Citrus Sinensis ID: 027686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPEIINPLTKA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHccccccccccccccccccccccEEEEcccccHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matgnrtgvyrkkrdslksaraplsssasgsagpVIEMVSGsllrsnrssyaplstedpgpsssdafsvglppawvddaEEIAnlssfgdgkqdQHMIEILTYEITDLLRGSEKRLDKlsaagssedsnlRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQqkegcdgvdlemnfnedkyrleddgfsdggfdahqmmklnncrksssfpeiinpltka
Flexible Loop (DISEMBL)
matgnrtgvyrkkrdslksaraplsssasgsagpvIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIANLssfgdgkqdqHMIEILTYEITDLLRGSEKRLDKLSaagssedsnlrKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKlnncrksssfpeiinpltka
Low Complexity Region (SEG)
MATGNRTGVYRKKRDslksaraplsssasgsagpVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPEIINPLTKA
Disordered region (IsUnstruct)
************************************************************************PAWVDDAEEIANLSSFG***QDQHMIEILTYEITDLLR**************************************************************************************************************
Disordered Region (DISOPRED)
MATGNRTGVYRKKR******************************************************VGLPPAWVDDAEEIAN************MIEILTYEITDLLRGS********************NVQHSLATDLQNHSMDLRKNHSTY*********************************************************INPLT**
Disordered Region (DISEMBL)
*******************************AGPVIEMVSGSLLRSNRS****************AFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDK**************NVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPEIINPLTKA
Disordered Region (DISPRO)
****NRTGVYRKKRDSLKSA*******************SGSLLRS*RSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQK****GVDLE************DGFSDGGFDAHQMMKLNNCRKSSSFPEIINPLTK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPEIINPLTKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9SWH4	323	Syntaxin-42 OS=Arabidopsi	yes	no	0.913	0.622	0.623	6e-67
O65359	322	Syntaxin-41 OS=Arabidopsi	no	no	0.927	0.633	0.579	2e-62
Q9SUJ1	331	Syntaxin-43 OS=Arabidopsi	no	no	0.931	0.619	0.547	5e-61
Q8BVI5	326	Syntaxin-16 OS=Mus muscul	yes	no	0.477	0.322	0.276	8e-06
O14662	325	Syntaxin-16 OS=Homo sapie	no	no	0.477	0.323	0.286	2e-05

>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1

 Score =  253 bits (646), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 156/223 (69%), Gaps = 22/223 (9%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
           MAT NRT VYRK RD+ KSARAPLS SAS S  GPVIEMVSGS  RSN SSYAPL++ DP
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDP 60

Query: 60  GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
           GPSSSDAF++G+PPAWVDD+EEI                    A + +FGD K     +E
Sbjct: 61  GPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVE 120

Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
           +LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SLATDLQN SM+LR+  STYLK 
Sbjct: 121 MLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180

Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
           LQQQKEG D VDLE N N    RL E+D     GFD HQ +KL
Sbjct: 181 LQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 223

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/233 (57%), Positives = 160/233 (68%), Gaps = 29/233 (12%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSA-----SGSAGPVIEMVSGSLLRSNRSSYAPLS 55
           MAT NRT ++RK R+SL+S RAPLSSS+     SG  GPVIEM S SLL  NRS YAP+S
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRS-YAPIS 59

Query: 56  TEDPGPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQ 95
           TEDPG SS  A +VGLPPAWVD +EEI                    A + SFGDGK+DQ
Sbjct: 60  TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query: 96  HMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHST 155
           H IE LT EIT LL+ SEK+L +LSA+G SEDSN+RKNVQ SLATDLQ  SM+LRK  ST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query: 156 YLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSS 208
           YLK L+QQKE  DG+DLEMN + ++YR E+D F D   + HQM K+    + S
Sbjct: 180 YLKRLRQQKE--DGMDLEMNLSRNRYRPEEDDFGD-MLNEHQMSKIKKSEEVS 229

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2

 Score =  234 bits (596), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 155/241 (64%), Gaps = 36/241 (14%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSA-------------GPVIEMVSGSLLRSN 47
           MAT NRT ++RK R+SL+S RAP+ SS+S +              GPVIEM S SLL  N
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 48  RSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSS 87
           RS YAP+STEDPG SS    +VGLPP WVD +EEI                    A + S
Sbjct: 61  RS-YAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPS 119

Query: 88  FGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSM 147
           FGDGK+DQH IE LT E+T LL+ SEK+L +LSAAG SEDSN+RKNVQ SLATDLQN SM
Sbjct: 120 FGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSM 179

Query: 148 DLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKS 207
           +LRK  STYLK L+ QKE  DG DLEMN N  +Y+ EDD F D  F  HQM K+    + 
Sbjct: 180 ELRKKQSTYLKRLRLQKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSEEI 237

Query: 208 S 208
           S
Sbjct: 238 S 238

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 25/130 (19%)

Query: 61  PSSSDAFSVGLPPAWVDDAEEIA---------------------NLSSFGDGKQDQHMIE 99
           P ++   +   PP WVD  +EI                      N  +  D  +++H IE
Sbjct: 64  PEAAIGVTKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIE 123

Query: 100 ILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHST 155
           I T E+T L    ++ +  L +    A S ++  L +NV  SLA  LQ  S   R   S 
Sbjct: 124 ITTQEVTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSD 183

Query: 156 YLKHLQQQKE 165
           YLK ++ ++E
Sbjct: 184 YLKRMKNREE 193

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 24/129 (18%)

Query: 61  PSSSDAFSVGLPPAWVDDAEEIA---------------------NLSSFGDGKQDQHMIE 99
           P ++   +   PP WVD  +EI                      N  +  D  +++H IE
Sbjct: 64  PEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIE 123

Query: 100 ILTYEITDLLRGSEKRLDKL---SAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTY 156
           I T EIT L    ++ +  L   + A S ++  L  NV  SLA  LQ  S   R   S Y
Sbjct: 124 ITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGY 183

Query: 157 LKHLQQQKE 165
           LK ++ ++E
Sbjct: 184 LKRMKNREE 192

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
147771378	318	hypothetical protein VITISV_021620 [Viti	0.936	0.647	0.620	1e-70
225437475	318	PREDICTED: syntaxin-41 [Vitis vinifera]	0.936	0.647	0.620	2e-70
255564286	342	syntaxin, putative [Ricinus communis] gi	0.945	0.608	0.632	7e-69
297809933	323	hypothetical protein ARALYDRAFT_490353 [	0.913	0.622	0.627	6e-66
18411871	323	syntaxin-42 [Arabidopsis thaliana] gi|28	0.913	0.622	0.623	3e-65
356505608	320	PREDICTED: syntaxin-43-like [Glycine max	0.936	0.643	0.615	9e-65
358248374	324	uncharacterized protein LOC100803629 [Gl	0.95	0.645	0.608	8e-64
224064472	323	predicted protein [Populus trichocarpa]	0.940	0.640	0.616	9e-64
3912925	321	syntaxin-like protein [Arabidopsis thali	0.904	0.619	0.618	3e-63
3377798	287	T2H3.1 [Arabidopsis thaliana]	0.904	0.693	0.618	5e-63

>gi|147771378|emb|CAN62995.1| hypothetical protein VITISV_021620 [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 161/229 (70%), Gaps = 23/229 (10%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPG 60
           MAT NRT V+RK RD++ S RAP   S   S G VIEM S SL  SNRSSY PLSTEDPG
Sbjct: 1   MATMNRTVVFRKHRDAVNSVRAPAGXS---SXGAVIEMASTSLFHSNRSSYTPLSTEDPG 57

Query: 61  PSSSDAFSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEI 100
           PSS DAF+VGLPPAWVD +EE+A                     + SF DGK+DQ  IE 
Sbjct: 58  PSSKDAFTVGLPPAWVDVSEEVAANIQRSRVKMAELVKAQAKALMPSFEDGKEDQRKIES 117

Query: 101 LTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHL 160
           LT EITDLL+ SEKRL KLSA G SEDSN+RKNVQ SLATDLQN S++LRK  STYLK L
Sbjct: 118 LTQEITDLLKRSEKRLQKLSARGPSEDSNVRKNVQRSLATDLQNLSLELRKRQSTYLKRL 177

Query: 161 QQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSS 209
           +QQKEG DGVDLEMN NE+K+RL+DD F D GF+ HQM KL    K ++
Sbjct: 178 RQQKEGHDGVDLEMNLNENKFRLDDDEFGDMGFNEHQMAKLKKSEKFTA 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437475|ref|XP_002273927.1| PREDICTED: syntaxin-41 [Vitis vinifera] gi|297743940|emb|CBI36910.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 161/229 (70%), Gaps = 23/229 (10%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPG 60
           MAT NRT V+RK RD++ S RAP   S   S G VIEM S SL  SNRSSY PLSTEDPG
Sbjct: 1   MATMNRTVVFRKHRDAVNSVRAPAGVS---SGGAVIEMASTSLFHSNRSSYTPLSTEDPG 57

Query: 61  PSSSDAFSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEI 100
           PSS DAF+VGLPPAWVD +EE+A                     + SF DGK+DQ  IE 
Sbjct: 58  PSSKDAFTVGLPPAWVDVSEEVAANIQRSRVKMAELVKAQAKALMPSFEDGKEDQRKIES 117

Query: 101 LTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHL 160
           LT EITDLL+ SEKRL KLSA G SEDSN+RKNVQ SLATDLQN S++LRK  STYLK L
Sbjct: 118 LTQEITDLLKRSEKRLQKLSARGPSEDSNVRKNVQRSLATDLQNLSLELRKRQSTYLKRL 177

Query: 161 QQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSS 209
           +QQKEG DGVDLEMN NE+K+RL+DD F D GF+ HQM KL    K ++
Sbjct: 178 RQQKEGHDGVDLEMNLNENKFRLDDDEFGDMGFNEHQMAKLKKSEKFTA 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564286|ref|XP_002523140.1| syntaxin, putative [Ricinus communis] gi|223537702|gb|EEF39325.1| syntaxin, putative [Ricinus communis]

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 146/231 (63%), Positives = 169/231 (73%), Gaps = 23/231 (9%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSA--GPVIEMVSGSLLRSNRSSYAPLSTED 58
           MAT NRT  ++K RD++KS RAPLSSS+S S   GPVIEMVS S LRS  +SYAPLSTED
Sbjct: 1   MATRNRTLHFKKHRDAVKSVRAPLSSSSSASGSNGPVIEMVSTSFLRSKHASYAPLSTED 60

Query: 59  PGPSSS-DAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHM 97
           PGPSSS DAF++GLPPAWVDD+EE+                    A + SFGDG+ DQ M
Sbjct: 61  PGPSSSSDAFTIGLPPAWVDDSEEVSANIQRIRIKMAELVKAHAKALMPSFGDGEDDQRM 120

Query: 98  IEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYL 157
           IE LT EITDLLR SEKRL KLSA+ S EDSN+RKNVQ SLATDLQN S+DLR+  STYL
Sbjct: 121 IETLTREITDLLRKSEKRLQKLSASESPEDSNVRKNVQRSLATDLQNLSVDLRRRQSTYL 180

Query: 158 KHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSS 208
           K LQQQKEG DGVD EMN NE+K+R EDD F+D GF  +Q+ KL   ++ S
Sbjct: 181 KRLQQQKEGHDGVDFEMNSNENKFRYEDDEFNDVGFSEYQLTKLKKSKQLS 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809933|ref|XP_002872850.1| hypothetical protein ARALYDRAFT_490353 [Arabidopsis lyrata subsp. lyrata] gi|297318687|gb|EFH49109.1| hypothetical protein ARALYDRAFT_490353 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/223 (62%), Positives = 157/223 (70%), Gaps = 22/223 (9%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
           MAT NRT VYRK RD+ KSARAPLS SAS S  GPVIEMVSGS  RSN SSYAPL++ DP
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSNDP 60

Query: 60  GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
           GPSSSDAF++G+PPAWVDD+EEI                    A + +FGD K     +E
Sbjct: 61  GPSSSDAFTIGMPPAWVDDSEEITYNIQKVRDKMSELAKAHSKALMPTFGDNKGIYREVE 120

Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
           +LT+EITDLLR SEKRL KLS  G SE+SNLRKNVQ SLATDLQN SM+LR+  STYLK 
Sbjct: 121 MLTHEITDLLRKSEKRLQKLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180

Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
           LQQQKEG D VDLE N N    RL E+D     GFD HQ +KL
Sbjct: 181 LQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411871|ref|NP_567223.1| syntaxin-42 [Arabidopsis thaliana] gi|28380167|sp|Q9SWH4.1|SYP42_ARATH RecName: Full=Syntaxin-42; Short=AtSYP42; Short=AtTLG2b gi|5059352|gb|AAD38983.1|AF154574_1 syntaxin of plants 42 [Arabidopsis thaliana] gi|110738513|dbj|BAF01182.1| hypothetical protein [Arabidopsis thaliana] gi|332656736|gb|AEE82136.1| syntaxin-42 [Arabidopsis thaliana]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 156/223 (69%), Gaps = 22/223 (9%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
           MAT NRT VYRK RD+ KSARAPLS SAS S  GPVIEMVSGS  RSN SSYAPL++ DP
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDP 60

Query: 60  GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
           GPSSSDAF++G+PPAWVDD+EEI                    A + +FGD K     +E
Sbjct: 61  GPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVE 120

Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
           +LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SLATDLQN SM+LR+  STYLK 
Sbjct: 121 MLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180

Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
           LQQQKEG D VDLE N N    RL E+D     GFD HQ +KL
Sbjct: 181 LQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505608|ref|XP_003521582.1| PREDICTED: syntaxin-43-like [Glycine max]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 165/234 (70%), Gaps = 28/234 (11%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPG 60
           MAT NRT  +RK RD++KS RAPLSSSA   + PVIEMV+ SLL SNRSSYAPLST++  
Sbjct: 1   MATRNRTLEFRKHRDAVKSVRAPLSSSA---SSPVIEMVTTSLLPSNRSSYAPLSTQEHA 57

Query: 61  PSSS-DAFSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIE 99
           PS+S DAF+VGLPP+WVDD+EEIA                     + SFGDGK+DQ  IE
Sbjct: 58  PSTSRDAFTVGLPPSWVDDSEEIATNIQRARVRISELTKAHAKALMPSFGDGKEDQRHIE 117

Query: 100 ILTYEITDLLRGSEKRLDKLSAA-GSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLK 158
            LT EIT LLR SE RL +LSAA GSSEDSN+RKNVQ S ATDLQN SMDLR+  S YLK
Sbjct: 118 TLTQEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSHATDLQNLSMDLRRKQSAYLK 177

Query: 159 HLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPE 212
           HLQQQ+EG DGVDLEMNFN  K+   +D FSD GF   QM KL   ++S  F E
Sbjct: 178 HLQQQQEGYDGVDLEMNFNGSKFVSHNDEFSDVGFSEEQMTKL---KRSEQFSE 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248374|ref|NP_001239871.1| uncharacterized protein LOC100803629 [Glycine max] gi|255637864|gb|ACU19251.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 166/235 (70%), Gaps = 26/235 (11%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSS-YAPLSTEDP 59
           MAT NRT  +RK RD++KS RAPLSSSAS S GPVIEMV+ SLL  NRSS YA LST++P
Sbjct: 1   MATRNRTIEFRKHRDAVKSVRAPLSSSASASTGPVIEMVTTSLLPPNRSSSYALLSTQEP 60

Query: 60  GPSSS-DAFSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMI 98
            PS+S DAF+VGLPP+WVDD+EEIA                     + SFGDGK+DQ  I
Sbjct: 61  APSTSRDAFTVGLPPSWVDDSEEIATNIQRARVKISELTKAHAKALMPSFGDGKEDQRHI 120

Query: 99  EILTYEITDLLRGSEKRLDKLSAA-GSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYL 157
           E LT EIT LLR SE RL +LSAA GSSEDSN+RKNVQ SLATDLQN SMDLR+  S YL
Sbjct: 121 ETLTQEITSLLRKSEVRLRRLSAAAGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYL 180

Query: 158 KHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPE 212
           K LQQQ+EG DG+DLEM+F   K+  ++D FSD GF   QM KL   ++S  F E
Sbjct: 181 KRLQQQQEGYDGIDLEMSFTGSKFGSQNDEFSDVGFSEEQMTKL---KRSEQFSE 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064472|ref|XP_002301493.1| predicted protein [Populus trichocarpa] gi|222843219|gb|EEE80766.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 143/232 (61%), Positives = 167/232 (71%), Gaps = 25/232 (10%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPG 60
           MAT NRT VY+K RD +KS RAPLSSS  GS+GPVIEMVS S LRS  SSY PLSTEDPG
Sbjct: 1   MATRNRTVVYKKHRDEVKSVRAPLSSSLPGSSGPVIEMVSASFLRSQHSSYTPLSTEDPG 60

Query: 61  PSSS--DAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMI 98
           PS+S  DAF++GLP AWVDD+EEI                    A + +FGDGK+D+ +I
Sbjct: 61  PSTSSGDAFTIGLPLAWVDDSEEISLNIQRIRTKMGELVKAHAKALMPTFGDGKEDERVI 120

Query: 99  EILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLK 158
           E LT EIT LLR S  RL K+SA+ S EDSN+RKNVQ +LAT+LQN SMDLR+  S YLK
Sbjct: 121 EGLTREITGLLRNSGTRLKKISASESFEDSNVRKNVQRALATELQNLSMDLRRKQSMYLK 180

Query: 159 HLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSF 210
            LQQQKEG DGVDLEM+ N +K+R EDDGFSD GF+  QM+KL   +KS  F
Sbjct: 181 RLQQQKEGHDGVDLEMSLNANKFRSEDDGFSDVGFNEGQMLKL---KKSEQF 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3912925|gb|AAC78709.1| syntaxin-like protein [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 155/223 (69%), Gaps = 24/223 (10%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
           MAT NRT VYRK RD+ KSARAPLS SAS S  GPVIEMVSGS  RSN SSYAPL++ DP
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDP 60

Query: 60  GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
           GPSSSDAF++G+PPAWVDD+EEI                    A + +FGD K     +E
Sbjct: 61  GPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVE 120

Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
           +LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SLATDLQN SM+LR+  STYLK 
Sbjct: 121 MLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180

Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
           LQQQKE  D VDLE N N    RL E+D     GFD HQ +KL
Sbjct: 181 LQQQKE--DEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3377798|gb|AAC28171.1| T2H3.1 [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 155/223 (69%), Gaps = 24/223 (10%)

Query: 1   MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
           MAT NRT VYRK RD+ KSARAPLS SAS S  GPVIEMVSGS  RSN SSYAPL++ DP
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDP 60

Query: 60  GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
           GPSSSDAF++G+PPAWVDD+EEI                    A + +FGD K     +E
Sbjct: 61  GPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVE 120

Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
           +LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SLATDLQN SM+LR+  STYLK 
Sbjct: 121 MLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180

Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
           LQQQKE  D VDLE N N    RL E+D     GFD HQ +KL
Sbjct: 181 LQQQKE--DEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:505006427	323	SYP42 "syntaxin of plants 42"	0.559	0.380	0.612	4.2e-55
TAIR|locus:2148513	322	SYP41 "syntaxin of plants 41"	0.559	0.381	0.611	2.9e-50
TAIR|locus:2078042	331	SYP43 "syntaxin of plants 43"	0.563	0.374	0.626	1.3e-49
UNIPROTKB|F1NSX3	331	STX16 "Uncharacterized protein	0.509	0.338	0.285	7.9e-07
UNIPROTKB|J9P6Z4	273	STX16 "Uncharacterized protein	0.486	0.391	0.307	1e-06
UNIPROTKB|E2RR62	297	STX16 "Uncharacterized protein	0.486	0.360	0.307	1.5e-06
ZFIN|ZDB-GENE-060810-113	324	stx16 "syntaxin 16" [Danio rer	0.486	0.330	0.303	1.9e-06
UNIPROTKB|E2RR72	326	STX16 "Uncharacterized protein	0.486	0.328	0.307	2.2e-06
UNIPROTKB|A5GFS9	305	STX16 "Uncharacterized protein	0.513	0.370	0.297	6.1e-06
UNIPROTKB|A5GFT0	309	STX16 "Syntaxin 16" [Sus scrof	0.513	0.365	0.297	6.4e-06

TAIR|locus:505006427 SYP42 "syntaxin of plants 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 76/124 (61%), Positives = 86/124 (69%)

Query:    79 AEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSL 138
             A   A + +FGD K     +E+LT+EITDLLR SEKRL  LS  G SE+SNLRKNVQ SL
Sbjct:   100 AHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSL 159

Query:   139 ATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQ 197
             ATDLQN SM+LR+  STYLK LQQQKEG D VDLE N N    RL E+D     GFD HQ
Sbjct:   160 ATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQ 219

Query:   198 MMKL 201
              +KL
Sbjct:   220 TIKL 223

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IGI

GO:0007034 "vacuolar transport" evidence=IGI

GO:0009306 "protein secretion" evidence=IGI

GO:1900150 "regulation of defense response to fungus" evidence=IGI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2148513 SYP41 "syntaxin of plants 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 77/126 (61%), Positives = 94/126 (74%)

Query:    83 ANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDL 142
             A + SFGDGK+DQH IE LT EIT LL+ SEK+L +LSA+G SEDSN+RKNVQ SLATDL
Sbjct:   107 ALMPSFGDGKEDQHNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDL 166

Query:   143 QNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLN 202
             Q  SM+LRK  STYLK L+QQKE  DG+DLEMN + ++YR E+D F D   + HQM K+ 
Sbjct:   167 QLLSMELRKKQSTYLKRLRQQKE--DGMDLEMNLSRNRYRPEEDDFGDM-LNEHQMSKIK 223

Query:   203 NCRKSS 208
                + S
Sbjct:   224 KSEEVS 229

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2078042 SYP43 "syntaxin of plants 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 79/126 (62%), Positives = 92/126 (73%)

Query:    83 ANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDL 142
             A + SFGDGK+DQH IE LT E+T LL+ SEK+L +LSAAG SEDSN+RKNVQ SLATDL
Sbjct:   115 ALMPSFGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDL 174

Query:   143 QNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLN 202
             QN SM+LRK  STYLK L+ QKE  DG DLEMN N  +Y+ EDD F D  F  HQM K+ 
Sbjct:   175 QNLSMELRKKQSTYLKRLRLQKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIK 232

Query:   203 NCRKSS 208
                + S
Sbjct:   233 KSEEIS 238

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007030 "Golgi organization" evidence=IGI

GO:0007034 "vacuolar transport" evidence=IGI

GO:0009306 "protein secretion" evidence=IGI

GO:1900150 "regulation of defense response to fungus" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005768 "endosome" evidence=IDA

UNIPROTKB|F1NSX3 STX16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 34/119 (28%), Positives = 56/119 (47%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSNLRKNVQHSLAT 140
             N  +  D  +++  IEI T EIT L    ++ +  L +     + +++ + +NV  SLA 
Sbjct:   114 NRPTLDDSSEEERAIEITTQEITQLFHRCQRAVQVLQSRSRTCTEQEARVLRNVVSSLAQ 173

Query:   141 DLQNHSMDLRKNHSTYLKHLQQQKEGCDGV-DLEMNFNEDKYRLEDDGFSDGGFDAHQM 198
              LQ  S + R   S YLK ++ ++E      D  +   +D    EDD   D GF   Q+
Sbjct:   174 SLQELSTNFRHAQSDYLKRMKSREERSKHFFDTSVPLMDDG---EDDTLYDRGFTDDQL 229

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|J9P6Z4 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 35/114 (30%), Positives = 54/114 (47%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLA 139
             N  +  D  + +H IEI T EIT L    ++ +  L +    A S ++  L +NV  SLA
Sbjct:    55 NRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 114

Query:   140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCD---GVDLEMNFNEDKYRLEDDGFSD 190
               LQ  S   R+  S YLK ++ ++E         + +  + D   L D GF+D
Sbjct:   115 QALQELSTSFRRAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYDRGFTD 168

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|E2RR62 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 35/114 (30%), Positives = 54/114 (47%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLA 139
             N  +  D  + +H IEI T EIT L    ++ +  L +    A S ++  L +NV  SLA
Sbjct:   108 NRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 167

Query:   140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCD---GVDLEMNFNEDKYRLEDDGFSD 190
               LQ  S   R+  S YLK ++ ++E         + +  + D   L D GF+D
Sbjct:   168 QALQELSTSFRRAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYDRGFTD 221

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

ZFIN|ZDB-GENE-060810-113 stx16 "syntaxin 16" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 34/112 (30%), Positives = 54/112 (48%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSNLRKNVQHSLAT 140
             N  +  D  +++H IEI T EIT +    ++ +  L       + +++ L  NV  SLA 
Sbjct:   108 NRPTLDDSSEEEHAIEITTQEITQMFHRCQRAVTGLQTQSYHCTEQENRLLTNVVSSLAQ 167

Query:   141 DLQNHSMDLRKNHSTYLKHLQQQKEGCDGV-DLEMNFNEDK-YRLEDDGFSD 190
              LQ  S++ R   S YLK ++ ++E      D      ED+   L D GF+D
Sbjct:   168 SLQELSLNFRHTQSGYLKRMKNREERSKHFFDSGPLVEEDEDIALYDRGFTD 219

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|E2RR72 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 35/114 (30%), Positives = 54/114 (47%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLA 139
             N  +  D  + +H IEI T EIT L    ++ +  L +    A S ++  L +NV  SLA
Sbjct:   108 NRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 167

Query:   140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCD---GVDLEMNFNEDKYRLEDDGFSD 190
               LQ  S   R+  S YLK ++ ++E         + +  + D   L D GF+D
Sbjct:   168 QALQELSTSFRRAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYDRGFTD 221

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|A5GFS9 STX16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 36/121 (29%), Positives = 56/121 (46%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLA 139
             N  +  D  + +H IEI T E+T L    ++ +  L +    A S ++  L +NV  SLA
Sbjct:    87 NRPTLDDSSEQEHAIEIATQEVTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 146

Query:   140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCDGV-DLEMNFNEDKYRLEDDGFSDGGFDAHQM 198
               LQ  S   R   S YLK ++ ++E      D  +   +D    ED+   D GF   Q+
Sbjct:   147 QALQELSTGFRLAQSGYLKRMKNREERSQHFFDTSVPLMDDG---EDNTLYDRGFTDDQL 203

Query:   199 M 199
             +
Sbjct:   204 V 204

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|A5GFT0 STX16 "Syntaxin 16" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
 Identities = 36/121 (29%), Positives = 56/121 (46%)

Query:    84 NLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLA 139
             N  +  D  + +H IEI T E+T L    ++ +  L +    A S ++  L +NV  SLA
Sbjct:    91 NRPTLDDSSEQEHAIEIATQEVTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 150

Query:   140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCDGV-DLEMNFNEDKYRLEDDGFSDGGFDAHQM 198
               LQ  S   R   S YLK ++ ++E      D  +   +D    ED+   D GF   Q+
Sbjct:   151 QALQELSTGFRLAQSGYLKRMKNREERSQHFFDTSVPLMDDG---EDNTLYDRGFTDDQL 207

Query:   199 M 199
             +
Sbjct:   208 V 208

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SWH4	SYP42_ARATH	No assigned EC number	0.6233	0.9136	0.6222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028059001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014287001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (568 aa)					•		•		0.671
	GSVIVG00034698001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (241 aa)					•		•		0.562

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
smart00503	117	smart00503, SynN, Syntaxin N-terminal domain	0.002
pfam00804	103	pfam00804, Syntaxin, Syntaxin	0.004

>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 90  DGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDL 149
             ++    I+ L  EI   L+  EK   +  A+GS+ D   RK     L    +    + 
Sbjct: 47  KLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRT-RKAQTEKLRKKFKEVMNEF 105

Query: 150 RKNHSTY 156
           ++    Y
Sbjct: 106 QRLQRKY 112

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p. Length = 117

>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 27/101 (26%)

Query: 71  LPPAWVDDAEEIAN------------------LSSFGDG-KQDQHMIEILTYEITDLLRG 111
             P + D+ EEI                    + +  D  K+ +  +E LT EI  L R 
Sbjct: 1   DLPEFFDEVEEIREEIQKIRQNLEELQKLHKRILTAPDSDKELREELEELTQEIKQLARA 60

Query: 112 SEKRLDKLS--------AAGSSEDSNLRKNVQHSLATDLQN 144
            +K+L  L            SS    +RKN   +L+   ++
Sbjct: 61  IKKKLKSLQQLNKSEQGLGHSSAVDRIRKNQLANLSKKFKD 101

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	100.0
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	98.88
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	98.74
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	98.1
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	96.25
PF14523	102	Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.	94.9
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	93.5

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-44  Score=315.53  Aligned_cols=193  Identities=39%  Similarity=0.528  Sum_probs=167.8

Q ss_pred             CCCCcchHHHHHHhhhhccCCCCCCCCCCCCCcchhhhhccccccCCCCCCCCCCCCCCCCCCCCccCCCCchhHhhHHH
Q 027686            2 ATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEE   81 (220)
Q Consensus         2 atRnrT~~Fl~yR~~~~~~R~~~~~~~~~~~g~~ie~~~~~ll~~~~~~~~~l~~~d~~~~~~~~~~~~lpP~Wvd~~ee   81 (220)
                      ||||||++|++||++++|||.+++...+  -+|++++. ++++.++.. |.+++.+|           ++||.|||..+|
T Consensus         1 atRnrT~lF~~~Rn~~~~~r~~~~~~~~--~d~~~e~~-~~lv~~~~~-~~~~~~~d-----------~lpP~wvd~~~e   65 (305)
T KOG0809|consen    1 ATRNRTELFLLYRNNASHNRQPLGDRSG--DDPVIEMA-TSLVNEAEE-GKTVSDED-----------GLPPAWVDVAEE   65 (305)
T ss_pred             CcchHHHHHHHHHhhhhhhccccccccC--cchhHHhH-hccccchhc-CCcccccc-----------CCCCcccchHHH
Confidence            7999999999999999999988743221  57888888 677765544 55555333           599999999999


Q ss_pred             hhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---CcchHHHHHHHHHHH
Q 027686           82 IAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSNLRKNVQHSL  138 (220)
Q Consensus        82 i~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~---~~~e~~i~kNvq~sL  138 (220)
                      |++                    +|+|+|++++|++||.+|++||++|++||+.|+.+.+..   ++.|..+++|++++|
T Consensus        66 v~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~l  145 (305)
T KOG0809|consen   66 VDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYL  145 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence            999                    999999999999999999999999999999999998854   689999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhhccC-CccccccccCcccCCcccCCCCCCCCCHHHHHHHHhhccccCCCc
Q 027686          139 ATDLQNHSMDLRKNHSTYLKHLQQQKEGC-DGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPE  212 (220)
Q Consensus       139 A~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~-~~~d~~~~~~~~~~~~~~~~~~d~gft~~Ql~~l~~n~~~~~e~~  212 (220)
                      |.+||.+|..||++|++|||+|+++++++ .+++..   .+..+..+++++.+.+|+++|+++++.|+.++.|||
T Consensus       146 a~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~---~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE  217 (305)
T KOG0809|consen  146 ALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSL---DNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVRERE  217 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhc---cccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHH
Confidence            99999999999999999999999999998 666533   333455667788999999999999999999999997

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=98.88  E-value=7.7e-09  Score=77.26  Aligned_cols=73  Identities=30%  Similarity=0.412  Sum_probs=62.8

Q ss_pred             CchhHhhHHHhhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686           72 PPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G  123 (220)
Q Consensus        72 pP~Wvd~~eei~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~  123 (220)
                      ||.|++.+++|.+                    .+.+ +++..+.+|+.+|.+|+++|+.|+..|+.|...        .
T Consensus         2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~   80 (103)
T PF00804_consen    2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEP   80 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence            7999999999999                    3344 447899999999999999999999999999875        2


Q ss_pred             CcchHHHHHHHHHHHHHHHHHH
Q 027686          124 SSEDSNLRKNVQHSLATDLQNH  145 (220)
Q Consensus       124 ~~~e~~i~kNvq~sLA~~LQ~L  145 (220)
                      +..+.++++|...+|+.+++++
T Consensus        81 ~~~~~ri~~nq~~~L~~kf~~~  102 (103)
T PF00804_consen   81 SSNEVRIRKNQVQALSKKFQEV  102 (103)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999998875

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.74  E-value=3.8e-08  Score=87.69  Aligned_cols=104  Identities=18%  Similarity=0.183  Sum_probs=88.6

Q ss_pred             ccCCCCchhHhhHHHhhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---
Q 027686           67 FSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---  123 (220)
Q Consensus        67 ~~~~lpP~Wvd~~eei~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~---  123 (220)
                      ....+||.||+..-+|+.                    +|+|.|+++.+.+|+.|+..|++.|.+|++.++.--..-   
T Consensus        28 e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~  107 (283)
T COG5325          28 EDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSS  107 (283)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999988877                    999999999999999999999999999999998664321   


Q ss_pred             -CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 027686          124 -SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGV  170 (220)
Q Consensus       124 -~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~~~~  170 (220)
                       ...+.....|...+++..+|..+..||+.|..|+|++....+..+..
T Consensus       108 ~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l  155 (283)
T COG5325         108 FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPL  155 (283)
T ss_pred             HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCch
Confidence             23678888999999999999999999999999999996633332333

>smart00503 SynN Syntaxin N-terminal domain

Probab=98.10  E-value=3.1e-05  Score=59.42  Aligned_cols=90  Identities=18%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------Ccc
Q 027686           72 PPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG------SSE  126 (220)
Q Consensus        72 pP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~------~~~  126 (220)
                      +|.|++.+++|..                   +..-+.....-..++.+..+|..+++.|...|+.+....      +..
T Consensus         3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~   82 (117)
T smart00503        3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSA   82 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCH
Confidence            6789999999888                   222112234556778888888888888888888887532      245


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 027686          127 DSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQ  161 (220)
Q Consensus       127 e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk  161 (220)
                      +.++++|...+|+.+++++...|++.|+.|..+.|
T Consensus        83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k  117 (117)
T smart00503       83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK  117 (117)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            78899999999999999999999999999987653

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=96.25  E-value=0.082  Score=42.24  Aligned_cols=77  Identities=17%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC-------CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686           91 GKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG-------SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ  163 (220)
Q Consensus        91 ~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~-------~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~  163 (220)
                      ....-..++.+..+|.++++.+...|+.|....       ...+.++++|...+|..+++++=..|...|..|-.+.|.+
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~  118 (151)
T cd00179          39 DPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKER  118 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999999999999999999998632       2357889999999999999999999999999999998887


Q ss_pred             hccC
Q 027686          164 KEGC  167 (220)
Q Consensus       164 ~~~~  167 (220)
                      =.+.
T Consensus       119 i~Rq  122 (151)
T cd00179         119 IQRQ  122 (151)
T ss_pred             HHHH
Confidence            7664

>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A

Probab=94.90  E-value=0.63  Score=34.82  Aligned_cols=78  Identities=18%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 027686           85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA-GSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQ  162 (220)
Q Consensus        85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~  162 (220)
                      +=+-.|..+.-..|..+..++..+++.....|+.+... .......-.+-..-.|+...+.+...|-+.|+.|..+.+.
T Consensus        22 lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~  100 (102)
T PF14523_consen   22 LGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ  100 (102)
T ss_dssp             H-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44667788888999999999999999999999999876 4455666777888899999999999999999999988764

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.50  E-value=2.4  Score=38.71  Aligned_cols=65  Identities=28%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHH---HHHHHhHhh-cCC--c-chHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027686           85 LSSFGDGKQDQHMIEILTYEITDLLRGS---EKRLDKLSA-AGS--S-EDSNLRKNVQHSLATDLQNHSMDLRKN  152 (220)
Q Consensus        85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c---~~~I~~i~~-~~~--~-~e~~i~kNvq~sLA~~LQ~LS~~FRk~  152 (220)
                      .+-|+|..   .+|..||.-|.+.+...   ...++.|.. .|+  . .=...-+||+-.|-++|-++|..|..-
T Consensus        71 ks~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~V  142 (311)
T KOG0812|consen   71 KSLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDV  142 (311)
T ss_pred             cccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHH
Confidence            78888876   36888888777764444   344444443 232  1 124567899999999999999999753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	2e-05
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	3e-05

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 50.5 bits (120), Expect = 8e-08
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 27/171 (15%)

Query: 55  STEDPGPSSSDAFSVGLPPAWVDDAEEIAN-------------------LSSFGDGKQDQ 95
            ++D    +           + +  EEI                     L+S    ++ +
Sbjct: 13  DSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTK 72

Query: 96  HMIEILTYEITDLLRGSEKRLDKLSAA--------GSSEDSNLRKNVQHSLATDLQNHSM 147
             +E L  +I         +L  +  +         SS D  +RK    +L+        
Sbjct: 73  EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMS 132

Query: 148 DLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQM 198
           +     S Y +  + + +    +      +E+   + + G          M
Sbjct: 133 EYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIM 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 22/200 (11%), Positives = 57/200 (28%), Gaps = 31/200 (15%)

Query: 24  LSSSASGSAGPVIEMVSGSLLRS--NRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEE 81
           L      +    + ++    +R              D   +  ++    L PA  +  + 
Sbjct: 318 LPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKM 374

Query: 82  IANLSSFGDG-KQDQHMIEIL-----TYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQ 135
              LS F         ++ ++       ++  ++     +L K S     +         
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV----NKLHKYSLV--EKQPKESTISI 428

Query: 136 HSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDG--FSDGGF 193
            S+  +L+    +    H + + H    K            ++D      D   +S    
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD---------SDDLIPPYLDQYFYS---H 476

Query: 194 DAHQMMKLNNCRKSSSFPEI 213
             H +  + +  + + F  +
Sbjct: 477 IGHHLKNIEHPERMTLFRMV 496

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 15/133 (11%), Positives = 37/133 (27%), Gaps = 14/133 (10%)

Query: 80  EEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA-------------GSSE 126
            E     S  D  +    ++     I+ L       L ++                  S 
Sbjct: 72  TESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVST 131

Query: 127 DSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDD 186
           D  +R++   SL+              +   +   +       V      ++   ++ + 
Sbjct: 132 DLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEH 191

Query: 187 GFSDGGFDAHQMM 199
           G ++G F   ++ 
Sbjct: 192 G-TEGIFSGMRLE 203

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 12/134 (8%), Positives = 35/134 (26%), Gaps = 2/134 (1%)

Query: 80  EEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLA 139
           + +    +       +H ++    + TDL    +  +              ++    +  
Sbjct: 33  KRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR--DGIHDTNKQAQAENSR 90

Query: 140 TDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMM 199
                   D R   S Y +  ++Q +    +       ++      D      F    + 
Sbjct: 91  QRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLN 150

Query: 200 KLNNCRKSSSFPEI 213
                   ++  E+
Sbjct: 151 ANRRGEAKTALAEV 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.34
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.33
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	98.9
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	98.88
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	98.5
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	96.15
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	94.73

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.34  E-value=1.7e-12  Score=114.02  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=87.5

Q ss_pred             CCCCchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-----
Q 027686           69 VGLPPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA-----  122 (220)
Q Consensus        69 ~~lpP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-----  122 (220)
                      ...+|.|++.+++|..                     .|.|++.+....+|+.++.+|+++|+.|+..|+.|...     
T Consensus        40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~  119 (279)
T 2xhe_B           40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ  119 (279)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4579999999999998                     27777777889999999999999999999999999751     


Q ss_pred             -------CCcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 027686          123 -------GSSE-DSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC  167 (220)
Q Consensus       123 -------~~~~-e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~  167 (220)
                             ++.. +.++++|++.+|+.+|++++..||+.|+.|++++|.+..+.
T Consensus       120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~  172 (279)
T 2xhe_B          120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ  172 (279)
T ss_dssp             HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2333 77999999999999999999999999999999999887653

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.33  E-value=2.7e-12  Score=106.50  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=83.7

Q ss_pred             CchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcchHHH
Q 027686           72 PPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNL  130 (220)
Q Consensus        72 pP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i  130 (220)
                      ||.|++.+++|..                     .|.+++......+|+.++.+|+++|+.|+..|+.|....  .+.++
T Consensus         4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~--~~~r~   81 (196)
T 1fio_A            4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG--IHDTN   81 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhhH
Confidence            8999999999988                     345545567899999999999999999999999998754  24689


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 027686          131 RKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC  167 (220)
Q Consensus       131 ~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~  167 (220)
                      ++|++.+|+.++++++..||+.|+.|++++|.+-.+.
T Consensus        82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq  118 (196)
T 1fio_A           82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ  118 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987754

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=98.90  E-value=1.2e-08  Score=89.28  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=83.2

Q ss_pred             CCCCchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhh------
Q 027686           69 VGLPPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA------  121 (220)
Q Consensus        69 ~~lpP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~------  121 (220)
                      ....|.|++.+++|..                     -|.++  .....+|+.++.+|+++|+.|...|+.|..      
T Consensus        27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~  104 (267)
T 1dn1_B           27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE  104 (267)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3468999999999998                     24443  367789999999999999999999999965      


Q ss_pred             --cCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 027686          122 --AGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEG  166 (220)
Q Consensus       122 --~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~  166 (220)
                        .+++.|.++++|+..+|+.+++++...|++.|+.|.+++|.+-.|
T Consensus       105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R  151 (267)
T 1dn1_B          105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR  151 (267)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              235678899999999999999999999999999999999987655

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=98.88  E-value=1.8e-08  Score=78.11  Aligned_cols=93  Identities=18%  Similarity=0.281  Sum_probs=80.9

Q ss_pred             CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686           71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G  123 (220)
Q Consensus        71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~  123 (220)
                      .+|.|++.+++|+.                   +..-+.......+++.++.+|+++++.|+..|+.|...        +
T Consensus         6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~   85 (127)
T 1ez3_A            6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            57899999999998                   43333455688899999999999999999999999752        3


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686          124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ  163 (220)
Q Consensus       124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~  163 (220)
                      +..+.++++|...+|..+|+++...|+..|..|..+++.+
T Consensus        86 ~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r  125 (127)
T 1ez3_A           86 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  125 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999865

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=98.50  E-value=2e-07  Score=76.68  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=76.9

Q ss_pred             CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686           71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G  123 (220)
Q Consensus        71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~  123 (220)
                      ..|.|++.+++|..                   +.++.+......+|+.++.+|+++++.|...|+.|...        +
T Consensus        37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~  116 (180)
T 1s94_A           37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNK  116 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            35679999999988                   66666777788999999999999999999999999852        2


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 027686          124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEG  166 (220)
Q Consensus       124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~  166 (220)
                      ++.+.++++|...+|..+++++...|+..|..|.++.|.+=.|
T Consensus       117 ~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~R  159 (180)
T 1s94_A          117 SSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKR  159 (180)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC---
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999988655

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=96.15  E-value=0.074  Score=44.35  Aligned_cols=93  Identities=18%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686           71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G  123 (220)
Q Consensus        71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~  123 (220)
                      .-+.|...+++|..                   +....+......+|+.++.+|.+++..|...++.|...        .
T Consensus        41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~  120 (279)
T 3c98_B           41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR  120 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            44678888888776                   45556666778899999999999999999998888641        2


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686          124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ  163 (220)
Q Consensus       124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~  163 (220)
                      ...+...+.|....||..+..+...|...|+.|...++..
T Consensus       121 ~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~e  160 (279)
T 3c98_B          121 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  160 (279)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999776654

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.73  E-value=0.75  Score=35.62  Aligned_cols=93  Identities=11%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             CCchhHhhHHHhhh------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---CcchHH
Q 027686           71 LPPAWVDDAEEIAN------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSN  129 (220)
Q Consensus        71 lpP~Wvd~~eei~~------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~---~~~e~~  129 (220)
                      -||.|-.....|..                  +=+=.|..+.-..|-.+...++++++.+-..|+.+....   ...+.+
T Consensus         8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r   87 (130)
T 2dnx_A            8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQR   87 (130)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence            47888888888866                  444456778899999999999999999999999998743   334445


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686          130 LRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ  163 (220)
Q Consensus       130 i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~  163 (220)
                      -.+=.+-.|+...+..-..|-+.|+.|..+-|.-
T Consensus        88 ~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~  121 (130)
T 2dnx_A           88 QQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES  121 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555688899999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.43
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	96.77

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=3.7e-07  Score=71.79  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             chhHhhHHHhhh------------------h--cCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcchHHHH
Q 027686           73 PAWVDDAEEIAN------------------L--SSFGD-GKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLR  131 (220)
Q Consensus        73 P~Wvd~~eei~~------------------~--p~F~D-~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i~  131 (220)
                      +.|.+.+++|..                  .  +.+.+ ......+|+.++.+|+.++++|...++.+...  ..+.+++
T Consensus         5 ~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~   82 (196)
T d1fioa_           5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--GIHDTNK   82 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHH
Confidence            457777777776                  2  22222 34678899999999999999999999999764  3456899


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 027686          132 KNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC  167 (220)
Q Consensus       132 kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~  167 (220)
                      +|....|+.+|++++..|+..|..|.+++|.+-.+.
T Consensus        83 ~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~  118 (196)
T d1fioa_          83 QAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ  118 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999986654

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.011  Score=43.43  Aligned_cols=74  Identities=16%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhHhh--------cCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 027686           90 DGKQDQHMIEILTYEITDLLRGSEKRLDKLSA--------AGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQ  161 (220)
Q Consensus        90 D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~--------~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk  161 (220)
                      -......+++.+..+|...-+.|...|+.|..        .++..+.++++|...+|..++.++=..|...|..|=...+
T Consensus        42 ~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k  121 (124)
T d1ez3a_          42 PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK  121 (124)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556788999999999999999999999964        1356899999999999999999999999999999988877


Q ss_pred             hh
Q 027686          162 QQ  163 (220)
Q Consensus       162 ~~  163 (220)
                      .+
T Consensus       122 ~r  123 (124)
T d1ez3a_         122 GR  123 (124)
T ss_dssp             TC
T ss_pred             hc
Confidence            53