RnKrcLlA   78 (149)
T 2e9x_A            1 MFCEKAMELIRELHRAP--EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVA   78 (149)
T ss_dssp             CTTHHHHHHHHHHHHSC--TTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999988  899999999999999999999999887754321   1   236688999999999999999


Q ss_pred             HHHHHHHHHHHhHHHhhcc--cccccCCCHHHHHHHHHHHHHHHHHHHH
Q 027653           93 YLRVRLQKLEKYMFYIWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEE  139 (220)
Q Consensus        93 YlR~RL~KIe~~~~~~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~  139 (220)
                      |||+|++||++++|+++..  ++.+++|||+|.+|+++|+.++.+|+.+
T Consensus        79 Yl~~Rl~kI~~~~w~~g~~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~  127 (149)
T 2e9x_A           79 YLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRS  127 (149)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCChHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999864  5567899999999999999999999885

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=98.65  E-value=1.4e-06  Score=71.34  Aligned_cols=177  Identities=12%  Similarity=0.133  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653           25 AELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEE-SGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKLEK  103 (220)
Q Consensus        25 ~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~-~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KIe~  103 (220)
                      ++.|...|.+|+.++.|.+-..+.-+.+.+-|..+...+..... .  .++...++..++++.+..+.+-.+.|+.||=+
T Consensus         3 i~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~--~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~   80 (188)
T 3anw_A            3 IVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERG--EDVEERLYLAQLKIAESLMKEIIKLRLHKIVD   80 (188)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999998899988888776654 2  24567778889999999999999999999999


Q ss_pred             hHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhh-hcccccCCCCCCCCCCCceEEEEEcccC
Q 027653          104 YMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRR-QSVISEEDDMVPEPQLDTFIACKARNRF  182 (220)
Q Consensus       104 ~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~-~~~~~~~~~mi~~P~~d~~Vfvrvl~d~  182 (220)
                      .+.  .   +..++|+++|+.++......+..+-..     +|.+  .... ....++....-+.+..+.||   +++|.
T Consensus        81 ~a~--~---~~~~~Lt~EEk~l~~~l~~~i~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~---v~~d~  145 (188)
T 3anw_A           81 LAV--E---GKIAEMTAEEKRLFNVIRAFIEREELP-----EISE--EVQPQEESEAEAEYRSKEVPKEAYI---IQIDL  145 (188)
T ss_dssp             HHH--H---TEECCCCHHHHHHHHHHHHHHTTCCCC-----CC-----------------CCCCCCCEEEEE---ECSCB
T ss_pred             HHh--h---hhhhhCCHHHHHHHHHHHHHHHhcccc-----cccc--ccccccccccccccccccCcCcceE---EEeCC
Confidence            882  1   134789999999999887766543222     2210  0000 00000000000112223344   38999


Q ss_pred             CceecCCCCccee-eecCCEEEEEhhhHHHHHhh-cccc
Q 027653          183 VSLRLADSERPLE-MERHDVSFVLYKVIEDKIGA-DIDL  219 (220)
Q Consensus       183 g~v~l~~g~~~v~-L~kg~i~~l~y~~v~~Li~~-~v~L  219 (220)
                      +.|.-.+|- ... |.+||+-.+|......|+.. .++-
T Consensus       146 p~i~~~d~r-~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~  183 (188)
T 3anw_A          146 PAVLGPDMK-EYGPFMAGDMAIIPTVIGRALVEREAARR  183 (188)
T ss_dssp             CCEECTTSC-EECCBCTTCEEEEEHHHHHHHHTTTSEEE
T ss_pred             CceecCCcC-cccCCCcccEEeecHHHHHHHHhCCCeEE
Confidence            988854443 567 99999999999999999998 6653

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=97.47  E-value=0.0008  Score=54.08  Aligned_cols=115  Identities=18%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027653           22 TTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRLQKL  101 (220)
Q Consensus        22 ~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL~KI  101 (220)
                      ...++.|.+.-.-||.++.|-+=+.+.=.++..-|..+++.+....+...+.+...+  .++.+.+-.++.-.+.|+.||
T Consensus        55 ~~~I~eL~~il~eEr~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl--~elk~~~~~l~~L~~~Ri~KI  132 (171)
T 3anw_B           55 DKIIGEIDKVIAEERESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKL--TKLANLRKKLRDLKLIRFNKI  132 (171)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            466778888888999988988888888888888888888765433221111222223  779999999999999999999


Q ss_pred             HHhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHH
Q 027653          102 EKYMFYIWKNESLWSRLSDPEKMFVQRCIDDMEKHLE  138 (220)
Q Consensus       102 e~~~~~~~~~~e~~~~LS~~E~~f~~~y~~ll~~~~~  138 (220)
                      =+.+.+-.+..+..++|||+|+..+..-...+..++.
T Consensus       133 v~la~~~~~~~eil~rLTpEEk~iy~~l~~~i~~w~g  169 (171)
T 3anw_B          133 LKAVMLRPNSLELLSRLAPEERRIYLQMSKIRNEWLG  169 (171)
T ss_dssp             HHHHTC--CCHHHHTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCCcHHHHhcCCHHHHHHHHHHHHHHHHHcc
Confidence            9999655555566789999999999999888877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d2e9xd1	145	a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5	5e-41

>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: SLD5 N-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (340), Expect = 5e-41
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 19  LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSL 78
           L      E L+ AW NEK APE+L+ +  +V+   EQ++ MEE +   +      L VS+
Sbjct: 1   LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKRED---LKVSI 57

Query: 79  YQMDLDRAHFLLRSYLRVRLQKLEKYMFYI-----WKNESLWSRLSDPEKMFVQRCIDDM 133
           +QM+++R  ++L SYLR RL K+EK+  ++      + E   S LS  E  F +  + + 
Sbjct: 58  HQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANT 117

Query: 134 EKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEP 168
           E +L+   L  +P N Q V       +    VP+P
Sbjct: 118 ESYLKNVALKHMPPNLQKV-------DLFRAVPKP 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d2e9xd1	145	GINS complex subunit 4, SLD5 {Human (Homo sapiens)	100.0
d2e9xa1	144	DNA replication complex GINS protein PSF1 {Human (	99.87
d2e9xd2	58	GINS complex subunit 4, SLD5 {Human (Homo sapiens)	99.39

>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: SLD5 N-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-45  Score=288.35  Aligned_cols=140  Identities=36%  Similarity=0.532  Sum_probs=125.1

Q ss_pred             cCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027653           19 LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESGMDPLTVSLYQMDLDRAHFLLRSYLRVRL   98 (220)
Q Consensus        19 ~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~~~~~~~~l~~~eleRik~ll~sYlR~RL   98 (220)
                      +|+.+++++|+++|+|||+|||||||++++|++++++|+.|+++++....+   ++.+++++|||+|+||++++||||||
T Consensus         1 ~t~~~~l~~L~~aW~NEr~aPELLp~~~~lv~~v~~qi~~~ee~~~~~~~~---~l~~~i~~~EleRikfllrsYLR~RL   77 (145)
T d2e9xd1           1 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKRE---DLKVSIHQMEMERIRYVLSSYLRCRL   77 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC------C---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhccChhccCCcHHHHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999999999998876543   79999999999999999999999999


Q ss_pred             HHHHHhHHHhhcccc-----cccCCCHHHHHHHHHHHHHHHHHHHHhhhccCChhhhhhhhhcccccCCCCCCCC
Q 027653           99 QKLEKYMFYIWKNES-----LWSRLSDPEKMFVQRCIDDMEKHLEETVLSKLPDNYQSVRRQSVISEEDDMVPEP  168 (220)
Q Consensus        99 ~KIe~~~~~~~~~~e-----~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~p~~~~~l~~~~~~~~~~~mi~~P  168 (220)
                      .||++|+.|++..+.     ..++||++|..||++|..++++||.++||++||+++|++       ++.+|||+|
T Consensus        78 ~KIek~~~hil~~~~~~~~~~~~~LS~~E~~fa~~~~~~~~~h~~~s~L~~~P~~lq~l-------d~~~~v~~P  145 (145)
T d2e9xd1          78 MKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKV-------DLFRAVPKP  145 (145)
T ss_dssp             HHHHHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCC-------CHHHHSCCC
T ss_pred             HHHHHhHHHHHhhhccCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHcc-------cccccCCCC
Confidence            999999999986532     347899999999999999999999999999999999998       667899887

>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF1 N-terminal domain-like
domain: DNA replication complex GINS protein PSF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=151.62  Aligned_cols=119  Identities=13%  Similarity=0.169  Sum_probs=97.2

Q ss_pred             cCChHHHHHHHHHHHhhhcCCCcCCCChHHHHHHHHHHHHHHHHHHHHHhcC----CCc--hhHHHHHHHHHHHHHHHHH
Q 027653           19 LMSTTDAELLKTAWRNEKAAPEILQFQAPLVKRAKEQIQLMEETVEEYEESG----MDP--LTVSLYQMDLDRAHFLLRS   92 (220)
Q Consensus        19 ~~~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~q~e~l~~~~~~~----~~~--~~~~l~~~eleRik~ll~s   92 (220)
                      |+++...+.++.+=..+.  .-|+||++++|+.|+++|+.+.+.+....+..    ..+  ..+.++|..++|+|+||.+
T Consensus         1 Mygd~a~~Li~elkrs~~--~~LPpyn~dlvr~i~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~RNKRCLLA   78 (144)
T d2e9xa1           1 MFCEKAMELIRELHRAPE--GQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVA   78 (144)
T ss_dssp             CTTHHHHHHHHHHHHSCT--TCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhccC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            456677777777765333  23999999999999999999977655543222    112  4577899999999999999


Q ss_pred             HHHHHHHHHHHhHHHhhcc--cccccCCCHHHHHHHHHHHHHHHHHHHH
Q 027653           93 YLRVRLQKLEKYMFYIWKN--ESLWSRLSDPEKMFVQRCIDDMEKHLEE  139 (220)
Q Consensus        93 YlR~RL~KIe~~~~~~~~~--~e~~~~LS~~E~~f~~~y~~ll~~~~~~  139 (220)
                      |++.|+.||+.++|.++..  ++++++||+.|++|+++|+.++.+|+.+
T Consensus        79 Y~~~R~~ri~~lrW~~g~~Lp~~~~~~Ls~~E~eyf~~Ys~lL~~Y~~~  127 (144)
T d2e9xa1          79 YLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRS  127 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999875  5677899999999999999999999875

>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: SLD5 C-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-13  Score=88.50  Aligned_cols=52  Identities=17%  Similarity=0.438  Sum_probs=47.6

Q ss_pred             CCCceEEEEEcccCCceecCC-----CCcceeeecCCEEEEEhhhHHHHHhh-ccccC
Q 027653          169 QLDTFIACKARNRFVSLRLAD-----SERPLEMERHDVSFVLYKVIEDKIGA-DIDLV  220 (220)
Q Consensus       169 ~~d~~Vfvrvl~d~g~v~l~~-----g~~~v~L~kg~i~~l~y~~v~~Li~~-~v~LI  220 (220)
                      |+|.|||+||++....|.+++     +++.++|++|++|++||+.|.+||.+ .|+||
T Consensus         1 NldsyVFLrvn~~~~~ilv~~e~D~q~d~~iDle~GSQHimrY~~ia~LV~~gaVqLI   58 (58)
T d2e9xd2           1 DLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI   58 (58)
T ss_dssp             CTTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred             CCcceEEEEeccccCceEECCccCcccceeEecccCceeEEeehhHHHHHhcCceeeC
Confidence            689999999999999999876     24579999999999999999999999 99997