Citrus Sinensis ID: 027673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHSRGMGSKHDIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEccccc
Coil and Loop (DISEMBL)
MQQHLMQMQPMmaayypnnvttDHIQQYLDENKSLILKIVEsqnsgklseCAENQARLQRNLMYLAAIadaqpqppsvhaqfssggimqpgahymqhqqsqpmtpqSLMAARSSMVYSQQQFSVLQQQQALHgqlgmssggssglhmlqsegstaggsgslggggfpdfgrgssgeglhsrgmgskhdigssgsaegrggssgsqdggetlylkgaddgn
Flexible Loop (DISEMBL)
MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHSRGMGSKHDIGSSGSAegrggssgsqdggetlylkgaddgn
Low Complexity Region (SEG)
mqqhlmqmqpmmAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSqqqfsvlqqqqalhgqlgmssggssglhmlqsegstaggsgslggggfpdfgrgssgEGLHSRGMGSKHDIgssgsaegrggssgsqdggETLYLKGADDGN
Disordered region (IsUnstruct)
************AAYYPNNVTTDHIQQYLDENKSLILKIVE****************LQRNLMYLAAI********************************************************************************************************************************************************
Disordered Region (DISOPRED)
********************TTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIA*******************************************************************************************************************************************************
Disordered Region (DISEMBL)
********QPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADA***********SSGGIMQPGAH***************MAARSSMVYSQQQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRG*********************************DGGETLYLKGADDGN
Disordered Region (DISPRO)
*********PMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQP*******************************************YS*****V*QQ*********************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHSRGMGSKHDIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q8L8A5	210	GRF1-interacting factor 1	yes	no	0.881	0.923	0.593	5e-49
Q93VH6	223	GRF1-interacting factor 3	no	no	0.477	0.470	0.503	8e-24
Q9MAL9	195	GRF1-interacting factor 2	no	no	0.513	0.579	0.476	5e-21
O75177	396	Calcium-responsive transa	yes	no	0.331	0.184	0.425	1e-09
Q5RFQ1	418	Protein SSXT OS=Pongo abe	yes	no	0.331	0.174	0.425	1e-09
Q15532	418	Protein SSXT OS=Homo sapi	no	no	0.331	0.174	0.425	1e-09
Q6DDK1	403	Calcium-responsive transa	N/A	no	0.363	0.198	0.413	2e-09
Q08E31	402	Calcium-responsive transa	yes	no	0.331	0.181	0.425	4e-09
Q8BW22	402	Calcium-responsive transa	no	no	0.331	0.181	0.412	6e-09
Q91XJ0	401	Calcium-responsive transc	no	no	0.331	0.182	0.412	6e-09

>sp|Q8L8A5|GIF1_ARATH GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1

 Score =  194 bits (492), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/236 (59%), Positives = 154/236 (65%), Gaps = 42/236 (17%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMA YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSG----GIMQPGAHYM---QHQQSQPMTPQSLMAARS 113
           NLMYLAAIAD+QPQPPSVH+Q+ S        + G+HY+   Q  Q Q MT QSLMAARS
Sbjct: 61  NLMYLAAIADSQPQPPSVHSQYGSAGGGMIQGEGGSHYLQQQQATQQQQMTQQSLMAARS 120

Query: 114 SMVYSQQQ-----FSVLQQQQALHGQL----GMSSGGSSGLHMLQSEGSTAGGSGSLGGG 164
           SM+Y+QQQ     ++ LQ QQ  H QL        GGSSGLH+LQ E            G
Sbjct: 121 SMLYAQQQQQQQPYATLQHQQLHHSQLGMSSSSGGGGSSGLHILQGE-----------AG 169

Query: 165 GFPDFGRGSSGEGLHSRGMGSKHDIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
           GF DFGRG                        G G    S DGGETLYLK +DDGN
Sbjct: 170 GFHDFGRGKP---------------EMGSGGGGEGRGGSSGDGGETLYLKSSDDGN 210

Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. Appears to function synergistically with GRF1 as a transcriptional coactivator. Acts together with GRF5 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. Plays a role in adaxial/abaxial patterning and growth in leaf morphogenesis. GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 81/127 (63%), Gaps = 22/127 (17%)

Query: 7   QMQPMMAAYYP--NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMY 64
           QM PM+   +P  NN+TT+ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMY
Sbjct: 6   QMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMY 65

Query: 65  LAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQQFSV 124
           LAAIADAQPQPP+  A  +SG                 MTPQ++    SSM      F  
Sbjct: 66  LAAIADAQPQPPA--ATLTSGA----------------MTPQAMAPNPSSMQPPPSYF-- 105

Query: 125 LQQQQAL 131
           +QQ QA+
Sbjct: 106 MQQHQAV 112

Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (By similarity). GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAL9|GIF2_ARATH GRF1-interacting factor 2 OS=Arabidopsis thaliana GN=GIF2 PE=1 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 13/126 (10%)

Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           QQ   QM PM+ +  P NN+TT+ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQK 62

Query: 61  NLMYLAAIADAQ--------PQPPSVHAQFSSGGI-MQPGAHYMQHQQSQPMTPQSLMAA 111
           NLMYLAAIADAQ            +V AQ ++    MQP +++MQH Q+   +P  + A 
Sbjct: 63  NLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQA---SPAGIFAP 119

Query: 112 RSSMVY 117
           R  + +
Sbjct: 120 RGPLQF 125

Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (By similarity). GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner.

Arabidopsis thaliana (taxid: 3702)

>sp|O75177|CREST_HUMAN Calcium-responsive transactivator OS=Homo sapiens GN=SS18L1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          VT   IQ+ LDEN  LI  I+E Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct: 16 VTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+ +     G + Q G+
Sbjct: 76 PAPPTQNMNLGPGALTQSGS 95

Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP.

Homo sapiens (taxid: 9606)

>sp|Q5RFQ1|SSXT_PONAB Protein SSXT OS=Pongo abelii GN=SS18 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          +T   IQ+ LD+N  LI  I++SQN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct: 16 ITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+ +     GG+ Q G 
Sbjct: 76 PAPPTQNMPMGPGGMNQSGP 95

Appears to function synergistically with RBM14 as a transcriptional coactivator.

Pongo abelii (taxid: 9601)

>sp|Q15532|SSXT_HUMAN Protein SSXT OS=Homo sapiens GN=SS18 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          +T   IQ+ LD+N  LI  I++SQN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct: 16 ITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+ +     GG+ Q G 
Sbjct: 76 PAPPTQNMPMGPGGMNQSGP 95

Appears to function synergistically with RBM14 as a transcriptional coactivator. Isoform 1 and isoform 2 function in nuclear receptor coactivation. Isoform 1 and isoform 2 function in general transcriptional coactivation.

Homo sapiens (taxid: 9606)

>sp|Q6DDK1|CREST_XENLA Calcium-responsive transactivator OS=Xenopus laevis GN=ss18l1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 20  VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
           VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct: 16  VTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 73  PQPPSVHAQFSSGGIMQPGAHYMQHQQ 99
           P PP+ +     GG+ Q G     H Q
Sbjct: 76  PAPPTQNMNLGPGGMSQTGPSQTLHSQ 102

Transcriptional activator which may be required for calcium-dependent dendritic growth and branching in cortical neurons.

Xenopus laevis (taxid: 8355)

>sp|Q08E31|CREST_BOVIN Calcium-responsive transactivator OS=Bos taurus GN=SS18L1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct: 16 VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+       GG+ Q G+
Sbjct: 76 PAPPTQSMTLGPGGLSQSGS 95

Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP.

Bos taurus (taxid: 9913)

>sp|Q8BW22|CREST_MOUSE Calcium-responsive transactivator OS=Mus musculus GN=Ss18l1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct: 16 VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+ +     G + Q G+
Sbjct: 76 PAPPTQNMNLGPGALSQSGS 95

Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP.

Mus musculus (taxid: 10090)

>sp|Q91XJ0|CREST_RAT Calcium-responsive transcription coactivator OS=Rattus norvegicus GN=Ss18l1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
          VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct: 16 VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 73 PQPPSVHAQFSSGGIMQPGA 92
          P PP+ +     G + Q G+
Sbjct: 76 PAPPTQNMNLGPGALSQSGS 95

Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
225453002	223	PREDICTED: uncharacterized protein LOC10	0.995	0.982	0.776	3e-84
224116016	220	predicted protein [Populus trichocarpa]	0.986	0.986	0.771	3e-81
118485662	213	unknown [Populus trichocarpa]	0.954	0.985	0.763	4e-77
255561883	219	synovial sarcoma associated ss18 protein	0.986	0.990	0.783	2e-76
224123492	222	predicted protein [Populus trichocarpa]	0.986	0.977	0.751	1e-75
449442961	224	PREDICTED: GRF1-interacting factor 1-lik	0.995	0.977	0.728	6e-74
296087914	188	unnamed protein product [Vitis vinifera]	0.854	1.0	0.694	3e-72
255641340	204	unknown [Glycine max]	0.845	0.911	0.720	3e-65
356573124	210	PREDICTED: uncharacterized protein LOC10	0.940	0.985	0.699	5e-62
225437822	224	PREDICTED: uncharacterized protein LOC10	0.972	0.955	0.685	2e-59

>gi|225453002|ref|XP_002263259.1| PREDICTED: uncharacterized protein LOC100253609 [Vitis vinifera]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/224 (77%), Positives = 193/224 (86%), Gaps = 5/224 (2%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYYP+NVTTDHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQ 120
           NLMYLAAIAD+QPQPP++HAQF   GI+QPGAHYMQHQQ+Q MTPQSL+AARSSM+YSQQ
Sbjct: 61  NLMYLAAIADSQPQPPTMHAQFPPSGIVQPGAHYMQHQQAQQMTPQSLLAARSSMLYSQQ 120

Query: 121 QFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHS 180
            FS LQQQQA+H QLGM SGGS+GLHMLQSEGS  GG+G+LG GGFPDF RG+SGEGL +
Sbjct: 121 PFSALQQQQAIHSQLGMGSGGSAGLHMLQSEGSNPGGNGTLGTGGFPDFSRGTSGEGLQA 180

Query: 181 --RGM--GSKHDIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
             RGM  GSK D+G++    G        DGGETLYLK A+DGN
Sbjct: 181 AGRGMAGGSKQDMGNA-EGRGGNSGGQGGDGGETLYLKAAEDGN 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116016|ref|XP_002332027.1| predicted protein [Populus trichocarpa] gi|222875252|gb|EEF12383.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/223 (77%), Positives = 186/223 (83%), Gaps = 6/223 (2%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYYP+NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQ+
Sbjct: 1   MQQHLMQMQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQQ 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMV-YSQ 119
           NLMYLAAIAD QPQPP++HAQF S GIMQPGAHYMQHQQ+Q MTPQ+LMAARSSM+ Y+Q
Sbjct: 61  NLMYLAAIADCQPQPPTMHAQFPSSGIMQPGAHYMQHQQAQQMTPQALMAARSSMLQYAQ 120

Query: 120 QQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLH 179
           Q FS LQQQQALH QLGMSSGGS+GLHM+QSE +TAGGSG+LG G FPDFG  +S  G+ 
Sbjct: 121 QPFSALQQQQALHSQLGMSSGGSAGLHMMQSEANTAGGSGALGAGRFPDFGMDASSRGIA 180

Query: 180 SRGMGSKHDI--GSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
           S   GSK DI    S    G        DGGETLYLK ADDGN
Sbjct: 181 S---GSKQDIRSAGSSEGRGGSSGGQGGDGGETLYLKSADDGN 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485662|gb|ABK94681.1| unknown [Populus trichocarpa]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/216 (76%), Positives = 179/216 (82%), Gaps = 6/216 (2%)

Query: 8   MQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAA 67
           MQPMMAAYYP+NVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQ+NLMYLAA
Sbjct: 1   MQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQQNLMYLAA 60

Query: 68  IADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMV-YSQQQFSVLQ 126
           IAD QPQPP++HAQF S GIMQPGAHYMQHQQ+Q MTPQ+LMAARSSM+ Y+QQ FS LQ
Sbjct: 61  IADCQPQPPTMHAQFPSSGIMQPGAHYMQHQQAQQMTPQALMAARSSMLQYAQQPFSALQ 120

Query: 127 QQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHSRGMGSK 186
           QQQALH QLGMSSGGS+GLHM+QSE +TAGGSG+LG G FPDFG  +S  G+ S   GSK
Sbjct: 121 QQQALHSQLGMSSGGSAGLHMMQSEANTAGGSGALGAGRFPDFGMDASSRGIAS---GSK 177

Query: 187 HDI--GSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
            DI    S    G        DGGETLYLK ADDGN
Sbjct: 178 QDIRSAGSSEGRGGSSGGQGGDGGETLYLKSADDGN 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561883|ref|XP_002521950.1| synovial sarcoma associated ss18 protein, putative [Ricinus communis] gi|223538754|gb|EEF40354.1| synovial sarcoma associated ss18 protein, putative [Ricinus communis]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/222 (78%), Positives = 191/222 (86%), Gaps = 5/222 (2%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGK+SECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKISECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQ 120
           NLMYLAAIAD+QPQPP++H+QFSS GIMQPGAHYMQHQQ+Q MTPQS+MAARSSM+Y+QQ
Sbjct: 61  NLMYLAAIADSQPQPPNMHSQFSSSGIMQPGAHYMQHQQAQQMTPQSVMAARSSMLYTQQ 120

Query: 121 QFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHS 180
           Q++ LQQQQALH QLGMSSGGS GLHMLQSE STAGGSG LG GGFPDFGR +SG G+  
Sbjct: 121 QYAALQQQQALHSQLGMSSGGSPGLHMLQSEASTAGGSGGLGAGGFPDFGRDASGRGMAG 180

Query: 181 RGMGSKHDIGSS--GSAEGRGGSSGSQDGGETLYLKGADDGN 220
              GSK D+G++  G   G        DGGE LYLK AD+GN
Sbjct: 181 ---GSKQDMGNAGSGEGRGGNSGGQGSDGGENLYLKSADEGN 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123492|ref|XP_002319091.1| predicted protein [Populus trichocarpa] gi|222857467|gb|EEE95014.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 183/225 (81%), Gaps = 8/225 (3%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYYP+NVTTDHIQQYLDENKSLILKIVESQN GKLSECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNLGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMV-YSQ 119
           NLMYLAAIAD+QP PP++HAQF S  IMQPGAHYMQHQQ+Q MTPQ+LMAARSSM+ Y+Q
Sbjct: 61  NLMYLAAIADSQPPPPTMHAQFPSSSIMQPGAHYMQHQQAQQMTPQALMAARSSMLQYAQ 120

Query: 120 QQFSVL--QQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEG 177
           Q FS L  QQ QALH QLGMSSGGS+GLHMLQ+E   AGGSG+LG GGFPDFG  ++G G
Sbjct: 121 QPFSALQQQQVQALHSQLGMSSGGSAGLHMLQNEAIMAGGSGALGVGGFPDFGIDAAGRG 180

Query: 178 LHSRGMGSKHDI--GSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
           + S   GSK DI    S    G        DGGETLYLK ADDGN
Sbjct: 181 IAS---GSKQDIRSAGSSEGRGGSSGGHGGDGGETLYLKSADDGN 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442961|ref|XP_004139249.1| PREDICTED: GRF1-interacting factor 1-like [Cucumis sativus] gi|449530162|ref|XP_004172065.1| PREDICTED: GRF1-interacting factor 1-like isoform 1 [Cucumis sativus]

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 164/225 (72%), Positives = 184/225 (81%), Gaps = 6/225 (2%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQ 120
           NLMYLAAIAD+QPQP ++HAQ+SS G++QPG HY+QHQQ+Q MTPQSLMAARSSM+YSQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGMIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQ 120

Query: 121 QFSVLQQQQALHGQLGMSSGGSSGLHMLQSE--GSTAGGSGSLGGGGFPDFGRGSSGEGL 178
            FS L QQQALHGQLGMSSGG  G +MLQ++   +  G  G+LGGGGFPDFG G++ + L
Sbjct: 121 PFSTL-QQQALHGQLGMSSGGGIGFNMLQNDAANAGGGNGGALGGGGFPDFGHGAASDSL 179

Query: 179 H-SRGMGSKHDIGSS--GSAEGRGGSSGSQDGGETLYLKGADDGN 220
           H S   GSK D+G +      G    S   DGGETLYLK ADDGN
Sbjct: 180 HRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGGETLYLKSADDGN 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087914|emb|CBI35197.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 165/213 (77%), Gaps = 25/213 (11%)

Query: 8   MQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAA 67
           MQPMMAAYYP+NVTTDHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQRNLMYLAA
Sbjct: 1   MQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAA 60

Query: 68  IADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQQFSVLQQ 127
           IAD+QPQPP++HAQF   GI+QPGAHYMQHQQ+Q MTPQSL+AARSSM+YSQQ FS LQQ
Sbjct: 61  IADSQPQPPTMHAQFPPSGIVQPGAHYMQHQQAQQMTPQSLLAARSSMLYSQQPFSALQQ 120

Query: 128 QQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGLHSRGMGSKH 187
           QQA+H QLGM SGGS+GLHMLQSEGS  GG+G+LG                         
Sbjct: 121 QQAIHSQLGMGSGGSAGLHMLQSEGSNPGGNGTLGT------------------------ 156

Query: 188 DIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
           D+G++    G        DGGETLYLK A+DGN
Sbjct: 157 DMGNA-EGRGGNSGGQGGDGGETLYLKAAEDGN 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641340|gb|ACU20947.1| unknown [Glycine max]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 160/197 (81%), Gaps = 11/197 (5%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQP+MAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQ+RLQR
Sbjct: 1   MQQHLMQMQPIMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQQ 120
           NLMYLAAIAD+QPQP  +  Q+ S G+MQ GAHYMQ QQ+Q M+ Q LMA+RSS++YSQQ
Sbjct: 61  NLMYLAAIADSQPQPSPMPGQYPSSGLMQQGAHYMQAQQAQQMSQQQLMASRSSLLYSQQ 120

Query: 121 QFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGG-FPDFGRGSSGEGLH 179
            FSVLQQQQ +H QLGMSS GS GLHMLQ+E +  GG+ ++G GG FPDF R +SG    
Sbjct: 121 PFSVLQQQQGMHSQLGMSSNGSQGLHMLQTEATNVGGNATIGTGGRFPDFVRIASG---- 176

Query: 180 SRGMGSKHDIGSSGSAE 196
                 K DIGSSG  E
Sbjct: 177 ------KQDIGSSGEGE 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573124|ref|XP_003554714.1| PREDICTED: uncharacterized protein LOC100809843 [Glycine max]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 170/223 (76%), Gaps = 16/223 (7%)

Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADAQPQPPSVHAQFSSGGIM-QPGAHYMQHQQSQPMTPQSLMAARSSMVYSQ 119
           NLMYLAAIAD+QPQPP++  Q+   G+M Q   +    QQ+Q MTPQ LMAARSS++Y+Q
Sbjct: 61  NLMYLAAIADSQPQPPTMSGQYPPSGMMQQGAQYMQAQQQAQQMTPQQLMAARSSLLYAQ 120

Query: 120 QQFSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRG--SSGEG 177
           Q +S LQQQQA+H  L    G SSGLHMLQSEGS         GGGFPDF RG  S+GEG
Sbjct: 121 QPYSALQQQQAMHSAL----GSSSGLHMLQSEGSNVN-----VGGGFPDFVRGGSSTGEG 171

Query: 178 LHSRGMGSKHDIGSSGSAEGRGGSSGSQDGGETLYLKGADDGN 220
           LHS G G    IGSS   E  G S G  +GGE LYLK ADDGN
Sbjct: 172 LHSGGRGI---IGSS-KQEMGGSSEGRGEGGENLYLKVADDGN 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437822|ref|XP_002262678.1| PREDICTED: uncharacterized protein LOC100244659 [Vitis vinifera] gi|297744112|emb|CBI37082.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/226 (68%), Positives = 174/226 (76%), Gaps = 12/226 (5%)

Query: 1   MQQHLMQMQPMMA-AYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQ 59
           MQQHLMQMQPMMA ++  +N+TTDHIQQYLDENKSLILKI+ESQNSGKLSECAENQARLQ
Sbjct: 1   MQQHLMQMQPMMAGSHNLSNITTDHIQQYLDENKSLILKILESQNSGKLSECAENQARLQ 60

Query: 60  RNLMYLAAIADAQPQPPSVHAQFSSGGIMQPGAHYMQHQQSQPMTPQSLMAARSSMVYSQ 119
           RNLMYLAAIAD QPQPPS+ AQFS   +MQPG +YMQHQQSQ M PQSLMAAR+ M+Y+Q
Sbjct: 61  RNLMYLAAIADCQPQPPSLQAQFSPNMVMQPGVNYMQHQQSQQMMPQSLMAARAPMLYAQ 120

Query: 120 QQ-FSVLQQQQALHGQLGMSSGGSSGLHMLQSEGSTAGGSGSLGGGGFPDFGRGSSGEGL 178
           Q  +  LQQQQAL  QLGMSS G  G+HMLQSE +  G     G G F D GR  +GEGL
Sbjct: 121 QHPYLALQQQQALQSQLGMSSTGMGGIHMLQSEPNVGGN----GTGAFSDLGRSMTGEGL 176

Query: 179 H--SRGMG--SKHDIGSSGSAEGRGGSSGSQ--DGGETLYLKGADD 218
              SRG+G  SK D+GS GSAEGR G  G Q  D GE LY K A++
Sbjct: 177 SAVSRGLGSASKQDVGSVGSAEGRRGYLGGQGADKGEALYFKSAEE 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2148810	210	AN3 "ANGUSTIFOLIA 3" [Arabidop	0.481	0.504	0.778	2.3e-44
TAIR|locus:2134558	223	GIF3 "GRF1-interacting factor	0.372	0.367	0.611	8e-21
TAIR|locus:2035232	229	GIF2 "GRF1-interacting factor	0.336	0.323	0.576	8.4e-21
UNIPROTKB|Q15532	418	SS18 "Protein SSXT" [Homo sapi	0.327	0.172	0.430	4.3e-11
UNIPROTKB|F1NK13	420	SS18 "Uncharacterized protein"	0.327	0.171	0.430	7.2e-11
UNIPROTKB|F1SBA6	418	SS18 "Uncharacterized protein"	0.327	0.172	0.430	9.1e-11
MGI|MGI:107708	418	Ss18 "synovial sarcoma translo	0.327	0.172	0.430	1.5e-10
UNIPROTKB|F1NW13	399	SS18L1 "Uncharacterized protei	0.431	0.238	0.376	2.6e-10
UNIPROTKB|B4DLD3	395	SS18 "cDNA FLJ58120, highly si	0.286	0.159	0.442	7e-10
UNIPROTKB|Q08E31	402	SS18L1 "Calcium-responsive tra	0.422	0.231	0.383	7.2e-10

TAIR|locus:2148810 AN3 "ANGUSTIFOLIA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 88/113 (77%), Positives = 100/113 (88%)

Query:    13 AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ 72
             A YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIAD+Q
Sbjct:    13 AGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72

Query:    73 PQPPSVHAQFSS--GGIMQP--GAHYMQHQQS---QPMTPQSLMAARSSMVYS 118
             PQPPSVH+Q+ S  GG++Q   G+HY+Q QQ+   Q MT QSLMAARSSM+Y+
Sbjct:    73 PQPPSVHSQYGSAGGGMIQGEGGSHYLQQQQATQQQQMTQQSLMAARSSMLYA 125

GO:0005634 "nucleus" evidence=ISM

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048366 "leaf development" evidence=IMP

GO:0008283 "cell proliferation" evidence=IEP;RCA;IMP

GO:0009955 "adaxial/abaxial pattern specification" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2134558 GIF3 "GRF1-interacting factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 52/85 (61%), Positives = 63/85 (74%)

Query:    18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPS 77
             NN+TT+ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYLAAIADAQPQPP+
Sbjct:    19 NNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPA 78

Query:    78 VHAQFSSGGIMQPGAHYMQHQQSQP 102
               A  +SG  M P A        QP
Sbjct:    79 --ATLTSGA-MTPQAMAPNPSSMQP 100

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IEP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2035232 GIF2 "GRF1-interacting factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 49/85 (57%), Positives = 62/85 (72%)

Query:    28 YLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPPS--------VH 79
             YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYLAAIADAQP PP+        V 
Sbjct:    64 YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVA 123

Query:    80 AQFSS--GGIMQPGAHYMQHQQSQP 102
             AQ ++   G MQP +++MQH Q+ P
Sbjct:   124 AQMATPHSG-MQPPSYFMQHPQASP 147

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IEP

GO:0048366 "leaf development" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

UNIPROTKB|Q15532 SS18 "Protein SSXT" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 34/79 (43%), Positives = 46/79 (58%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             +T   IQ+ LD+N  LI  I++SQN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct:    16 ITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLL 75

Query:    73 PQPPSVHAQFSSGGIMQPG 91
             P PP+ +     GG+ Q G
Sbjct:    76 PAPPTQNMPMGPGGMNQSG 94

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|F1NK13 SS18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
 Identities = 34/79 (43%), Positives = 45/79 (56%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             +T   IQ+ LDEN  LI  I++ QN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct:    17 ITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLL 76

Query:    73 PQPPSVHAQFSSGGIMQPG 91
             P PP+ +     GG+ Q G
Sbjct:    77 PAPPTQNMPMGPGGMSQSG 95

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

UNIPROTKB|F1SBA6 SS18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 34/79 (43%), Positives = 45/79 (56%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             +T   IQ+ LDEN  LI  I++ QN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct:    16 ITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLL 75

Query:    73 PQPPSVHAQFSSGGIMQPG 91
             P PP+ +     GG+ Q G
Sbjct:    76 PAPPTQNMPMGPGGMNQSG 94

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

MGI|MGI:107708 Ss18 "synovial sarcoma translocation, Chromosome 18" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 34/79 (43%), Positives = 44/79 (55%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             +T   IQ+ LDEN  LI  I++ QN GK SEC++ Q  L  NL+YLA IAD+        
Sbjct:    16 ITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVYLATIADSNQNMQSLL 75

Query:    73 PQPPSVHAQFSSGGIMQPG 91
             P PP+       GG+ Q G
Sbjct:    76 PAPPTQTMPMGPGGMSQSG 94

GO:0000226 "microtubule cytoskeleton organization" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IGI;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0042493 "response to drug" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=IDA

UNIPROTKB|F1NW13 SS18L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 41/109 (37%), Positives = 57/109 (52%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct:    20 VTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 79

Query:    73 PQPPSVHAQFSSGGIMQPGAHYMQHQQSQ-------PMTPQSLMAARSS 114
             P PP+ +     GG+ Q  ++   H QS         + P SLM ++ S
Sbjct:    80 PAPPTQNINLGPGGMTQSASNQSLHSQSNLSDAIGTGLPPSSLMQSQIS 128

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

UNIPROTKB|B4DLD3 SS18 "cDNA FLJ58120, highly similar to SSXT protein" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
 Identities = 31/70 (44%), Positives = 41/70 (58%)

Query:    29 LDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ-------PQPPSVHAQ 81
             LD+N  LI  I++SQN GK SEC++ Q  L  NL+YLA IAD+        P PP+ +  
Sbjct:     2 LDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMP 61

Query:    82 FSSGGIMQPG 91
                GG+ Q G
Sbjct:    62 MGPGGMNQSG 71

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

UNIPROTKB|Q08E31 SS18L1 "Calcium-responsive transactivator" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 41/107 (38%), Positives = 54/107 (50%)

Query:    20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQ------- 72
             VT   IQ+ LDEN  LI  I++ Q+ GK +EC + Q  L RNL+YLA IAD+        
Sbjct:    16 VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query:    73 PQPPSVHAQFSSGGIMQPGAHYMQHQQSQ-------PMTPQSLMAAR 112
             P PP+       GG+ Q G+    H Q          + P SLM A+
Sbjct:    76 PAPPTQSMTLGPGGLSQSGSAQGLHSQGSLSDAIGAGLPPSSLMQAQ 122

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L8A5	GIF1_ARATH	No assigned EC number	0.5932	0.8818	0.9238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_2010006 SubName- Full=Putative uncharacterized protein; (220 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam05030	66	pfam05030, SSXT, SSXT protein (N-terminal region)	2e-12

>gnl|CDD|147290 pfam05030, SSXT, SSXT protein (N-terminal region)

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQP 73
          ++   IQ+ LDEN  LI  I E QN G+ +EC + Q  L RNL+YLA +AD   
Sbjct: 6  ISQSTIQKLLDENDQLIQCIQEYQNKGRATECVQYQQILHRNLVYLATLADPNT 59

The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG3227	231	consensus Calcium-responsive transcription coactiv	100.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	99.95

>KOG3227 consensus Calcium-responsive transcription coactivator [Transcription]

Probab=100.00  E-value=2.8e-43  Score=306.37  Aligned_cols=141  Identities=43%  Similarity=0.552  Sum_probs=114.2

Q ss_pred             CcccccccccccccCCCCCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhccCCCC-----
Q 027673            1 MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQP-----   75 (220)
Q Consensus         1 mqq~~~qm~pmm~~~~p~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADsqp~p-----   75 (220)
                      ||.+.+.++.++.-+.+.+||+|+||||||||++||+||+|||||||+.||++||++|||||||||+|||++|++     
T Consensus         1 mq~p~s~~~~~~~~~g~~~vt~~~IQk~LdEN~~LI~~I~e~Qn~Gk~~EC~qyq~~LhrNL~YLA~iAD~qp~pps~~~   80 (231)
T KOG3227|consen    1 MQSPMSVAFVAPRQRGKGEVTSEQIQKMLDENKHLIQCIVESQNKGKLSECAQYQALLHRNLVYLATIADSQPTPPSLLP   80 (231)
T ss_pred             CCCCccccccccccCCCCccCHHHHHHHHHhhhHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHhhcCCCCCcCCC
Confidence            566777777767777889999999999999999999999999999999999999999999999999999999775     


Q ss_pred             --CCCCCCCCCCCCCCCCCc---cccccccCCCC---cccccccccccccccc-hhhH-----HHHHHHHhhccccccCC
Q 027673           76 --PSVHAQFSSGGIMQPGAH---YMQHQQSQPMT---PQSLMAARSSMVYSQQ-QFSV-----LQQQQALHGQLGMSSGG  141 (220)
Q Consensus        76 --pt~~~q~~p~~~~Q~g~~---~mq~~q~~~m~---~q~~~~~r~~~~~~~q-~~~~-----~qqQq~~~~q~gm~~~g  141 (220)
                        |++.+.+.|.+..+++++   .|++.++-.|.   |+++|++|.+++|.++ ++++     +++|+++++++++||+|
T Consensus        81 ~pptq~~~~gpg~~~~~q~pp~~~mQq~q~d~m~~glPpg~~~qrq~~q~~~~~q~q~pqQq~~~hQqa~~~~~g~~p~G  160 (231)
T KOG3227|consen   81 APPTQNMGMGPGPGSQSQPPPQYFMQQHQSDGMVGGLPPGIFAQRQPLQQGQPQQQQQPQQQQQQHQQAMTSHSGIRPMG  160 (231)
T ss_pred             CCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccchhccCcccccchhhhhhHHHHHHHHhhccCccc
Confidence              445566777776665544   35555554443   6789999999999544 3322     34667899999999966

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=99.95  E-value=6.7e-29  Score=182.19  Aligned_cols=59  Identities=49%  Similarity=0.701  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHhhhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 027673           18 NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADAQPQPP   76 (220)
Q Consensus        18 ~~it~e~IQk~LDEN~qLI~~I~E~QNkGk~~Ec~qYQq~LhRNLvYLAtIADsqp~pp   76 (220)
                      ..+|+++||||||||++||+||+||||+||+.||++||++|||||||||+|||+++...
T Consensus         4 ~~~~~~~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec~qyq~~LhrNL~yLA~iAD~~~~~~   62 (65)
T PF05030_consen    4 AQITTEQIQKMLDENDQLIQCIQEYQNKGRAQECVQYQQILHRNLVYLATIADASQNSQ   62 (65)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            57999999999999999999999999999999999999999999999999999997654

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00