Citrus Sinensis ID: 027688

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MAVSSSSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN
Secondary Structure (PSIPRED)
cccccccEEEccccccccccccHHHHHHHcccccccccccEEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHEEEEEEEEcccccccccccHHHHHHHHcccccccccccccccEEccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccccccEEEEccccccccHcHHEEcccccccHHEEEEcccccccccccccccccccccccccccHHHccccEEcccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccHEEEEcccc
Coil and Loop (DISEMBL)
mavsssslsvlspnsvprispkqseinaklsntqdsaSVHVKLFgksssrsgsvtklnaggklaliepdlnedpkdrwatngvdpedflygeydgahtyheggvvtgsFWGAIaddikavecptgfqgfigwLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIeldkpdkphnfepeiynmERGARDKLINDYNTMSIWEFNekyghlwdftvqrdmn
Flexible Loop (DISEMBL)
mavsssslsvlspnsvprisPKQSEINAklsntqdsasVHVKLfgksssrsgsvtklNAGGKLaliepdlnedpkdrwatngVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIEldkpdkphnfePEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN
Low Complexity Region (SEG)
MAvsssslsvlspnsvpRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN
Disordered region (IsUnstruct)
*****************************************************************************WATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKP****NFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTV*****
Disordered Region (DISOPRED)
******S***LSPNSVPR******************************************GKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQR***
Disordered Region (DISEMBL)
*******************SPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN
Disordered Region (DISPRO)
*****SSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVSSSSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
449432636	224	PREDICTED: uncharacterized protein LOC10	0.95	0.933	0.665	9e-74
449516045	224	PREDICTED: uncharacterized LOC101219293	0.95	0.933	0.660	4e-73
225432876	218	PREDICTED: uncharacterized protein LOC10	0.945	0.954	0.636	7e-73
147771927	223	hypothetical protein VITISV_032729 [Viti	0.95	0.937	0.625	1e-72
255551971	214	conserved hypothetical protein [Ricinus	0.895	0.920	0.623	6e-68
18422368	212	NAD(P)H dehydrogenase 18 [Arabidopsis th	0.936	0.971	0.568	2e-67
21553802	212	unknown [Arabidopsis thaliana]	0.936	0.971	0.558	9e-67
297790326	212	predicted protein [Arabidopsis lyrata su	0.936	0.971	0.558	3e-66
224111084	187	predicted protein [Populus trichocarpa]	0.818	0.962	0.659	3e-65
357487231	212	hypothetical protein MTR_5g042420 [Medic	0.927	0.962	0.537	1e-62

>gi|449432636|ref|XP_004134105.1| PREDICTED: uncharacterized protein LOC101219293 [Cucumis sativus]

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 166/221 (75%), Gaps = 12/221 (5%)

Query: 5   SSSLSVLSPNSVPRISPKQSEINA-------KLSNTQDSASVHVKLFGKSSSRSGSVTKL 57
            SSL VLS N +P+I  K SEI +       K+S T   +S   KL GK + RS S+ +L
Sbjct: 4   CSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSS--KLLGKLTRRSLSL-RL 60

Query: 58  NAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDI 117
           NA G L+ IEPDLNEDP DRW TN V PEDF YG YDG HTY EG    G+FWGAIADDI
Sbjct: 61  NAAG-LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEK-KGTFWGAIADDI 118

Query: 118 KAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFE 177
            AV  PTGFQG I WLFLPAVA  MYFNVPGEYL+IGAA+F  +F +IE+DKPD+PHNFE
Sbjct: 119 AAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFE 178

Query: 178 PEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           P+IYNMERGARDKLI+DYNTM IWEFNEKYG LWDFTV+ D
Sbjct: 179 PQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKND 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516045|ref|XP_004165058.1| PREDICTED: uncharacterized LOC101219293 [Cucumis sativus]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/221 (66%), Positives = 165/221 (74%), Gaps = 12/221 (5%)

Query: 5   SSSLSVLSPNSVPRISPKQSEINA-------KLSNTQDSASVHVKLFGKSSSRSGSVTKL 57
            SSL VLS N +P+I  K SEI +       K+S T   +S   KL GK + RS S+ +L
Sbjct: 4   CSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSS--KLLGKLTRRSLSL-RL 60

Query: 58  NAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDI 117
           NA G L+ IEPDLNEDP DRW TN V PEDF YG YDG HTY EG    G+FWGAIADDI
Sbjct: 61  NAAG-LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEK-KGTFWGAIADDI 118

Query: 118 KAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFE 177
            AV  PTGFQ  I WLFLPAVA  MYFNVPGEYL+IGAA+F  +F +IE+DKPD+PHNFE
Sbjct: 119 AAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFE 178

Query: 178 PEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           P+IYNMERGARDKLI+DYNTM IWEFNEKYG LWDFTV+ D
Sbjct: 179 PQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKND 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432876|ref|XP_002280020.1| PREDICTED: uncharacterized protein LOC100252711 [Vitis vinifera] gi|297737148|emb|CBI26349.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 167/223 (74%), Gaps = 15/223 (6%)

Query: 1   MAVSSSSLSVLSPNSVPRIS----PKQSEINAKLS-NTQDSASVHVKLFGKSSSRSGSVT 55
           MAVSSS  SVLS   + RIS    P ++ + A+ S  T  +++  +KLFG       ++ 
Sbjct: 1   MAVSSSP-SVLSTTLLSRISLSSQPLEARVRARFSIQTTPASTQQLKLFG-------NLR 52

Query: 56  KLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIAD 115
           +LNA G L+ IEPDLNEDP DRW TNG+  EDF YG YDG HTY EG    G+FWGAIA+
Sbjct: 53  RLNAAG-LSEIEPDLNEDPVDRWGTNGISSEDFKYGYYDGHHTYFEGDD-KGTFWGAIAE 110

Query: 116 DIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHN 175
           D  AVE PTGFQGFI W FLPA+A  MYFNVPGEYL+IGAA+F  +F +IE+DKPDKPHN
Sbjct: 111 DYAAVEPPTGFQGFISWAFLPAIAAGMYFNVPGEYLYIGAALFAAVFCIIEMDKPDKPHN 170

Query: 176 FEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           FEP+IYNMERGARDKLI DYNTM IWEFNEKYG LWDFTV++D
Sbjct: 171 FEPQIYNMERGARDKLIADYNTMDIWEFNEKYGDLWDFTVKKD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771927|emb|CAN66763.1| hypothetical protein VITISV_032729 [Vitis vinifera]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/224 (62%), Positives = 165/224 (73%), Gaps = 15/224 (6%)

Query: 1   MAVSSSSLSVLSPNSVPRISPKQSEINAKLS-----NTQDSASVHVKLFGKSSSRSGSVT 55
           MAVSSS  SVLS   + RISP    + A++       T  +++  +KLFG       ++ 
Sbjct: 1   MAVSSSP-SVLSTTLLSRISPSSQPLEARVRARFSIQTTPASTQQLKLFG-------NLR 52

Query: 56  KLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIAD 115
           +LNA G L+ IEPDLNEDP DRW TNG+ PEDF YG YDG HTY EG    G+FWGAIA+
Sbjct: 53  RLNAAG-LSEIEPDLNEDPVDRWGTNGISPEDFKYGYYDGHHTYFEGDD-KGTFWGAIAE 110

Query: 116 DIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHN 175
           D  AVE PTGFQGFI W FLPA+A  MYFNVPGEYL+IGAA+F  +F +IE+DKPDKPHN
Sbjct: 111 DYAAVEPPTGFQGFISWAFLPAIAAGMYFNVPGEYLYIGAALFAAVFCIIEMDKPDKPHN 170

Query: 176 FEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDM 219
           FEP+IYNMERGARDKLI DYNTM IWEFNEKYG LWDFT + ++
Sbjct: 171 FEPQIYNMERGARDKLIADYNTMDIWEFNEKYGDLWDFTQKGEL 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551971|ref|XP_002517030.1| conserved hypothetical protein [Ricinus communis] gi|223543665|gb|EEF45193.1| conserved hypothetical protein [Ricinus communis]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 153/207 (73%), Gaps = 10/207 (4%)

Query: 14  NSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNED 73
           N VP+IS  +SE+          + ++ K   + SS+    T+LNA G L+ IEPDLNED
Sbjct: 13  NPVPKISSYKSEMK--------ESGLNKKTLKRLSSKKRISTRLNAAG-LSEIEPDLNED 63

Query: 74  PKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWL 133
           P DRWAT  +DP+DF YGEYDG HTY EG     +FW  IA D +AVE PTGFQG I WL
Sbjct: 64  PVDRWATPSIDPDDFKYGEYDGHHTYFEGEE-KRTFWELIAADYEAVEPPTGFQGIISWL 122

Query: 134 FLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLIN 193
           FLPAVA  MYFN PGEY+FIGA VF  IF VIE+DKPDKPHNFEP+IY MERGARDKLI+
Sbjct: 123 FLPAVAAGMYFNAPGEYIFIGAGVFAFIFCVIEMDKPDKPHNFEPQIYTMERGARDKLIS 182

Query: 194 DYNTMSIWEFNEKYGHLWDFTVQRDMN 220
           DYN+MSIW+FNEKYG LWDFT+++D +
Sbjct: 183 DYNSMSIWDFNEKYGDLWDFTIKKDAD 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422368|ref|NP_568629.1| NAD(P)H dehydrogenase 18 [Arabidopsis thaliana] gi|10177943|dbj|BAB11302.1| unnamed protein product [Arabidopsis thaliana] gi|28393512|gb|AAO42177.1| unknown protein [Arabidopsis thaliana] gi|28973171|gb|AAO63910.1| unknown protein [Arabidopsis thaliana] gi|332007622|gb|AED95005.1| NAD(P)H dehydrogenase 18 [Arabidopsis thaliana]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 162/213 (76%), Gaps = 7/213 (3%)

Query: 6   SSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLAL 65
           +++++LSP S+P+++   S+  A++S+      V+V   GKS  R   + KL +   L+ 
Sbjct: 2   ATVTILSPKSIPKVT--DSKFGARVSDQ----IVNVVKCGKSGRRL-KLAKLVSAAGLSQ 54

Query: 66  IEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTG 125
           IEPD+NEDP  ++ TN ++ EDF YG YDGAHTY+EG V  G+FWGAIADDI AV+   G
Sbjct: 55  IEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNG 114

Query: 126 FQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMER 185
           FQG I  +FLPA+A  MYF+ PGEYLFIGAA+F  +F +IE+DKPD+PHNFEP+IY +ER
Sbjct: 115 FQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLER 174

Query: 186 GARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           GARDKLINDYNTMSIW+FN+KYG +WDFT+++D
Sbjct: 175 GARDKLINDYNTMSIWDFNDKYGDVWDFTIEKD 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553802|gb|AAM62895.1| unknown [Arabidopsis thaliana]

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 163/213 (76%), Gaps = 7/213 (3%)

Query: 6   SSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLAL 65
           +++++LSP S+P+++   S+  A++S+     +V+V +   +S R   + KL +   L+ 
Sbjct: 2   ATVTILSPKSIPKVT--DSKFGARVSDQ----TVNV-VKCSNSGRRLRLAKLVSAAGLSQ 54

Query: 66  IEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTG 125
           IEPD+NEDP  ++ TN ++ EDF YG YDGAHTY+EG V  G+FWGAIADDI AV+   G
Sbjct: 55  IEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNG 114

Query: 126 FQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMER 185
           FQG I  +FLPA+A  MYF+ PGEYLFIGAA+F  +F +IE+DKPD+PHNFEP+IY +ER
Sbjct: 115 FQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLER 174

Query: 186 GARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           GARDKLINDYNTMSIW+FN+KYG +WDFT+++D
Sbjct: 175 GARDKLINDYNTMSIWDFNDKYGDVWDFTIEKD 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790326|ref|XP_002863061.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297308869|gb|EFH39320.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 157/213 (73%), Gaps = 7/213 (3%)

Query: 6   SSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLAL 65
           +++++LSP S+P+I      I++K        +V+V   G S  R   + KL +   L+ 
Sbjct: 2   ATVTILSPKSIPKI------IDSKFGVKVPDQTVNVVKCGNSGRRL-RLAKLVSAAGLSQ 54

Query: 66  IEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTG 125
           IEPD+NEDP  ++  N ++ EDF YG YDGAHTY+EG V  G+FWGAIADDI AV+   G
Sbjct: 55  IEPDINEDPIGQFEINSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNG 114

Query: 126 FQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMER 185
           FQG I  +FLPA+A  MYF+ PGEYLFIGAA+F  +F +IE+DKPD+PHNFEP+IY +ER
Sbjct: 115 FQGLISLMFLPAIAAGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLER 174

Query: 186 GARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           GARDKLINDYNTMSIW+FN+KYG +WDFT+++D
Sbjct: 175 GARDKLINDYNTMSIWDFNDKYGDVWDFTIEKD 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111084|ref|XP_002315741.1| predicted protein [Populus trichocarpa] gi|222864781|gb|EEF01912.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/182 (65%), Positives = 144/182 (79%), Gaps = 2/182 (1%)

Query: 37  ASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGA 96
           ++ + +   K  ++ GS T+L A G L+ IEPDLNEDP+DRWAT GVD EDF YGE+DG 
Sbjct: 3   SAFNQRTIKKLGTKYGSRTRLYAAG-LSEIEPDLNEDPRDRWATPGVDAEDFKYGEWDGH 61

Query: 97  HTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAA 156
           HTY EG     ++W  + ++  + E PTGFQGFI W+FLPAVA  MYFNVPGEYLFIGA 
Sbjct: 62  HTYFEGQD-KRTYWEILKEEYTSTEPPTGFQGFISWIFLPAVAAGMYFNVPGEYLFIGAG 120

Query: 157 VFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQ 216
           +FV IF VIE+DKPDKPHNFEP+IYNMERGARDKLI+DYNTMSIW+FNEKYG LWDFT+ 
Sbjct: 121 LFVFIFCVIEMDKPDKPHNFEPQIYNMERGARDKLIDDYNTMSIWDFNEKYGDLWDFTIT 180

Query: 217 RD 218
           R+
Sbjct: 181 RE 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487231|ref|XP_003613903.1| hypothetical protein MTR_5g042420 [Medicago truncatula] gi|355515238|gb|AES96861.1| hypothetical protein MTR_5g042420 [Medicago truncatula] gi|388506878|gb|AFK41505.1| unknown [Medicago truncatula]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/214 (53%), Positives = 151/214 (70%), Gaps = 10/214 (4%)

Query: 5   SSSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLA 64
            SSLS++ P   P          +KL++   S+   +   G  +  + + TK        
Sbjct: 4   CSSLSLVPPIITP----------SKLTSKSFSSPTPLNFHGIFTKSNNNSTKFLLNAGFN 53

Query: 65  LIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPT 124
           L+EPDLNEDP D++ TNG+ PE+F YG +DG HT++EG    G+ WGAI DD+ AV  PT
Sbjct: 54  LVEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKEGTVWGAIMDDVIAVGPPT 113

Query: 125 GFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNME 184
           GFQG I WLF PA+A  ++F+VPGEYLFIGA +F  +F +IE+DKPD+PH+FEP+IYNME
Sbjct: 114 GFQGLISWLFPPAIAAGVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNME 173

Query: 185 RGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRD 218
           RGARDKLINDYN+MSIW+FNEKYG LWDFT+++D
Sbjct: 174 RGARDKLINDYNSMSIWDFNEKYGDLWDFTIKKD 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2170827	212	PnsB5 "AT5G43750" [Arabidopsis	0.904	0.938	0.579	6.2e-62

TAIR|locus:2170827 PnsB5 "AT5G43750" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 117/202 (57%), Positives = 148/202 (73%)

Query:    19 ISPKQ--SEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKD 76
             +SPK      ++K         V+V   GKS  R   + KL +   L+ IEPD+NEDP  
Sbjct:     7 LSPKSIPKVTDSKFGARVSDQIVNVVKCGKSGRRL-KLAKLVSAAGLSQIEPDINEDPIG 65

Query:    77 RWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLP 136
             ++ TN ++ EDF YG YDGAHTY+EG V  G+FWGAIADDI AV+   GFQG I  +FLP
Sbjct:    66 QFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLISCMFLP 125

Query:   137 AVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYN 196
             A+A  MYF+ PGEYLFIGAA+F  +F +IE+DKPD+PHNFEP+IY +ERGARDKLINDYN
Sbjct:   126 AIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLERGARDKLINDYN 185

Query:   197 TMSIWEFNEKYGHLWDFTVQRD 218
             TMSIW+FN+KYG +WDFT+++D
Sbjct:   186 TMSIWDFNDKYGDVWDFTIEKD 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  189 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.14u 0.07s 17.21t   Elapsed:  00:00:01
  Total cpu time:  17.14u 0.07s 17.21t   Elapsed:  00:00:01
  Start:  Sat May 11 04:53:31 2013   End:  Sat May 11 04:53:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020113001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.448
	GSVIVG00010970001	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)				•					0.439
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.437
	GSVIVG00035114001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (226 aa)				•					0.436
	GSVIVG00015908001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (324 aa)				•					0.435
	GSVIVG00037480001	SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (214 aa)							•		0.430
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.428
	GSVIVG00002796001	SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (105 aa)							•		0.428
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.424
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00